Query psy8849
Match_columns 112
No_of_seqs 134 out of 1023
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:48:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o5a_A BH1328 protein; BHR21, 100.0 2E-49 6.8E-54 277.2 12.2 109 1-109 1-109 (125)
2 2id1_A Hypothetical protein; a 100.0 9.1E-49 3.1E-53 275.4 13.3 110 1-110 1-111 (130)
3 3ups_A Iojap-like protein; PSI 100.0 2.2E-48 7.5E-53 275.2 12.7 109 1-109 17-125 (136)
4 3fni_A Putative diflavin flavo 83.9 3.6 0.00012 27.9 6.4 47 2-49 17-72 (159)
5 3mgj_A Uncharacterized protein 79.7 10 0.00034 25.5 7.2 53 6-58 17-71 (118)
6 3hly_A Flavodoxin-like domain; 78.5 4.3 0.00015 27.4 5.2 42 2-44 13-62 (161)
7 5nul_A Flavodoxin; electron tr 77.8 4.7 0.00016 26.0 5.1 41 2-43 11-55 (138)
8 2wp4_A Molybdopterin-convertin 76.6 7.8 0.00027 26.7 6.1 74 4-78 66-143 (147)
9 2q5w_E Molybdopterin-convertin 75.5 7.8 0.00027 26.8 5.9 74 5-79 59-136 (149)
10 2omd_A Molybdopterin-convertin 74.6 12 0.00039 26.1 6.6 74 5-79 65-143 (154)
11 3f6r_A Flavodoxin; FMN binding 71.6 9 0.00031 24.9 5.3 40 3-43 15-59 (148)
12 1mp9_A Tata-binding protein; t 70.2 6.3 0.00022 28.5 4.6 43 23-65 50-97 (198)
13 1fm0_E Molybdopterin convertin 69.7 7.2 0.00025 27.0 4.6 73 5-78 61-137 (150)
14 2fz5_A Flavodoxin; alpha/beta 65.1 13 0.00044 23.4 4.9 41 2-43 12-56 (137)
15 1f4p_A Flavodoxin; electron tr 64.2 15 0.00052 23.6 5.2 40 3-43 14-58 (147)
16 1ytb_A Protein (tata binding p 64.0 9.2 0.00031 27.2 4.3 32 34-65 57-89 (180)
17 2z8u_A Tata-box-binding protei 62.2 11 0.00037 27.0 4.4 43 23-65 50-97 (188)
18 1ais_A TBP, protein (tata-bind 61.8 11 0.00038 26.8 4.4 33 33-65 60-93 (182)
19 3b6i_A Flavoprotein WRBA; flav 61.1 17 0.00057 24.5 5.2 54 3-56 15-95 (198)
20 3ign_A Diguanylate cyclase; gg 59.9 33 0.0011 22.3 7.8 54 4-61 63-116 (177)
21 3hva_A Protein FIMX; ggdef dig 58.5 34 0.0012 22.1 6.3 54 4-61 68-121 (177)
22 3la6_A Tyrosine-protein kinase 58.4 53 0.0018 24.2 8.7 63 20-99 202-273 (286)
23 4dik_A Flavoprotein; TM0755, e 56.8 17 0.00058 28.6 5.1 48 2-49 278-335 (410)
24 3nn1_A Chlorite dismutase; fer 55.9 60 0.002 24.1 7.8 53 5-57 38-91 (241)
25 2vxh_A Chlorite dismutase; hem 55.7 57 0.002 24.3 7.6 53 5-57 46-99 (251)
26 1rm1_A Tata-box binding protei 55.6 15 0.00051 27.4 4.3 31 35-65 118-149 (240)
27 1ydg_A Trp repressor binding p 55.0 32 0.0011 23.5 5.8 53 3-56 20-105 (211)
28 1bvy_F Protein (cytochrome P45 54.8 21 0.00072 24.9 4.9 41 3-44 35-78 (191)
29 2ark_A Flavodoxin; FMN, struct 54.2 20 0.00068 24.4 4.6 43 3-45 18-64 (188)
30 3rpj_A Curlin genes transcript 53.3 5.6 0.00019 27.4 1.5 43 55-99 15-58 (134)
31 2obb_A Hypothetical protein; s 52.3 8.9 0.00031 26.0 2.5 28 35-66 41-68 (142)
32 3pg5_A Uncharacterized protein 51.0 51 0.0017 24.9 6.9 47 7-53 141-195 (361)
33 2ko1_A CTR148A, GTP pyrophosph 50.0 35 0.0012 19.7 4.8 49 6-55 18-66 (88)
34 1s2o_A SPP, sucrose-phosphatas 49.4 14 0.00048 26.1 3.2 18 36-53 36-53 (244)
35 2vzf_A NADH-dependent FMN redu 49.2 20 0.00067 24.6 3.9 45 3-48 18-84 (197)
36 2a5l_A Trp repressor binding p 48.7 20 0.00068 24.1 3.9 53 3-56 19-98 (200)
37 1e5d_A Rubredoxin\:oxygen oxid 48.3 24 0.00081 26.5 4.5 41 3-44 266-314 (402)
38 1obo_A Flavodoxin; electron tr 48.2 28 0.00096 22.9 4.5 38 3-43 15-56 (169)
39 1vdh_A Muconolactone isomerase 47.7 84 0.0029 23.4 7.5 39 17-57 57-95 (249)
40 3ju3_A Probable 2-oxoacid ferr 47.6 21 0.00071 23.0 3.6 24 33-56 13-36 (118)
41 4ap8_A Molybdopterin synthase 46.9 39 0.0013 22.9 5.0 65 5-70 65-131 (135)
42 2rcf_A Unidentified carboxysom 46.8 30 0.001 22.1 4.2 31 17-48 31-61 (91)
43 3kjh_A CO dehydrogenase/acetyl 46.6 66 0.0022 21.8 9.0 56 7-64 120-183 (254)
44 2amj_A Modulator of drug activ 46.0 38 0.0013 23.6 5.1 53 3-56 32-97 (204)
45 1t0t_V APC35880; pentamer, ico 45.9 90 0.0031 23.2 7.4 39 17-57 53-91 (248)
46 3tvk_A DGC, diguanylate cyclas 45.7 70 0.0024 21.9 7.5 55 4-62 57-111 (179)
47 3rpf_A Molybdopterin synthase 45.5 50 0.0017 22.7 5.5 65 4-70 59-125 (148)
48 3qgm_A P-nitrophenyl phosphata 44.7 9.9 0.00034 26.7 1.8 21 35-55 41-61 (268)
49 1nf2_A Phosphatase; structural 44.6 17 0.00057 25.9 3.0 20 35-54 35-54 (268)
50 3m21_A Probable tautomerase HP 44.5 39 0.0013 19.1 4.2 37 42-78 13-54 (67)
51 2hna_A Protein MIOC, flavodoxi 44.2 61 0.0021 20.8 5.6 42 2-44 14-57 (147)
52 2zki_A 199AA long hypothetical 43.7 26 0.00087 23.7 3.8 53 3-56 17-97 (199)
53 2c5k_P Vacuolar protein sortin 43.7 3.8 0.00013 20.5 -0.4 8 95-102 17-24 (26)
54 1ykg_A SIR-FP, sulfite reducta 43.5 36 0.0012 22.6 4.5 41 3-44 23-67 (167)
55 3pdw_A Uncharacterized hydrola 43.2 11 0.00038 26.5 1.8 20 36-55 40-59 (266)
56 1xvi_A MPGP, YEDP, putative ma 42.9 15 0.0005 26.5 2.5 19 35-53 43-61 (275)
57 1l6r_A Hypothetical protein TA 41.8 20 0.00068 25.1 3.0 19 36-54 40-58 (227)
58 4dzz_A Plasmid partitioning pr 41.6 56 0.0019 21.6 5.3 28 5-33 17-44 (206)
59 3eik_A Tata-box-binding protei 41.4 37 0.0013 24.9 4.5 43 23-65 80-127 (218)
60 1t5b_A Acyl carrier protein ph 40.6 55 0.0019 21.8 5.1 28 3-30 18-46 (201)
61 3hvw_A Diguanylate-cyclase (DG 40.1 38 0.0013 22.3 4.1 53 4-61 54-106 (176)
62 3hnw_A Uncharacterized protein 39.6 17 0.00059 24.7 2.3 28 35-63 18-45 (138)
63 3ry0_A Putative tautomerase; o 39.5 47 0.0016 18.6 4.0 28 39-66 7-35 (65)
64 2zos_A MPGP, mannosyl-3-phosph 39.1 20 0.0007 25.2 2.8 18 36-53 35-52 (249)
65 2b30_A Pvivax hypothetical pro 38.3 25 0.00087 25.7 3.2 21 35-55 62-84 (301)
66 1czn_A Flavodoxin; FMN binding 37.8 37 0.0013 22.3 3.8 39 3-43 14-56 (169)
67 3ezu_A Ggdef domain protein; m 37.4 1.3E+02 0.0044 22.5 8.2 55 4-62 237-291 (342)
68 1sqs_A Conserved hypothetical 37.3 51 0.0018 23.2 4.7 53 3-55 17-105 (242)
69 1zpv_A ACT domain protein; str 37.3 55 0.0019 19.2 4.2 58 6-64 18-75 (91)
70 3asz_A Uridine kinase; cytidin 36.9 15 0.00053 24.9 1.7 34 30-63 176-209 (211)
71 1otf_A 4-oxalocrotonate tautom 36.6 52 0.0018 17.8 3.9 27 40-66 8-35 (62)
72 4fu0_A D-alanine--D-alanine li 35.8 28 0.00096 26.2 3.2 48 36-83 6-55 (357)
73 2fvt_A Conserved hypothetical 35.6 8.8 0.0003 26.0 0.3 29 34-65 68-96 (135)
74 2ohh_A Type A flavoprotein FPR 35.5 57 0.0019 24.4 4.9 53 3-56 270-334 (404)
75 1rtt_A Conserved hypothetical 35.3 22 0.00074 24.1 2.3 51 3-55 22-98 (193)
76 2fcr_A Flavodoxin; electron tr 35.1 30 0.001 23.2 3.0 39 2-43 12-55 (173)
77 2q62_A ARSH; alpha/beta, flavo 35.0 68 0.0023 23.2 5.1 52 3-55 50-124 (247)
78 2opa_A Probable tautomerase YW 34.7 56 0.0019 17.6 4.0 27 40-66 8-35 (61)
79 1wr8_A Phosphoglycolate phosph 34.5 31 0.001 23.9 3.0 18 36-53 38-55 (231)
80 1t57_A Conserved protein MTH16 34.2 20 0.0007 26.2 2.0 64 2-65 35-107 (206)
81 1ycg_A Nitric oxide reductase; 34.2 37 0.0013 25.4 3.6 40 3-43 265-312 (398)
82 3hlu_A Uncharacterized protein 33.9 86 0.0029 19.5 5.2 49 8-56 19-67 (96)
83 3p0f_A Uridine phosphorylase 2 33.9 59 0.002 24.4 4.7 77 5-87 52-143 (297)
84 1t3u_A Conserved hypothetical 32.9 32 0.0011 21.7 2.6 28 35-62 15-42 (104)
85 2j5a_A 30S ribosomal protein S 32.9 56 0.0019 20.9 3.9 50 33-82 9-71 (110)
86 2q9u_A A-type flavoprotein; fl 32.8 57 0.002 24.6 4.5 52 3-55 270-333 (414)
87 1t0i_A YLR011WP; FMN binding p 32.6 41 0.0014 22.6 3.4 27 3-29 16-47 (191)
88 3i5c_A Fusion of general contr 32.4 1.1E+02 0.0037 20.2 7.5 55 4-63 85-141 (206)
89 3lwb_A D-alanine--D-alanine li 32.4 23 0.00078 27.1 2.2 48 35-82 12-61 (373)
90 2hl0_A Threonyl-tRNA synthetas 32.1 1.2E+02 0.0042 20.8 6.4 55 4-66 58-112 (143)
91 3cpk_A Uncharacterized protein 32.1 12 0.00039 26.1 0.4 40 23-65 72-117 (150)
92 2gm2_A Conserved hypothetical 31.9 11 0.00038 25.3 0.3 29 34-65 65-93 (132)
93 1gyx_A YDCE, B1461, hypothetic 31.2 51 0.0018 19.2 3.3 26 41-66 9-36 (76)
94 2fi9_A Outer membrane protein; 30.7 11 0.00039 25.0 0.2 29 34-65 69-97 (128)
95 1rkq_A Hypothetical protein YI 30.4 18 0.00061 26.0 1.2 19 35-53 39-57 (282)
96 2hpv_A FMN-dependent NADH-azor 30.3 70 0.0024 21.7 4.3 26 3-28 19-45 (208)
97 2hq7_A Protein, related to gen 29.8 70 0.0024 20.2 4.0 53 1-53 2-64 (146)
98 1rwu_A Hypothetical UPF0250 pr 29.3 1.2E+02 0.004 19.6 5.8 52 4-56 47-100 (109)
99 2vt1_B Surface presentation of 29.0 60 0.0021 20.6 3.5 25 37-66 19-43 (93)
100 3mb2_A 4-oxalocrotonate tautom 28.7 80 0.0027 18.0 3.8 27 40-66 9-36 (72)
101 1u02_A Trehalose-6-phosphate p 28.4 36 0.0012 23.8 2.6 18 36-53 40-57 (239)
102 3hr4_A Nitric oxide synthase, 28.2 81 0.0028 22.7 4.5 40 3-44 54-97 (219)
103 2fzv_A Putative arsenical resi 28.1 74 0.0025 23.8 4.4 42 3-45 74-135 (279)
104 3lcm_A SMU.1420, putative oxid 27.9 76 0.0026 21.7 4.2 51 3-55 16-99 (196)
105 2fue_A PMM 1, PMMH-22, phospho 27.4 41 0.0014 23.8 2.7 14 35-48 46-59 (262)
106 4dw8_A Haloacid dehalogenase-l 27.3 42 0.0014 23.5 2.7 19 35-53 39-57 (279)
107 3fkq_A NTRC-like two-domain pr 27.0 2E+02 0.0068 21.5 8.4 47 7-53 247-301 (373)
108 3pgv_A Haloacid dehalogenase-l 27.0 29 0.00099 24.7 1.8 20 34-53 54-73 (285)
109 1vp8_A Hypothetical protein AF 26.8 12 0.0004 27.5 -0.4 64 2-65 27-100 (201)
110 3bzy_B ESCU; auto cleavage pro 26.5 57 0.0019 20.2 2.9 25 37-66 19-43 (83)
111 1otg_A 5-carboxymethyl-2-hydro 26.4 45 0.0016 21.7 2.6 60 3-62 17-90 (125)
112 2raf_A Putative dinucleotide-b 26.3 1.6E+02 0.0054 20.2 5.7 50 8-60 32-82 (209)
113 1cqm_A Ribosomal protein S6; a 26.1 86 0.0029 19.6 3.8 48 35-82 5-65 (101)
114 3mpo_A Predicted hydrolase of 26.1 45 0.0015 23.3 2.7 18 35-52 39-56 (279)
115 3rpe_A MDAB, modulator of drug 26.1 1.1E+02 0.0038 21.9 4.8 54 3-57 45-111 (218)
116 3m20_A 4-oxalocrotonate tautom 26.1 90 0.0031 17.3 4.1 39 41-79 8-51 (62)
117 3e6q_A Putative 5-carboxymethy 26.0 58 0.002 22.1 3.2 60 3-62 39-112 (146)
118 2z8u_A Tata-box-binding protei 26.0 88 0.003 22.2 4.2 27 37-63 159-186 (188)
119 1wcv_1 SOJ, segregation protei 25.9 1.2E+02 0.004 21.2 5.0 44 9-53 102-153 (257)
120 1zym_A Enzyme I; phosphotransf 25.8 56 0.0019 24.2 3.3 57 34-98 176-239 (258)
121 2re7_A Uncharacterized protein 25.7 76 0.0026 19.8 3.6 52 1-52 2-64 (134)
122 1ow1_A Smart/HDAC1 associated 25.6 65 0.0022 23.3 3.5 40 46-93 121-163 (195)
123 1ag9_A Flavodoxin; electron tr 25.4 60 0.0021 21.7 3.2 38 3-43 14-55 (175)
124 2ab1_A Hypothetical protein; H 25.3 18 0.0006 24.0 0.3 30 34-65 62-91 (122)
125 1hyq_A MIND, cell division inh 25.2 1.7E+02 0.0058 20.2 7.3 44 19-63 110-161 (263)
126 3c01_E Surface presentation of 25.2 73 0.0025 20.4 3.3 25 37-66 19-43 (98)
127 3icl_A EAL/ggdef domain protei 25.0 1.2E+02 0.0042 19.2 4.6 54 4-61 54-108 (171)
128 3t7y_A YOP proteins translocat 24.8 75 0.0026 20.3 3.3 26 36-66 33-58 (97)
129 3cio_A ETK, tyrosine-protein k 24.3 1.7E+02 0.0058 21.4 5.7 44 20-64 214-266 (299)
130 1g3q_A MIND ATPase, cell divis 24.3 1.7E+02 0.0057 19.8 6.6 44 19-63 111-162 (237)
131 3ea0_A ATPase, para family; al 24.2 1.7E+02 0.0058 19.8 7.1 53 8-63 109-169 (245)
132 1e4e_A Vancomycin/teicoplanin 24.0 48 0.0017 24.5 2.7 46 36-81 6-53 (343)
133 3dao_A Putative phosphatse; st 23.9 31 0.001 24.6 1.5 18 35-52 56-73 (283)
134 2hd3_A Ethanolamine utilizatio 23.9 70 0.0024 20.7 3.1 29 19-48 38-66 (103)
135 3epr_A Hydrolase, haloacid deh 23.8 29 0.00099 24.4 1.3 20 35-54 38-57 (264)
136 3dnp_A Stress response protein 23.7 43 0.0015 23.6 2.2 19 35-53 40-58 (290)
137 1j27_A Hypothetical protein TT 23.6 1.5E+02 0.0051 18.9 8.2 55 6-62 25-81 (102)
138 2amy_A PMM 2, phosphomannomuta 23.1 52 0.0018 22.8 2.6 13 35-47 39-51 (246)
139 3se7_A VANA; alpha-beta struct 23.1 51 0.0018 24.5 2.7 46 35-80 5-52 (346)
140 3tqt_A D-alanine--D-alanine li 23.1 49 0.0017 25.4 2.6 47 35-81 6-54 (372)
141 3e5n_A D-alanine-D-alanine lig 22.9 54 0.0019 25.1 2.8 48 35-82 24-73 (386)
142 2bmv_A Flavodoxin; electron tr 22.8 1.4E+02 0.0046 19.4 4.5 36 3-43 15-54 (164)
143 3mmj_A MYO-inositol hexaphosph 22.4 2.6E+02 0.009 21.3 6.7 81 4-84 78-169 (314)
144 3pjx_A Cyclic dimeric GMP bind 22.4 1.5E+02 0.0053 22.4 5.3 54 4-61 72-129 (430)
145 3r8n_F 30S ribosomal protein S 22.2 45 0.0015 21.0 1.9 48 35-82 5-64 (100)
146 3mf7_A CIS-3-chloroacrylic aci 22.1 1.8E+02 0.0063 19.4 9.6 63 4-66 18-97 (149)
147 2kjw_A TS9, 30S ribosomal prot 21.8 1.2E+02 0.004 19.2 3.8 47 23-70 36-83 (96)
148 2pq0_A Hypothetical conserved 21.0 40 0.0014 23.4 1.6 19 36-54 38-56 (258)
149 3k3p_A D-alanine--D-alanine li 21.0 74 0.0025 24.5 3.2 47 35-81 39-87 (383)
150 2k84_A P9; HOST-virus interact 21.0 31 0.001 17.6 0.7 13 93-105 18-30 (30)
151 3fvw_A Putative NAD(P)H-depend 20.8 1.1E+02 0.0039 20.7 3.9 26 3-30 18-43 (192)
152 3bfv_A CAPA1, CAPB2, membrane 20.4 1.4E+02 0.0049 21.4 4.6 43 20-63 192-243 (271)
153 3ej9_A Alpha-subunit of trans- 20.2 1.4E+02 0.0048 17.3 4.3 27 40-66 9-36 (76)
154 2bpo_A CPR, P450R, NADPH-cytoc 20.2 1.3E+02 0.0043 25.2 4.7 41 3-43 63-108 (682)
155 2kz0_A BOLA family protein; BO 20.1 1.1E+02 0.0036 18.5 3.2 45 18-65 20-67 (76)
No 1
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=100.00 E-value=2e-49 Score=277.21 Aligned_cols=109 Identities=27% Similarity=0.560 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL 80 (112)
Q Consensus 1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll 80 (112)
|+++++++.++++|+++||+||++|||++.+++|||||||||+|+||++|+|++|.+.+|+.|.+|+++||.++++|+|+
T Consensus 1 M~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl 80 (125)
T 2o5a_A 1 MSNQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLI 80 (125)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCEEESTTTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCccccccCCCCCCEEEE
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCEEEEeeChhhhhhcchhhhcccccc
Q psy8849 81 DLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109 (112)
Q Consensus 81 D~g~vvVHif~~e~R~~Y~LE~LW~~~~~ 109 (112)
||||||||||+||.|+|||||+||+++|.
