Query psy885
Match_columns 270
No_of_seqs 219 out of 1709
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:49:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0202|consensus 100.0 4.8E-53 1E-57 404.3 22.4 248 11-268 435-693 (972)
2 COG0474 MgtA Cation transport 100.0 4E-51 8.7E-56 412.9 16.9 216 32-269 432-655 (917)
3 KOG0204|consensus 100.0 5.6E-48 1.2E-52 369.4 19.6 237 17-269 509-755 (1034)
4 TIGR01657 P-ATPase-V P-type AT 100.0 3.8E-47 8.2E-52 389.6 22.3 217 38-269 550-818 (1054)
5 TIGR01523 ATPase-IID_K-Na pota 100.0 7.5E-46 1.6E-50 378.3 23.5 222 38-269 523-762 (1053)
6 KOG0208|consensus 100.0 1.3E-45 2.8E-50 357.3 17.0 215 39-268 600-868 (1140)
7 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.5E-44 3.3E-49 366.1 23.6 222 36-269 416-647 (917)
8 PRK10517 magnesium-transportin 100.0 2.2E-44 4.8E-49 363.1 21.5 210 36-269 437-654 (902)
9 TIGR01517 ATPase-IIB_Ca plasma 100.0 2.8E-44 6.1E-49 365.2 22.2 213 35-269 465-685 (941)
10 PRK15122 magnesium-transportin 100.0 6.1E-44 1.3E-48 360.3 24.3 212 36-269 435-654 (903)
11 TIGR01106 ATPase-IIC_X-K sodiu 100.0 4.7E-44 1E-48 364.9 22.9 228 34-269 442-700 (997)
12 PLN03190 aminophospholipid tra 100.0 2.5E-44 5.4E-49 368.9 17.4 224 35-269 598-888 (1178)
13 TIGR01524 ATPase-IIIB_Mg magne 100.0 3.1E-43 6.7E-48 354.4 24.2 210 36-269 402-619 (867)
14 TIGR01652 ATPase-Plipid phosph 100.0 2.7E-44 5.9E-49 369.1 15.5 220 38-269 507-785 (1057)
15 TIGR01522 ATPase-IIA2_Ca golgi 100.0 2.4E-40 5.1E-45 334.7 24.8 202 36-269 424-634 (884)
16 TIGR01647 ATPase-IIIA_H plasma 100.0 4.4E-40 9.6E-45 327.6 19.7 203 36-269 349-551 (755)
17 KOG0206|consensus 100.0 2.7E-41 5.8E-46 338.9 8.9 244 18-269 487-811 (1151)
18 KOG0203|consensus 100.0 2.1E-39 4.5E-44 310.4 7.2 237 23-269 453-722 (1019)
19 KOG0209|consensus 100.0 3.6E-39 7.7E-44 307.6 8.7 216 39-268 569-822 (1160)
20 KOG0210|consensus 100.0 4.9E-38 1.1E-42 295.4 9.1 225 34-269 533-798 (1051)
21 PRK14010 potassium-transportin 100.0 3.2E-33 7E-38 272.5 18.1 156 43-269 365-520 (673)
22 PRK01122 potassium-transportin 100.0 3.1E-33 6.7E-38 272.9 17.1 158 40-269 366-524 (679)
23 TIGR01497 kdpB K+-transporting 100.0 1.8E-29 3.9E-34 246.1 17.2 159 41-269 367-525 (675)
24 KOG0205|consensus 99.9 8.5E-28 1.8E-32 225.6 12.6 210 34-268 390-600 (942)
25 TIGR01494 ATPase_P-type ATPase 99.9 6.4E-25 1.4E-29 210.3 20.1 148 42-269 276-423 (499)
26 COG2216 KdpB High-affinity K+ 99.9 4E-24 8.7E-29 196.9 11.6 155 43-268 370-525 (681)
27 COG2217 ZntA Cation transport 99.9 9.3E-23 2E-27 199.8 12.8 91 147-268 525-615 (713)
28 KOG0207|consensus 99.9 2.1E-21 4.5E-26 189.1 12.2 92 146-268 710-801 (951)
29 PF00702 Hydrolase: haloacid d 99.8 1.9E-20 4.1E-25 158.9 8.2 94 147-269 115-212 (215)
30 PRK11033 zntA zinc/cadmium/mer 99.8 2.9E-19 6.4E-24 178.2 15.7 148 45-269 497-645 (741)
31 TIGR01525 ATPase-IB_hvy heavy 99.7 7.4E-18 1.6E-22 163.6 11.4 109 102-269 355-464 (556)
32 PRK10671 copA copper exporting 99.7 1.3E-16 2.9E-21 161.4 15.7 131 74-269 599-729 (834)
33 TIGR01512 ATPase-IB2_Cd heavy 99.7 6.7E-16 1.4E-20 149.3 13.9 93 146-269 349-442 (536)
34 TIGR01511 ATPase-IB1_Cu copper 99.6 1.2E-15 2.7E-20 148.1 12.4 92 146-269 392-483 (562)
35 COG4087 Soluble P-type ATPase 99.5 2.9E-13 6.3E-18 104.7 8.9 92 148-269 19-110 (152)
36 PF13246 Hydrolase_like2: Puta 99.4 8.6E-14 1.9E-18 103.5 4.6 67 16-89 22-90 (91)
37 TIGR02137 HSK-PSP phosphoserin 98.7 4.2E-08 9.1E-13 83.5 8.4 90 159-269 68-161 (203)
38 PF12710 HAD: haloacid dehalog 98.7 4.2E-08 9E-13 81.7 7.4 92 162-269 92-192 (192)
39 COG0560 SerB Phosphoserine pho 98.6 2.2E-07 4.8E-12 79.6 9.6 94 158-269 76-177 (212)
40 KOG1615|consensus 98.6 9.3E-08 2E-12 79.2 6.8 92 160-268 89-189 (227)
41 TIGR01488 HAD-SF-IB Haloacid D 98.4 7.5E-07 1.6E-11 73.3 7.8 94 160-269 74-175 (177)
42 TIGR01489 DKMTPPase-SF 2,3-dik 98.3 2.6E-06 5.7E-11 70.5 8.6 105 158-267 71-177 (188)
43 TIGR03333 salvage_mtnX 2-hydro 98.3 4.3E-06 9.4E-11 71.5 9.6 102 158-268 69-172 (214)
44 PRK13582 thrH phosphoserine ph 98.2 5.8E-06 1.3E-10 69.8 8.5 91 159-268 68-160 (205)
45 PRK11133 serB phosphoserine ph 98.2 6E-06 1.3E-10 75.2 8.7 94 158-268 180-280 (322)
46 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.2 9.2E-06 2E-10 68.0 9.3 96 159-268 80-179 (201)
47 TIGR00338 serB phosphoserine p 98.2 1E-05 2.2E-10 69.1 9.0 92 159-268 85-184 (219)
48 cd01427 HAD_like Haloacid deha 98.1 1.3E-05 2.9E-10 61.8 8.3 110 155-268 20-129 (139)
49 PLN02954 phosphoserine phospha 98.1 1.9E-05 4.2E-10 67.6 9.5 93 159-267 84-184 (224)
50 PRK09552 mtnX 2-hydroxy-3-keto 98.1 1.8E-05 3.8E-10 67.9 9.0 99 159-268 74-176 (219)
51 TIGR01670 YrbI-phosphatas 3-de 98.0 3.5E-05 7.6E-10 62.6 8.6 69 167-268 36-108 (154)
52 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.0 3.1E-05 6.8E-10 65.1 7.8 95 157-268 85-187 (202)
53 PRK09484 3-deoxy-D-manno-octul 97.8 7E-05 1.5E-09 62.6 6.8 70 166-268 55-128 (183)
54 COG0546 Gph Predicted phosphat 97.8 0.00017 3.6E-09 62.0 9.1 91 157-267 87-177 (220)
55 TIGR01544 HAD-SF-IE haloacid d 97.7 0.00022 4.8E-09 63.4 9.9 45 158-202 120-164 (277)
56 TIGR02726 phenyl_P_delta pheny 97.7 0.00011 2.4E-09 60.7 7.1 72 166-268 41-114 (169)
57 PRK13222 phosphoglycolate phos 97.5 0.00032 7E-09 59.8 7.7 92 157-268 91-182 (226)
58 TIGR01548 HAD-SF-IA-hyp1 haloa 97.5 0.00031 6.6E-09 59.1 6.9 90 157-267 104-193 (197)
59 TIGR01449 PGP_bact 2-phosphogl 97.4 0.0005 1.1E-08 58.1 7.3 41 159-199 85-125 (213)
60 PRK11009 aphA acid phosphatase 97.4 0.00084 1.8E-08 58.5 8.3 81 158-267 113-199 (237)
61 TIGR01454 AHBA_synth_RP 3-amin 97.3 0.0011 2.5E-08 55.8 8.4 90 158-267 74-163 (205)
62 PRK13288 pyrophosphatase PpaX; 97.3 0.0012 2.6E-08 56.1 8.2 89 159-267 82-170 (214)
63 PRK13226 phosphoglycolate phos 97.2 0.0013 2.8E-08 56.8 7.8 89 159-267 95-183 (229)
64 PRK13223 phosphoglycolate phos 97.2 0.0011 2.3E-08 59.0 7.3 43 157-199 99-141 (272)
65 PRK13225 phosphoglycolate phos 97.2 0.002 4.3E-08 57.4 8.9 42 159-200 142-183 (273)
66 PRK08238 hypothetical protein; 97.2 0.0024 5.2E-08 61.3 9.5 84 159-268 72-155 (479)
67 TIGR01672 AphA HAD superfamily 97.1 0.0013 2.9E-08 57.3 6.9 82 159-267 114-199 (237)
68 TIGR01533 lipo_e_P4 5'-nucleot 97.1 0.0043 9.4E-08 55.0 10.2 86 157-268 116-204 (266)
69 TIGR01428 HAD_type_II 2-haloal 97.1 0.0023 4.9E-08 53.6 7.8 41 159-199 92-132 (198)
70 COG1778 Low specificity phosph 97.1 0.00067 1.5E-08 54.7 4.1 70 166-268 42-115 (170)
71 TIGR01422 phosphonatase phosph 97.0 0.0033 7.2E-08 54.9 8.5 87 159-267 99-189 (253)
72 PRK10826 2-deoxyglucose-6-phos 97.0 0.0028 6E-08 54.2 7.8 87 158-267 91-180 (222)
73 PLN02770 haloacid dehalogenase 96.8 0.0058 1.3E-07 53.4 8.1 89 159-267 108-196 (248)
