BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8849
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7P0P8|IOJAP_CHRVO Ribosomal silencing factor RsfS OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=rsfS PE=1 SV=1
Length = 122
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 75/111 (67%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
M I + + I+ L+DIK +DI DTS LT+LF R+ +A+G S RQ+ ALA S++ +K
Sbjct: 1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
+IV EG +S EW+L+D GD+++H+M P +R+ Y++E +WG ++ F
Sbjct: 61 EAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111
>sp|Q5NLX3|IOJAP_ZYMMO Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rsfS PE=1 SV=1
Length = 133
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%)
Query: 9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
+V L D +A +I + +++ D + IASG S RQ+ A+A + IK +
Sbjct: 22 LVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATGYVSK 81
Query: 69 IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWG 105
IEG +++W+LLD GDIIIH+ P +R+ YNLE +WG
Sbjct: 82 IEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWG 118
>sp|Q97P97|IOJAP_STRPN Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1
SV=1
Length = 117
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 3 INKRQII--VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
+N+++++ V+K + +A+DI D +LT++ D + I S + RQ++A+A +IR+ +
Sbjct: 1 MNEKELLELVVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVA 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGE 106
++EG + W+LLDLG +++HI + +R YNLE++W E
Sbjct: 61 QAGFKGSHVEGDAAGGWVLLDLGAVVVHIFSEEMRAHYNLEKLWHE 106
>sp|P0AAT8|IOJAP_SHIFL Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3
SV=1
Length = 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
M Q VI + D+K QDI D +++ D + I +G+S R + ++A + + +
Sbjct: 1 MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
+ +EG+ S++W+++DLGD+I+H+M R +Y LE++W
Sbjct: 61 AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104
>sp|P0AAT6|IOJAP_ECOLI Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12)
GN=rsfS PE=1 SV=1
Length = 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
M Q VI + D+K QDI D +++ D + I +G+S R + ++A + + +
Sbjct: 1 MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
+ +EG+ S++W+++DLGD+I+H+M R +Y LE++W
Sbjct: 61 AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104
>sp|P0AAT7|IOJAP_ECOL6 Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1
Length = 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
M Q VI + D+K QDI D +++ D + I +G+S R + ++A + + +
Sbjct: 1 MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQESR 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
+ +EG+ S++W+++DLGD+I+H+M R +Y LE++W
Sbjct: 61 AAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104
>sp|Q96EH3|MASU1_HUMAN Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo
sapiens GN=MALSU1 PE=1 SV=1
Length = 234
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALA---VSIRKNIKNINNN 65
+++ +L+ A+DI V D I SG+S R ++A+A V + K++K +
Sbjct: 96 MMVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDP 155
Query: 66 IVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
V IEGK + +WL +D G ++IH+M P R +Y LE++W
Sbjct: 156 HVKIEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLW 194
>sp|P44471|IOJAP_HAEIN Ribosomal silencing factor RsfS OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsfS PE=3 SV=1
Length = 102
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%)
Query: 9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
+++ L +K DI +D +++ D + I +G+S RQ++A+A ++ K
Sbjct: 6 FLMETLDGLKGTDIVHFDVRGKSSITDNMIICTGTSSRQVSAMADNLITECKKAGFETFG 65
Query: 69 IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
EGK +++W+++DLG I+HIM R MY LE++W