T Consensus 81 D~GdVvVHif~~e~RefY~LE~LW~da~~ 109 (125)
T 2o5a_A 81 DLGDVVVHVFHKDERAYYNLEKLWGDAPT 109 (125)
T ss_dssp ECSSEEEEEEETTCGGGTSTTTCC---CB
T ss_pred eCCCEEEEeCCHHHHhHcCHHHHhCCCCc
Confidence 99999999999999999999999999975
No 2
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=100.00 E-value=9.1e-49 Score=275.39 Aligned_cols=110 Identities=43% Similarity=0.777 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL 80 (112)
Q Consensus 1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll 80 (112)
|+++++++.++++|+++||+||++|||++.++++||||||||+|+||++|+|++|.+.+|+.|..|+++||.++++|+|+
T Consensus 1 m~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl 80 (130)
T 2id1_A 1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLV 80 (130)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCcCccccCCCCCCEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCEEEEeeChhhhhhcchhhhc-cccccc
Q psy8849 81 DLGDIIIHIMNPYIRNMYNLEEIW-GEKEIK 110 (112)
Q Consensus 81 D~g~vvVHif~~e~R~~Y~LE~LW-~~~~~~ 110 (112)
||||||||||+||.|+|||||+|| +++|..
T Consensus 81 D~GdVvVHIf~~e~RefY~LE~LW~~da~~~ 111 (130)
T 2id1_A 81 DAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111 (130)
T ss_dssp EETTEEEEEECHHHHHHHCHHHHTTCCCCCC
T ss_pred ecCCEEEEcCCHHHHhHcCHHHHhcCCCccc
Confidence 999999999999999999999999 898753
No 3
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=100.00 E-value=2.2e-48 Score=275.24 Aligned_cols=109 Identities=35% Similarity=0.597 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLL 80 (112)
Q Consensus 1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~Wvll 80 (112)
|+++++++.|+++|+++||+||++|||++.++++||||||||+|.||++|+|++|.+.+|+.|..++++||.++++|+|+
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~~~WvLl 96 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATGYVSKIEGLPAADWVLL 96 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHHHCCCCEEESCSSCSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCccCcccCCCCCCEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCEEEEeeChhhhhhcchhhhcccccc
Q psy8849 81 DLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109 (112)
Q Consensus 81 D~g~vvVHif~~e~R~~Y~LE~LW~~~~~ 109 (112)
||||||||||+||.|+|||||+||+++|.
T Consensus 97 D~GdVvVHIf~~e~RefY~LE~LW~d~~~ 125 (136)
T 3ups_A 97 DAGDIIIHLFRPEVRSFYNLERMWGFGDE 125 (136)
T ss_dssp ECSSEEEEEECHHHHHHHHHHHHTTTTC-
T ss_pred eCCCEEEEeCCHHHHHHcCHHHHhCcCCc
Confidence 99999999999999999999999999975
No 4
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=83.91 E-value=3.6 Score=27.89 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCC-CC--------ccCEEEEEEcCCHHHHH
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNL-TN--------LFDRITIASGSSKRQIN 49 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~-~~--------~~dy~VIaT~~S~rh~~ 49 (112)
+++++++.|++.|.+.+ .++.++|++.. .. -+|.+||+|..-.-.+.
T Consensus 17 nT~~iA~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~p 72 (159)
T 3fni_A 17 YSDRLAQAIINGITKTG-VGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAAS 72 (159)
T ss_dssp THHHHHHHHHHHHHHTT-CEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHHH
T ss_pred HHHHHHHHHHHHHHHCC-CeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCCcc
Confidence 47899999999998865 47999999875 31 16889999876543333
No 5
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=79.73 E-value=10 Score=25.54 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCC-CCeEEEecCCCCCccCEE-EEEEcCCHHHHHHHHHHHHHH
Q psy8849 6 RQIIVIKILKDIKA-QDIKVYDTSNLTNLFDRI-TIASGSSKRQINALAVSIRKN 58 (112)
Q Consensus 6 l~~~i~~~l~~kka-~dI~vldv~~~~~~~dy~-VIaT~~S~rh~~aia~~v~~~ 58 (112)
++.++.+.+.+.+| -+|.=+++.....-..|. +..+|.|..++.+|...|.+.
T Consensus 17 il~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 17 ILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 56778888888888 678888888765444444 778999999999999988764
No 6
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=78.54 E-value=4.3 Score=27.42 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCCC--C------ccCEEEEEEcCC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNLT--N------LFDRITIASGSS 44 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~--~------~~dy~VIaT~~S 44 (112)
+++++++.|++.|.+.+ .++.++|++... . -+|.+||+|..-
T Consensus 13 nT~~~A~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty 62 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTG-VAVEMVDLRAVDPQELIEAVSSARGIVLGTPPS 62 (161)
T ss_dssp THHHHHHHHHHHHHHTT-CCEEEEETTTCCHHHHHHHHHHCSEEEEECCBS
T ss_pred HHHHHHHHHHHHHHhCC-CeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCc
Confidence 47899999999998864 479999998753 1 269999999764
No 7
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=77.80 E-value=4.7 Score=25.97 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGS 43 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~ 43 (112)
+++++++.|++.|.+.+ .++.++|+.+.. .-+|.+||+|..
T Consensus 11 nT~~iA~~ia~~l~~~g-~~v~~~~~~~~~~~~l~~~d~iiig~pt 55 (138)
T 5nul_A 11 NTEKMAELIAKGIIESG-KDVNTINVSDVNIDELLNEDILILGCSA 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCEEEEGGGCCHHHHTTCSEEEEEECC
T ss_pred hHHHHHHHHHHHHHHCC-CeEEEEEhhhCCHHHHhhCCEEEEEcCc
Confidence 37789999999998864 579999998753 346999999875
No 8
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=76.59 E-value=7.8 Score=26.73 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhc-CCCCeEEEecCCCCCccC--EEEEEEcCCHHHHHHHHHHHHHHHHhcCCCccccccc-CCCCEE
Q psy8849 4 NKRQIIVIKILKDI-KAQDIKVYDTSNLTNLFD--RITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGK-KSSEWL 78 (112)
Q Consensus 4 ~~l~~~i~~~l~~k-ka~dI~vldv~~~~~~~d--y~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~-~~~~Wv 78 (112)
++.++.|++-+.++ ...++.++.=-+.-...| .+|.+++...+..-..++.+.+.+|.. .+..+.|-. +++.|+
T Consensus 66 ~~~l~~I~~ea~~r~~~~~v~i~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~-aPiWKkE~~~dG~~Wv 143 (147)
T 2wp4_A 66 IRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQE-VPIWKKEFSSTGAEWV 143 (147)
T ss_dssp HHHHHHHHHHHHTSSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH-CCCEEEEECC------
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhh-CCEEEEEEeCCCCEEe
Confidence 34455665544444 567888876554433333 455566666666778899999999974 343344422 223686
No 9
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=75.46 E-value=7.8 Score=26.79 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHHHHHH-HHHHhcCCCCeEEEecCCCCCccC--EEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccC-CCCEEE
Q psy8849 5 KRQIIVI-KILKDIKAQDIKVYDTSNLTNLFD--RITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKK-SSEWLL 79 (112)
Q Consensus 5 ~l~~~i~-~~l~~kka~dI~vldv~~~~~~~d--y~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~-~~~Wvl 79 (112)
+.++.|+ ++...-...+|.++.=-+.-...| .+|.+++...+..-..++.+.+.+|.. .|..+.|-.. ++.|+-
T Consensus 59 ~~l~~I~~ea~~r~~~~~v~v~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~-aPiWKkE~~~dG~~Wv~ 136 (149)
T 2q5w_E 59 KKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEI-VPIWKKEIWEDGSKWQG 136 (149)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH-CCEEEEEEETTEEEECC
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhh-CCEEEEEEcCCCCEEec
Confidence 4445555 444555678888876555433333 455566666666778899999999974 3444444222 236863
No 10
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=74.58 E-value=12 Score=26.06 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=42.2
Q ss_pred HHHHHHH-HHHHhcCCCCeEEEecCCCCCc--cCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCC--CCEEE
Q psy8849 5 KRQIIVI-KILKDIKAQDIKVYDTSNLTNL--FDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKS--SEWLL 79 (112)
Q Consensus 5 ~l~~~i~-~~l~~kka~dI~vldv~~~~~~--~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~--~~Wvl 79 (112)
+.++.|+ ++...-...+|.++.=-+.-.. .-.+|.+++...+..-..++.+.+.+|.. .|..+.|-..+ +.|+-
T Consensus 65 ~~l~~I~~ea~~r~~l~~v~v~HR~G~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~-aPiWKkE~~~dG~~~Wv~ 143 (154)
T 2omd_A 65 KEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKR-VPIWKKEIFKEGKGEWVL 143 (154)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECEEEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHH-SCEEEEEEEC--------
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhh-CCEEEEEEeCCCCceecC
Confidence 3344554 4555556688888754443222 24566777777777888999999999974 34445553222 47974
No 11
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=71.60 E-value=9 Score=24.87 Aligned_cols=40 Identities=5% Similarity=0.174 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC--CC---ccCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL--TN---LFDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~--~~---~~dy~VIaT~~ 43 (112)
++++++.|++.|.+.+ .++.++|+.+. .. -+|.+||+|..
T Consensus 15 T~~~A~~ia~~l~~~g-~~v~~~~~~~~~~~~l~~~~d~ii~g~pt 59 (148)
T 3f6r_A 15 TESIAQKLEELIAAGG-HEVTLLNAADASAENLADGYDAVLFGCSA 59 (148)
T ss_dssp HHHHHHHHHHHHHTTT-CEEEEEETTTBCCTTTTTTCSEEEEEECE
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEehhhCCHhHhcccCCEEEEEecc
Confidence 6788999999887754 57999999863 22 45899999854
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=70.17 E-value=6.3 Score=28.50 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=32.7
Q ss_pred EEEecCCCC----CccCEEEEEEc-CCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 23 KVYDTSNLT----NLFDRITIASG-SSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 23 ~vldv~~~~----~~~dy~VIaT~-~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.++.+++.. -|..--|+||| +|..+++..++.+.+.+++.|.+
T Consensus 50 li~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 50 LIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp EEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHHHHHHHcCCc
Confidence 455555432 24456688999 99999999999999999998875
No 13
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=69.74 E-value=7.2 Score=26.99 Aligned_cols=73 Identities=8% Similarity=-0.009 Sum_probs=43.0
Q ss_pred HHHHHHHH-HHHhcCCCCeEEEecCCCCCcc--CEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCccccccc-CCCCEE
Q psy8849 5 KRQIIVIK-ILKDIKAQDIKVYDTSNLTNLF--DRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGK-KSSEWL 78 (112)
Q Consensus 5 ~l~~~i~~-~l~~kka~dI~vldv~~~~~~~--dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~-~~~~Wv 78 (112)
+.++.|++ +...-...+|.++.=-+.-... -.+|.+++...+..-..++.+.+.+|.. .|..+.|-. +++.|+
T Consensus 61 ~~l~~I~~ea~~r~~~~~v~v~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~-aPiWKkE~~~dG~~Wv 137 (150)
T 1fm0_E 61 KALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTR-APFWKREATPEGDRWV 137 (150)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH-SCEEEEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhc-CCEEEEEEcCCCCEec
Confidence 34455554 4444456778777554443333 3455666666666778899999999974 343344421 223686
No 14
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=65.08 E-value=13 Score=23.45 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGS 43 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~ 43 (112)
+++++++.+++.+.+. +.++.++|+.+.. .-+|.+||+|..
T Consensus 12 nT~~~a~~i~~~l~~~-g~~v~~~~~~~~~~~~l~~~d~vi~g~p~ 56 (137)
T 2fz5_A 12 NTEAMANEIEAAVKAA-GADVESVRFEDTNVDDVASKDVILLGCPA 56 (137)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEETTSCCHHHHHTCSEEEEECCC
T ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEcccCCHHHHhcCCEEEEEccc
Confidence 3678899999999875 4589999998752 236999999876
No 15
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=64.16 E-value=15 Score=23.64 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--C--c-cCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--N--L-FDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--~--~-~dy~VIaT~~ 43 (112)
++++++.|++.+.+.+ .++.++|+.+.. . - +|.+|++|..