74 TIGR01487 SPP-like sucrose-pho 96.8 0.0094 2E-07 50.7 9.2 41 159-199 18-58 (215)
75 TIGR03351 PhnX-like phosphonat 96.8 0.0068 1.5E-07 51.5 8.2 42 158-199 86-127 (220)
76 PRK13478 phosphonoacetaldehyde 96.8 0.0081 1.8E-07 53.0 8.8 87 159-267 101-191 (267)
77 TIGR01509 HAD-SF-IA-v3 haloaci 96.8 0.007 1.5E-07 49.5 7.9 40 159-199 85-124 (183)
78 PRK06769 hypothetical protein; 96.7 0.0091 2E-07 49.3 7.9 27 160-186 29-55 (173)
79 TIGR01685 MDP-1 magnesium-depe 96.6 0.012 2.5E-07 48.9 8.3 53 147-199 33-86 (174)
80 PHA02530 pseT polynucleotide k 96.6 0.0093 2E-07 53.4 8.2 101 155-267 183-284 (300)
81 PF06888 Put_Phosphatase: Puta 96.6 0.0037 8E-08 54.4 5.3 104 159-268 71-186 (234)
82 COG0561 Cof Predicted hydrolas 96.6 0.0096 2.1E-07 52.3 7.9 41 160-200 21-61 (264)
83 PLN03243 haloacid dehalogenase 96.5 0.0096 2.1E-07 52.6 7.7 89 159-267 109-197 (260)
84 TIGR02253 CTE7 HAD superfamily 96.5 0.011 2.4E-07 50.2 7.6 86 159-267 94-183 (221)
85 COG4359 Uncharacterized conser 96.5 0.007 1.5E-07 50.2 5.9 100 159-267 73-174 (220)
86 PRK14988 GMP/IMP nucleotidase; 96.4 0.012 2.5E-07 50.7 7.1 42 158-199 92-133 (224)
87 TIGR01549 HAD-SF-IA-v1 haloaci 96.4 0.022 4.8E-07 45.5 8.3 40 157-196 62-101 (154)
88 TIGR01990 bPGM beta-phosphoglu 96.4 0.0096 2.1E-07 49.0 6.3 84 159-267 87-173 (185)
89 PF13419 HAD_2: Haloacid dehal 96.4 0.015 3.2E-07 46.6 7.2 91 157-267 75-165 (176)
90 PRK11587 putative phosphatase; 96.3 0.017 3.8E-07 49.2 7.8 40 159-198 83-122 (218)
91 TIGR02009 PGMB-YQAB-SF beta-ph 96.3 0.0077 1.7E-07 49.5 5.4 40 158-199 87-126 (185)
92 TIGR01668 YqeG_hyp_ppase HAD s 96.3 0.032 6.9E-07 45.9 8.9 41 159-199 43-84 (170)
93 TIGR01545 YfhB_g-proteo haloac 96.2 0.04 8.7E-07 47.0 9.4 96 159-269 94-192 (210)
94 TIGR02252 DREG-2 REG-2-like, H 96.2 0.018 3.9E-07 48.3 6.9 40 159-199 105-144 (203)
95 TIGR01662 HAD-SF-IIIA HAD-supe 96.1 0.039 8.5E-07 43.0 8.4 42 158-199 24-73 (132)
96 KOG4383|consensus 96.1 0.02 4.4E-07 56.2 7.5 187 77-264 697-1003(1354)
97 TIGR01656 Histidinol-ppas hist 96.1 0.019 4.2E-07 45.9 6.3 41 159-199 27-82 (147)
98 PRK11590 hypothetical protein; 96.0 0.063 1.4E-06 45.6 9.8 96 159-269 95-193 (211)
99 PRK08942 D,D-heptose 1,7-bisph 96.0 0.039 8.5E-07 45.6 8.3 26 160-185 30-55 (181)
100 smart00577 CPDc catalytic doma 96.0 0.012 2.5E-07 47.4 4.8 85 157-267 43-130 (148)
101 TIGR01681 HAD-SF-IIIC HAD-supe 95.8 0.038 8.3E-07 43.2 6.9 39 159-197 29-68 (128)
102 PRK06698 bifunctional 5'-methy 95.8 0.028 6E-07 53.7 7.2 85 159-267 330-415 (459)
103 PLN02575 haloacid dehalogenase 95.8 0.045 9.8E-07 51.0 8.3 43 158-200 215-257 (381)
104 COG2179 Predicted hydrolase of 95.8 0.065 1.4E-06 43.9 8.1 72 159-262 46-120 (175)
105 PLN02779 haloacid dehalogenase 95.7 0.047 1E-06 48.9 8.0 38 159-196 144-181 (286)
106 PLN02811 hydrolase 95.7 0.028 6E-07 48.0 6.1 32 158-189 77-108 (220)
107 PRK09449 dUMP phosphatase; Pro 95.6 0.044 9.5E-07 46.7 7.2 40 159-199 95-134 (224)
108 PLN02940 riboflavin kinase 95.6 0.037 8E-07 51.6 7.2 86 159-267 93-182 (382)
109 TIGR02254 YjjG/YfnB HAD superf 95.6 0.059 1.3E-06 45.6 8.0 41 159-200 97-137 (224)
110 PRK05446 imidazole glycerol-ph 95.6 0.056 1.2E-06 49.9 8.2 26 158-183 29-54 (354)
111 TIGR01675 plant-AP plant acid 95.5 0.17 3.8E-06 43.8 10.4 89 157-266 118-210 (229)
112 PRK12702 mannosyl-3-phosphogly 95.5 0.2 4.4E-06 45.0 10.9 40 160-199 19-58 (302)
113 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.4 0.066 1.4E-06 46.5 7.7 49 152-200 17-67 (242)
114 PF09419 PGP_phosphatase: Mito 95.2 0.15 3.4E-06 42.0 8.7 74 157-261 57-145 (168)
115 smart00775 LNS2 LNS2 domain. T 95.1 0.18 3.9E-06 41.0 8.8 96 157-267 25-134 (157)
116 COG3769 Predicted hydrolase (H 94.7 0.28 6.1E-06 42.1 9.1 39 162-200 26-64 (274)
117 TIGR01261 hisB_Nterm histidino 94.6 0.12 2.5E-06 42.3 6.5 41 159-199 29-84 (161)
118 TIGR02247 HAD-1A3-hyp Epoxide 94.4 0.067 1.5E-06 45.1 4.9 29 158-186 93-121 (211)
119 TIGR01691 enolase-ppase 2,3-di 94.3 0.18 4E-06 43.4 7.3 41 156-196 92-132 (220)
120 TIGR00213 GmhB_yaeD D,D-heptos 94.0 0.42 9.1E-06 39.3 8.6 26 160-185 27-52 (176)
121 TIGR01664 DNA-3'-Pase DNA 3'-p 93.8 0.24 5.2E-06 40.6 6.8 40 160-199 43-94 (166)
122 TIGR01686 FkbH FkbH-like domai 93.5 0.38 8.1E-06 43.7 8.2 81 159-268 31-119 (320)
123 TIGR01993 Pyr-5-nucltdase pyri 92.8 0.42 9E-06 39.3 6.8 38 159-199 84-121 (184)
124 TIGR00099 Cof-subfamily Cof su 92.6 1 2.2E-05 39.1 9.5 41 159-199 16-56 (256)
125 PRK10530 pyridoxal phosphate ( 92.6 1.3 2.9E-05 38.6 10.1 41 159-199 20-60 (272)
126 PLN02919 haloacid dehalogenase 92.3 0.48 1E-05 50.0 8.0 41 159-199 161-201 (1057)
127 PRK10563 6-phosphogluconate ph 92.2 0.27 5.8E-06 41.7 5.1 39 158-199 87-125 (221)
128 PHA02597 30.2 hypothetical pro 92.1 0.82 1.8E-05 38.0 7.9 85 159-267 74-160 (197)
129 COG4030 Uncharacterized protei 91.8 0.59 1.3E-05 40.4 6.5 42 159-201 83-124 (315)
130 TIGR02251 HIF-SF_euk Dullard-l 91.3 0.22 4.8E-06 40.6 3.4 43 156-199 39-81 (162)
131 PF08282 Hydrolase_3: haloacid 91.3 2.1 4.5E-05 36.2 9.7 87 158-258 14-101 (254)
132 COG0241 HisB Histidinol phosph 91.3 0.75 1.6E-05 38.4 6.5 90 160-267 32-137 (181)
133 KOG3120|consensus 91.0 1.4 3E-05 38.0 7.9 41 159-199 84-125 (256)
134 PRK09456 ?-D-glucose-1-phospha 90.9 1.1 2.3E-05 37.5 7.3 32 159-190 84-115 (199)
135 PF03767 Acid_phosphat_B: HAD 90.5 1.3 2.7E-05 38.4 7.6 88 158-266 114-206 (229)
136 PRK15126 thiamin pyrimidine py 90.5 2.8 6E-05 36.7 10.0 41 159-199 19-59 (272)
137 PRK01158 phosphoglycolate phos 90.2 0.61 1.3E-05 39.7 5.3 40 160-199 21-60 (230)
138 PLN02645 phosphoglycolate phos 89.8 0.79 1.7E-05 41.5 5.9 48 152-199 37-87 (311)
139 TIGR02461 osmo_MPG_phos mannos 89.4 0.77 1.7E-05 39.5 5.3 42 158-199 14-55 (225)
140 PF13344 Hydrolase_6: Haloacid 89.1 0.21 4.7E-06 37.4 1.5 49 152-200 7-58 (101)
141 TIGR01680 Veg_Stor_Prot vegeta 88.5 6.1 0.00013 35.2 10.3 42 157-199 143-188 (275)
142 TIGR01486 HAD-SF-IIB-MPGP mann 88.4 0.97 2.1E-05 39.4 5.3 40 160-199 17-56 (256)
143 PRK00192 mannosyl-3-phosphogly 88.3 0.99 2.1E-05 39.8 5.4 42 158-199 20-61 (273)
144 PRK10725 fructose-1-P/6-phosph 88.1 1.6 3.4E-05 35.8 6.2 39 160-200 89-127 (188)
145 TIGR01684 viral_ppase viral ph 87.9 1.2 2.5E-05 40.1 5.5 53 160-216 146-199 (301)
146 PHA03398 viral phosphatase sup 87.6 1.2 2.6E-05 40.1 5.4 41 160-200 148-189 (303)
147 TIGR01452 PGP_euk phosphoglyco 87.6 2.8 6.1E-05 37.1 7.9 49 152-200 11-62 (279)
148 PRK10976 putative hydrolase; P 87.5 1.1 2.5E-05 39.0 5.3 41 159-199 19-59 (266)
149 PRK10513 sugar phosphate phosp 87.1 1.3 2.7E-05 38.8 5.3 41 159-199 20-60 (270)
150 TIGR01482 SPP-subfamily Sucros 86.5 1.5 3.3E-05 37.0 5.4 41 159-199 15-55 (225)