Sbjct: 66 EEGKNTADWIVVDLGQAIVHIMQRDAREMYQLEKLW 101
>sp|Q9CWV0|MASU1_MOUSE Mitochondrial assembly of ribosomal large subunit protein 1 OS=Mus
musculus GN=Malsu1 PE=2 SV=1
Length = 228
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALA---VSIRKNIKNINNN 65
+++ +L+ A+DI V D I SG+S R ++A+ V + K++K ++
Sbjct: 90 MLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHAMVHYLVKMYKHLKCRSDP 149
Query: 66 IVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
V IEGK + +WL +D G ++IH+M P R Y LE++W
Sbjct: 150 YVKIEGKDADDWLCVDFGSMVIHLMLPETRETYELEKLW 188
>sp|Q9KD89|IOJAP_BACHD Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rsfS PE=1 SV=1
Length = 117
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 58/98 (59%)
Query: 9 IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
+ + + D KA+ + + ++ + D I G+S++Q+ A+A ++K + I
Sbjct: 9 LAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKR 68
Query: 69 IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGE 106
+EG + + W+L+DLGD+++H+ + R YNLE++WG+
Sbjct: 69 LEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGD 106
>sp|P73658|IOJAP_SYNY3 Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rsfS PE=1 SV=1
Length = 154
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 10 VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNI-VN 68
+ + ++ KA D+ + ++++ L D I +G S+ Q+ A+A +I K ++ ++ + +
Sbjct: 34 IAQAAEERKAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNIEKQVELVHGQLPTH 93
Query: 69 IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKE 108
EG S W+L D GD+++H P R Y LE WG +
Sbjct: 94 TEGNSESIWVLQDFGDVLVHTFMPEEREFYKLEAFWGHAQ 133
>sp|Q9LDY9|IOJAC_ARATH Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2
SV=1
Length = 238
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 10 VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNI 69
+ K+ D+KA DIKV L IA+ S+ QI+A+ +R + + N
Sbjct: 127 LAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDLAEKKYGKVANG 186
Query: 70 EGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWG 105
+ K +S W LLD GD++IH+ P R YNLE+ +G
Sbjct: 187 DVKPNS-WTLLDFGDVVIHLFLPPQRTFYNLEDFYG 221
>sp|Q41822|IOJAP_MAIZE Protein Iojap, chloroplast OS=Zea mays GN=Ij PE=1 SV=1
Length = 228
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 8 IIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIV 67
+ + K +IKA DI+V L I + S QI+A++ +R +I + V
Sbjct: 118 VSLAKAASEIKATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAISSKMR-DIGEKQFSKV 176
Query: 68 NIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEK---EIKFN 112
K + W LLD GD+++HI P R YNLEE +G E+ F+
Sbjct: 177 ASGDTKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATPIELPFD 224
>sp|O83720|IOJAP_TREPA Ribosomal silencing factor RsfS OS=Treponema pallidum (strain
Nichols) GN=rsfS PE=1 SV=1
Length = 111
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIAS-----GSSKRQINALAVSI 55
M+ N V + L D +A+D+ V+D S D +A+ + R + A
Sbjct: 1 MSANGAASAVAEALCDARAEDVCVFDVSARCGWADFAVVATVPGLLHGTHRLVCEQAA-- 58
Query: 56 RKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIW 104
R ++ ++ G +W +LD G I++H+M+ R Y+L+ +W
Sbjct: 59 RFGLREVHRKK---RGLCEEQWRVLDFGSILVHLMSAQARAFYDLDRLW 104
>sp|Q9CAF9|IOJAM_ARATH Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana
GN=At1g67620 PE=2 SV=1
Length = 184
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 10/106 (9%)
Query: 10 VIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSI-------RKNIKNI 62
V KIL D+KA ++ V T N D IA+G S + +A ++ +K K++
Sbjct: 50 VEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKHV 109
Query: 63 NNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKE 108
+ +++G +S+W+++D G ++H ++ R +NLE +W +
Sbjct: 110 M--LPSVQGY-NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAES 152
>sp|P54457|IOJAP_BACSU Ribosomal silencing factor RsfS OS=Bacillus subtilis (strain 168)