T Consensus 14 t~~~a~~i~~~l~~~g-~~v~~~~~~~~~~~~l~~~~d~ii~~~p~ 58 (147)
T 1f4p_A 14 TEYTAETIARELADAG-YEVDSRDAASVEAGGLFEGFDLVLLGCST 58 (147)
T ss_dssp HHHHHHHHHHHHHHHT-CEEEEEEGGGCCSTTTTTTCSEEEEEECE
T ss_pred HHHHHHHHHHHHHhcC-CeeEEEehhhCCHHHhcCcCCEEEEEeCC
Confidence 6788899999888654 478888887632 2 2 7899998754
No 16
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=64.03 E-value=9.2 Score=27.22 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=26.3
Q ss_pred cCEEEEEEc-CCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 34 FDRITIASG-SSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 34 ~dy~VIaT~-~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
..-=|+||| +|...++..++.+.+.|++.|.+
T Consensus 57 ~SGKiv~TGaks~e~~~~a~~~i~~~L~~lg~~ 89 (180)
T 1ytb_A 57 ASGKMVVTGAKSEDDSKLASRKYARIIQKIGFA 89 (180)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 344577887 89999999999999999998864
No 17
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=62.24 E-value=11 Score=27.04 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=31.9
Q ss_pred EEEecCCCC----CccCEEEEEEc-CCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 23 KVYDTSNLT----NLFDRITIASG-SSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 23 ~vldv~~~~----~~~dy~VIaT~-~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.++.+++.. -|..--++||| +|..+++..++.+.+.+++.|.+
T Consensus 50 li~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~L~~lg~~ 97 (188)
T 2z8u_A 50 LVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKELKDAGID 97 (188)
T ss_dssp EEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 445555432 24456688885 89999999999999999998864
No 18
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=61.77 E-value=11 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.2
Q ss_pred ccCEEEEEEc-CCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 33 LFDRITIASG-SSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 33 ~~dy~VIaT~-~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
|..--++||| +|..+++..++.+.+.+++.|.+
T Consensus 60 F~SGKiv~TGakS~~~~~~a~~~i~~~L~~lG~~ 93 (182)
T 1ais_A 60 FSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVK 93 (182)
T ss_dssp CTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCeEEEecCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4455677886 69999999999999999998875
No 19
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=61.15 E-value=17 Score=24.50 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC-----------------------CCccCEEEEEEcCC----HHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL-----------------------TNLFDRITIASGSS----KRQINALAVSI 55 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~-----------------------~~~~dy~VIaT~~S----~rh~~aia~~v 55 (112)
++++++.+++.+.+..+-++.++|+.+. -.-+|.+|++|..= +.++++..+.+
T Consensus 15 t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 94 (198)
T 3b6i_A 15 IETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQT 94 (198)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEETTEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhcCCchHHHHHHHHHh
Confidence 6788999999998734568999999752 12468999998543 44555555554
Q ss_pred H
Q psy8849 56 R 56 (112)
Q Consensus 56 ~ 56 (112)
.
T Consensus 95 ~ 95 (198)
T 3b6i_A 95 G 95 (198)
T ss_dssp H
T ss_pred h
Confidence 4
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=59.92 E-value=33 Score=22.30 Aligned_cols=54 Identities=9% Similarity=0.012 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKN 61 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~ 61 (112)
+++++.+++.|.+.-...-.+.-+.+ ..|+|+..+.+...+..+++.+.+.+.+
T Consensus 63 d~~L~~ia~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~i~~~~~~ 116 (177)
T 3ign_A 63 DEVIRHTADVTRNNIRQSDSAGRYGG----EEFGIILPETDAESARVICERIREAIEK 116 (177)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEECSS----SEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecC----CeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 56788899998876554434444443 4677888888999999999999988876
No 21
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=58.48 E-value=34 Score=22.12 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKN 61 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~ 61 (112)
+++++.+++.|...-..+-.+.-+.+ ..|+|+..+.+...+..+++.+.+.+.+
T Consensus 68 d~~L~~~a~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~i~~~~~~ 121 (177)
T 3hva_A 68 DLLLGQLAGLMREQFGEEADLARFGD----SIFAALFKGKTPEQAQAALQRLLKKVEN 121 (177)
T ss_dssp HHHHHHHHHHHHHHHGGGCEEEECSS----SEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEecC----CeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 46777788887765333333444443 4677888889999999999999988875
No 22
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=58.38 E-value=53 Score=24.19 Aligned_cols=63 Identities=8% Similarity=0.136 Sum_probs=39.8
Q ss_pred CCeEEEecCCC---------CCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcccccccCCCCEEEEEcCCEEEEee
Q psy8849 20 QDIKVYDTSNL---------TNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIM 90 (112)
Q Consensus 20 ~dI~vldv~~~---------~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~EG~~~~~WvllD~g~vvVHif 90 (112)
-|++++|.+.. ...+|.+|+++-.+....+.+...+ +.+++.|.+. -.+|++=+
T Consensus 202 yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~-~~l~~~g~~~----------------~GvVlN~v 264 (286)
T 3la6_A 202 YDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSL-SRFEQNGIPV----------------KGVILNSI 264 (286)
T ss_dssp CSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHH-HHHHHTTCCC----------------CEEEEEEE
T ss_pred CCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHH-HHHHhCCCCE----------------EEEEEcCc
Confidence 69999999874 3567988888766655555554433 4555555332 23566666
Q ss_pred Chhhhhhcc
Q psy8849 91 NPYIRNMYN 99 (112)
Q Consensus 91 ~~e~R~~Y~ 99 (112)
.+....+|.
T Consensus 265 ~~~~~~~y~ 273 (286)
T 3la6_A 265 FRRASAYQD 273 (286)
T ss_dssp CCCCCTTSC
T ss_pred cccccCCcC
Confidence 666666554
No 23
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=56.76 E-value=17 Score=28.57 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCeE--EEecCCCC--------CccCEEEEEEcCCHHHHH
Q psy8849 2 NINKRQIIVIKILKDIKAQDIK--VYDTSNLT--------NLFDRITIASGSSKRQIN 49 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~--vldv~~~~--------~~~dy~VIaT~~S~rh~~ 49 (112)
+++++++.|++.|.+++.+.+. +.|++... .-+|.+|++|.+=...+.
T Consensus 278 nTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~ 335 (410)
T 4dik_A 278 FVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIH 335 (410)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSC
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCC
Confidence 3678999999999997765542 33444321 236999999998655443
No 24
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=55.92 E-value=60 Score=24.07 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcC-CCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHH
Q psy8849 5 KRQIIVIKILKDIK-AQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRK 57 (112)
Q Consensus 5 ~l~~~i~~~l~~kk-a~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~ 57 (112)
..++++.+++++.+ .....++++.+...-+|+|+.-.+.+...++++-..+++
T Consensus 38 ~~~~e~~~~l~~~~~~~~~~~Y~v~G~radaDlm~w~~~~~~~~lq~~~~~f~~ 91 (241)
T 3nn1_A 38 ISVAEVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMG 91 (241)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECTTTSTTCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccceEEEEEEeecccCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 45566666676533 345678899999888999999999999999998887764
No 25
>2vxh_A Chlorite dismutase; heme-based enzyme, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.10A {Azospira oryzae} PDB: 3q09_A* 3q08_A* 3m2s_A* 3m2q_A*
Probab=55.68 E-value=57 Score=24.34 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCe-EEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHH
Q psy8849 5 KRQIIVIKILKDIKAQDI-KVYDTSNLTNLFDRITIASGSSKRQINALAVSIRK 57 (112)
Q Consensus 5 ~l~~~i~~~l~~kka~dI-~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~ 57 (112)
+.++++.++++..+...+ ...++++...-+|+|+...+.+..+++++-..+++
T Consensus 46 ~~~~e~~~~~~~~~~~~~~~~y~~~glr~dADlm~w~~~~~~e~lq~~~~~f~r 99 (251)
T 2vxh_A 46 GAAEEVKKLIEKHKDNVLVDLYLTRGLETNSDFFFRINAYDLAKAQTFMREFRS 99 (251)
T ss_dssp THHHHHHHHHHHTTTTCEEEEEECTTTCSSCSEEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccceeeEEEEEeecCCccEEEEEeCCCHHHHHHHHHHHHh
Confidence 355666776766654444 58899999999999999999999999988777764
No 26
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=55.57 E-value=15 Score=27.42 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=25.7
Q ss_pred CEEEEEEc-CCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 35 DRITIASG-SSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 35 dy~VIaT~-~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.-=|+||| +|...++..++.+.+.|++.|.+
T Consensus 118 SGKiV~TGaks~e~a~~A~~~i~~~L~~lg~~ 149 (240)
T 1rm1_A 118 SGKMVVTGAKSEDDSKLASRKYARIIQKIGFA 149 (240)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 33467887 89999999999999999998864
No 27
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=55.03 E-value=32 Score=23.54 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC-----------------------C------CccCEEEEEEcCC----HHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL-----------------------T------NLFDRITIASGSS----KRQIN 49 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~-----------------------~------~~~dy~VIaT~~S----~rh~~ 49 (112)
++++++.+++.+.+. +-++.++|+.+. . .-+|.+||+|..= +.+++
T Consensus 20 T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk 98 (211)
T 1ydg_A 20 GYAMAQEAAEAGRAA-GAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGGATSQMR 98 (211)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEEETTEECHHHH
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCccccCccHHHH
Confidence 678999999999884 568999999873 1 1469999998543 45666
Q ss_pred HHHHHHH
Q psy8849 50 ALAVSIR 56 (112)
Q Consensus 50 aia~~v~ 56 (112)
+..+.+.
T Consensus 99 ~~ld~~~ 105 (211)
T 1ydg_A 99 AFIDTLG 105 (211)
T ss_dssp HHHHTTH
T ss_pred HHHHHhc
Confidence 6666554
No 28
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=54.80 E-value=21 Score=24.94 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC-CC--ccCEEEEEEcCC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL-TN--LFDRITIASGSS 44 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~-~~--~~dy~VIaT~~S 44 (112)
++++++.|++.|.+. +.++.++|+.+. .. -.|.+||++.+-
T Consensus 35 Te~~A~~ia~~l~~~-g~~v~v~~l~~~~~~l~~~d~vi~g~~Ty 78 (191)
T 1bvy_F 35 AEGTARDLADIAMSK-GFAPQVATLDSHAGNLPREGAVLIVTASY 78 (191)
T ss_dssp HHHHHHHHHHHHHTT-TCCCEEEEGGGSTTCCCSSSEEEEEECCB
T ss_pred HHHHHHHHHHHHHhC-CCceEEeeHHHhhhhhhhCCeEEEEEeec
Confidence 678889999988765 457888998862 22 257888887764
No 29
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=54.20 E-value=20 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcCCH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGSSK 45 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~S~ 45 (112)
++++++.+++.+.+..+.++.++|+.+.. .-+|.+|++|..-.
T Consensus 18 T~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~ 64 (188)
T 2ark_A 18 TKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNM 64 (188)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBT
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccC
Confidence 67888999999887344589999998753 24799999996543
No 30
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=53.33 E-value=5.6 Score=27.39 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCcccccccCCCCEEEEEcCCEEEEe-eChhhhhhcc
Q psy8849 55 IRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHI-MNPYIRNMYN 99 (112)
Q Consensus 55 v~~~lk~~~~~~~~~EG~~~~~WvllD~g~vvVHi-f~~e~R~~Y~ 99 (112)
+.+.++..| |+-+|+....+=...||=.|.|+. -.||.|||++
T Consensus 15 Llk~f~alG--PYlRE~qc~e~~ffFDCLaVCVn~k~aPEkREFWG 58 (134)
T 3rpj_A 15 LLKRFAQIG--PYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWG 58 (134)
T ss_dssp HHHHHHTTC--TTBCGGGC-CCEEEEEEEEEESCTTSCSSSCCEEE
T ss_pred HHHHHHHhC--chhchhhccCCCEEEeeeeEeccCCCChhhhhhhh
Confidence 455565555 788899988999999999999998 5799999964
No 31
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=52.34 E-value=8.9 Score=26.03 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=19.6
Q ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCc
Q psy8849 35 DRITIASGSSKRQINALAVSIRKNIKNINNNI 66 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~ 66 (112)
-.++||||++.+....+. +.+++.|++.
T Consensus 41 ~~iii~TgR~~~~~~~~~----~~l~~~gi~~ 68 (142)
T 2obb_A 41 HRLILWSVREGELLDEAI----EWCRARGLEF 68 (142)
T ss_dssp CEEEECCSCCHHHHHHHH----HHHHTTTCCC
T ss_pred CEEEEEeCCCcccHHHHH----HHHHHcCCCe
Confidence 478999999987666544 4456677653
No 32
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=50.95 E-value=51 Score=24.92 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCC--------CCccCEEEEEEcCCHHHHHHHHH
Q psy8849 7 QIIVIKILKDIKAQDIKVYDTSNL--------TNLFDRITIASGSSKRQINALAV 53 (112)
Q Consensus 7 ~~~i~~~l~~kka~dI~vldv~~~--------~~~~dy~VIaT~~S~rh~~aia~ 53 (112)
++.+.+.+.+...-|+++||.+.. -..+|++||.+..+..-++++..
T Consensus 141 l~~ll~~l~~~~~yD~VIID~pP~l~~~~~~aL~~aD~viip~~~~~~s~~~~~~ 195 (361)
T 3pg5_A 141 AGQLAHAMERDDRYDVIFFDVGPSLGPFNRTVLLGCDAFVTPTATDLFSFHAFGN 195 (361)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCSCCSHHHHHHHTTCSEEEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCEEEEECCCCcCHHHHHHHHHCCEEEEEecCChHHHHHHHH
Confidence 445555666555789999999973 14489999999988766665544
No 33
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=50.01 E-value=35 Score=19.73 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHH
Q psy8849 6 RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSI 55 (112)
Q Consensus 6 l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v 55 (112)
++..|++++.+.+ -+|.-+........+...+.....+..|+..+.+.+
T Consensus 18 ~L~~I~~~la~~~-inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L 66 (88)
T 2ko1_A 18 MTNQITGVISKFD-TNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKL 66 (88)
T ss_dssp HHHHHHHHHTTSS-SCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHH
Confidence 5678888888874 566666654333344444455677777777655544
No 34
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=49.35 E-value=14 Score=26.08 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.0
Q ss_pred EEEEEEcCCHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAV 53 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~ 53 (112)
.|+|||||+...++.+.+
T Consensus 36 ~v~iaTGR~~~~~~~~~~ 53 (244)
T 1s2o_A 36 YLAYATGRSYHSARELQK 53 (244)
T ss_dssp EEEEECSSCHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHH
Confidence 589999999877665544
No 35
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=49.17 E-value=20 Score=24.63 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH-HHhcCCCCeEEEecCCCC---------------------CccCEEEEEEcCCHHHH
Q psy8849 3 INKRQIIVIKI-LKDIKAQDIKVYDTSNLT---------------------NLFDRITIASGSSKRQI 48 (112)
Q Consensus 3 ~~~l~~~i~~~-l~~kka~dI~vldv~~~~---------------------~~~dy~VIaT~~S~rh~ 48 (112)
++.+++.+++. +.+. +.++.++|+.+.. .-+|.+||+|..=...+
T Consensus 18 t~~la~~i~~~~l~~~-g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~ 84 (197)
T 2vzf_A 18 TAKLAEYALAHVLARS-DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASY 84 (197)
T ss_dssp HHHHHHHHHHHHHHHS-SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBC
T ss_pred HHHHHHHHHHHHHHHC-CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCC
Confidence 56788888888 8776 4589999998752 14689999986544333
No 36
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=48.68 E-value=20 Score=24.14 Aligned_cols=53 Identities=4% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC---------------------C--CccCEEEEEEcCC----HHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL---------------------T--NLFDRITIASGSS----KRQINALAVSI 55 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~---------------------~--~~~dy~VIaT~~S----~rh~~aia~~v 55 (112)
++++++.+++.+.+. +-++.++|+.+. . .-+|.+||+|..= +.++++..+.+
T Consensus 19 T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 97 (200)
T 2a5l_A 19 TAEMARQIARGVEQG-GFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGT 97 (200)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHHHH
Confidence 678899999999874 458999999872 1 2469999998653 45566655555
Q ss_pred H
Q psy8849 56 R 56 (112)
Q Consensus 56 ~ 56 (112)
.
T Consensus 98 ~ 98 (200)
T 2a5l_A 98 S 98 (200)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=48.27 E-value=24 Score=26.53 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcCC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGSS 44 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~S 44 (112)
++++++.+++.+.+.+ .++.++|+.... .-+|.+||+|+.-
T Consensus 266 t~~lA~~i~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~ 314 (402)
T 1e5d_A 266 TEKMARVLAESFRDEG-CTVKLMWCKACHHSQIMSEISDAGAVIVGSPTH 314 (402)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEETTTSCHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECCcc
Confidence 6778888988887654 478999998753 3468999999643
No 38
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=48.22 E-value=28 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~ 43 (112)
++++++.|++.+.+. .+.++|+.+.. .-+|.+||+|..