151 PRK10444 UMP phosphatase; Prov 86.2 0.85 1.8E-05 39.9 3.7 48 152-199 10-60 (248)
152 PLN02887 hydrolase family prot 85.8 5.5 0.00012 39.4 9.4 48 152-199 317-365 (580)
153 TIGR02463 MPGP_rel mannosyl-3- 85.8 0.73 1.6E-05 39.1 3.0 30 240-269 179-212 (221)
154 TIGR02463 MPGP_rel mannosyl-3- 85.5 1.8 3.9E-05 36.6 5.3 38 162-199 19-56 (221)
155 TIGR01458 HAD-SF-IIA-hyp3 HAD- 85.4 1.2 2.7E-05 39.0 4.3 49 152-200 10-65 (257)
156 TIGR01457 HAD-SF-IIA-hyp2 HAD- 84.2 2.3 4.9E-05 37.1 5.5 50 152-201 10-62 (249)
157 PRK10748 flavin mononucleotide 84.2 2.1 4.5E-05 37.0 5.2 28 159-187 113-140 (238)
158 TIGR01493 HAD-SF-IA-v2 Haloaci 83.6 0.79 1.7E-05 37.2 2.2 80 159-267 90-171 (175)
159 PRK03669 mannosyl-3-phosphogly 83.5 2.4 5.3E-05 37.3 5.4 40 160-199 25-64 (271)
160 PRK00192 mannosyl-3-phosphogly 83.4 4.1 8.8E-05 35.9 6.8 30 240-269 190-224 (273)
161 COG1011 Predicted hydrolase (H 83.1 7 0.00015 32.8 8.0 42 157-199 97-138 (229)
162 PRK03669 mannosyl-3-phosphogly 83.0 1.4 2.9E-05 38.9 3.6 35 235-269 180-223 (271)
163 TIGR02244 HAD-IG-Ncltidse HAD 83.0 7.9 0.00017 35.7 8.6 99 161-262 186-304 (343)
164 PRK14501 putative bifunctional 83.0 4.7 0.0001 40.9 7.8 39 159-197 514-553 (726)
165 TIGR01663 PNK-3'Pase polynucle 80.8 4.1 8.8E-05 39.8 6.2 40 160-199 198-249 (526)
166 TIGR01482 SPP-subfamily Sucros 80.1 1.2 2.6E-05 37.7 2.1 31 239-269 148-182 (225)
167 TIGR01486 HAD-SF-IIB-MPGP mann 79.0 2.2 4.7E-05 37.2 3.4 30 240-269 176-211 (256)
168 PRK10513 sugar phosphate phosp 77.7 1.3 2.8E-05 38.7 1.6 31 239-269 195-229 (270)
169 PRK01158 phosphoglycolate phos 77.4 1.3 2.8E-05 37.6 1.6 35 235-269 150-190 (230)
170 PRK15126 thiamin pyrimidine py 77.1 1.4 3.1E-05 38.6 1.7 35 235-269 181-221 (272)
171 TIGR02461 osmo_MPG_phos mannos 76.8 2.4 5.2E-05 36.4 3.0 32 238-269 179-216 (225)
172 PF12689 Acid_PPase: Acid Phos 76.3 8.3 0.00018 31.8 5.9 41 159-199 45-86 (169)
173 TIGR01484 HAD-SF-IIB HAD-super 75.7 2.7 5.8E-05 35.0 3.0 31 239-269 162-196 (204)
174 PRK10976 putative hydrolase; P 75.1 1.5 3.3E-05 38.2 1.4 35 235-269 183-223 (266)
175 TIGR01485 SPP_plant-cyano sucr 74.5 2.7 5.9E-05 36.4 2.8 31 239-269 166-200 (249)
176 PRK10530 pyridoxal phosphate ( 74.4 1.8 3.9E-05 37.7 1.6 30 240-269 199-232 (272)
177 TIGR01689 EcbF-BcbF capsule bi 73.0 5 0.00011 31.4 3.7 31 158-188 23-53 (126)
178 TIGR02471 sucr_syn_bact_C sucr 72.1 1.9 4.2E-05 36.9 1.3 30 240-269 159-192 (236)
179 PF08282 Hydrolase_3: haloacid 72.1 2.6 5.6E-05 35.6 2.0 32 238-269 184-219 (254)
180 PTZ00445 p36-lilke protein; Pr 71.5 6.2 0.00013 33.8 4.1 30 158-187 74-103 (219)
181 TIGR00685 T6PP trehalose-phosp 70.1 5.9 0.00013 34.3 3.8 37 232-268 159-199 (244)
182 PF05116 S6PP: Sucrose-6F-phos 69.9 2.7 5.9E-05 36.7 1.7 30 239-268 164-197 (247)
183 COG0637 Predicted phosphatase/ 69.8 15 0.00032 31.3 6.3 55 158-216 85-139 (221)
184 TIGR00099 Cof-subfamily Cof su 69.6 2.8 6.1E-05 36.3 1.7 35 235-269 181-221 (256)
185 TIGR01456 CECR5 HAD-superfamil 69.2 29 0.00063 31.4 8.4 48 152-199 9-64 (321)
186 PTZ00174 phosphomannomutase; P 68.7 3.6 7.9E-05 35.7 2.3 31 239-269 187-221 (247)
187 KOG3040|consensus 68.7 14 0.00031 31.7 5.6 54 148-201 12-68 (262)
188 PF13380 CoA_binding_2: CoA bi 67.4 9.8 0.00021 29.1 4.2 40 160-199 64-104 (116)
189 TIGR02250 FCP1_euk FCP1-like p 67.4 11 0.00024 30.4 4.7 42 157-199 56-97 (156)
190 COG0647 NagD Predicted sugar p 66.6 8.2 0.00018 34.3 4.0 46 150-195 15-60 (269)
191 TIGR01484 HAD-SF-IIB HAD-super 66.0 16 0.00034 30.3 5.5 38 159-196 17-54 (204)
192 PTZ00174 phosphomannomutase; P 65.0 13 0.00027 32.3 4.9 34 159-192 22-55 (247)
193 PRK10187 trehalose-6-phosphate 64.9 6.5 0.00014 34.7 3.1 31 239-269 173-207 (266)
194 TIGR01501 MthylAspMutase methy 63.4 49 0.0011 26.1 7.5 55 145-199 50-112 (134)
195 PLN02382 probable sucrose-phos 63.4 7.1 0.00015 36.9 3.2 35 235-269 168-211 (413)
196 COG3700 AphA Acid phosphatase 63.3 22 0.00048 29.8 5.6 80 160-267 115-199 (237)
197 PF05761 5_nucleotid: 5' nucle 63.2 15 0.00033 35.1 5.4 98 162-262 186-305 (448)
198 cd00860 ThrRS_anticodon ThrRS 62.4 28 0.00062 24.4 5.7 47 153-199 6-53 (91)
199 TIGR01485 SPP_plant-cyano sucr 61.7 11 0.00024 32.6 4.0 44 158-201 20-63 (249)
200 PTZ00445 p36-lilke protein; Pr 61.4 23 0.00051 30.4 5.6 72 159-258 26-97 (219)
201 PLN02887 hydrolase family prot 57.9 5.6 0.00012 39.3 1.5 30 240-269 507-540 (580)
202 PRK14502 bifunctional mannosyl 57.0 20 0.00043 36.1 5.1 40 160-199 434-473 (694)
203 PLN02177 glycerol-3-phosphate 56.2 63 0.0014 31.4 8.4 88 160-269 111-205 (497)
204 COG1832 Predicted CoA-binding 56.0 24 0.00052 28.1 4.5 40 144-183 12-51 (140)
205 PF03129 HGTP_anticodon: Antic 55.7 35 0.00075 24.4 5.2 48 152-199 3-54 (94)
206 PRK10187 trehalose-6-phosphate 55.7 17 0.00037 32.0 4.1 40 159-198 36-76 (266)
207 PF00875 DNA_photolyase: DNA p 55.0 97 0.0021 24.7 8.3 38 162-199 53-90 (165)
208 TIGR01458 HAD-SF-IIA-hyp3 HAD- 54.8 77 0.0017 27.6 8.2 27 161-187 122-148 (257)
209 PF14336 DUF4392: Domain of un 54.6 52 0.0011 29.6 7.1 38 162-199 63-101 (291)
210 COG0078 ArgF Ornithine carbamo 53.4 68 0.0015 29.1 7.4 34 162-199 90-123 (310)
211 cd00859 HisRS_anticodon HisRS 52.4 44 0.00094 23.0 5.2 47 153-199 6-53 (91)
212 PLN02423 phosphomannomutase 50.0 14 0.00029 32.2 2.5 29 240-269 189-221 (245)
213 cd04906 ACT_ThrD-I_1 First of 49.7 26 0.00056 25.0 3.6 34 152-185 42-76 (85)
214 PF08235 LNS2: LNS2 (Lipin/Ned 49.6 1.4E+02 0.0031 24.3 9.4 95 158-267 26-134 (157)
215 PRK14502 bifunctional mannosyl 48.4 16 0.00036 36.7 3.1 107 159-269 511-648 (694)
216 cd05017 SIS_PGI_PMI_1 The memb 47.9 45 0.00098 25.2 5.0 37 160-198 55-91 (119)
217 TIGR03849 arch_ComA phosphosul 47.7 79 0.0017 27.6 6.8 23 161-185 40-62 (237)
218 PF05822 UMPH-1: Pyrimidine 5' 47.7 60 0.0013 28.5 6.1 44 159-202 90-133 (246)
219 PRK02261 methylaspartate mutas 47.5 64 0.0014 25.4 5.8 79 107-199 28-114 (137)
220 TIGR01460 HAD-SF-IIA Haloacid 47.4 22 0.00049 30.5 3.5 48 152-199 7-58 (236)
221 PF08645 PNK3P: Polynucleotide 47.2 18 0.00039 29.3 2.7 23 161-183 31-53 (159)
222 PF12017 Tnp_P_element: Transp 46.7 33 0.00072 29.9 4.4 39 162-200 196-234 (236)
223 cd01994 Alpha_ANH_like_IV This 45.5 1.8E+02 0.0039 24.3 8.8 15 185-199 46-60 (194)
224 PRK14184 bifunctional 5,10-met 44.7 52 0.0011 29.5 5.4 32 231-262 134-167 (286)
225 PLN02591 tryptophan synthase 44.7 1.4E+02 0.0031 26.2 8.1 26 238-263 174-199 (250)
226 PF02219 MTHFR: Methylenetetra 44.7 31 0.00068 30.7 4.1 43 145-187 68-111 (287)
227 PRK14186 bifunctional 5,10-met 44.5 50 0.0011 29.8 5.3 46 217-262 121-168 (297)
228 COG2503 Predicted secreted aci 44.1 2E+02 0.0044 25.4 8.7 82 160-267 123-208 (274)
