BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy885
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/243 (53%), Positives = 159/243 (65%), Gaps = 17/243 (6%)
Query: 25 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVL 84
+ E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV+
Sbjct: 464 KVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKM--FVKGAPEGVI 521
Query: 85 ERCTHARIGSQKVSL------KDFSA----NTRFENLRSLEPKSKVSAIVPWGMKPEDMN 134
+RC + R+G+ +V + K S T + LR L ++ + K E+M
Sbjct: 522 DRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTP-----PKREEMV 576
Query: 135 LADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR 194
L DSTKF YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICR
Sbjct: 577 LDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICR 636
Query: 195 RIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEI 254
RIG+F E ED ++Y+GREFDDLPL+EQ+ A RA F+RVEP HKSKIVE+LQ +EI
Sbjct: 637 RIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEI 696
Query: 255 SAM 257
+AM
Sbjct: 697 TAM 699
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/241 (53%), Positives = 159/241 (65%), Gaps = 16/241 (6%)
Query: 27 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 86
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 466 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKM-FVKGAPEGVIDR 524
Query: 87 CTHARIGSQKVSL------KDFSA----NTRFENLRSLEPKSKVSAIVPWGMKPEDMNLA 136
C + R+G+ +V + K S T + LR L ++ + K E+M L
Sbjct: 525 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTP-----PKREEMVLD 579
Query: 137 DSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
DS++F YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRI
Sbjct: 580 DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI 639
Query: 197 GVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISA 256
G+F E E+ ++Y+GREFDDLPL+EQ+ A RA F+RVEP+HKSKIVE+LQ +EI+A
Sbjct: 640 GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 699
Query: 257 M 257
M
Sbjct: 700 M 700
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/241 (53%), Positives = 159/241 (65%), Gaps = 16/241 (6%)
Query: 27 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 86
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 467 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKM-FVKGAPEGVIDR 525
Query: 87 CTHARIGSQKVSL------KDFSA----NTRFENLRSLEPKSKVSAIVPWGMKPEDMNLA 136
C + R+G+ +V + K S T + LR L ++ + K E+M L
Sbjct: 526 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTP-----PKREEMVLD 580
Query: 137 DSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
DS++F YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRI
Sbjct: 581 DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI 640
Query: 197 GVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISA 256
G+F E E+ ++Y+GREFDDLPL+EQ+ A RA F+RVEP+HKSKIVE+LQ +EI+A
Sbjct: 641 GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 700
Query: 257 M 257
M
Sbjct: 701 M 701
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/241 (53%), Positives = 159/241 (65%), Gaps = 16/241 (6%)
Query: 27 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 86
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 466 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKM-FVKGAPEGVIDR 524
Query: 87 CTHARIGSQKVSL------KDFSA----NTRFENLRSLEPKSKVSAIVPWGMKPEDMNLA 136
C + R+G+ +V + K S T + LR L ++ + K E+M L
Sbjct: 525 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTP-----PKREEMVLD 579
Query: 137 DSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
DS++F YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRI
Sbjct: 580 DSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI 639
Query: 197 GVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISA 256
G+F E E+ ++Y+GREFDDLPL+EQ+ A RA F+RVEP+HKSKIVE+LQ +EI+A
Sbjct: 640 GIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA 699
Query: 257 M 257
M
Sbjct: 700 M 700
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 42/216 (19%)
Query: 76 VKGAPEGVLERCTHARIGSQKVSLKDF---SANTRFENLRSLEPK---------SKVSAI 123
+KGAPE VLERC+ I Q++ L + + T + +L L + S+
Sbjct: 517 MKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYP 576
Query: 124 VPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITG 183
+ E MN S L+F G+V M+DPPR V D++ +CR AGIRVI++TG
Sbjct: 577 PGYAFDVEAMNFPTS--------GLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTG 628
Query: 184 DNKATAEAICRRIGVFTE--------------------EEDTTGKSYSGREFDDLPLSEQ 223
D+ TA+AI +G+ +E +D +G + D+ SE
Sbjct: 629 DHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSEL 688
Query: 224 KAAVARA--RLFSRVEPAHKSKIVEFLQGMNEISAM 257