T Consensus 15 T~~vA~~ia~~l~~~---~v~~~~~~~~~~~~l~~~d~ii~g~p~ 56 (169)
T 1obo_A 15 TESVAEIIRDEFGND---VVTLHDVSQAEVTDLNDYQYLIIGCPT 56 (169)
T ss_dssp HHHHHHHHHHHHCTT---TEEEEETTTCCGGGGGGCSEEEEEEEE
T ss_pred HHHHHHHHHHHhCcC---CcEEEEcccCCHHHHhhCCEEEEEEee
Confidence 677888888888653 77888887642 124777777655
No 39
>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: d.58.4.10
Probab=47.69 E-value=84 Score=23.38 Aligned_cols=39 Identities=5% Similarity=0.064 Sum_probs=33.0
Q ss_pred cCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHH
Q psy8849 17 IKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRK 57 (112)
Q Consensus 17 kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~ 57 (112)
.+.....++|+.+.. +|+|+.-.+.+..+++++-..+.+
T Consensus 57 ~~~~~~~~Y~v~G~r--ADlm~w~~~~~~~~Lq~~~~~~~r 95 (249)
T 1vdh_A 57 AGQGSYGIYQVVGHK--ADLLFLNLRPGLDPLLEAEARLSR 95 (249)
T ss_dssp TTSCEEEEEEECSTT--CSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCc--ccEEEEEeCCCHHHHHHHHHHHHh
Confidence 445566789999987 999999999999999988777765
No 40
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=47.60 E-value=21 Score=23.05 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.1
Q ss_pred ccCEEEEEEcCCHHHHHHHHHHHH
Q psy8849 33 LFDRITIASGSSKRQINALAVSIR 56 (112)
Q Consensus 33 ~~dy~VIaT~~S~rh~~aia~~v~ 56 (112)
=+|+.|||.|.+...+...++.+.
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~ 36 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLK 36 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCCEEEEEECccHHHHHHHHHHHH
Confidence 369999999999998888777664
No 41
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=46.92 E-value=39 Score=22.91 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCCccC--EEEEEEcCCHHHHHHHHHHHHHHHHhcCCCccccc
Q psy8849 5 KRQIIVIKILKDIKAQDIKVYDTSNLTNLFD--RITIASGSSKRQINALAVSIRKNIKNINNNIVNIE 70 (112)
Q Consensus 5 ~l~~~i~~~l~~kka~dI~vldv~~~~~~~d--y~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~E 70 (112)
++.+...++...-...++.++.=-+.-...| .+|.+++...+..-..++.+.+.||.. .|..+.|
T Consensus 65 ~l~~I~~ea~~r~~l~~v~i~HR~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~-~PiWKkE 131 (135)
T 4ap8_A 65 EVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAK-VPIWKKE 131 (135)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEEECEEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHHHH-SCEEEEE
T ss_pred HHHHHHHHHHHhcCCcceeehhhcccccCCCeEEEEEEEccCHHHHHHHHHHHHHHHhhc-CCceece
Confidence 4444444445555668888876555433343 444555555555778888999999874 3433433
No 42
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=46.84 E-value=30 Score=22.06 Aligned_cols=31 Identities=16% Similarity=0.002 Sum_probs=24.6
Q ss_pred cCCCCeEEEecCCCCCccCEEEEEEcCCHHHH
Q psy8849 17 IKAQDIKVYDTSNLTNLFDRITIASGSSKRQI 48 (112)
Q Consensus 17 kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~ 48 (112)
.+++-.+++|.=+ ....|++++++|++.|+.
T Consensus 31 ~~g~~~VAvD~vG-AG~Ge~Vlv~~GSaAR~~ 61 (91)
T 2rcf_A 31 PGAPRQVAVDAIG-CIPGDWVLCVGSSAAREA 61 (91)
T ss_dssp TTSCCEEEEESSC-CCTTCEEEEEETTHHHHH
T ss_pred CCCCEEEEEECCC-CCCCCEEEEeCCHHHHhh
Confidence 3567788888776 568899999999887764
No 43
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=46.63 E-value=66 Score=21.83 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCC
Q psy8849 7 QIIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGSSKRQINALAVSIRKNIKNINN 64 (112)
Q Consensus 7 ~~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~ 64 (112)
++.+.+.+ .++.-|++++|.+... ..+|++||.+-.+..-++++.. +.+.+++.+.
T Consensus 120 l~~~l~~l-~~~~yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~-~~~~~~~~~~ 183 (254)
T 3kjh_A 120 LGSVVSAL-FLDKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLN-IEKLAGDLGI 183 (254)
T ss_dssp HHHHHHHH-HHTCCSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHH-HHHHHHHHTC
T ss_pred HHHHHHHh-ccCCCCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHH-HHHHHHHcCC
Confidence 34444444 2456799999998742 4579999999988888777654 4446666554
No 44
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=46.05 E-value=38 Score=23.59 Aligned_cols=53 Identities=8% Similarity=0.067 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC---------CccCEEEEEEc----CCHHHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT---------NLFDRITIASG----SSKRQINALAVSIR 56 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~---------~~~dy~VIaT~----~S~rh~~aia~~v~ 56 (112)
+..+++.+++.+.+. +-+|.++|+.+.. ..+|.+||+|. .-+.++++..|.+.
T Consensus 32 ~~~l~~~~~~~~~~~-g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 32 NDTLTEVADGTLRDL-GHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 456888888888877 6789999998632 45699999995 45667777766654
No 45
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein structure initiative, MCSG, PSI; HET: P33; 1.75A {Geobacillus stearothermophilus} SCOP: d.58.4.10
Probab=45.93 E-value=90 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=32.7
Q ss_pred cCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHH
Q psy8849 17 IKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRK 57 (112)
Q Consensus 17 kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~ 57 (112)
.+.....++++.+.. +|+|+...+.+..+++++-..+++
T Consensus 53 ~~~~~~~~Y~v~G~r--aDlm~w~~~~~~~~lq~~~~~~~r 91 (248)
T 1t0t_V 53 EKQGSHAVYTIVGQK--ADILFMILRPTLDELHEIETALNK 91 (248)
T ss_dssp TTSCEEEEEEECSSS--CSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCc--ccEEEEEeCCCHHHHHHHHHHHHh
Confidence 445566789999987 999999999999999988777764
No 46
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=45.66 E-value=70 Score=21.88 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNI 62 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~ 62 (112)
+++++.+++.|.+.-...=.+.-+.+ -.|.|+..+.+...+..+++.+.+.+...
T Consensus 57 D~vL~~va~~L~~~~~~~~~v~R~gG----DEF~ill~~~~~~~~~~~~~~i~~~i~~~ 111 (179)
T 3tvk_A 57 DVVLRTLATYLASWTRDYETVYRYGG----EEFIIIVKAANDEEACRAGVRICQLVDNH 111 (179)
T ss_dssp HHHHHHHHHHHHHTSCTTSCEEECSS----SEEEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhHhcCCcccEEEEccC----CEEEEEcCCCCHHHHHHHHHHHHHHHHcC
Confidence 47888999999876543333444443 25778889999999999999998888663
No 47
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=45.53 E-value=50 Score=22.67 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCcc--CEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCccccc
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLF--DRITIASGSSKRQINALAVSIRKNIKNINNNIVNIE 70 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~--dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~~~E 70 (112)
++.++.|++-+.++. .+|.++.=-+.-... -.+|.+++...+..-..++.+.+.+|.. .|..+.|
T Consensus 59 ~~~l~~I~~ea~~~~-~~v~i~HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~-~PiWKkE 125 (148)
T 3rpf_A 59 KTWFEKWHHKAKDLG-VVLKMAHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHN-APIWKYD 125 (148)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH-SCEEEEE
T ss_pred HHHHHHHHHHHhhcC-CEEEEEEEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 345566666666654 366666433332222 3455566666666778888899999864 4444444
No 48
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=44.70 E-value=9.9 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=15.6
Q ss_pred CEEEEEEcCCHHHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAVSI 55 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~v 55 (112)
-.++||||+|.|....++..+
T Consensus 41 i~v~l~Tgr~~r~~~~~~~~l 61 (268)
T 3qgm_A 41 KKIIFVSNNSTRSRRILLERL 61 (268)
T ss_dssp CEEEEEECCSSSCHHHHHHHH
T ss_pred CeEEEEeCcCCCCHHHHHHHH
Confidence 468999998887777665544
No 49
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=44.59 E-value=17 Score=25.91 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=15.2
Q ss_pred CEEEEEEcCCHHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAVS 54 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~ 54 (112)
-.|+|||||+...++.+...
T Consensus 35 i~v~iaTGR~~~~~~~~~~~ 54 (268)
T 1nf2_A 35 CYVVFASGRMLVSTLNVEKK 54 (268)
T ss_dssp SEEEEECSSCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHH
Confidence 46799999998877765543
No 50
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=44.53 E-value=39 Score=19.13 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHHHHh-cCCCcc----cccccCCCCEE
Q psy8849 42 GSSKRQINALAVSIRKNIKN-INNNIV----NIEGKKSSEWL 78 (112)
Q Consensus 42 ~~S~rh~~aia~~v~~~lk~-~~~~~~----~~EG~~~~~Wv 78 (112)
|+|..|-+++++.|-+.+.+ .|.++- .++-.+.++|-
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~ 54 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYG 54 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeE
Confidence 89999999999999999976 577532 22334445564
No 51
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=44.20 E-value=61 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCCCCc--cCEEEEEEcCC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNLTNL--FDRITIASGSS 44 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~~~--~dy~VIaT~~S 44 (112)
+++++++.|++.|.+. +.++.++|......+ .|.+||+|..-
T Consensus 14 nT~~~A~~ia~~l~~~-g~~v~~~~~~~~~~l~~~d~vi~g~pt~ 57 (147)
T 2hna_A 14 GAEYVAEHLAEKLEEA-GFTTETLHGPLLEDLPASGIWLVISSTH 57 (147)
T ss_dssp CCHHHHHHHHHHHHHT-TCCEEEECCTTSCSSCSEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHC-CCceEEecCCCHHHcccCCeEEEEECcc
Confidence 4678999999999875 457888887654444 46677776653
No 52
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=43.70 E-value=26 Score=23.68 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC--------------------C----CccCEEEEEEcC----CHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL--------------------T----NLFDRITIASGS----SKRQINALAVS 54 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~--------------------~----~~~dy~VIaT~~----S~rh~~aia~~ 54 (112)
++++++.+++.+.+. +-++.++|+.+. . .-+|.+||+|.. =+.++++..+.
T Consensus 17 T~~la~~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~ 95 (199)
T 2zki_A 17 IVELAKEIGKGAEEA-GAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDT 95 (199)
T ss_dssp HHHHHHHHHHHHHHH-SCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCccccCccHHHHHHHHH
Confidence 678899999999885 457999999874 0 136899999854 34556666555
Q ss_pred HH
Q psy8849 55 IR 56 (112)
Q Consensus 55 v~ 56 (112)
+.
T Consensus 96 ~~ 97 (199)
T 2zki_A 96 TA 97 (199)
T ss_dssp TH
T ss_pred hh
Confidence 53
No 53
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=43.67 E-value=3.8 Score=20.52 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=4.6
Q ss_pred hhhcchhh
Q psy8849 95 RNMYNLEE 102 (112)
Q Consensus 95 R~~Y~LE~ 102 (112)
++||+||.
T Consensus 17 keyY~L~~ 24 (26)
T 2c5k_P 17 REFYNLEN 24 (26)
T ss_dssp HHHHHC--
T ss_pred HHHHhhhc
Confidence 57888874
No 54
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=43.51 E-value=36 Score=22.65 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--C--ccCEEEEEEcCC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--N--LFDRITIASGSS 44 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--~--~~dy~VIaT~~S 44 (112)
++++++.|++.|.+.+ .++.++|+.+.. . -.|.+||++..-
T Consensus 23 T~~~A~~ia~~l~~~g-~~v~~~~~~~~~~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 23 ARRVAEALRDDLLAAK-LNVKLVNAGDYKFKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp HHHHHHHHHHHHHHHT-CCCEEEEGGGCCGGGGGGCSEEEEEEECB
T ss_pred HHHHHHHHHHHHHHCC-CceEEeehhhCCHHHhccCCeEEEEEccc
Confidence 6788899999887653 467888887532 1 257888887765
No 55
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=43.20 E-value=11 Score=26.49 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=14.6
Q ss_pred EEEEEEcCCHHHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAVSI 55 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~~v 55 (112)
.++||||+|.|....+...+
T Consensus 40 ~v~laTgrs~r~~~~~~~~l 59 (266)
T 3pdw_A 40 PYLFVTNNSSRTPKQVADKL 59 (266)
T ss_dssp CEEEEESCCSSCHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHH
Confidence 57899998887776665544
No 56
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=42.87 E-value=15 Score=26.49 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=14.7
Q ss_pred CEEEEEEcCCHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAV 53 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~ 53 (112)
=.|+|||||+...++.+.+
T Consensus 43 ~~~~iaTGR~~~~~~~~~~ 61 (275)
T 1xvi_A 43 VPVILCSSKTSAEMLYLQK 61 (275)
T ss_dssp CCEEEECSSCHHHHHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHH
Confidence 3689999999887766544
No 57
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=41.81 E-value=20 Score=25.15 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=14.9
Q ss_pred EEEEEEcCCHHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAVS 54 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~~ 54 (112)
.++||||++...++.+++.
T Consensus 40 ~~~i~TGr~~~~~~~~~~~ 58 (227)
T 1l6r_A 40 TVSLLSGNVIPVVYALKIF 58 (227)
T ss_dssp EEEEECSSCHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHH
Confidence 6899999998887766543
No 58
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=41.64 E-value=56 Score=21.63 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCCc
Q psy8849 5 KRQIIVIKILKDIKAQDIKVYDTSNLTNL 33 (112)
Q Consensus 5 ~l~~~i~~~l~~kka~dI~vldv~~~~~~ 33 (112)
.+...++..|.. ++..|.++|.....+.
T Consensus 17 t~a~~la~~la~-~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 17 TAVINIATALSR-SGYNIAVVDTDPQMSL 44 (206)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEECCTTCHH
T ss_pred HHHHHHHHHHHH-CCCeEEEEECCCCCCH
Confidence 345566777776 7889999999765433
No 59
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=41.40 E-value=37 Score=24.92 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=30.8
Q ss_pred EEEecCCCC----CccCEEEEEE-cCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 23 KVYDTSNLT----NLFDRITIAS-GSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 23 ~vldv~~~~----~~~dy~VIaT-~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.++.+++.. -|..-=|+|| ++|..+++..++.+.+.|++.|.+
T Consensus 80 lv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~L~~lG~~ 127 (218)
T 3eik_A 80 VIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFN 127 (218)
T ss_dssp EEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 455555432 2344456677 779999999999999999998874
No 60
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=40.59 E-value=55 Score=21.80 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcC-CCCeEEEecCCC
Q psy8849 3 INKRQIIVIKILKDIK-AQDIKVYDTSNL 30 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kk-a~dI~vldv~~~ 30 (112)
+..+++.+++.+.+.+ +.+|.++|+.+.
T Consensus 18 t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 18 SGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 5678889999998875 457999999864
No 61
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=40.11 E-value=38 Score=22.29 Aligned_cols=53 Identities=6% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKN 61 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~ 61 (112)
+++++.+++.|...-.. -.+.-+.+ ..|+|+..+.+...+..+++.+.+.+.+
T Consensus 54 D~~L~~ia~~L~~~~~~-~~v~R~~~----deF~ill~~~~~~~~~~~~~~l~~~~~~ 106 (176)
T 3hvw_A 54 NDLMLEARDRIRAELPD-FTLYKISP----TRFGLLLPRQQQEETESVCLRLLRAFES 106 (176)
T ss_dssp HHHHHHHHHHHHHHCTT-SCEEEEET----TEEEEEEEGGGGGGHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCC-CeEEEecC----CEEEEEeCCCCHHHHHHHHHHHHHHHhC
Confidence 46788889988876544 33444433 3566777787777899999988887754
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.64 E-value=17 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=23.2
Q ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 35 DRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
.|-|.|. .|..|++.+|..|.+.+++..