229 TIGR00603 rad25 DNA repair hel 43.8 1.2E+02 0.0026 31.1 8.3 49 173-253 494-542 (732)
230 PRK14170 bifunctional 5,10-met 43.0 56 0.0012 29.3 5.3 32 231-262 134-167 (284)
231 TIGR03679 arCOG00187 arCOG0018 42.0 1.7E+02 0.0037 24.9 8.1 34 164-198 75-113 (218)
232 COG1365 Predicted ATPase (PP-l 41.6 69 0.0015 27.7 5.3 78 169-262 78-164 (255)
233 PRK09479 glpX fructose 1,6-bis 41.3 58 0.0013 29.6 5.1 38 154-193 161-198 (319)
234 cd00738 HGTP_anticodon HGTP an 41.2 71 0.0015 22.4 4.9 41 159-199 15-56 (94)
235 PRK12388 fructose-1,6-bisphosp 41.1 59 0.0013 29.5 5.2 38 154-193 158-195 (321)
236 PRK14994 SAM-dependent 16S rib 40.8 2.4E+02 0.0053 25.2 9.2 39 156-200 98-136 (287)
237 cd01017 AdcA Metal binding pro 40.7 81 0.0018 27.8 6.1 55 145-199 187-245 (282)
238 cd01137 PsaA Metal binding pro 40.6 82 0.0018 28.0 6.1 54 146-199 194-251 (287)
239 cd01516 FBPase_glpX Bacterial 40.0 64 0.0014 29.2 5.2 38 154-193 158-195 (309)
240 cd05014 SIS_Kpsf KpsF-like pro 39.7 39 0.00084 25.5 3.4 29 160-188 59-87 (128)
241 TIGR00676 fadh2 5,10-methylene 39.5 44 0.00095 29.6 4.2 41 146-186 57-98 (272)
242 cd01019 ZnuA Zinc binding prot 38.9 97 0.0021 27.5 6.3 54 146-199 196-253 (286)
243 TIGR02432 lysidine_TilS_N tRNA 38.6 2.1E+02 0.0046 23.1 8.1 23 244-266 91-113 (189)
244 PLN02363 phosphoribosylanthran 37.9 83 0.0018 27.7 5.6 21 178-198 103-123 (256)
245 TIGR00330 glpX fructose-1,6-bi 37.6 73 0.0016 28.9 5.2 38 154-193 158-195 (321)
246 PRK03692 putative UDP-N-acetyl 37.1 2.8E+02 0.0061 24.1 8.9 86 165-257 95-187 (243)
247 cd02071 MM_CoA_mut_B12_BD meth 37.0 1.2E+02 0.0026 23.0 5.8 55 145-199 48-104 (122)
248 cd03017 PRX_BCP Peroxiredoxin 36.9 97 0.0021 23.5 5.4 25 172-196 54-78 (140)
249 PRK12415 fructose 1,6-bisphosp 36.7 77 0.0017 28.9 5.2 38 154-193 159-196 (322)
250 cd00537 MTHFR Methylenetetrahy 36.6 45 0.00097 29.4 3.8 42 147-188 58-100 (274)
251 PRK15108 biotin synthase; Prov 36.6 2.7E+02 0.0058 25.5 9.0 23 234-256 166-188 (345)
252 PF03031 NIF: NLI interacting 36.5 48 0.001 26.2 3.7 37 160-197 37-73 (159)
253 TIGR01459 HAD-SF-IIA-hyp4 HAD- 36.4 40 0.00086 29.0 3.3 28 161-189 140-167 (242)
254 TIGR02329 propionate_PrpR prop 36.4 53 0.0011 32.1 4.5 36 160-199 130-165 (526)
255 PF00271 Helicase_C: Helicase 36.2 85 0.0018 21.2 4.5 16 170-185 2-17 (78)
256 KOG2882|consensus 35.9 70 0.0015 28.9 4.8 48 152-199 31-81 (306)
257 PRK14194 bifunctional 5,10-met 35.9 3.1E+02 0.0068 24.8 9.0 39 223-261 128-168 (301)
258 TIGR02765 crypto_DASH cryptoch 35.8 2E+02 0.0044 27.0 8.3 38 162-199 61-98 (429)
259 PF06941 NT5C: 5' nucleotidase 35.7 32 0.0007 28.4 2.6 41 159-199 73-121 (191)
260 cd00861 ProRS_anticodon_short 35.4 66 0.0014 22.7 3.9 41 159-199 15-56 (94)
261 PF03320 FBPase_glpX: Bacteria 35.3 46 0.001 30.1 3.5 38 154-193 158-195 (309)
262 PRK09545 znuA high-affinity zi 35.2 1.2E+02 0.0026 27.4 6.3 54 146-199 220-277 (311)
263 cd06279 PBP1_LacI_like_3 Ligan 35.1 2.9E+02 0.0063 23.7 9.2 17 169-185 28-44 (283)
264 PF00585 Thr_dehydrat_C: C-ter 34.7 33 0.00072 25.0 2.2 37 147-186 50-86 (91)
265 cd03013 PRX5_like Peroxiredoxi 34.6 98 0.0021 24.7 5.2 35 164-198 53-88 (155)
266 TIGR00381 cdhD CO dehydrogenas 34.3 3.4E+02 0.0074 25.5 9.1 90 168-265 149-254 (389)
267 PF00763 THF_DHG_CYH: Tetrahyd 34.2 1.2E+02 0.0026 23.1 5.3 43 157-199 9-60 (117)
268 TIGR00640 acid_CoA_mut_C methy 33.8 1.4E+02 0.0031 23.3 5.8 56 144-199 50-107 (132)
269 TIGR02764 spore_ybaN_pdaB poly 33.7 2.6E+02 0.0057 22.7 8.3 34 153-186 9-44 (191)
270 cd00532 MGS-like MGS-like doma 33.6 2E+02 0.0044 21.4 8.0 42 153-199 3-44 (112)
271 KOG1250|consensus 33.2 2.6E+02 0.0057 26.5 8.1 72 163-266 100-174 (457)
272 TIGR03679 arCOG00187 arCOG0018 33.0 3.1E+02 0.0066 23.3 9.1 17 183-199 42-58 (218)
273 PF13309 HTH_22: HTH domain 32.9 37 0.0008 23.0 2.0 20 234-253 19-38 (64)
274 PF05240 APOBEC_C: APOBEC-like 32.6 61 0.0013 21.5 2.9 23 162-184 2-24 (55)
275 COG0309 HypE Hydrogenase matur 32.5 2.5E+02 0.0053 25.9 7.8 77 153-252 219-298 (339)
276 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.5 49 0.0011 24.9 3.0 26 161-186 59-84 (126)
277 PRK06131 dihydroxy-acid dehydr 32.4 53 0.0012 32.4 3.7 71 158-247 244-317 (571)
278 PRK14179 bifunctional 5,10-met 32.3 3.7E+02 0.0081 24.1 8.9 45 216-260 120-166 (284)
279 PRK14189 bifunctional 5,10-met 31.8 2.3E+02 0.0051 25.4 7.5 47 216-262 120-168 (285)
280 PRK13017 dihydroxy-acid dehydr 31.7 45 0.00098 33.0 3.1 71 159-248 254-327 (596)
281 COG1225 Bcp Peroxiredoxin [Pos 31.6 1.2E+02 0.0026 24.7 5.1 35 165-199 54-88 (157)
282 cd02072 Glm_B12_BD B12 binding 31.5 2.3E+02 0.005 22.1 6.6 55 145-199 48-110 (128)
283 COG0159 TrpA Tryptophan syntha 31.2 99 0.0022 27.4 4.9 85 145-258 14-101 (265)
284 TIGR00129 fdhD_narQ formate de 30.8 94 0.002 27.0 4.7 35 165-199 182-216 (237)
285 PF01380 SIS: SIS domain SIS d 30.6 88 0.0019 23.4 4.1 33 157-189 62-94 (131)
286 PF01297 TroA: Periplasmic sol 30.5 1.1E+02 0.0023 26.4 5.1 54 146-199 167-224 (256)
287 PF00578 AhpC-TSA: AhpC/TSA fa 30.4 1.2E+02 0.0026 22.3 4.8 58 142-199 21-83 (124)
288 TIGR02471 sucr_syn_bact_C sucr 30.4 49 0.0011 28.1 2.9 35 164-199 20-54 (236)
289 PRK00724 formate dehydrogenase 30.3 1E+02 0.0022 27.3 4.9 35 165-199 211-245 (263)
290 PF04273 DUF442: Putative phos 30.0 1E+02 0.0023 23.3 4.3 72 165-262 17-97 (110)
291 cd04728 ThiG Thiazole synthase 30.0 2.1E+02 0.0045 25.2 6.6 110 145-263 90-208 (248)
292 TIGR00110 ilvD dihydroxy-acid 29.9 71 0.0015 31.3 4.1 70 159-247 223-295 (535)
293 TIGR00677 fadh2_euk methylenet 29.7 83 0.0018 28.0 4.3 40 147-186 59-99 (281)
294 cd03018 PRX_AhpE_like Peroxire 29.7 1.4E+02 0.0031 22.9 5.3 9 174-182 83-91 (149)
295 cd05009 SIS_GlmS_GlmD_2 SIS (S 29.5 79 0.0017 24.5 3.8 31 156-186 70-100 (153)
296 PRK05265 pyridoxine 5'-phospha 29.4 95 0.0021 27.1 4.4 38 161-199 112-149 (239)
297 PRK09432 metF 5,10-methylenete 29.3 73 0.0016 28.6 3.9 41 146-186 81-122 (296)
298 PF09010 AsiA: Anti-Sigma Fact 29.3 11 0.00023 27.7 -1.2 48 184-249 28-75 (91)
299 cd05013 SIS_RpiR RpiR-like pro 29.2 61 0.0013 24.4 3.0 26 162-187 74-99 (139)
300 PRK06450 threonine synthase; V 29.1 3.2E+02 0.0069 25.0 8.1 71 163-265 84-156 (338)
301 cd05710 SIS_1 A subgroup of th 28.6 57 0.0012 24.7 2.7 29 160-188 59-87 (120)
302 cd02971 PRX_family Peroxiredox 28.6 1.3E+02 0.0029 22.6 4.9 33 164-196 45-77 (140)
303 TIGR00268 conserved hypothetic 27.9 3.4E+02 0.0073 23.5 7.8 22 245-266 100-121 (252)
304 TIGR02873 spore_ylxY probable 27.5 4.3E+02 0.0093 23.3 8.7 42 154-195 89-132 (268)
305 cd04795 SIS SIS domain. SIS (S 27.5 1.6E+02 0.0034 20.2 4.7 22 161-182 60-81 (87)
306 COG1433 Uncharacterized conser 27.4 1E+02 0.0022 23.9 3.9 26 166-191 77-102 (121)