A+ +F+R P K IVE Q + I A+
Sbjct: 689 VEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAV 724
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 76 VKGAPEGVLERCT----HARIGSQKVSLKDFSANTRFENLRSLEPKSK--VSAIVPWGMK 129
+KGAPE +L+RC+ H + LKD N E L L + +P
Sbjct: 482 MKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLE-LGGLGERVLGFCHLFLPDEQF 540
Query: 130 PEDMNL-ADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKAT 188
PE D F NL FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ T
Sbjct: 541 PEGFQFDTDDVNFPLD--NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT 598
Query: 189 AEAICRRIGVFTEEEDTT--------------------GKSYSGREFDDLPLSEQKAAVA 228
A+AI + +G+ +E +T G + D+ SEQ +
Sbjct: 599 AKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMT-SEQLDDIL 657
Query: 229 RAR---LFSRVEPAHKSKIVEFLQGMNEISAM 257
+ +F+R P K IVE Q I A+
Sbjct: 658 KYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV 689
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 34/212 (16%)
Query: 76 VKGAPEGVLERCT----HARIGSQKVSLKDFSANTRFENLRSLEPKSK--VSAIVPWGMK 129
+KGAPE +L+RC+ H + LKD N E L L + +P
Sbjct: 476 MKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLE-LGGLGERVLGFCHLFLPDEQF 534
Query: 130 PEDMNL-ADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKAT 188
PE D F NL FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ T
Sbjct: 535 PEGFQFDTDDVNFPLD--NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT 592
Query: 189 AEAICRRIGVFTEEEDTT--------------------GKSYSGREFDDLPLSEQKAAVA 228
A+AI + +G+ +E +T G + D+ SEQ +
Sbjct: 593 AKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMT-SEQLDDIL 651
Query: 229 RAR---LFSRVEPAHKSKIVEFLQGMNEISAM 257
+ +F+R P K IVE Q I A+
Sbjct: 652 KYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV 683
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 76 VKGAPEGVLERCTHARIGSQKVSLKDFSANTRFEN--LRSLEPKSKVSAIVPWGMKPEDM 133
+KGAPE +L+RC+ + + LK+ F+N L +V + + +
Sbjct: 512 MKGAPERILDRCSTILLNGAEEPLKE-DMKEAFQNAYLELGGLGERVLGFCHFALPEDKY 570
Query: 134 NL-----ADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKAT 188
N AD F + +L FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ T
Sbjct: 571 NEGYPFDADEPNFPT--TDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT 628
Query: 189 AEAICRRIGVFTEEEDT 205
A+AI + +G+ +E +T
Sbjct: 629 AKAIAKGVGIISEGNET 645
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 32/188 (17%)
Query: 77 KGAPEGVLERCTHARIGSQKV-SLKDFSANTRFENL---RSLEP-KSKVSAIVPWGMKPE 131
KGAPE +LE + S+KV S+ D A +L R + P K+K S PW
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPW----- 477
Query: 132 DMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEA 191
FVG++ + DPPR + ++I R G+ V +ITGD A +
Sbjct: 478 -----------------EFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 520
Query: 192 ICRRIGVFTEEEDTTG--KSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQ 249
RR+G+ T ++ ++ +P+ E + +A F+ V P HK +IV+ LQ
Sbjct: 521 TGRRLGMGTNMYPSSALLGTHKDANLASIPVEE---LIEKADGFAGVFPEHKYEIVKKLQ 577
Query: 250 GMNEISAM 257
I M
Sbjct: 578 ERKHIVGM 585
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 142 ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201
S+E+ +G++ +DPPR + + ++ + G+ + ++TGD A R++G+ T
Sbjct: 522 GSWEI----LGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTN 577
Query: 202 EEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAM 257
+ + D+P SE V A F+ V P HK +VE LQ + AM
Sbjct: 578 IYNA--ERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAM 631
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 76 VKGAPEGVLERCT----HARIGSQKVSLKDFSANTRFENLRSLEPK--SKVSAIVPWGMK 129
+KGAPE +L+RC+ H + LKD N E L L + ++P
Sbjct: 125 MKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLE-LGGLGERVLGFCHLLLPDEQF 183
Query: 130 PEDMNLADSTKFASYEV-NLTFVGVVGMLDPP 160
PE T ++ V NL FVG++ M+DPP
Sbjct: 184 PEGFQF--DTDEVNFPVDNLCFVGLISMIDPP 213
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
GV+ + D R E ++I++ +A GI+ +++TGDN+ A+ + +G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL 183
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
DP + ++I + +GI ++++TGD+K TAEA+ +G+
Sbjct: 553 DPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI 593
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
GV+ + D R E ++I++ +A GI+ +++TGDN+ A+ + +G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL 183
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
G++ + D ++ ++ + GI+V ITGDN +AEAI R +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISREL 180
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
G++ + D ++ ++ + GI+V +ITGDN +AEAI R +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 200