T Consensus 18 ~Y~i~g~-e~ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 18 VIKLGGY-ESEEYLQRVASYINNKITEFN 45 (138)
T ss_dssp EEEECSC-SCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 5777776 589999999999999998743
No 63
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=39.54 E-value=47 Score=18.61 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=23.3
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 39 IASGSSKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 39 IaT~~S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
+..|+|..|-+++++.|-+.+.+ .|.++
T Consensus 7 ~~~Grs~eqk~~L~~~it~~~~~~lg~p~ 35 (65)
T 3ry0_A 7 LLEGRSPQEVAALGEALTAAAHETLGTPV 35 (65)
T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 34689999999999999999987 57653
No 64
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=39.12 E-value=20 Score=25.22 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.3
Q ss_pred EEEEEEcCCHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAV 53 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~ 53 (112)
.++||||++...++.+.+
T Consensus 35 ~~~i~Tgr~~~~~~~~~~ 52 (249)
T 2zos_A 35 EIIFNSSKTRAEQEYYRK 52 (249)
T ss_dssp EEEEBCSSCHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHH
Confidence 689999999887766554
No 65
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=38.27 E-value=25 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.8
Q ss_pred CEEEEEEcCCHHHHHHHH--HHH
Q psy8849 35 DRITIASGSSKRQINALA--VSI 55 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia--~~v 55 (112)
-.|+|||||+...+..+. +.+
T Consensus 62 i~v~iaTGR~~~~~~~~~~~~~l 84 (301)
T 2b30_A 62 YMVSICTGRSKVGILSAFGEENL 84 (301)
T ss_dssp CEEEEECSSCHHHHHHHHCHHHH
T ss_pred CEEEEEcCCCHHHHHHHhhHHhh
Confidence 479999999988877776 554
No 66
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=37.85 E-value=37 Score=22.32 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~ 43 (112)
++++++.|++.+... .++.++|+.+.. .-+|.+|++|..
T Consensus 14 T~~vA~~ia~~l~~~--~~v~~~~~~~~~~~~l~~~d~ii~g~pt 56 (169)
T 1czn_A 14 TQTIAESIQQEFGGE--SIVDLNDIANADASDLNAYDYLIIGCPT 56 (169)
T ss_dssp HHHHHHHHHHHHTST--TTEEEEEGGGCCGGGGGGCSEEEEECCE
T ss_pred HHHHHHHHHHHhCcc--cceEEEEhhhCCHhHHhhCCEEEEEecc
Confidence 677888888888543 368888887532 235788887755
No 67
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=37.36 E-value=1.3e+02 Score=22.50 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNI 62 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~ 62 (112)
+++++.+++.|.+.-..+-.+.-+.+ ..|+|+..+.+..++..+++.+.+.+.+.
T Consensus 237 D~lL~~va~~L~~~~~~~d~v~R~gg----deF~ill~~~~~~~~~~~~~~l~~~l~~~ 291 (342)
T 3ezu_A 237 DRILQLVAETITSHLRRSDVVGRYDG----DEFVVYLSPVEPASLRTVAENLRRSIEEE 291 (342)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEECSS----SEEEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEcC----CEEEEEECCCCHHHHHHHHHHHHHHHhcc
Confidence 57888999999876554444444443 35667778888889999999999988764
No 68
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=37.33 E-value=51 Score=23.20 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--------------------------------CccCEEEEEEcC----CHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--------------------------------NLFDRITIASGS----SKR 46 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--------------------------------~~~dy~VIaT~~----S~r 46 (112)
+..+++.+++.+.+..+-+|.++|+.+.. .-+|.+||+|.. =+.
T Consensus 17 T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~ 96 (242)
T 1sqs_A 17 TLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSV 96 (242)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCH
Confidence 56788899999887635689999988531 235889999954 456
Q ss_pred HHHHHHHHH
Q psy8849 47 QINALAVSI 55 (112)
Q Consensus 47 h~~aia~~v 55 (112)
++++..+.+
T Consensus 97 ~lK~~iDr~ 105 (242)
T 1sqs_A 97 DTKNFIERI 105 (242)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 666666655
No 69
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=37.26 E-value=55 Score=19.19 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCC
Q psy8849 6 RQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINN 64 (112)
Q Consensus 6 l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~ 64 (112)
++..+.+++.+.++ +|.-++.......+-..+.....+..|+..+.+.+.+.-.+.+.
T Consensus 18 ila~vt~~la~~~~-NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~ 75 (91)
T 1zpv_A 18 IVAGVSGKIAELGL-NIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNV 75 (91)
T ss_dssp HHHHHHHHHHHTTC-EEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHcCC-CEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 57788999999854 56555443222333333333445556888888877765555443
No 70
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=36.95 E-value=15 Score=24.90 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 30 LTNLFDRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 30 ~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
....+|++|.-+|++...+..+...|.+.+++.|
T Consensus 176 ~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~~~ 209 (211)
T 3asz_A 176 TKRYADVIVPRGGQNPVALEMLAAKALARLARMG 209 (211)
T ss_dssp GGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC--
T ss_pred chhcCeEEEeCCCcchHHHHHHHHHHHHHHHhhc
Confidence 3467899999999988888888888888776654
No 71
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=36.56 E-value=52 Score=17.79 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=22.7
Q ss_pred EEcCCHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 40 ASGSSKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 40 aT~~S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
..|+|..|-+++++.|-+.+.+ .|+++
T Consensus 8 ~~grs~e~k~~l~~~i~~~l~~~lg~p~ 35 (62)
T 1otf_A 8 IEGRTDEQKETLIRQVSEAMANSLDAPL 35 (62)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3589999999999999999987 57764
No 72
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=35.77 E-value=28 Score=26.21 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=33.8
Q ss_pred EEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEEEcC
Q psy8849 36 RITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLLDLG 83 (112)
Q Consensus 36 y~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~WvllD~g 83 (112)
..||+=|.|..|==++ +..|.+.|++.|....-+--.+++.|...+..
T Consensus 6 v~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~ 55 (357)
T 4fu0_A 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGE 55 (357)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSC
T ss_pred EEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCC
Confidence 4688889998885444 56788888888876554444467889887653
No 73
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=35.59 E-value=8.8 Score=26.02 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=24.0
Q ss_pred cCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 34 FDRITIASGSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 34 ~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.|.+||+||.+.+. +..++.+.|++.|+.
T Consensus 68 pevliiGTG~~~~~---l~p~l~~~l~~~GI~ 96 (135)
T 2fvt_A 68 IDTLIVGTGADVWI---APRQLREALRGVNVV 96 (135)
T ss_dssp CSEEEEECTTSCCC---CCHHHHHHHHTTTCE
T ss_pred CCEEEEcCCCCCCc---CCHHHHHHHHHcCCE
Confidence 59999999999886 456788889888874
No 74
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=35.54 E-value=57 Score=24.39 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcC----CHHHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGS----SKRQINALAVSIR 56 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~----S~rh~~aia~~v~ 56 (112)
++++++.|++.+.+. +.++.++|+.+.. .-+|.+||+|.. -+..+++..+.+.
T Consensus 270 T~~la~~i~~~l~~~-g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~ 334 (404)
T 2ohh_A 270 TRKMAHAIAEGAMSE-GVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLR 334 (404)
T ss_dssp HHHHHHHHHHHHHTT-TCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhh
Confidence 678899999998874 4579999998753 246999999863 2235666555543
No 75
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=35.31 E-value=22 Score=24.15 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC----------------------CccCEEEEEEcCC----HHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT----------------------NLFDRITIASGSS----KRQINALAVSI 55 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~----------------------~~~dy~VIaT~~S----~rh~~aia~~v 55 (112)
++.+++.+++.+. .+-++.++|+.+.. .-+|.+||+|..= +.++++..+.+
T Consensus 22 t~~la~~i~~~l~--~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~ 98 (193)
T 1rtt_A 22 NSAALQEAIGLVP--PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDWA 98 (193)
T ss_dssp HHHHHHHHHTTCC--TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHHh
Confidence 4556666666665 45689999998732 1358888888543 33444444443
No 76
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=35.13 E-value=30 Score=23.16 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCC---CC--ccCEEEEEEcC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNL---TN--LFDRITIASGS 43 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~---~~--~~dy~VIaT~~ 43 (112)
+++++++.|++.|.+. .+.++++.+. .. -.|.+|+++..
T Consensus 12 nT~~vA~~ia~~l~~~---~~~~~~~~~~~~~~~l~~~d~ii~g~pt 55 (173)
T 2fcr_A 12 NTTEVADFIGKTLGAK---ADAPIDVDDVTDPQALKDYDLLFLGAPT 55 (173)
T ss_dssp HHHHHHHHHHHHHGGG---BCCCEEGGGCSCGGGGGGCSEEEEEEEC
T ss_pred hHHHHHHHHHHHhccC---CcEEEehhhcCChhHHccCCEEEEEEee
Confidence 3678888998888764 5566776654 11 25888888766
No 77
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=35.01 E-value=68 Score=23.25 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC-------------------CccCEEEEEEcCC----HHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT-------------------NLFDRITIASGSS----KRQINALAVSI 55 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~-------------------~~~dy~VIaT~~S----~rh~~aia~~v 55 (112)
+..+++.+++.+.+. +-++.++|+.+.. .-+|.+||+|..= +.++++..+.+
T Consensus 50 t~~La~~~~~~l~~~-g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l 124 (247)
T 2q62_A 50 SRLLAEEARRLLEFF-GAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWI 124 (247)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHh
Confidence 567888888888764 4589999998753 1258888888544 34444444433
No 78
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=34.68 E-value=56 Score=17.63 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=22.6
Q ss_pred EEcCCHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 40 ASGSSKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 40 aT~~S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
..|+|..|-+++++.|-+.+.+ .|.++
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~~lg~~~ 35 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKETTGASE 35 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3589999999999999999987 57764
No 79
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=34.46 E-value=31 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.8
Q ss_pred EEEEEEcCCHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAV 53 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~ 53 (112)
.+++|||++...++.+..
T Consensus 38 ~v~i~TGR~~~~~~~~~~ 55 (231)
T 1wr8_A 38 PIMLVTGNTVQFAEAASI 55 (231)
T ss_dssp CEEEECSSCHHHHHHHHH
T ss_pred EEEEEcCCChhHHHHHHH
Confidence 358999999888776544
No 80
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=34.21 E-value=20 Score=26.25 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCCCC------ccCEEEEEE---cCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNLTN------LFDRITIAS---GSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~~------~~dy~VIaT---~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
++++.++.+++-+++.+..+|+|--.++.+. +.+-+|++| |.+......+.++.++.|++.|.+
T Consensus 35 NT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~ 107 (206)
T 1t57_A 35 NTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVN 107 (206)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccCCEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCE
Confidence 5788899999999999999999998887542 233466666 555565666677788888887764
No 81
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=34.20 E-value=37 Score=25.37 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~ 43 (112)
++++++.+++.|.+.+ .++.++|+.... .-+|.+||+|..
T Consensus 265 T~~lA~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~ 312 (398)
T 1ycg_A 265 TEKMAHALMDGLVAGG-CEVKLFKLSVSDRNDVIKEILDARAVLVGSPT 312 (398)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEGGGSCHHHHHHHHHHCSEEEEECCC
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECCc
Confidence 6788899999887654 578999998643 246999999854
No 82
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=33.91 E-value=86 Score=19.50 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHH
Q psy8849 8 IIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIR 56 (112)
Q Consensus 8 ~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~ 56 (112)
+.|++.+.+.-..-+++++-.+--+-.+.-||-+.-|.+++..+-+.|.
T Consensus 19 eeI~~~I~~~l~rGvT~~~g~G~Ys~~~~~vl~~Vv~r~e~~~l~~~I~ 67 (96)
T 3hlu_A 19 KIIADRMLQELDLGVTMLQAVGAYKNNETEVIMCVMRKATLVKVRNLLK 67 (96)
T ss_dssp HHHHHHHHHHSCCCCEEEECEESSSSSCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEEcccCCCEEEEEEEecHHHHHHHHHHHH
Confidence 5778888888889999999887544456777777788888887766554
No 83
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A
Probab=33.87 E-value=59 Score=24.44 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcC-CCCeEEEecCCCCCccC---------EEEEEEcCCHHHHHHHHHHHHHHHHhcCC---Cc--ccc
Q psy8849 5 KRQIIVIKILKDIK-AQDIKVYDTSNLTNLFD---------RITIASGSSKRQINALAVSIRKNIKNINN---NI--VNI 69 (112)
Q Consensus 5 ~l~~~i~~~l~~kk-a~dI~vldv~~~~~~~d---------y~VIaT~~S~rh~~aia~~v~~~lk~~~~---~~--~~~ 69 (112)
..++.|++.+.+.. .++ .+-++++...++. ..|+.||--...+.-.++++.+.....+. .. .+.
T Consensus 52 ~R~~~iA~~~~~~~~l~~-~~~~~r~~~~~tG~y~~ykG~~Vsv~~tGiG~psaaI~~~ELi~~~~~~~~~~~~iIriGt 130 (297)
T 3p0f_A 52 NRMKAFALFMHKELGFEE-AEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTIIRIGT 130 (297)
T ss_dssp HHHHHHHHHHHHHHCCCC-CCCCTTSCCTTSSSCCEEEETTEEEEECCSSHHHHHHHHHHHHHHHHHTTCBSCEEEEEEE
T ss_pred HHHHHHHHHHhhhhcccc-ccceecceEEEEEEEeeECCeEEEEEECCCCHHHHHHHHHHHHHhccccccCcceEEEEEe
Confidence 45678889987754 455 4456666665664 58899999999999889988887742222 12 223
Q ss_pred cccCCCCEEEEEcCCEEE
Q psy8849 70 EGKKSSEWLLLDLGDIII 87 (112)
Q Consensus 70 EG~~~~~WvllD~g~vvV 87 (112)
-|.=. +..|||||
T Consensus 131 aGgl~-----l~vGDvVI 143 (297)
T 3p0f_A 131 SGGIG-----IAPGTVVI 143 (297)
T ss_dssp EEESS-----SCTTCEEE
T ss_pred ecccc-----ccCCcEEe
Confidence 33211 77788886
No 84
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=32.88 E-value=32 Score=21.67 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=24.2
Q ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHhc
Q psy8849 35 DRITIASGSSKRQINALAVSIRKNIKNI 62 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~v~~~lk~~ 62 (112)
+|-|-|...+..|++.+|..|.+.+++.
T Consensus 15 ~Y~l~~~~~~ee~l~~aA~~vd~~~~~i 42 (104)
T 1t3u_A 15 EYCINCPDDERANLESAARYLDGKMREI 42 (104)
T ss_dssp EEEECCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5777777788999999999999999874
No 85
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=32.88 E-value=56 Score=20.93 Aligned_cols=50 Identities=12% Similarity=0.287 Sum_probs=36.1
Q ss_pred ccCEEEEEEcC-CHHHHHHHHHHHHHHHHhcCCCc------------ccccccCCCCEEEEEc
Q psy8849 33 LFDRITIASGS-SKRQINALAVSIRKNIKNINNNI------------VNIEGKKSSEWLLLDL 82 (112)
Q Consensus 33 ~~dy~VIaT~~-S~rh~~aia~~v~~~lk~~~~~~------------~~~EG~~~~~WvllD~ 82 (112)
..+.++|.... +..++.++.+.+...+.+.|... +.+.....|..+++++
T Consensus 9 ~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f 71 (110)
T 2j5a_A 9 YYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQF 71 (110)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEE
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEE
Confidence 45677777776 89999999999999998876532 2344455667776664
No 86
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=32.80 E-value=57 Score=24.60 Aligned_cols=52 Identities=6% Similarity=0.054 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcCCHH----HHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGSSKR----QINALAVSI 55 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~S~r----h~~aia~~v 55 (112)
++++++.|++.+.+.. -++.++|+.+.. .-+|.+||+|..-.- ++++..+.+
T Consensus 270 T~~la~~i~~~l~~~g-~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l 333 (414)
T 2q9u_A 270 THRMALALLDGARSTG-CETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYV 333 (414)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHHHH
Confidence 6789999999998754 478999998753 146999999875443 344444443
No 87
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=32.62 E-value=41 Score=22.56 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcC-----CCCeEEEecCC
Q psy8849 3 INKRQIIVIKILKDIK-----AQDIKVYDTSN 29 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kk-----a~dI~vldv~~ 29 (112)
+..+++.+++.+.+.. +-++.++|+.+
T Consensus 16 t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 16 CPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 6788899999998764 67899999874
No 88
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=32.40 E-value=1.1e+02 Score=20.16 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcC--CCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 4 NKRQIIVIKILKDIK--AQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 4 ~~l~~~i~~~l~~kk--a~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
++++..+++.|.+.- ..++ +.-+.+ ..|+|+..+.+...+..+++.+.+.+....
T Consensus 85 d~~L~~ia~~L~~~~~~~~~~-~~R~~~----d~F~il~~~~~~~~~~~~~~~i~~~~~~~~ 141 (206)
T 3i5c_A 85 DEALRQVAGAIREGCSRSSDL-AARYGG----EEFAMVLPGTSPGGARLLAEKVRRTVESLQ 141 (206)
T ss_dssp HHHHHHHHHHHHTTCCSTTCE-EEEEET----TEEEEEEETCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCcE-EEEecC----CeEEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence 467888999998743 3343 333332 356777888888999999999998887643
No 89
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=32.36 E-value=23 Score=27.15 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=28.6
Q ss_pred CEEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEEEc
Q psy8849 35 DRITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLLDL 82 (112)
Q Consensus 35 dy~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~WvllD~ 82 (112)
...||+=|.|..|=-++ |..|.+.|.+.+..+..+.=.+++.|.+.|.