307 cd01993 Alpha_ANH_like_II This 27.4 3.2E+02 0.0069 21.8 7.6 27 240-266 94-120 (185)
308 PLN02580 trehalose-phosphatase 27.3 68 0.0015 30.1 3.4 34 160-194 142-175 (384)
309 cd04922 ACT_AKi-HSDH-ThrA_2 AC 27.3 1.6E+02 0.0036 18.9 4.6 32 151-182 4-36 (66)
310 cd00419 Ferrochelatase_C Ferro 27.1 1.4E+02 0.0031 23.3 4.8 36 160-195 75-115 (135)
311 PRK00208 thiG thiazole synthas 26.9 2.6E+02 0.0056 24.6 6.7 111 144-263 89-208 (250)
312 cd01917 ACS_2 Acetyl-CoA synth 26.7 2.3E+02 0.005 25.4 6.4 24 237-260 139-162 (287)
313 TIGR03556 photolyase_8HDF deox 26.6 4.5E+02 0.0097 25.2 9.0 39 161-199 54-92 (471)
314 PRK12448 dihydroxy-acid dehydr 26.3 85 0.0018 31.3 4.0 69 160-247 253-325 (615)
315 cd04907 ACT_ThrD-I_2 Second of 26.1 99 0.0022 21.9 3.4 36 147-186 41-76 (81)
316 COG0313 Predicted methyltransf 26.1 2.3E+02 0.0051 25.3 6.3 44 152-201 87-130 (275)
317 PF02634 FdhD-NarQ: FdhD/NarQ 26.1 94 0.002 26.9 3.9 35 165-199 182-216 (236)
318 PRK00911 dihydroxy-acid dehydr 25.9 95 0.0021 30.6 4.2 71 158-247 241-314 (552)
319 cd00858 GlyRS_anticodon GlyRS 25.8 1.6E+02 0.0034 22.3 4.8 46 153-199 31-79 (121)
320 COG1127 Ttg2A ABC-type transpo 25.5 96 0.0021 27.4 3.7 44 157-201 176-221 (263)
321 PRK15424 propionate catabolism 25.4 1E+02 0.0022 30.4 4.3 33 162-198 142-174 (538)
322 TIGR02826 RNR_activ_nrdG3 anae 25.4 1E+02 0.0022 24.6 3.8 46 151-197 65-111 (147)
323 PF07085 DRTGG: DRTGG domain; 25.2 1.5E+02 0.0033 21.7 4.5 33 166-198 52-86 (105)
324 PLN02205 alpha,alpha-trehalose 25.2 66 0.0014 33.5 3.2 29 240-268 762-797 (854)
325 COG2247 LytB Putative cell wal 25.2 4.9E+02 0.011 23.9 8.3 112 151-265 79-232 (337)
326 PRK14191 bifunctional 5,10-met 25.2 3.9E+02 0.0084 24.0 7.7 46 216-261 119-166 (285)
327 cd04919 ACT_AK-Hom3_2 ACT doma 25.1 1.9E+02 0.0041 18.7 4.6 32 151-182 4-36 (66)
328 COG4750 LicC CTP:phosphocholin 25.1 76 0.0017 27.0 3.0 37 161-197 31-68 (231)
329 COG0279 GmhA Phosphoheptose is 25.0 92 0.002 25.7 3.4 42 147-190 110-151 (176)
330 TIGR00559 pdxJ pyridoxine 5'-p 24.8 1.3E+02 0.0027 26.3 4.3 38 161-199 109-146 (237)
331 PRK00075 cbiD cobalt-precorrin 24.6 1.4E+02 0.003 27.8 4.9 73 141-221 161-240 (361)
332 COG0415 PhrB Deoxyribodipyrimi 24.6 3.9E+02 0.0085 25.8 8.0 38 162-199 55-92 (461)
333 PRK12483 threonine dehydratase 24.4 2.6E+02 0.0057 27.3 7.0 33 231-266 113-145 (521)
334 COG0647 NagD Predicted sugar p 24.2 1.2E+02 0.0025 27.0 4.2 31 177-214 209-239 (269)
335 PRK11840 bifunctional sulfur c 24.2 2.7E+02 0.0058 25.5 6.5 51 145-195 164-217 (326)
336 PLN03017 trehalose-phosphatase 24.1 2.1E+02 0.0046 26.6 6.0 34 159-193 133-166 (366)
337 cd00842 MPP_ASMase acid sphing 24.1 82 0.0018 27.8 3.3 36 150-186 42-79 (296)
338 PRK14176 bifunctional 5,10-met 24.0 3.5E+02 0.0076 24.3 7.2 32 231-262 141-174 (287)
339 TIGR01452 PGP_euk phosphoglyco 24.0 3.8E+02 0.0083 23.4 7.5 22 161-183 145-166 (279)
340 cd01453 vWA_transcription_fact 24.0 2.4E+02 0.0051 23.1 5.8 35 163-197 124-159 (183)
341 COG1494 GlpX Fructose-1,6-bisp 23.9 1E+02 0.0022 27.8 3.6 37 154-192 159-195 (332)
342 cd04736 MDH_FMN Mandelate dehy 23.7 84 0.0018 29.2 3.3 31 161-191 127-157 (361)
343 cd08162 MPP_PhoA_N Synechococc 23.6 2E+02 0.0044 25.9 5.7 47 164-218 196-245 (313)
344 PRK14172 bifunctional 5,10-met 23.6 5.3E+02 0.012 23.0 8.8 32 231-262 135-168 (278)
345 PRK00414 gmhA phosphoheptose i 23.5 77 0.0017 26.4 2.8 27 160-186 123-149 (192)
346 PLN02423 phosphomannomutase 23.5 99 0.0021 26.7 3.6 30 159-189 24-53 (245)
347 COG1137 YhbG ABC-type (unclass 23.4 1.4E+02 0.0029 25.9 4.2 44 157-201 170-214 (243)
348 TIGR03127 RuMP_HxlB 6-phospho 23.3 78 0.0017 25.7 2.8 34 160-193 84-117 (179)
349 PF14097 SpoVAE: Stage V sporu 23.2 3.5E+02 0.0075 22.5 6.3 23 177-199 1-26 (180)
350 PF04056 Ssl1: Ssl1-like; Int 23.1 1.4E+02 0.003 25.1 4.3 48 148-197 105-153 (193)
351 KOG3128|consensus 23.1 2.4E+02 0.0051 25.1 5.7 42 160-201 139-180 (298)
352 PRK01045 ispH 4-hydroxy-3-meth 22.7 5.7E+02 0.012 23.1 8.6 41 221-261 79-122 (298)
353 TIGR02370 pyl_corrinoid methyl 22.7 1.1E+02 0.0024 25.6 3.6 54 145-199 133-188 (197)
354 cd03147 GATase1_Ydr533c_like T 22.5 4.1E+02 0.0089 22.8 7.2 22 162-183 25-46 (231)
355 PRK10425 DNase TatD; Provision 22.5 5.2E+02 0.011 22.5 8.0 36 160-195 13-51 (258)
356 PF13580 SIS_2: SIS domain; PD 22.3 84 0.0018 24.5 2.7 22 162-183 117-138 (138)
357 COG2452 Predicted site-specifi 22.2 1.2E+02 0.0025 25.6 3.5 35 229-263 55-97 (193)
358 PF00389 2-Hacid_dh: D-isomer 22.0 3.6E+02 0.0078 20.4 8.3 95 155-265 2-96 (133)
359 cd05006 SIS_GmhA Phosphoheptos 22.0 79 0.0017 25.6 2.6 27 161-187 114-140 (177)
360 PRK14177 bifunctional 5,10-met 22.0 4.9E+02 0.011 23.3 7.7 46 217-262 122-169 (284)
361 PF00107 ADH_zinc_N: Zinc-bind 21.8 3.4E+02 0.0073 20.1 7.7 83 166-261 5-91 (130)
362 PRK06381 threonine synthase; V 21.8 4.3E+02 0.0094 23.6 7.6 36 164-199 51-88 (319)
363 PRK09054 phosphogluconate dehy 21.8 88 0.0019 31.1 3.2 53 176-246 291-346 (603)
364 PRK13937 phosphoheptose isomer 21.7 86 0.0019 25.9 2.8 27 160-186 118-144 (188)
365 cd01653 GATase1 Type 1 glutami 21.7 2.7E+02 0.0058 18.9 6.8 34 153-186 3-36 (115)
366 PF13727 CoA_binding_3: CoA-bi 21.7 1E+02 0.0023 24.2 3.2 29 153-181 146-174 (175)
367 COG1171 IlvA Threonine dehydra 21.4 2.4E+02 0.0052 26.1 5.7 34 231-267 102-135 (347)
368 TIGR02329 propionate_PrpR prop 21.4 5.3E+02 0.011 25.3 8.4 33 230-263 123-155 (526)
369 TIGR00591 phr2 photolyase PhrI 21.2 2E+02 0.0043 27.3 5.5 38 162-199 78-115 (454)
370 PF00762 Ferrochelatase: Ferro 21.2 2.1E+02 0.0045 26.0 5.3 50 149-198 225-289 (316)
371 TIGR00696 wecB_tagA_cpsF bacte 21.2 4.7E+02 0.01 21.5 9.2 90 164-260 37-134 (177)
372 COG0548 ArgB Acetylglutamate k 21.2 3.7E+02 0.008 23.9 6.6 46 154-200 13-58 (265)
373 PRK14169 bifunctional 5,10-met 21.1 4.9E+02 0.011 23.3 7.5 32 231-262 133-166 (282)
374 PRK14190 bifunctional 5,10-met 21.1 4.5E+02 0.0097 23.6 7.3 47 215-261 119-167 (284)
375 PF09423 PhoD: PhoD-like phosp 21.0 81 0.0018 29.9 2.7 28 161-188 349-377 (453)
376 KOG3167|consensus 20.9 86 0.0019 24.9 2.3 29 158-186 58-86 (153)
377 PRK14174 bifunctional 5,10-met 20.9 5.1E+02 0.011 23.3 7.6 32 231-262 136-169 (295)
378 PF13541 ChlI: Subunit ChlI of 20.8 2.5E+02 0.0053 21.7 4.9 40 145-184 79-120 (121)
379 TIGR03821 AblA_like_1 lysine-2 20.8 3.3E+02 0.0072 24.7 6.6 84 149-251 205-299 (321)
380 COG3411 Ferredoxin [Energy pro 20.7 1.3E+02 0.0028 20.6 2.9 25 231-255 27-51 (64)
381 PLN02389 biotin synthase 20.6 5.9E+02 0.013 23.7 8.3 78 161-255 152-229 (379)
382 PRK14175 bifunctional 5,10-met 20.6 4.3E+02 0.0093 23.7 7.1 32 231-262 135-168 (286)