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
G++ + D ++ ++ + GI+V +ITGDN +AEAI R +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 200
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
G++ + D ++ ++ + GI+V +ITGDN +AEAI R +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 494
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
G++ + D ++ ++ + GI+V +ITGDN +AEAI R +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 572
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 76 VKGAPEGVLERCTHARIGSQKVSLKDFSANTRFEN----LRSLEPK--SKVSAIVPWGMK 129
+KGAPE +L+RC+ + +++ L D F+N L L + +P G
Sbjct: 122 MKGAPERILDRCSSILVQGKEIPL-DKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKF 180
Query: 130 PEDMNLADSTKFASYEVN-----LTFVGVVGMLD 158
P KF + E+N L FVG++ M+D
Sbjct: 181 PRGF------KFDTDELNFPTEKLCFVGLMSMID 208
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
D PR + D + + + G+++I+++GD + + + + + +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI 175
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
D PR + D + + + G+++I+++GD + + + + + +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI 175
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
D PR + D + + + G+++I+++GD + + + + + +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI 175
>pdb|2BER|A Chain A, Y370g Active Site Mutant Of The Sialidase From
Micromonospora Viridifaciens In Complex With Beta-Neu5ac
(Sialic Acid)
Length = 601
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 92 IGSQKVSLKDFSANTRFENLRSLEP-------KSKVSAIVPWGMKPEDMNLADSTKFASY 144
I K SL+ A+ ++ S+EP K +V+ VP G P + + + ++
Sbjct: 387 IAVPKPSLQ-LDASPDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAG 445
Query: 145 EVNLTFVGVVGMLDPPRKEVFD 166
+ TF VG+LD R + D
Sbjct: 446 NASTTFTVTVGLLDQARMSIAD 467
>pdb|1W8N|A Chain A, Contribution Of The Active Site Aspartic Acid To Catalysis
In The Bacterial Neuraminidase From Micromonospora
Viridifaciens.
pdb|1W8O|A Chain A, Contribution Of The Active Site Aspartic Acid To Catalysis
In The Bacterial Neuraminidase From Micromonospora
Viridifaciens
Length = 601
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 92 IGSQKVSLKDFSANTRFENLRSLEP-------KSKVSAIVPWGMKPEDMNLADSTKFASY 144
I K SL+ A+ ++ S+EP K +V+ VP G P + + + ++
Sbjct: 387 IAVPKPSLQ-LDASPDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAG 445
Query: 145 EVNLTFVGVVGMLDPPRKEVFD 166
+ TF VG+LD R + D
Sbjct: 446 NASTTFTVTVGLLDQARMSIAD 467
>pdb|1WCQ|A Chain A, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine.
pdb|1WCQ|B Chain B, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine.
pdb|1WCQ|C Chain C, Mutagenesis Of The Nucleophilic Tyrosine In A Bacterial
Sialidase To Phenylalanine
Length = 601
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 92 IGSQKVSLKDFSANTRFENLRSLEP-------KSKVSAIVPWGMKPEDMNLADSTKFASY 144
I K SL+ A+ ++ S+EP K +V+ VP G P + + + ++
Sbjct: 387 IAVPKPSLQ-LDASPDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAG 445
Query: 145 EVNLTFVGVVGMLDPPRKEVFD 166
+ TF VG+LD R + D
Sbjct: 446 NASTTFTVTVGLLDQARMSIAD 467
>pdb|2BZD|A Chain A, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase.
pdb|2BZD|B Chain B, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase.
pdb|2BZD|C Chain C, Galactose Recognition By The Carbohydrate-Binding Module
Of A Bacterial Sialidase
Length = 601
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 92 IGSQKVSLKDFSANTRFENLRSLEP-------KSKVSAIVPWGMKPEDMNLADSTKFASY 144
I K SL+ A+ ++ S+EP K +V+ VP G P + + + ++
Sbjct: 387 IAVPKPSLQ-LDASPDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAG 445
Query: 145 EVNLTFVGVVGMLDPPRKEVFD 166
+ TF VG+LD R + D
Sbjct: 446 NASTTFTVTVGLLDQARMSIAD 467
>pdb|1EUT|A Chain A, Sialidase, Large 68kd Form, Complexed With Galactose
pdb|1EUU|A Chain A, Sialidase Or Neuraminidase, Large 68kd Form
Length = 605
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 92 IGSQKVSLKDFSANTRFENLRSLEP-------KSKVSAIVPWGMKPEDMNLADSTKFASY 144
I K SL+ A+ ++ S+EP K +V+ VP G P + + + ++
Sbjct: 391 IAVPKPSLQ-LDASPDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAG 449
Query: 145 EVNLTFVGVVGMLDPPRKEVFD 166
+ TF VG+LD R + D
Sbjct: 450 NASTTFTVTVGLLDQARMSIAD 471
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 167 SIARCRAAGIRVIVITGDNKATAEAICRRI 196
++ + GI+V ITGDN +AEAI R +
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAISREL 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,886,419
Number of Sequences: 62578
Number of extensions: 244377
Number of successful extensions: 792
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 35
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)