T Consensus 12 ~v~vl~GG~S~E~~vS~~sa~~v~~~l~~~~~~v~~i~i~~~g~w~~~~~ 61 (373)
T 3lwb_A 12 RVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDA 61 (373)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECC
T ss_pred EEEEEecCCCCChhhHHHHHHHHHHHhhhcCceEEEEEecCCCCeEecCc
Confidence 57899999999995544 6677788876665543333235678998765
No 90
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=32.12 E-value=1.2e+02 Score=20.77 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCc
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNI 66 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~ 66 (112)
++.++.|...+..-|+..|+++--..+++- =.|+.....+...+.+.|+..|.+.
T Consensus 58 ~~av~eI~~~a~kv~~~~ivlYPyAHLSs~--------La~P~~A~~iL~~le~~L~~~g~eV 112 (143)
T 2hl0_A 58 LKAIEEISKVAEQVKAENVFVYPFAHLSSE--------LAKPSVAMDILNRVYQGLKERGFNV 112 (143)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECGGGCSS--------BCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCc--------cCChHHHHHHHHHHHHHHHhCCCeE
Confidence 456788899999999999999998887652 2467778889999999999988753
No 91
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=32.08 E-value=12 Score=26.14 Aligned_cols=40 Identities=5% Similarity=0.111 Sum_probs=23.6
Q ss_pred EEEecCCCCC------ccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 23 KVYDTSNLTN------LFDRITIASGSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 23 ~vldv~~~~~------~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.-+|.++... --|.+||+||.+.+++ ..++.+.|++.|+.
T Consensus 72 ~~~~~~~~~~~~~p~~~pEvliiGTG~~~~~l---~p~~~~~L~~~GIg 117 (150)
T 3cpk_A 72 AFLDEPEAGAGARPANAPEVLLVGTGRRQHLL---GPEQVRPLLAMGVG 117 (150)
T ss_dssp ----------------CCSEEEEECTTSCCCC---CHHHHHHHHTTTCE
T ss_pred hhccccccccccccCCCCCEEEEcCCCCCCCC---CHHHHHHHHHcCCE
Confidence 3446665433 4699999999998754 45677888888763
No 92
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=31.93 E-value=11 Score=25.32 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=22.8
Q ss_pred cCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 34 FDRITIASGSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 34 ~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.|.+||+||...+.+ ..++.+.|++.|+.
T Consensus 65 pevliiGTG~~~~~l---~p~~~~~l~~~GI~ 93 (132)
T 2gm2_A 65 PAVILLGTGERQQFP---STDVLAACLTRGIG 93 (132)
T ss_dssp CSEEEEECTTSCCCC---CHHHHHHHHHHTCE
T ss_pred CCEEEECCCCCCCcC---CHHHHHHHHHcCCE
Confidence 599999999998843 45677888888763
No 93
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=31.17 E-value=51 Score=19.18 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.1
Q ss_pred EcC-CHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 41 SGS-SKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 41 T~~-S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
.|+ |..|-+++++.|.+.+.+ .|+++
T Consensus 9 ~Grls~eqk~~L~~~l~~~l~~~lgip~ 36 (76)
T 1gyx_A 9 PRELDEQQKAALAADITDVIIRHLNSKD 36 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcCC
Confidence 488 999999999999999987 57654
No 94
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=30.72 E-value=11 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.9
Q ss_pred cCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 34 FDRITIASGSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 34 ~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.|.+||+||...++ +..++.+.|++.|+.
T Consensus 69 pevliiGtG~~~~~---l~p~~~~~l~~~GI~ 97 (128)
T 2fi9_A 69 IEVLLIGTGVELLR---LPEELRVLLWEKRIS 97 (128)
T ss_dssp CSEEEEECTTSCCC---CCHHHHHHHHHTTCE
T ss_pred CCEEEECCCCCCCC---CCHHHHHHHHHcCCE
Confidence 59999999999554 445778888888874
No 95
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=30.41 E-value=18 Score=26.00 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=14.6
Q ss_pred CEEEEEEcCCHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAV 53 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~ 53 (112)
-.|+|||||+...++.+.+
T Consensus 39 i~vviaTGR~~~~~~~~~~ 57 (282)
T 1rkq_A 39 VNVVLTTGRPYAGVHNYLK 57 (282)
T ss_dssp CEEEEECSSCGGGTHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHH
Confidence 5799999999877665543
No 96
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=30.32 E-value=70 Score=21.66 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcC-CCCeEEEecC
Q psy8849 3 INKRQIIVIKILKDIK-AQDIKVYDTS 28 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kk-a~dI~vldv~ 28 (112)
+..+++.+++.+.+.+ ..+|.++|+.
T Consensus 19 t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 19 SVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 5678889999998875 4689999998
No 97
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1
Probab=29.75 E-value=70 Score=20.21 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEecCCCC-------Cc---cCEEEEEEcCCHHHHHHHHH
Q psy8849 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLT-------NL---FDRITIASGSSKRQINALAV 53 (112)
Q Consensus 1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~~-------~~---~dy~VIaT~~S~rh~~aia~ 53 (112)
|...+..+.+.++|++.+.--+...+-.+.. .+ .+.+.+.|++.+++.+.|..
T Consensus 2 m~~~~~~~~~~~~l~~~~~~~LaT~~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~ 64 (146)
T 2hq7_A 2 MIDEKFLIESNELVESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKK 64 (146)
T ss_dssp -CCSHHHHHHHHHHHHCSEEEEEEECGGGCEEEEEEEEEEEETTTEEEEEEECCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCEEEEEEECCCCCEEEEEEEEEEEcCCCEEEEEecCCCHHHHHHhh
Confidence 5556677888889988765444444432210 11 15788999999999886654
No 98
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=29.29 E-value=1.2e+02 Score=19.65 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCC--CCeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHH
Q psy8849 4 NKRQIIVIKILKDIKA--QDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIR 56 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka--~dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~ 56 (112)
.++.+.|.++++..-. -++ -...+....|.-+-|-.++.|..|+.++-++|.
T Consensus 47 ~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~ 100 (109)
T 1rwu_A 47 PELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHIEQVETLYEELG 100 (109)
T ss_dssp TTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHh
Confidence 3567778888866532 344 446677778889999999999999998877663
No 99
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=29.04 E-value=60 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCc
Q psy8849 37 ITIASGSSKRQINALAVSIRKNIKNINNNI 66 (112)
Q Consensus 37 ~VIaT~~S~rh~~aia~~v~~~lk~~~~~~ 66 (112)
+|+|.|. ..+|..|++..++.|++.
T Consensus 19 ~VvAKG~-----~~~A~~I~e~A~e~gVPi 43 (93)
T 2vt1_B 19 FISLIET-----NQCALAVRKYANEVGIPT 43 (93)
T ss_dssp EEEEEEE-----HHHHHHHHHHHHHTTCCE
T ss_pred EEEEEeC-----cHHHHHHHHHHHHcCCCE
Confidence 7889997 678999999999999874
No 100
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=28.67 E-value=80 Score=18.04 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.6
Q ss_pred EEcCCHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 40 ASGSSKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 40 aT~~S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
..|+|..|-+++++.|-+.+.+ .|.++
T Consensus 9 ~~grs~eqK~~L~~~it~~l~~~lg~p~ 36 (72)
T 3mb2_A 9 LEGRSTEQKAELARALSAAAAAAFDVPL 36 (72)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3589999999999999999876 57764
No 101
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=28.38 E-value=36 Score=23.83 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=14.2
Q ss_pred EEEEEEcCCHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAV 53 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~ 53 (112)
.|+|||||+...++.+..
T Consensus 40 ~v~iaTGR~~~~~~~~~~ 57 (239)
T 1u02_A 40 DTYIVTGRSPEEISRFLP 57 (239)
T ss_dssp EEEEECSSCHHHHHHHSC
T ss_pred CEEEEeCCCHHHHHHHhc
Confidence 799999999887765543
No 102
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=28.20 E-value=81 Score=22.73 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--Cc--cCEEEEEEcCC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--NL--FDRITIASGSS 44 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--~~--~dy~VIaT~~S 44 (112)
++++++.|++.+. .+-++.++++.+.. .+ .+.+|++|.+-
T Consensus 54 te~~A~~La~~l~--~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTy 97 (219)
T 3hr4_A 54 SEALAWDLGALFS--CAFNPKVVCMDKYRLSCLEEERLLLVVTSTF 97 (219)
T ss_dssp HHHHHHHHHHHHT--TTSEEEEEEGGGCCGGGGGTCSEEEEEEECB
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEcccCCHhHhccCCeEEEEEecc
Confidence 6788888888773 56688898887642 22 35666666543
No 103
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.13 E-value=74 Score=23.79 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--------------------CccCEEEEEEcCCH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--------------------NLFDRITIASGSSK 45 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--------------------~~~dy~VIaT~~S~ 45 (112)
+..+++.+++.+.+. +-++.++|+.+.. ..+|.+||+|..=.
T Consensus 74 T~~La~~~~~~l~~~-G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 74 SRLAVEEAARLLQFF-GAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH 135 (279)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc
Confidence 567888899988764 5589999998753 13588888886543
No 104
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=27.94 E-value=76 Score=21.72 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC-----------------------------CccCEEEEEEc----CCHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT-----------------------------NLFDRITIASG----SSKRQIN 49 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~-----------------------------~~~dy~VIaT~----~S~rh~~ 49 (112)
+..+++.+++.+ ..+.+|.++|+.+.. ..+|.+||+|. .-+.+++
T Consensus 16 t~~l~~~~~~~~--~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK 93 (196)
T 3lcm_A 16 NAEILKQVQTNL--SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILK 93 (196)
T ss_dssp HHHHHHHHHHHS--CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHH
T ss_pred HHHHHHHHHHHh--cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHH
Confidence 456778888877 567889999998642 12688888875 4455555
Q ss_pred HHHHHH
Q psy8849 50 ALAVSI 55 (112)
Q Consensus 50 aia~~v 55 (112)
+..|.+
T Consensus 94 ~~iD~v 99 (196)
T 3lcm_A 94 GFIDRV 99 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 105
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*
Probab=27.40 E-value=41 Score=23.78 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.3
Q ss_pred CEEEEEEcCCHHHH
Q psy8849 35 DRITIASGSSKRQI 48 (112)
Q Consensus 35 dy~VIaT~~S~rh~ 48 (112)
=.|+|||||+...+
T Consensus 46 i~v~iaTGR~~~~~ 59 (262)
T 2fue_A 46 VQIGVVGGSDYCKI 59 (262)
T ss_dssp SEEEEECSSCHHHH
T ss_pred CEEEEEcCCCHHHH
Confidence 57999999987654
No 106
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=27.29 E-value=42 Score=23.49 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=14.9
Q ss_pred CEEEEEEcCCHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAV 53 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~ 53 (112)
-.++||||++...++.+..
T Consensus 39 ~~~~iaTGR~~~~~~~~~~ 57 (279)
T 4dw8_A 39 IRLVLASGRPTYGIVPLAN 57 (279)
T ss_dssp CEEEEECSSCHHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHH
Confidence 4799999999887765544
No 107
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.98 E-value=2e+02 Score=21.55 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcCCHHHHHHHHH
Q psy8849 7 QIIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGSSKRQINALAV 53 (112)
Q Consensus 7 ~~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~S~rh~~aia~ 53 (112)
+..+.+.+.+.+.-|++++|.+... ..+|++|+.+-.+..-+.++.+
T Consensus 247 ~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l~~aD~vivv~~~~~~s~~~l~~ 301 (373)
T 3fkq_A 247 IDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSKAWRIIVVNDGSQLSNYKFMR 301 (373)
T ss_dssp HHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHHTTCSEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHCCEEEEEecCCchHHHHHHH
Confidence 4455666666667899999998542 4579999999888866555554
No 108
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=26.97 E-value=29 Score=24.72 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=15.0
Q ss_pred cCEEEEEEcCCHHHHHHHHH
Q psy8849 34 FDRITIASGSSKRQINALAV 53 (112)
Q Consensus 34 ~dy~VIaT~~S~rh~~aia~ 53 (112)
.-.|+||||++...++.+.+
T Consensus 54 G~~v~iaTGR~~~~~~~~~~ 73 (285)
T 3pgv_A 54 GINFVFATGRHYIDVGQIRD 73 (285)
T ss_dssp TCEEEEECSSCGGGGHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHH
Confidence 35799999999887665543
No 109
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=26.83 E-value=12 Score=27.47 Aligned_cols=64 Identities=9% Similarity=0.190 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEecCCCCC------ccC-EEEEEE---cCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 2 NINKRQIIVIKILKDIKAQDIKVYDTSNLTN------LFD-RITIAS---GSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 2 ~~~~l~~~i~~~l~~kka~dI~vldv~~~~~------~~d-y~VIaT---~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
++++.++.+++-+++.+..+|+|--.++.+. +++ -+|++| |.+.+....+..+.++.|++.|.+
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~ 100 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAK 100 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCE
Confidence 4778889999999999888888877776542 111 244444 555555555666777777777664
No 110
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=26.53 E-value=57 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCc
Q psy8849 37 ITIASGSSKRQINALAVSIRKNIKNINNNI 66 (112)
Q Consensus 37 ~VIaT~~S~rh~~aia~~v~~~lk~~~~~~ 66 (112)
+|+|.|. ..+|..|++..++.|++.
T Consensus 19 ~VvAKG~-----~~~A~~I~~~A~e~~VPi 43 (83)
T 3bzy_B 19 LVIETGK-----DAKALQIIKLAELYDIPV 43 (83)
T ss_dssp EEEEEEE-----THHHHHHHHHHHHTTCCE
T ss_pred EEEEEeC-----cHHHHHHHHHHHHcCCCE
Confidence 6889997 567889999999999864
No 111
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=26.39 E-value=45 Score=21.67 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCC---CCeE--EEecCCC---CCccC-EEEEEE-----cCCHHHHHHHHHHHHHHHHhc
Q psy8849 3 INKRQIIVIKILKDIKA---QDIK--VYDTSNL---TNLFD-RITIAS-----GSSKRQINALAVSIRKNIKNI 62 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka---~dI~--vldv~~~---~~~~d-y~VIaT-----~~S~rh~~aia~~v~~~lk~~ 62 (112)
...|++.+-.++.+... .+|. .+-.... ..-.| -|+..+ |+|..|-+++++.|-+.+++.
T Consensus 17 ~~~L~~~lh~~l~~~~~fp~~~ik~Ra~~~~~~~vg~~~~~~~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~ 90 (125)
T 1otg_A 17 LPGLFAKVNPTLAATGIFPLAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTH 90 (125)
T ss_dssp HHHHHHHHHHHHHTTSSSCGGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcCceEeeEEcccEEEcCCCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 34677777777766653 3332 2222110 11123 455554 999999999999999999874
No 112
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=26.31 E-value=1.6e+02 Score=20.16 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCeEEEecCCC-CCccCEEEEEEcCCHHHHHHHHHHHHHHHH
Q psy8849 8 IIVIKILKDIKAQDIKVYDTSNL-TNLFDRITIASGSSKRQINALAVSIRKNIK 60 (112)
Q Consensus 8 ~~i~~~l~~kka~dI~vldv~~~-~~~~dy~VIaT~~S~rh~~aia~~v~~~lk 60 (112)
..++..|.+. +.+|.++|-+.. ..-+|++++|+. ..+++++.+.+...++
T Consensus 32 ~~la~~l~~~-g~~V~~~~~~~~~~~~aD~vi~av~--~~~~~~v~~~l~~~~~ 82 (209)
T 2raf_A 32 QAIGHNFEIA-GHEVTYYGSKDQATTLGEIVIMAVP--YPALAALAKQYATQLK 82 (209)
T ss_dssp HHHHHHHHHT-TCEEEEECTTCCCSSCCSEEEECSC--HHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHC-CCEEEEEcCCHHHhccCCEEEEcCC--cHHHHHHHHHHHHhcC
Confidence 3456666654 468999987653 335799998887 6777777777766554
No 113
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=26.10 E-value=86 Score=19.62 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=34.5
Q ss_pred CEEEEEEcC-CHHHHHHHHHHHHHHHHhcCCCccc------------ccccCCCCEEEEEc
Q psy8849 35 DRITIASGS-SKRQINALAVSIRKNIKNINNNIVN------------IEGKKSSEWLLLDL 82 (112)
Q Consensus 35 dy~VIaT~~-S~rh~~aia~~v~~~lk~~~~~~~~------------~EG~~~~~WvllD~ 82 (112)
+.++|.... +..++.++.+.+...+.+.|....+ +.....|..+++++
T Consensus 5 E~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f 65 (101)
T 1cqm_A 5 EVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQV 65 (101)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEE
Confidence 456777776 8999999999999999987764332 33345566766665
No 114
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=26.10 E-value=45 Score=23.31 Aligned_cols=18 Identities=6% Similarity=0.246 Sum_probs=13.9
Q ss_pred CEEEEEEcCCHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALA 52 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia 52 (112)
-.+++|||++...++.+.