383 TIGR01127 ilvA_1Cterm threonin 20.6 3.8E+02 0.0082 24.7 7.1 71 164-266 35-108 (380)
384 PRK01222 N-(5'-phosphoribosyl) 20.5 3.3E+02 0.0071 23.0 6.1 52 148-199 24-79 (210)
385 cd03409 Chelatase_Class_II Cla 20.5 1.8E+02 0.0038 20.8 4.0 21 160-180 43-63 (101)
386 PRK14167 bifunctional 5,10-met 20.5 4.9E+02 0.011 23.5 7.4 40 223-262 126-167 (297)
387 TIGR00561 pntA NAD(P) transhyd 20.4 5.1E+02 0.011 25.3 8.0 90 163-255 17-111 (511)
388 PRK14938 Ser-tRNA(Thr) hydrola 20.4 2.2E+02 0.0049 26.7 5.3 49 151-199 277-326 (387)
389 PRK09424 pntA NAD(P) transhydr 20.4 5.1E+02 0.011 25.3 8.0 92 163-256 18-113 (509)
390 PRK00856 pyrB aspartate carbam 20.4 6.4E+02 0.014 22.7 8.4 39 161-199 87-125 (305)
391 KOG2448|consensus 20.4 1.9E+02 0.0041 27.0 4.7 70 158-246 282-354 (596)
392 COG0685 MetF 5,10-methylenetet 20.3 1.2E+02 0.0027 27.1 3.6 37 150-186 80-117 (291)
393 PRK10792 bifunctional 5,10-met 20.2 4.7E+02 0.01 23.5 7.2 47 216-262 121-169 (285)
394 PRK00035 hemH ferrochelatase; 20.1 2.3E+02 0.0049 25.7 5.4 34 160-193 246-284 (333)
395 KOG0952|consensus 20.1 1E+02 0.0022 32.8 3.3 40 159-199 172-215 (1230)
No 1
>KOG0202|consensus
Probab=100.00 E-value=4.8e-53 Score=404.25 Aligned_cols=248 Identities=46% Similarity=0.635 Sum_probs=221.6
Q ss_pred ccCCCCCCccccCChhHHHhhhhhhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhcccc
Q psy885 11 SNSNPPNHCVSFSGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHA 90 (270)
Q Consensus 11 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~ 90 (270)
+|.|.++......+..| +..|+.-+...|++++++||+|+||+|+|++.+..++. ++.+|+|||||.|+++|+.+
T Consensus 435 eKm~l~~~~~~~~s~~~-~~~c~~~~~~~~~~~~elpFssdrK~Msv~c~~~~~~~----~~~~fvKGA~E~Vl~rcs~~ 509 (972)
T KOG0202|consen 435 EKMGLPGTRSTNLSNEE-ASACNRVYSRLFKKIAELPFSSDRKSMSVKCSPAHGQS----GYKMFVKGAPESVLERCSTY 509 (972)
T ss_pred HHcCCCcchhhcccccc-cccchhHHHHhhhheeEeecccccceEEEEEecCCCCc----cceEEecCChHHHHHhhhcE
Confidence 45666666555566666 67888999999999999999999999999998776432 58999999999999999776
Q ss_pred cc-CC-eeeeccHHHHHh--------hhccceEEEeecccccceeCC-CCcccccccccchhhcccCCeEEEEEEeecCC
Q psy885 91 RI-GS-QKVSLKDFSANT--------RFENLRSLEPKSKVSAIVPWG-MKPEDMNLADSTKFASYEVNLTFVGVVGMLDP 159 (270)
Q Consensus 91 ~~-~~-~~~~l~~~~~~~--------~~~GlRvl~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~ 159 (270)
.. +| ...|+++..++. +++||||||+ |+++.+ ..+..+++.+..++..+|++|+|+|++++.||
T Consensus 510 ~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLal-----A~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DP 584 (972)
T KOG0202|consen 510 YGSDGQTKVPLTQASRETILANVYEMGSEGLRVLAL-----ASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDP 584 (972)
T ss_pred EccCCceeeeCcHHHHHHHHHHHHHHhhccceEEEE-----EccCCcccChhhhhhcccccccccccceEEEEEeeccCC
Confidence 65 33 558998876653 8999999999 888877 45556666677788889999999999999999
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChh
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPA 239 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~ 239 (270)
||++++++|+.|+++||+|+|||||+..||.+||+++||...+++..+.++||++|+.|++++++....++.+|+|++|.
T Consensus 585 PR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~ 664 (972)
T KOG0202|consen 585 PRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQ 664 (972)
T ss_pred CchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCch
Confidence 99999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 240 HKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 240 ~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
+|.+||++||++|.+|+|+|||+||++||
T Consensus 665 HK~kIVeaLq~~geivAMTGDGVNDApAL 693 (972)
T KOG0202|consen 665 HKLKIVEALQSRGEVVAMTGDGVNDAPAL 693 (972)
T ss_pred hHHHHHHHHHhcCCEEEecCCCccchhhh
Confidence 99999999999999999999999999997
No 2
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-51 Score=412.88 Aligned_cols=216 Identities=32% Similarity=0.440 Sum_probs=187.0
Q ss_pred hhhhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeecc--------HHH
Q psy885 32 VRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLK--------DFS 103 (270)
Q Consensus 32 ~~~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~--------~~~ 103 (270)
....++..|++++++||||+||||+|+++...+ ++++|+|||||+|+++|+.. +...+++ +..
T Consensus 432 ~~~~~~~~~~~~~~~PFdS~rKrMsviv~~~~~------~~~~~~KGApe~il~~~~~~---~~~~~~~~~~~~~~~~~~ 502 (917)
T COG0474 432 DLSGLEVEYPILAEIPFDSERKRMSVIVKTDEG------KYILFVKGAPEVILERCKSI---GELEPLTEEGLRTLEEAV 502 (917)
T ss_pred CHHHHhhhcceeEEecCCCCceEEEEEEEcCCC------cEEEEEcCChHHHHHHhccc---CcccccCHHHHHHHHHHH
Confidence 455677777889999999999999999985442 59999999999999999875 3333444 335
Q ss_pred HHhhhccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcC
Q psy885 104 ANTRFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 104 ~~~~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTG 183 (270)
++++++|||||++ |||.++..+.... . +.+|++|+|+|+++|+||||++++++|+.|++|||++|||||
T Consensus 503 ~~la~~glRvla~-----A~k~~~~~~~~~~-----~-~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTG 571 (917)
T COG0474 503 KELASEGLRVLAV-----AYKKLDRAEKDDE-----V-DEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITG 571 (917)
T ss_pred HHHHHHHHHHHHH-----HhccCCcccccch-----h-hhhhccceeehhhhccCCCCccHHHHHHHHHHCCCcEEEECC
Confidence 5569999999999 8886654322111 1 457999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHh
Q psy885 184 DNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGK 263 (270)
Q Consensus 184 D~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~N 263 (270)
||+.||.+||++||+...... .++++|.+++.++++++.+.+.++.||||+||+||.+||+.||+.|++|+|||||+|
T Consensus 572 D~~~TA~aIa~~~Gi~~~~~~--~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVamtGDGvN 649 (917)
T COG0474 572 DHVETAIAIAKECGIEAEAES--ALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTGDGVN 649 (917)
T ss_pred CCHHHHHHHHHHcCCCCCCCc--eeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEEEeCCCch
Confidence 999999999999998866432 569999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q psy885 264 TELRIF 269 (270)
Q Consensus 264 D~~ai~ 269 (270)
|++||.
T Consensus 650 DapALk 655 (917)
T COG0474 650 DAPALK 655 (917)
T ss_pred hHHHHH
Confidence 999984
No 3
>KOG0204|consensus
Probab=100.00 E-value=5.6e-48 Score=369.41 Aligned_cols=237 Identities=26% Similarity=0.309 Sum_probs=208.3
Q ss_pred CCccccCChhHHHhhhhhhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhcccccc-CCe
Q psy885 17 NHCVSFSGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI-GSQ 95 (270)
Q Consensus 17 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~-~~~ 95 (270)
.++.+.+...-+++...+..|.+.++++.+||+|.+|||+|+++.++. ..++|+|||+|.|+..|+.+.+ +|.
