RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8849
(112 letters)
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; 3.00A {Chromobacterium
violaceum} SCOP: d.218.1.12
Length = 130
Score = 131 bits (333), Expect = 2e-41
Identities = 47/111 (42%), Positives = 75/111 (67%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
M I + + I+ L+DIK +DI DTS LT+LF R+ +A+G S RQ+ ALA S++ +K
Sbjct: 1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
+IV EG +S EW+L+D GD+++H+M P +R+ Y++E +WG ++ F
Sbjct: 61 EAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for
structural genomics, U function, structural genomics;
HET: MSE; 1.75A {Zymomonas mobilis subsp}
Length = 136
Score = 128 bits (323), Expect = 9e-40
Identities = 38/108 (35%), Positives = 60/108 (55%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
+ +V L D +A +I + +++ D + IASG S RQ+ A+A + IK
Sbjct: 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIK 76
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKE 108
+ IEG +++W+LLD GDIIIH+ P +R+ YNLE +WG +
Sbjct: 77 AATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFGD 124
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Length = 125
Score = 119 bits (301), Expect = 1e-36
Identities = 29/109 (26%), Positives = 61/109 (55%)
Query: 1 MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
M+ + + + + D KA+ + + ++ + D I G+S++Q+ A+A ++K +
Sbjct: 1 MSNQELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQ 60
Query: 61 NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109
I +EG + + W+L+DLGD+++H+ + R YNLE++WG+
Sbjct: 61 EQGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.009
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 12/35 (34%)
Query: 2 NINKR-QIIVI-----------KILKDIKAQDIKV 24
N N Q V +L IK Q I +
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 30.4 bits (68), Expect = 0.12
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 15/54 (27%)
Query: 12 KILKD-------IKAQDIK--VYDT---SNLTNLFDRITIASGSSKRQINALAV 53
I KD A+DI+ VYDT S+L L I+ I L V
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS---ERIVDCIIRLPV 488
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein
initiative, midwest center for structural genomics,
MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Length = 238
Score = 26.7 bits (59), Expect = 1.9
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 37 ITIASGSSKRQINA--LAVSIRKNIKNINNNIVNIEGKKSSEWLL 79
IT A+GS R++ + + + + I++ GK +SE+
Sbjct: 62 IT-ATGSRMREVYEDDSKICLLHVLPGKHYEILHGNGKPTSEFPT 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 4.4
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 7 QIIVIKILKDIKAQ---DIKVY------------DTSNLTNLFDRITIASGSSKRQINAL 51
+ + + K Q D K++ L L +I + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDH 219
Query: 52 AVSIRKNIKNINNNIVNIEGKKSSEWLLLDLGDI 85
+ +I+ I +I + + K E LL L ++
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
ferri-enantiopyochelin, outer M metal transport; HET:
CIT EFE; 3.26A {Pseudomonas fluorescens}
Length = 748
Score = 25.0 bits (55), Expect = 6.1
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 29 NLTNLFDRITIASGSS 44
N TNL D+ S
Sbjct: 714 NATNLTDKHYYEGCSL 729
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 24.9 bits (55), Expect = 6.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 55 IRKNIKNINNNIVNIEGKKSSEWLLLDLGDIIIHIMN 91
N+ I N NI G + LL+L ++ N
Sbjct: 252 ALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCN 288
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor); TONB-dependent
receptor, integral outer membrane protein,
ferrichrome-iron receptor; HET: PA1 GCN KDO GMH GLC GLA
FTT DAO MYR DDQ; 2.50A {Escherichia coli} SCOP: f.4.3.3
PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A* 1fi1_A* 2fcp_A*
1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 25.0 bits (55), Expect = 6.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 29 NLTNLFDRITIASGSSKRQI 48
++ NLFDR +AS +
Sbjct: 690 HVNNLFDREYVASCFNTYGC 709
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.380
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,737,377
Number of extensions: 94548
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 20
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)