T Consensus 39 ~~~~iaTGR~~~~~~~~~ 56 (279)
T 3mpo_A 39 IKVVLCTGRPLTGVQPYL 56 (279)
T ss_dssp CEEEEECSSCHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHH
Confidence 479999999987765544
No 115
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=26.07 E-value=1.1e+02 Score=21.88 Aligned_cols=54 Identities=7% Similarity=0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC---------CCccCEEEEEEc----CCHHHHHHHHHHHHH
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL---------TNLFDRITIASG----SSKRQINALAVSIRK 57 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~---------~~~~dy~VIaT~----~S~rh~~aia~~v~~ 57 (112)
+..+++.+++.+.+ .+-+|.++|+.+. -..+|.+|+++. .-+.++++..|.+-.
T Consensus 45 n~~L~~~~~~~l~~-~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~ 111 (218)
T 3rpe_A 45 NLTLTNVAADFLRE-SGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVFT 111 (218)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHHHHHHh
Confidence 35678888888877 5678999999852 246799999985 556666666665543
No 116
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=26.06 E-value=90 Score=17.26 Aligned_cols=39 Identities=3% Similarity=-0.103 Sum_probs=27.7
Q ss_pred EcCCHHHHHHHHHHHHHHHHh-cCCCcc----cccccCCCCEEE
Q psy8849 41 SGSSKRQINALAVSIRKNIKN-INNNIV----NIEGKKSSEWLL 79 (112)
Q Consensus 41 T~~S~rh~~aia~~v~~~lk~-~~~~~~----~~EG~~~~~Wvl 79 (112)
.|+|..|-+++++.|-+.+.+ .|.++- .+.-.+.++|-.
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~ 51 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGV 51 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEE
Confidence 689999999999999999876 576532 223334456654
No 117
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=26.05 E-value=58 Score=22.10 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCC---CCeEEEecCCCC------CccCEEEE-----EEcCCHHHHHHHHHHHHHHHHhc
Q psy8849 3 INKRQIIVIKILKDIKA---QDIKVYDTSNLT------NLFDRITI-----ASGSSKRQINALAVSIRKNIKNI 62 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka---~dI~vldv~~~~------~~~dy~VI-----aT~~S~rh~~aia~~v~~~lk~~ 62 (112)
...+++.|-.+|-+... .||.+-=.+-.. .-.+.||- ..|+|..|-+++++.|-+.+++.
T Consensus 39 ~~~l~~~vh~al~~~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~ 112 (146)
T 3e6q_A 39 PGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQALGESLCEVLAGA 112 (146)
T ss_dssp HHHHHHHHHHHHHHTTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 45688888888876433 455443222111 11245664 45999999999999999999875
No 118
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=25.95 E-value=88 Score=22.15 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.0
Q ss_pred EEEEEc-CCHHHHHHHHHHHHHHHHhcC
Q psy8849 37 ITIASG-SSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 37 ~VIaT~-~S~rh~~aia~~v~~~lk~~~ 63 (112)
-|++|| +|..+++...+.+...|++.+
T Consensus 159 KiviTGaks~~~~~~A~~~i~~~L~~~~ 186 (188)
T 2z8u_A 159 KVVITGLKSEEDAKRALKKILDTIKEVQ 186 (188)
T ss_dssp EEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 355666 588899999999988888765
No 119
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=25.89 E-value=1.2e+02 Score=21.23 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcCCHHHHHHHHH
Q psy8849 9 IVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGSSKRQINALAV 53 (112)
Q Consensus 9 ~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~S~rh~~aia~ 53 (112)
.+.++|+. ..-|++++|.+... ..+|++|+.+..+..-++++..
T Consensus 102 ~l~~~l~~-~~yD~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 102 ALREALRD-EGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp HHHHHCCC-TTCSEEEEECCSSCCHHHHHHHHHCSEEEEEEESSTHHHHHHHH
T ss_pred HHHHHhcc-cCCCEEEEeCCCCCCHHHHHHHHHCCeEEEEecCchHHHHHHHH
Confidence 45555655 66799999999753 2469999998877665555443
No 120
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=25.76 E-value=56 Score=24.16 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=36.9
Q ss_pred cCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCc-ccccc----cCCCCEEEEEc--CCEEEEeeChhhhhhc
Q psy8849 34 FDRITIASGSSKRQINALAVSIRKNIKNINNNI-VNIEG----KKSSEWLLLDL--GDIIIHIMNPYIRNMY 98 (112)
Q Consensus 34 ~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~-~~~EG----~~~~~WvllD~--g~vvVHif~~e~R~~Y 98 (112)
.--||...|..+.|..-+|.++ |+|. .+..+ ..+++++.+|. |.|++. -+++.++.|
T Consensus 176 ~~givt~~Gg~tSH~AIlAR~l-------gIPavvg~~~~~~~~~~G~~v~vDg~~G~v~~~-p~~~~~~~y 239 (258)
T 1zym_A 176 VLGFITDAGGRTSHTSIMARSL-------ELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVN-PTNEVIDKM 239 (258)
T ss_dssp EEEEECSCCCSSSHHHHHHHHH-------TCCEECCCSCHHHHCCTTCEEEECCSSCCEEES-CCHHHHHHH
T ss_pred cEEEEEcCCCcccHHHHHHHHc-------CCCEEEechhHHHhCCCCCEEEEECCCCeEEEC-cCHHHHHHH
Confidence 3467777899999988777644 6652 22222 46799999998 455444 345555555
No 121
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}
Probab=25.72 E-value=76 Score=19.81 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEecCCC------C--Cc---cCEEEEEEcCCHHHHHHHH
Q psy8849 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNL------T--NL---FDRITIASGSSKRQINALA 52 (112)
Q Consensus 1 m~~~~l~~~i~~~l~~kka~dI~vldv~~~------~--~~---~dy~VIaT~~S~rh~~aia 52 (112)
|+..+..+++.++|.+.+.--+...|-.+. . .. ...+.+.|+..++.++.|.
T Consensus 2 m~~~~~~~~~~~~l~~~~~~~LaT~~~dG~P~~~pv~~~~~~~~~~~l~f~t~~~s~K~~~l~ 64 (134)
T 2re7_A 2 MSNQKHIDKIQAVIKDVKFAMISTSNKKGDIHAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQ 64 (134)
T ss_dssp -CCCCCHHHHHHHHHHCSCEEEEEECTTSCEEEEEECCSEEETTTTEEEEEEETTSHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEEcCCCCEEEEecEeeeecCCCceEEEEECCCCHHHHHHh
Confidence 555566778888888877666666553332 1 12 3578999999888776443
No 122
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=25.64 E-value=65 Score=23.29 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcccccccCCCCEEEEEcCCEEEEeeChh
Q psy8849 46 RQINALAVSIRKNIKNI---NNNIVNIEGKKSSEWLLLDLGDIIIHIMNPY 93 (112)
Q Consensus 46 rh~~aia~~v~~~lk~~---~~~~~~~EG~~~~~WvllD~g~vvVHif~~e 93 (112)
.|-+.+-+.+...|++. |+-.....|.+. ..-|||||+|=
T Consensus 121 ~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~--------~~~vlhiFPPC 163 (195)
T 1ow1_A 121 SQTESLKAAFITYLQAKQAAGIINVPNPGSNQ--------PAYVLQIFPPC 163 (195)
T ss_dssp HHHHHHHHHTHHHHHHHTEEEEEEECCTTCCS--------CCEEEEEECSS
T ss_pred hhhhHHHHHHHHHHHhCccceEEecCCCCCCC--------cceEEEEcCCc
Confidence 44555666667777653 543222233322 35789999985
No 123
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=25.38 E-value=60 Score=21.65 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~ 43 (112)
++++++.|++.|... .+.++|+.+.. .-+|.+||++..
T Consensus 14 T~~iA~~Ia~~l~~~---~v~i~~~~~~~~~~l~~~d~ii~g~pt 55 (175)
T 1ag9_A 14 TENIAKMIQKQLGKD---VADVHDIAKSSKEDLEAYDILLLGIPT 55 (175)
T ss_dssp HHHHHHHHHHHHCTT---TEEEEEGGGCCHHHHHTCSEEEEECCE
T ss_pred HHHHHHHHHHHhccC---ceEEEEcccCChhHhhhCCEEEEEEee
Confidence 677888888887653 67788887632 125788888765
No 124
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=25.30 E-value=18 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=22.4
Q ss_pred cCEEEEEEcCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 34 FDRITIASGSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 34 ~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
.|.+||+||...+. .+..++.+.|++.|+.
T Consensus 62 ~evliiGtG~~~~~--~~~~~~~~~l~~~gI~ 91 (122)
T 2ab1_A 62 VQTLVIGRGMSEAL--KVPSSTVEYLKKHGID 91 (122)
T ss_dssp CSEEEEEECSSCCS--CCCHHHHHHHHHTTCE
T ss_pred CCEEEECCCCCCcc--CCCHHHHHHHHHcCCE
Confidence 69999999998873 2345567788888764
No 125
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=25.21 E-value=1.7e+02 Score=20.17 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=30.4
Q ss_pred CCCeEEEecCCCC--------CccCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 19 AQDIKVYDTSNLT--------NLFDRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 19 a~dI~vldv~~~~--------~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
.-|++++|..... ..+|++|+.+..+..-+..+...+ +.+++.+
T Consensus 110 ~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~-~~l~~~~ 161 (263)
T 1hyq_A 110 STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTK-IVAERLG 161 (263)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHHHHHHHHHHH-HHHHHHT
T ss_pred hCCEEEEeCCCCCChHHHHHHHHCCEEEEEeCCChhHHHHHHHHH-HHHHhcC
Confidence 4699999998642 357999999988877666655533 3444433
No 126
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=25.18 E-value=73 Score=20.35 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHHHhcCCCc
Q psy8849 37 ITIASGSSKRQINALAVSIRKNIKNINNNI 66 (112)
Q Consensus 37 ~VIaT~~S~rh~~aia~~v~~~lk~~~~~~ 66 (112)
+|+|.|. ..+|..|++..++.|++.
T Consensus 19 ~VvAKG~-----~~~A~~I~e~A~e~gVPi 43 (98)
T 3c01_E 19 MISVYET-----NQRALAVRAYAEKVGVPV 43 (98)
T ss_dssp EEEEEEE-----HHHHHHHHHHHHHHTCCE
T ss_pred EEEEEeC-----cHHHHHHHHHHHHcCCCe
Confidence 7889997 678999999999999874
No 127
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=25.05 E-value=1.2e+02 Score=19.17 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCCccCEEEEEEc-CCHHHHHHHHHHHHHHHHh
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASG-SSKRQINALAVSIRKNIKN 61 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~~~dy~VIaT~-~S~rh~~aia~~v~~~lk~ 61 (112)
+++++.+++.|...-..+-.+.-+.+ ..|+|+..+ .+......+++.+.+.+..
T Consensus 54 d~~L~~~a~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~~l~~~~~~ 108 (171)
T 3icl_A 54 DRLLRATAERIRTAVRDGDTVARIGG----DKFTILLNGAKDTLNGALVAQKILDGLAQ 108 (171)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEETT----TEEEEEESSCTTSTTTHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecC----CEEEEEecCCCChHHHHHHHHHHHHHhhC
Confidence 46788889988876554444555443 245556555 3455566777777777654
No 128
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=24.82 E-value=75 Score=20.25 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=21.9
Q ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHhcCCCc
Q psy8849 36 RITIASGSSKRQINALAVSIRKNIKNINNNI 66 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~~v~~~lk~~~~~~ 66 (112)
=+|+|.|. ..+|..|++..++.|++.
T Consensus 33 P~VvAKG~-----~~~A~~I~~~A~e~gVPi 58 (97)
T 3t7y_A 33 PWIIAMGV-----NLRAKRIIAEAEKYGVPI 58 (97)
T ss_dssp CEEEEEEE-----HHHHHHHHHHHHHHTCCE
T ss_pred CEEEEEeC-----cHHHHHHHHHHHHcCCeE
Confidence 37889997 678999999999999874
No 129
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=24.34 E-value=1.7e+02 Score=21.38 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=27.8
Q ss_pred CCeEEEecCCCC---------CccCEEEEEEcCCHHHHHHHHHHHHHHHHhcCC
Q psy8849 20 QDIKVYDTSNLT---------NLFDRITIASGSSKRQINALAVSIRKNIKNINN 64 (112)
Q Consensus 20 ~dI~vldv~~~~---------~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~~ 64 (112)
-|++++|.+... ..+|.+|+++..+......+...+ +.+++.+.
T Consensus 214 yD~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~-~~l~~~~~ 266 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSM-QRLEQAGV 266 (299)
T ss_dssp CSEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTSCTTHHHHHH-HHHHHTTC
T ss_pred CCEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCChHHHHHHHH-HHHHhCCC
Confidence 599999999852 457888888765554444444433 34454443
No 130
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=24.33 E-value=1.7e+02 Score=19.75 Aligned_cols=44 Identities=7% Similarity=-0.091 Sum_probs=31.4
Q ss_pred CCCeEEEecCCCC--------CccCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 19 AQDIKVYDTSNLT--------NLFDRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 19 a~dI~vldv~~~~--------~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
.-|++++|..... ..+|++|+.+..+..-++.+...+ +.+++.+
T Consensus 111 ~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~-~~l~~~~ 162 (237)
T 1g3q_A 111 KFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVG-IVLKKAG 162 (237)
T ss_dssp GCSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHHHHHHHHHHH-HHHHHTT
T ss_pred cCCEEEEECCCCcCHHHHHHHHHCCeEEEEecCCcccHHHHHHHH-HHHHhCC
Confidence 3699999998642 467999999988877777665544 4455443
No 131
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.17 E-value=1.7e+02 Score=19.78 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCC--------CccCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 8 IIVIKILKDIKAQDIKVYDTSNLT--------NLFDRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 8 ~~i~~~l~~kka~dI~vldv~~~~--------~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
+.+.+.+.+ .-|++++|.+... ..+|++|+.+-.+...++++...+ +.+++.+
T Consensus 109 ~~~l~~l~~--~yD~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~-~~l~~~~ 169 (245)
T 3ea0_A 109 SDLIHIAAS--FYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLL-KLCKEFE 169 (245)
T ss_dssp HHHHHHHHH--HCSEEEEEEESSCCTTHHHHGGGCSEEEEEECSSHHHHHHHHHHH-HHHHTCS
T ss_pred HHHHHHHHh--hCCEEEEeCCCCCchHHHHHHHHCCEEEEEecCcHHHHHHHHHHH-HHHHHhC
Confidence 344444433 4799999998642 457999999999988888776654 4555544
No 132
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=24.03 E-value=48 Score=24.53 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=30.7
Q ss_pred EEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEEE
Q psy8849 36 RITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLLD 81 (112)
Q Consensus 36 y~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~WvllD 81 (112)
..||+-|.|..|=-++ +..+.+.|++.|.....+.-.+++.|+..|
T Consensus 6 v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~ 53 (343)
T 1e4e_A 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCE 53 (343)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEES
T ss_pred EEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecc
Confidence 5788899998775554 556788888888765444333445687644
No 133
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=23.91 E-value=31 Score=24.62 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=14.1
Q ss_pred CEEEEEEcCCHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALA 52 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia 52 (112)
-.|+||||++...++.+.
T Consensus 56 ~~v~iaTGR~~~~~~~~~ 73 (283)
T 3dao_A 56 IIFVVCSGRQFSSEFKLF 73 (283)
T ss_dssp CEEEEECSSCHHHHHHHT
T ss_pred CEEEEEcCCCHHHHHHHH
Confidence 468999999988776543
No 134
>2hd3_A Ethanolamine utilization protein EUTN; beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Escherichia coli} SCOP: b.40.15.1 PDB: 2z9h_A
Probab=23.88 E-value=70 Score=20.75 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCccCEEEEEEcCCHHHH
Q psy8849 19 AQDIKVYDTSNLTNLFDRITIASGSSKRQI 48 (112)
Q Consensus 19 a~dI~vldv~~~~~~~dy~VIaT~~S~rh~ 48 (112)
++-++++|.=+ ....|++++++|+|.|+.
T Consensus 38 g~~~VAvD~VG-AG~Ge~Vlv~~GSaAR~~ 66 (103)
T 2hd3_A 38 GQCAVAIDNIG-AGTGEWVLLVSGSSARQA 66 (103)
T ss_dssp EEEEEEEESSC-CCTTCEEEEEETHHHHHH
T ss_pred CCEEEEEECCC-CCCCCEEEEeCCHHHHhh
Confidence 35577777665 567899999999877754
No 135
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=23.79 E-value=29 Score=24.35 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=13.3
Q ss_pred CEEEEEEcCCHHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAVS 54 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~ 54 (112)
-.+++||++|.|....+...