T Consensus 509 pTE~AlL~f~~~LG~~~~~~R~e~~v~kv~~FNS~kK~~gvvi~~~~~------~~y~~~KGAsEiVL~~C~~~~~~~g~ 582 (1034)
T KOG0204|consen 509 PTECALLGFGLKLGMDFQDVRPEEKVVKVYPFNSVKKRMGVVIKLPDG------GHYVHWKGASEIVLKSCEYYIDSNGE 582 (1034)
T ss_pred HHHHHHHHHHHHhCcchHhhcchhheeEEeccCcccceeeEEEEcCCC------CeEEEEcChHHHHHHhhhheECCCCC
Confidence 344455666666788899999999999999999999999999998763 3249999999999999999877 888
Q ss_pred eeeccHHHHHh--------hhccceEEEeecccccceeCCCCcc-cccccccchhhcccCCeEEEEEEeecCCCchhHHH
Q psy885 96 KVSLKDFSANT--------RFENLRSLEPKSKVSAIVPWGMKPE-DMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFD 166 (270)
Q Consensus 96 ~~~l~~~~~~~--------~~~GlRvl~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~ 166 (270)
..+++++.+.+ +.+|||++|+ ||+++..++. +.++++. +..+.+|+++|+++++||.||++++
T Consensus 583 ~~~~~e~~~~~~~~~Ie~mA~~~LRti~l-----Ay~df~~~~~~~~~~~~~---~~~~~~lt~laivGIkDPvRPgV~~ 654 (1034)
T KOG0204|consen 583 LVPFNEDDRKSFKDVIEPMASEGLRTICL-----AYRDFVAGPDEEPSWDNE---ELPEGGLTLLAIVGIKDPVRPGVPE 654 (1034)
T ss_pred EeeCCHHHHHHHHHHHHHHHHhhhheeeE-----EeeccccCCCCCCCcccc---ccCCCCeEEEEEeeccCCCCCCcHH
Confidence 88998775543 9999999999 9999776522 2333321 2347899999999999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHH
Q psy885 167 SIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVE 246 (270)
Q Consensus 167 ~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~ 246 (270)
+|+.|+.|||.|.|+||||..||.+||.+|||+.++.+ -.+++|.+|++++++++++++++.+|+||.+|.+|+-+|+
T Consensus 655 AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d--~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~DK~lLVk 732 (1034)
T KOG0204|consen 655 AVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGD--FLALEGKEFRELSQEERDKIWPKLRVLARSSPNDKHLLVK 732 (1034)
T ss_pred HHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCc--cceecchhhhhcCHHHHHhhhhhheeeecCCCchHHHHHH
Confidence 99999999999999999999999999999999988764 4799999999999999999999999999999999999999
Q ss_pred HHhhCCCEEEEECCcHhhhhhhc
Q psy885 247 FLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 247 ~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.|+++|++||++|||+||++||-
T Consensus 733 ~L~~~g~VVAVTGDGTNDaPALk 755 (1034)
T KOG0204|consen 733 GLIKQGEVVAVTGDGTNDAPALK 755 (1034)
T ss_pred HHHhcCcEEEEecCCCCCchhhh
Confidence 99999999999999999999973
No 4
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=3.8e-47 Score=389.63 Aligned_cols=217 Identities=23% Similarity=0.301 Sum_probs=183.1
Q ss_pred hcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEee
Q psy885 38 TKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPK 117 (270)
Q Consensus 38 ~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~ 117 (270)
..|++++++||+|++|||||+++..+++ ++++|+|||||.|+++|+.. ..+..+.+...+++++|+||||+
T Consensus 550 ~~~~il~~~pF~S~~krMsvvv~~~~~~-----~~~~~~KGApE~Il~~c~~~---~~p~~~~~~~~~~a~~G~RVLal- 620 (1054)
T TIGR01657 550 QELSIIRRFQFSSALQRMSVIVSTNDER-----SPDAFVKGAPETIQSLCSPE---TVPSDYQEVLKSYTREGYRVLAL- 620 (1054)
T ss_pred ceEEEEEEEeecCCCCEEEEEEEEcCCC-----eEEEEEECCHHHHHHHcCCc---CCChhHHHHHHHHHhcCCEEEEE-
Confidence 5789999999999999999999876532 57899999999999999852 12344667778889999999999
Q ss_pred cccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhC
Q psy885 118 SKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197 (270)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~g 197 (270)
|||+++..... .. ....++.+|++|+|+|+++|+||+|++++++|+.|+++||+++|+||||+.||.+||++||
T Consensus 621 ----A~k~l~~~~~~-~~-~~~~r~~~E~~L~flGli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~g 694 (1054)
T TIGR01657 621 ----AYKELPKLTLQ-KA-QDLSRDAVESNLTFLGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECG 694 (1054)
T ss_pred ----EEeecCccchh-hh-hhccHHHHhcCceEEEEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence 88877532100 00 1123466899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-------------------------------------------------ccceeeechhhcC---CCHHHHHH
Q psy885 198 VFTEEED-------------------------------------------------TTGKSYSGREFDD---LPLSEQKA 225 (270)
Q Consensus 198 i~~~~~~-------------------------------------------------~~~~~i~G~~~~~---l~~~~~~~ 225 (270)
|++++.. ...++++|+++.. +.++++.+
T Consensus 695 ii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~ 774 (1054)
T TIGR01657 695 IVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLR 774 (1054)
T ss_pred CCCCCceEEEeecccccCCCCceEEEEecCccccccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHH
Confidence 9865421 0136899999876 45678889
Q ss_pred hccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 226 AVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 226 ~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.+.++.||||++|+||.+||+.||+.|++|+|||||+||++||.
T Consensus 775 ~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GDG~ND~~ALK 818 (1054)
T TIGR01657 775 LLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGDGANDCGALK 818 (1054)
T ss_pred HHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Confidence 99999999999999999999999999999999999999999984
No 5
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=7.5e-46 Score=378.28 Aligned_cols=222 Identities=25% Similarity=0.381 Sum_probs=183.7
Q ss_pred hcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhcccccc-CC-eeeeccHH--------HHHhh
Q psy885 38 TKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI-GS-QKVSLKDF--------SANTR 107 (270)
Q Consensus 38 ~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~-~~-~~~~l~~~--------~~~~~ 107 (270)
..|++++++||||+||||+|+++.++++ .+++|+|||||.|+++|+.... ++ ...++++. ..+++
T Consensus 523 ~~~~~~~~~pFds~rK~msvv~~~~~~~-----~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a 597 (1053)
T TIGR01523 523 AQFEFIAEFPFDSEIKRMASIYEDNHGE-----TYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLA 597 (1053)
T ss_pred cccceEEEeccCCCCCeEEEEEEeCCCC-----EEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHH
Confidence 3588999999999999999999865321 4789999999999999987543 22 34566544 33459
Q ss_pred hccceEEEeecccccceeCCCCcccc-cccc-cchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCC
Q psy885 108 FENLRSLEPKSKVSAIVPWGMKPEDM-NLAD-STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDN 185 (270)
Q Consensus 108 ~~GlRvl~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~ 185 (270)
++|+||||+ |||+++..+... ...+ ...++.+|++|+|+|+++|+||+|++++++|+.|+++||+++|+|||+
T Consensus 598 ~~GlRvLa~-----A~r~l~~~~~~~~~~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~ 672 (1053)
T TIGR01523 598 AEGLRVLAF-----ASKSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDF 672 (1053)
T ss_pred hcCCeEEEE-----EEEECCchhccchhhhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence 999999999 777765421100 0000 012345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCC------CccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEEC
Q psy885 186 KATAEAICRRIGVFTEEE------DTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDS 259 (270)
Q Consensus 186 ~~ta~~iA~~~gi~~~~~------~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miG 259 (270)
+.||.+||+++||...+. .....+++|.+++.++++++++.+.++.||||++|+||.+||+.||++|++|+|+|
T Consensus 673 ~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~G 752 (1053)
T TIGR01523 673 PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTG 752 (1053)
T ss_pred HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeC
Confidence 999999999999985421 11247999999999999999999999999999999999999999999999999999
Q ss_pred CcHhhhhhhc
Q psy885 260 STGKTELRIF 269 (270)
Q Consensus 260 DG~ND~~ai~ 269 (270)
||+||++||.
T Consensus 753 DGvNDapaLk 762 (1053)
T TIGR01523 753 DGVNDSPSLK 762 (1053)
T ss_pred CCcchHHHHH
Confidence 9999999984
No 6
>KOG0208|consensus
Probab=100.00 E-value=1.3e-45 Score=357.31 Aligned_cols=215 Identities=20% Similarity=0.281 Sum_probs=186.3
Q ss_pred cceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeec
Q psy885 39 KWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKS 118 (270)
Q Consensus 39 ~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~ 118 (270)
.+-+++.+||+|..|||||||..++.+ +..+|+|||||.|.++|++... +..+.+.++.|+.+||||||+
T Consensus 600 ~~si~k~feF~S~LrRMSVIv~~~~e~-----~~~~ftKGaPE~I~~ic~p~tv---P~dy~evl~~Yt~~GfRVIAl-- 669 (1140)
T KOG0208|consen 600 EISIVKQFEFSSALRRMSVIVSTGGED-----KMMVFTKGAPESIAEICKPETV---PADYQEVLKEYTHQGFRVIAL-- 669 (1140)
T ss_pred ceEEEEecccchhhheEEEEEecCCCC-----ceEeeccCCHHHHHHhcCcccC---CccHHHHHHHHHhCCeEEEEE--
Confidence 789999999999999999999998765 7999999999999999987433 344667889999999999999
Q ss_pred ccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 119 KVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
|+|+++.. + ........++.+|++|.|+|++.|++++|++++.+|++|++|+||++|+||||..||+.+||+|||
T Consensus 670 ---A~K~L~~~-~-~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 670 ---ASKELETS-T-LQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred ---ecCccCcc-h-HHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccc
Confidence 77777644 1 111123356788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc---------------------------------------------------cceeeechhhcCC---CHHHHH
Q psy885 199 FTEEEDT---------------------------------------------------TGKSYSGREFDDL---PLSEQK 224 (270)
Q Consensus 199 ~~~~~~~---------------------------------------------------~~~~i~G~~~~~l---~~~~~~ 224 (270)
+.+.... ..++++|+.|.-+ ..+.+.