GN=rsfS PE=3 SV=1
Length = 118
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 3 INKRQI--IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
+N++ I I D +A+DI D ++ + D I G+S +Q+ A+A I+
Sbjct: 1 MNQKSILKIAAAACDDKRAEDILALDMEGISLVADYFLICHGNSDKQVQAIAREIKDQAD 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109
+ +EG + W+L+DLGD+++H+ + R+ YNLE++WG+ +
Sbjct: 61 ENGIQVKKMEGFDEARWVLVDLGDVVVHVFHKDERSYYNLEKLWGDAPL 109
>sp|P34523|YM62_CAEEL Uncharacterized protein K12H4.2 OS=Caenorhabditis elegans
GN=K12H4.2 PE=3 SV=2
Length = 190
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 10 VIKILKDIKAQDIKV--YDTSNLTNLFDRITIASGSSKRQINALAVSIRK-----NIKNI 62
V+ L D +A+D+ V + + +T +I I S + RQ +A++ ++R + N
Sbjct: 67 VVGALTDQRAKDVFVVKSEETEMTPYTHKI-ICSAFNSRQASAISENLRSLLKIDGVSNG 125
Query: 63 NNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWG 105
+ + K+S+ W + ++ + +H+M+ R Y+LE IW
Sbjct: 126 SMSHARRSTKRSNGWYVSEVERVQVHVMSEECREKYDLEAIWA 168
>sp|A5D9T6|ATP25_PICGU ATPase synthesis protein 25, mitochondrial OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=ATP25 PE=3 SV=2
Length = 575
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 25 YDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEG------------- 71
+D S I IASG S++ I A +R +IK+ +++ +IEG
Sbjct: 113 HDYSTHHQPAKYILIASGKSEKHIMKAASQLRIHIKHTYDHLPSIEGMVTGGTSPRARRR 172
Query: 72 -----------------KKSSEWLLLDLG--DIIIHIMNPYIRNMYNLEEIWGEKE 108
K ++ W++ + G + IH++ R NLE +W +E
Sbjct: 173 MLRRSRKGPMATDNEYGKAANSWVMCETGVDGLFIHMLTADRRQELNLESLWCREE 228
>sp|A5DSC6|ATP25_LODEL ATPase synthesis protein 25, mitochondrial OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=ATP25 PE=3 SV=1
Length = 632
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 39/136 (28%)
Query: 14 LKDIKAQDIKVYDTSNLTNLFDR------ITIASGSSKRQINALAVSIRKNIKN------ 61
L +K D+ + T + +L DR + IASG S++ I + ++++IK+
Sbjct: 86 LSGVKVIDLALLPTDHPKSL-DRQSEEKIVVIASGKSEKHIYKASYDLKQHIKHDWGFQC 144
Query: 62 -----INNNIVNIEGKK-------------------SSEWLLLDLGD-IIIHIMNPYIRN 96
+ N++ +E ++ + W+ +L D +I+H+M+P R
Sbjct: 145 AIEGMVTNSMSAVERRRLAKRARQGPPATHNEFGINPNTWVRCELPDGVIVHMMSPERRE 204
Query: 97 MYNLEEIWGEKEIKFN 112
+LE ++ E IKFN
Sbjct: 205 ALDLELMYDES-IKFN 219
>sp|Q2STK2|GCSP_BURTA Glycine dehydrogenase [decarboxylating] OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=gcvP PE=3 SV=1
Length = 975
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 33 LFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNI 69
FD +TI +G+ QI+ALA + R N++ +++ V I
Sbjct: 400 FFDTLTIDTGARTAQIHALANAKRINLRRVSDTRVGI 436
>sp|C4XVT2|ATP25_CLAL4 ATPase synthesis protein 25, mitochondrial OS=Clavispora lusitaniae
(strain ATCC 42720) GN=ATP25 PE=3 SV=1
Length = 600
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 35 DRITIASGSSKRQINALAVSIRKNIKNINNNIVNIE------------------------ 70
D I +A+G S++ I A +R ++K+ N + +IE
Sbjct: 129 DFIVVATGKSEKHIYKAANELRTHLKHKYNAMPSIEGMVSSAITPSMRRRLLRRARKGPL 188
Query: 71 ------GKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKE 108
GK ++ W++ I +H++ R NLE +W + E
Sbjct: 189 ATDNDYGKAANSWVICHHDGIDMHMLTAPRREELNLESLWCKPE 232
>sp|A3LX99|NM111_PICST Pro-apoptotic serine protease NMA111 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=NMA111 PE=3 SV=1
Length = 983
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 80 LDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
L GDII+ + + ++NM +L+ ++ E+E+KF
Sbjct: 808 LKAGDIILSVNDIIVKNMRDLKPMFTEQELKF 839
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,814,182
Number of Sequences: 539616
Number of extensions: 1219979
Number of successful extensions: 4444
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4410
Number of HSP's gapped (non-prelim): 54
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)