RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8849
         (112 letters)



>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 120

 Score =  100 bits (250), Expect = 2e-29
 Identities = 47/111 (42%), Positives = 75/111 (67%)

Query: 1   MNINKRQIIVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIK 60
           M I +   + I+ L+DIK +DI   DTS LT+LF R+ +A+G S RQ+ ALA S++  +K
Sbjct: 1   MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLK 60

Query: 61  NINNNIVNIEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEIKF 111
               +IV  EG +S EW+L+D GD+++H+M P +R+ Y++E +WG ++  F
Sbjct: 61  EAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGGQKPSF 111


>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328
           {Bacillus halodurans [TaxId: 86665]}
          Length = 113

 Score = 93.0 bits (231), Expect = 1e-26
 Identities = 28/101 (27%), Positives = 58/101 (57%)

Query: 9   IVIKILKDIKAQDIKVYDTSNLTNLFDRITIASGSSKRQINALAVSIRKNIKNINNNIVN 68
           + +  + D KA+ +   +   ++ + D   I  G+S++Q+ A+A  ++K  +     I  
Sbjct: 8   LAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKR 67

Query: 69  IEGKKSSEWLLLDLGDIIIHIMNPYIRNMYNLEEIWGEKEI 109
           +EG + + W+L+DLGD+++H+ +   R  YNLE++WG+   
Sbjct: 68  LEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPT 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.380 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 438,168
Number of extensions: 18963
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 14
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)