RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8848
(459 letters)
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 439
Score = 244 bits (623), Expect = 9e-77
Identities = 110/447 (24%), Positives = 209/447 (46%), Gaps = 14/447 (3%)
Query: 15 KSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQ 74
E ++LAQ ++YA K G + + + S +R K+D ++Q ++ +++ +Y+
Sbjct: 3 TDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYV- 61
Query: 75 DGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTP 134
DG+ G+ ST+ +K L I + R+ A D L D +
Sbjct: 62 DGRY---GSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYD 118
Query: 135 WFLS---IDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSK 191
+ DD +A EA + I++ ++ + S+GF +
Sbjct: 119 AKFASLNPDDKIEMAKAVAEEALGKDERIISVGSS-YGDGEDFAYRLISNGFEGETKSTW 177
Query: 192 HIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPV 251
+ +S E + ++ +S + IG A +R + +L KK+ + K +
Sbjct: 178 YSLSADITIRGEGEARPSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTM 237
Query: 252 LFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSF 311
+ + + LL+ ++G++L +K++FL++ L +KI S + + ++PH++ + G+ F
Sbjct: 238 VVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYF 297
Query: 312 DNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKE 371
DNEG+ T++R + G++ YF+ TY+AKK+G+ T I NL
Sbjct: 298 DNEGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPT------ISGSSILVMETGDKNLDG 351
Query: 372 MLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQI 431
++ + G+LVT G N TGD+S G G+ IENGK+ V E+ ++G L ++ +
Sbjct: 352 LIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSEMNVTGNLITLWNSL 411
Query: 432 VAIGSDVLTRNSNTSGSILIENMIIAG 458
VA G+D +S S++ E + +G
Sbjct: 412 VATGNDPRLNSSWRIPSLVFEGVDFSG 438
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga
maritima [TaxId: 2336]}
Length = 433
Score = 223 bits (569), Expect = 7e-69
Identities = 109/443 (24%), Positives = 202/443 (45%), Gaps = 13/443 (2%)
Query: 17 EFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDG 76
F++ + AKK G I F E FS+ + G +D N+ + + DG
Sbjct: 2 TFEEFKDRLFALAKKNGV-EVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLK-DG 59
Query: 77 KKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWF 136
K G T ++ A + + S+ + E ++ +
Sbjct: 60 KT---GTFRTQVL--ENPEKCFEEALSNLQVKDSEEKEYFFEGGK-EYREMETYVGRFEK 113
Query: 137 LSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISI 196
LS+ + +A + A + +V ++ N+ G +
Sbjct: 114 LSVKEKMDMAKKAHESAAK-DERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFA 172
Query: 197 SPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAP 256
IA + +WY P+ PE IG AA+ IS + +K I + K PVL
Sbjct: 173 MAIARDAN-PRSGSWYELARTPED-LNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNT 230
Query: 257 LAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGV 316
+L+ +F +IS ++ + + L LG+++ + + I + P+ S+ FD+EGV
Sbjct: 231 ALLDLMEMFIPMISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGV 290
Query: 317 KTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKM 376
T ++ V++NG+++ + + +A+K G++ TGN + + +E+LK+M
Sbjct: 291 PTTEKFVLENGVLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEM 350
Query: 377 NTGLLVTELMG--DGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAI 434
+ G+++TE+ G G N I+G++S A GYW+ENG+I + VE+ITISG ++ ++IV +
Sbjct: 351 DRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNFLDLLRKIVLV 410
Query: 435 GSDVLTRNSNTSGSILIENMIIA 457
G+DV + S+L+E + +A
Sbjct: 411 GNDVKVSQHTIAPSVLVEVLDVA 433
>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId:
287]}
Length = 298
Score = 29.2 bits (65), Expect = 1.1
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 17/157 (10%)
Query: 66 NMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPD--ENTLE 123
+ NVI + + C + Y +N AY+ A + +
Sbjct: 34 DGNVITVDMNSSTDDSKTTPFRFACPTNTYKQVNGAYSPLN-DAHFFGGVVFKLYRDWFG 92
Query: 124 MNPLDFKL-----YTPWFLS--IDDAKLIAYRCENEAFNFNSL-IVNNENT-GVTTQQSH 174
+PL KL Y + D ++ + SL + +E + G T Q S
Sbjct: 93 TSPLTHKLYMKVHYGRSVENAYWDGTAMLFGDGATMFYPLVSLDVAAHEVSHGFTEQNSG 152
Query: 175 FLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNW 211
+ G M ++ ++ A + ++++
Sbjct: 153 LIYRGQSGGM-----NEAFSDMAGEAAEFYMRGKNDF 184
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
34413]}
Length = 399
Score = 29.0 bits (65), Expect = 1.3
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 44 GNGFSVFVRKGKIDVIEQ---NNDKNMNVI--IYIQDGKK----------MFYGNSSTSD 88
G F V K V+ Q N + I Y+QDGK + Y N +
Sbjct: 255 GEEFKVNTLK-PFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDE 313
Query: 89 FCKKSLYDTINAAYNIARFTAS 110
FC+ + +
Sbjct: 314 FCEATGSRKYMELGATQGMGEA 335
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 27.3 bits (60), Expect = 3.2
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 87 SDFCKKSLYDTINAAYNI 104
C+ + YDT+ Y++
Sbjct: 12 PALCEFACYDTLELCYDL 29
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite
reductase subunit alpha, DsrA {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 189
Score = 26.9 bits (59), Expect = 4.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 87 SDFCKKSLYDTINAAYNI 104
C+ + YD+ A Y +
Sbjct: 13 KSRCEFACYDSQAACYEL 30
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 415
Score = 26.4 bits (57), Expect = 7.1
Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 8/152 (5%)
Query: 72 YIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLD--F 129
+ D + N + DF SLY +I +N++ T P E E +
Sbjct: 49 VVIDPPAGIFFNITVLDF--ASLYPSIIRTWNLSYETVDIQQCKKPYEVKDETGEVLHIV 106
Query: 130 KLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPF 189
+ P ++ L +R + + + E + + + +
Sbjct: 107 CMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGA 166
Query: 190 SKHIISISPIAI----KGKEMQRDNWYSSNSD 217
+ +A G+ + + +
Sbjct: 167 ETFPLYAPRVAESVTALGRYVITSTVKKAREE 198
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.378
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,666,919
Number of extensions: 79711
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 15
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)