T Consensus 38 ~~vvl~Tn~~gr~~~~~~~~ 57 (264)
T 3epr_A 38 IPYMLVTNNTTRTPESVQEM 57 (264)
T ss_dssp CCEEEEECCCSSCHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHH
Confidence 35799997776666555443
No 136
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=23.69 E-value=43 Score=23.56 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=14.7
Q ss_pred CEEEEEEcCCHHHHHHHHH
Q psy8849 35 DRITIASGSSKRQINALAV 53 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~ 53 (112)
-.++||||++...++.+.+
T Consensus 40 ~~~~iaTGR~~~~~~~~~~ 58 (290)
T 3dnp_A 40 IYVTLVTNRHFRSAQKIAK 58 (290)
T ss_dssp CEEEEBCSSCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHH
Confidence 5689999999888765544
No 137
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=23.60 E-value=1.5e+02 Score=18.90 Aligned_cols=55 Identities=7% Similarity=-0.100 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCCCC--CccCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Q psy8849 6 RQIIVIKILKDIKAQDIKVYDTSNLT--NLFDRITIASGSSKRQINALAVSIRKNIKNI 62 (112)
Q Consensus 6 l~~~i~~~l~~kka~dI~vldv~~~~--~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~ 62 (112)
.++-+.+-|..+ -+|.|-.+.... ..+..-|.+-|+|..|+..+.+.+.+.+...
T Consensus 25 vvksl~~rlr~r--FnVSvAEv~~qD~~q~a~igva~Vs~~~~~~~~~l~~v~~~ie~~ 81 (102)
T 1j27_A 25 LIKPALERLKAR--FPVSAARLYGLDAWGYEVVGFTLLGNDPAWVEETMRAAARFLAEA 81 (102)
T ss_dssp HHHHHHHHHHHH--SSCEEEEEECTTCSSEEEEEEEEEESCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhc--CCeEEEEecCccccceEEEEEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 344444444444 377777777654 4556777888999999999999999887654
No 138
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A
Probab=23.11 E-value=52 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.4
Q ss_pred CEEEEEEcCCHHH
Q psy8849 35 DRITIASGSSKRQ 47 (112)
Q Consensus 35 dy~VIaT~~S~rh 47 (112)
=.|+|||||+...
T Consensus 39 i~v~iaTGR~~~~ 51 (246)
T 2amy_A 39 IKIGVVGGSDFEK 51 (246)
T ss_dssp SEEEEECSSCHHH
T ss_pred CeEEEEcCCCHHH
Confidence 4799999998643
No 139
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=23.10 E-value=51 Score=24.50 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=32.2
Q ss_pred CEEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEE
Q psy8849 35 DRITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLL 80 (112)
Q Consensus 35 dy~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~Wvll 80 (112)
...|++=|.|.-|=-++ |..|.+.|++.|..+.-+.-.+++.|.+.
T Consensus 5 ~v~vl~GG~s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~ 52 (346)
T 3se7_A 5 KIGIIFGGVSEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLC 52 (346)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEE
T ss_pred EEEEEeeecCCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEec
Confidence 35789999999886554 66788888887776544443455678654
No 140
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=23.10 E-value=49 Score=25.36 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=32.7
Q ss_pred CEEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEEE
Q psy8849 35 DRITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLLD 81 (112)
Q Consensus 35 dy~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~WvllD 81 (112)
...|++=|.|.-|==++ |..|.+.|++.|..+..+.=.+++.|.+.+
T Consensus 6 ~v~vl~GG~S~E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~ 54 (372)
T 3tqt_A 6 HISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLID 54 (372)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEC
T ss_pred EEEEEeccCCCccHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEecc
Confidence 35789999999996554 667888887777654433323567898754
No 141
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=22.86 E-value=54 Score=25.14 Aligned_cols=48 Identities=23% Similarity=0.156 Sum_probs=34.9
Q ss_pred CEEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEEEc
Q psy8849 35 DRITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLLDL 82 (112)
Q Consensus 35 dy~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~WvllD~ 82 (112)
...|++=|.|.-|=-++ |..|.+.|++.|..+.-+.-.+++.|.+.+.
T Consensus 24 ~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~ 73 (386)
T 3e5n_A 24 RVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDP 73 (386)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECG
T ss_pred eEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEeccc
Confidence 46799999999986554 6678888888777654444345678998654
No 142
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=22.76 E-value=1.4e+02 Score=19.43 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC----CccCEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT----NLFDRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~----~~~dy~VIaT~~ 43 (112)
++++++.|++.| + . +.++++.+.. .-.|.+||++..
T Consensus 15 T~~~A~~ia~~l---g-~-~~~~~~~~~~~~~l~~~d~ii~g~pt 54 (164)
T 2bmv_A 15 AEAIAEKISKAI---G-N-AEVVDVAKASKEQFNSFTKVILVAPT 54 (164)
T ss_dssp HHHHHHHHHHHH---C-S-EEEEEGGGCCHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHc---C-C-cEEEecccCCHhHHhhCCEEEEEECC
Confidence 667788888877 2 3 7788887532 125788888765
No 143
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein tyrosine phosphatase, inositol phosphate, I phosphatase; HET: IHP; 1.60A {Selenomonas ruminantium} SCOP: c.45.1.4 PDB: 1u24_A 1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A 3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Probab=22.41 E-value=2.6e+02 Score=21.33 Aligned_cols=81 Identities=12% Similarity=-0.083 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCC-c-cCEEEEE--------EcCCHHHHHHHHHHHHHHHHhcCCCccccc-cc
Q psy8849 4 NKRQIIVIKILKDIKAQDIKVYDTSNLTN-L-FDRITIA--------SGSSKRQINALAVSIRKNIKNINNNIVNIE-GK 72 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~dI~vldv~~~~~-~-~dy~VIa--------T~~S~rh~~aia~~v~~~lk~~~~~~~~~E-G~ 72 (112)
.+=++.|.+.|.+.+...|+++||++.+- + -+..|.- +|.|..++...-..+...++..+......+ +.
T Consensus 78 ~~gl~~il~~L~~~~~~~vvwVdLREEshg~inG~~vS~~~~~n~~N~G~s~~~v~~~E~~~l~~l~~~~~~~~~~~~~~ 157 (314)
T 3mmj_A 78 PAQLKNVAAKLREKTAGPIYDVDLRQESHGYLDGIPVSWYGERDWANLGKSQHEALADERHRLHAALHKTVYIAPLGKHK 157 (314)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEEEEECSCEEEETTEEEEEEEGGGCTTTTCCHHHHHHHHHHHHHHHTTSEEEEECBCGGG
T ss_pred HHHHHHHHHHHhccCCCcEEEEEcCccceEEECCceeecccCCCccCCCCCHHHHHHHHHHHHHHHhcCCcEEEecCccc
Confidence 44456778888888889999999999862 1 1333332 677877777665545555543222111111 11
Q ss_pred CCCCEEEEEcCC
Q psy8849 73 KSSEWLLLDLGD 84 (112)
Q Consensus 73 ~~~~WvllD~g~ 84 (112)
....|..++..+
T Consensus 158 ~~~~p~~~~~~~ 169 (314)
T 3mmj_A 158 LPEGGEVRRVQK 169 (314)
T ss_dssp CBBSCEEEECCC
T ss_pred CCCCCeeechhc
Confidence 223567777765
No 144
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=22.35 E-value=1.5e+02 Score=22.41 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCC----CeEEEecCCCCCccCEEEEEEcCCHHHHHHHHHHHHHHHHh
Q psy8849 4 NKRQIIVIKILKDIKAQ----DIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKN 61 (112)
Q Consensus 4 ~~l~~~i~~~l~~kka~----dI~vldv~~~~~~~dy~VIaT~~S~rh~~aia~~v~~~lk~ 61 (112)
+++++.+++.|...-.. +-.+.-+.+ .+|.|+..+.+...+..+++.+.+.+.+
T Consensus 72 D~lL~~va~~L~~~~~~~~~~~~~v~R~gg----deF~ill~~~~~~~~~~~~~~l~~~l~~ 129 (430)
T 3pjx_A 72 DELLKAVGEQLSRECAKYPETQNLVTRIRG----GEFAVLAPGMTREEALQLAQSLDSALSS 129 (430)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGTTCEEEEET----TEEEEEEETCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcCceEEEecC----ceEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 46777788777653221 223333333 3677888888999999999999888875
No 145
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=22.22 E-value=45 Score=21.01 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=33.0
Q ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHhcCCCcc------------cccccCCCCEEEEEc
Q psy8849 35 DRITIASGSSKRQINALAVSIRKNIKNINNNIV------------NIEGKKSSEWLLLDL 82 (112)
Q Consensus 35 dy~VIaT~~S~rh~~aia~~v~~~lk~~~~~~~------------~~EG~~~~~WvllD~ 82 (112)
+.++|.....+.++.++.+.+.+.+.+.|.... .+.....|.++++++
T Consensus 5 E~~~Il~p~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~l~~f 64 (100)
T 3r8n_F 5 EIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNV 64 (100)
T ss_dssp CCCCEECGGGTTHHHHHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCSCEEEEECCE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCCEEEEEEEEE
Confidence 445666555457999999999999988765432 344556677777765
No 146
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=22.09 E-value=1.8e+02 Score=19.42 Aligned_cols=63 Identities=10% Similarity=0.000 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhc---CCCCeEE--EecCCCCCc------cC--EEE---EEEcCCHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 4 NKRQIIVIKILKDI---KAQDIKV--YDTSNLTNL------FD--RIT---IASGSSKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 4 ~~l~~~i~~~l~~k---ka~dI~v--ldv~~~~~~------~d--y~V---IaT~~S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
+.|++.|.+++.+. ...+|.+ .+++...-+ +| -+| +.+|+|..|-++++..|.+.+.+ .|+++
T Consensus 18 ~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L~~~I~~~l~~~~g~~~ 97 (149)
T 3mf7_A 18 HAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQLAQRIVDDVSVAAEIDR 97 (149)
T ss_dssp HHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 45788888888775 3356654 366543322 13 222 24599999999999999999976 46654
No 147
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=21.77 E-value=1.2e+02 Score=19.23 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=33.4
Q ss_pred EEEecCCCCCccCEEEEEEcC-CHHHHHHHHHHHHHHHHhcCCCccccc
Q psy8849 23 KVYDTSNLTNLFDRITIASGS-SKRQINALAVSIRKNIKNINNNIVNIE 70 (112)
Q Consensus 23 ~vldv~~~~~~~dy~VIaT~~-S~rh~~aia~~v~~~lk~~~~~~~~~E 70 (112)
.++-+..-. ..+.++|.... |..++.++.+.+...+++.|......+
T Consensus 36 l~v~~e~Mr-~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve 83 (96)
T 2kjw_A 36 MVVASTTPG-RYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVE 83 (96)
T ss_dssp EEEECSSSS-CEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCE
T ss_pred hheehhhhh-hhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 455555323 34666666665 899999999999999999887654444
No 148
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=21.05 E-value=40 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=13.8
Q ss_pred EEEEEEcCCHHHHHHHHHH
Q psy8849 36 RITIASGSSKRQINALAVS 54 (112)
Q Consensus 36 y~VIaT~~S~rh~~aia~~ 54 (112)
.+++|||++...+..+...
T Consensus 38 ~~~~aTGR~~~~~~~~~~~ 56 (258)
T 2pq0_A 38 YVAIATGRAPFMFEHVRKQ 56 (258)
T ss_dssp EEEEECSSCGGGSHHHHHH
T ss_pred EEEEECCCChHHHHHHHHh
Confidence 3789999998776655543
No 149
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=21.02 E-value=74 Score=24.46 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=33.4
Q ss_pred CEEEEEEcCCHHHHHHH--HHHHHHHHHhcCCCcccccccCCCCEEEEE
Q psy8849 35 DRITIASGSSKRQINAL--AVSIRKNIKNINNNIVNIEGKKSSEWLLLD 81 (112)
Q Consensus 35 dy~VIaT~~S~rh~~ai--a~~v~~~lk~~~~~~~~~EG~~~~~WvllD 81 (112)
...|++=|.|.-|=-++ |..|.+.|++.|....-+.=.+++.|.+.+
T Consensus 39 ~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~ 87 (383)
T 3k3p_A 39 TLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQ 87 (383)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEE
T ss_pred eEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecc
Confidence 47899999999986554 667888888877765444334566798654
No 150
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=20.98 E-value=31 Score=17.58 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=9.0
Q ss_pred hhhhhcchhhhcc
Q psy8849 93 YIRNMYNLEEIWG 105 (112)
Q Consensus 93 e~R~~Y~LE~LW~ 105 (112)
++-+-.||.+||.
T Consensus 18 ~q~eDLNL~SLWE 30 (30)
T 2k84_A 18 DQVEDLNLDSLWE 30 (30)
T ss_dssp TTTGGGTTTSSCC
T ss_pred hhhhccchhhccC
Confidence 3446778888883
No 151
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.76 E-value=1.1e+02 Score=20.74 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNL 30 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~ 30 (112)
+..+++.+++.+. .+-++.++|+.+.
T Consensus 18 t~~la~~~~~~~~--~~~~v~~~dl~~l 43 (192)
T 3fvw_A 18 NRQLAKKAETIIG--DRAQVSYLSYDRV 43 (192)
T ss_dssp HHHHHHHHHHHHT--TSSEEEECCCSSC
T ss_pred HHHHHHHHHHhcC--CCCEEEEEeCccC
Confidence 4678888888885 4568999999864
No 152
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=20.39 E-value=1.4e+02 Score=21.45 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=27.0
Q ss_pred CCeEEEecCCCC---------CccCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Q psy8849 20 QDIKVYDTSNLT---------NLFDRITIASGSSKRQINALAVSIRKNIKNIN 63 (112)
Q Consensus 20 ~dI~vldv~~~~---------~~~dy~VIaT~~S~rh~~aia~~v~~~lk~~~ 63 (112)
-|++++|.+... ..+|.+|+++..+......+... .+.+++.+
T Consensus 192 yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~-~~~l~~~~ 243 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKG-KELIEATG 243 (271)
T ss_dssp CSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHH-HHHHHTTT
T ss_pred CCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHH-HHHHHhCC
Confidence 599999999752 34688888876655544444443 33444433
No 153
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=20.22 E-value=1.4e+02 Score=17.32 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.8
Q ss_pred EEcCCHHHHHHHHHHHHHHHHh-cCCCc
Q psy8849 40 ASGSSKRQINALAVSIRKNIKN-INNNI 66 (112)
Q Consensus 40 aT~~S~rh~~aia~~v~~~lk~-~~~~~ 66 (112)
..|+|..|-+++++.|.+.+.+ .|.++
T Consensus 9 ~~Grs~eqK~~L~~~it~~l~~~lg~p~ 36 (76)
T 3ej9_A 9 RYGRTDEQKRALSAGLLRVISEATGEPR 36 (76)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHCcCc
Confidence 3589999999999999999976 57764
No 154
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=20.18 E-value=1.3e+02 Score=25.18 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCC--Cc--c-CEEEEEEcC
Q psy8849 3 INKRQIIVIKILKDIKAQDIKVYDTSNLT--NL--F-DRITIASGS 43 (112)
Q Consensus 3 ~~~l~~~i~~~l~~kka~dI~vldv~~~~--~~--~-dy~VIaT~~ 43 (112)
++++++.|++.|....+.++.++|+.+.. .+ . |.+|++|.+
T Consensus 63 te~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT 108 (682)
T 2bpo_A 63 AEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFIST 108 (682)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEEC
T ss_pred HHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCc
Confidence 67889999999883445688899887632 12 2 445555544
No 155
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=20.07 E-value=1.1e+02 Score=18.55 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCCCeEEEecCCCCCccCEEEEEE---cCCHHHHHHHHHHHHHHHHhcCCC
Q psy8849 18 KAQDIKVYDTSNLTNLFDRITIAS---GSSKRQINALAVSIRKNIKNINNN 65 (112)
Q Consensus 18 ka~dI~vldv~~~~~~~dy~VIaT---~~S~rh~~aia~~v~~~lk~~~~~ 65 (112)
....+.|.|.++..+-..-.|+.. |.|.-+-+. .|.+.|++.+++
T Consensus 20 ~~~~l~V~d~SG~g~Hf~v~IVS~~F~G~s~v~rHr---~Vy~~L~~e~iH 67 (76)
T 2kz0_A 20 PEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHR---MIYKVLDGLNIH 67 (76)
T ss_dssp TTEEEEEECCSSTTSCCEEEEEEGGGTTCCHHHHHH---HHHHHTTTSCCC
T ss_pred CCcEEEEEECCCCccEEEEEEEchHhCCCCHHHHHH---HHHHHhccCCce
Confidence 446888899886444445555553 333333333 344555554444
Done!