T Consensus 745 i~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~ 824 (1140)
T KOG0208|consen 745 IEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVP 824 (1140)
T ss_pred cCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEecCchhHHHHhhcHHHHH
Confidence 9765320 1357888888754 456778
Q ss_pred HhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 225 AAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 225 ~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
+++.++.|||||+|.||.++|+.||+.|+.|+|||||+||++||
T Consensus 825 ~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgAL 868 (1140)
T KOG0208|consen 825 KILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGAL 868 (1140)
T ss_pred HHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhh
Confidence 88999999999999999999999999999999999999999997
No 7
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=1.5e-44 Score=366.08 Aligned_cols=222 Identities=55% Similarity=0.794 Sum_probs=190.4
Q ss_pred hhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhcccccc-CCeeeeccHHH--------HHh
Q psy885 36 VETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI-GSQKVSLKDFS--------ANT 106 (270)
Q Consensus 36 ~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~-~~~~~~l~~~~--------~~~ 106 (270)
.++.|++++++||||+||||+|+++.++ ++++|+|||||.|+++|+.+.. ++...|+++.. .++
T Consensus 416 ~~~~~~~~~~~pF~s~rK~msviv~~~~-------~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~ 488 (917)
T TIGR01116 416 WNDKFKKLATLEFSRDRKSMSVLCKPST-------GNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEM 488 (917)
T ss_pred HHhhcceeeecccChhhCeEEEEEeeCC-------cEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998653 6899999999999999998655 36667777653 344
Q ss_pred hh-ccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCC
Q psy885 107 RF-ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDN 185 (270)
Q Consensus 107 ~~-~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~ 185 (270)
++ +|+|||++ |||.++.........+...++.+|++|+|+|+++++||+|++++++|+.|+++||+++|+|||+
T Consensus 489 a~~~GlRvl~~-----A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~ 563 (917)
T TIGR01116 489 GTTKALRCLAL-----AFKDIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDN 563 (917)
T ss_pred HhhcCCeEEEE-----EEEECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCC
Confidence 88 99999999 8887754321111111223456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhh
Q psy885 186 KATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTE 265 (270)
Q Consensus 186 ~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~ 265 (270)
..||.++|+++|+..++......+++|.++..+.++++.+...+..||||++|+||.++|+.+|+.|++|+|+|||+||+
T Consensus 564 ~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~ 643 (917)
T TIGR01116 564 KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDA 643 (917)
T ss_pred HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchH
Confidence 99999999999998765544456899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q psy885 266 LRIF 269 (270)
Q Consensus 266 ~ai~ 269 (270)
+||.
T Consensus 644 ~alk 647 (917)
T TIGR01116 644 PALK 647 (917)
T ss_pred HHHH
Confidence 9984
No 8
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=2.2e-44 Score=363.13 Aligned_cols=210 Identities=24% Similarity=0.427 Sum_probs=183.4
Q ss_pred hhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHH--------HHhh
Q psy885 36 VETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFS--------ANTR 107 (270)
Q Consensus 36 ~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~--------~~~~ 107 (270)
....|+.+.++||||.+|||+++++..++ .+++|+|||||.|+++|+.+..++...++++.. .+++
T Consensus 437 ~~~~~~~~~~~pFds~~k~msvvv~~~~~------~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a 510 (902)
T PRK10517 437 LASRWQKIDEIPFDFERRRMSVVVAENTE------HHQLICKGALEEILNVCSQVRHNGEIVPLDDIMLRRIKRVTDTLN 510 (902)
T ss_pred hhhcCceEEEeeeCCCcceEEEEEEECCC------eEEEEEeCchHHHHHhchhhhcCCCeecCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999876542 578999999999999999877677767776553 3448
Q ss_pred hccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 108 FENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 108 ~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
.+|+||+++ ||++++..+.... ...|++++|+|+++|.||+|++++++|+.|+++||+++|+||||+.
T Consensus 511 ~~G~rvlav-----A~k~~~~~~~~~~-------~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~ 578 (902)
T PRK10517 511 RQGLRVVAV-----ATKYLPAREGDYQ-------RADESDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSEL 578 (902)
T ss_pred hcCCEEEEE-----EEecCCccccccc-------cccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 899999999 8877654321110 1126799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 188 TAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 188 ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
||.+||+++||.. ..+++|.+++.|+++++.+.++++.||||++|+||.+||+.||++|++|+|+|||+||++|
T Consensus 579 tA~~IA~~lGI~~------~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaPA 652 (902)
T PRK10517 579 VAAKVCHEVGLDA------GEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPA 652 (902)
T ss_pred HHHHHHHHcCCCc------cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHHH
Confidence 9999999999952 2489999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy885 268 IF 269 (270)
Q Consensus 268 i~ 269 (270)
|.
T Consensus 653 Lk 654 (902)
T PRK10517 653 LR 654 (902)
T ss_pred HH
Confidence 84
No 9
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=2.8e-44 Score=365.18 Aligned_cols=213 Identities=28% Similarity=0.376 Sum_probs=183.3
Q ss_pred hhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccc-cCCeeeeccH-------HHHHh
Q psy885 35 DVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHAR-IGSQKVSLKD-------FSANT 106 (270)
Q Consensus 35 ~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~-~~~~~~~l~~-------~~~~~ 106 (270)
..+..|++++.+||+|.+|||+|+++.++. ++++|+|||||.|+++|+.+. .++...++++ ...++
T Consensus 465 ~~~~~~~~~~~~pF~s~~k~msvv~~~~~~------~~~~~~KGA~e~il~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~ 538 (941)
T TIGR01517 465 EVRAEEKVVKIYPFNSERKFMSVVVKHSGG------KVREFRKGASEIVLKPCRKRLDSNGEATPISDDKDRCADVIEPL 538 (941)
T ss_pred HHHhhchhccccccCCCCCeEEEEEEeCCC------cEEEEEECChHHHHHhhhHHhhcCCCcccCcHHHHHHHHHHHHH
Confidence 345678899999999999999999986542 589999999999999998753 3454445543 33456
Q ss_pred hhccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 107 RFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 107 ~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
+.+|+||+++ ||++++..+.. ..+..|++|+|+|+++|+||+|++++++|+.|+++||+++|+|||++
T Consensus 539 a~~G~Rvl~~-----A~~~~~~~~~~-------~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~ 606 (941)
T TIGR01517 539 ASDALRTICL-----AYRDFAPEEFP-------RKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNI 606 (941)
T ss_pred HhcCCEEEEE-----EEEecCccccc-------cccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEEEEECCCCh
Confidence 8999999999 77776543211 01223789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhh
Q psy885 187 ATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 187 ~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
.||.+||++|||.+++. .+++|.+++.++++++++.+.++.||||++|+||.+||+.||++|++|+|||||+||++
T Consensus 607 ~tA~~iA~~~GI~~~~~----~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~g~vVam~GDGvNDap 682 (941)
T TIGR01517 607 DTAKAIARNCGILTFGG----LAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGTNDAP 682 (941)
T ss_pred HHHHHHHHHcCCCCCCc----eEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCCchHH
Confidence 99999999999986543 58999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy885 267 RIF 269 (270)
Q Consensus 267 ai~ 269 (270)
||.
T Consensus 683 ALk 685 (941)
T TIGR01517 683 ALK 685 (941)
T ss_pred HHH
Confidence 984
No 10
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=6.1e-44 Score=360.26 Aligned_cols=212 Identities=24% Similarity=0.319 Sum_probs=182.9
Q ss_pred hhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHH--------HHHhh
Q psy885 36 VETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDF--------SANTR 107 (270)
Q Consensus 36 ~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~--------~~~~~ 107 (270)
.+..|+.+.++||++.+|+|+++++..++ ++++|+|||||.|+++|+....++...++++. ..+++
T Consensus 435 ~~~~~~~~~~~pF~s~~k~ms~v~~~~~~------~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a 508 (903)
T PRK15122 435 KPAGYRKVDELPFDFVRRRLSVVVEDAQG------QHLLICKGAVEEMLAVATHVRDGDTVRPLDEARRERLLALAEAYN 508 (903)
T ss_pred hhhcCceEEEeeeCCCcCEEEEEEEcCCC------cEEEEECCcHHHHHHhchhhhcCCCeecCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999876432 68899999999999999987666666677654 23458
Q ss_pred hccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 108 FENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 108 ~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
.+|+||+++ ||++++..+.... ..+..|++++|+|+++|.||+|++++++|+.|+++||+++|+||||+.
T Consensus 509 ~~G~rvlav-----A~k~~~~~~~~~~-----~~~~~e~~l~~lGli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~ 578 (903)
T PRK15122 509 ADGFRVLLV-----ATREIPGGESRAQ-----YSTADERDLVIRGFLTFLDPPKESAAPAIAALRENGVAVKVLTGDNPI 578 (903)
T ss_pred hCCCEEEEE-----EEeccCccccccc-----cccccccCcEEEEEEeccCccHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence 899999999 8877654321100 112247899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 188 TAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 188 ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
||.+||+++||.. ..+++|.+++.|+++++.+.+.++.||||++|+||.+||+.||++|++|+|+|||+||++|
T Consensus 579 tA~aIA~~lGI~~------~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGDGvNDaPA 652 (903)
T PRK15122 579 VTAKICREVGLEP------GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGINDAPA 652 (903)
T ss_pred HHHHHHHHcCCCC------CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECCCchhHHH
Confidence 9999999999953 2489999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy885 268 IF 269 (270)
Q Consensus 268 i~ 269 (270)
|.
T Consensus 653 Lk 654 (903)
T PRK15122 653 LR 654 (903)
T ss_pred HH
Confidence 84
No 11
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=4.7e-44 Score=364.92 Aligned_cols=228 Identities=26% Similarity=0.362 Sum_probs=186.9
Q ss_pred hhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHH--------HH
Q psy885 34 QDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFS--------AN 105 (270)
Q Consensus 34 ~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~--------~~ 105 (270)
...+..|++++.+||+|+||||+++++..+.+ ++ ++++|+|||||.|+++|+.+..++...++++.. .+
T Consensus 442 ~~~~~~~~~v~~~pF~s~rK~m~~v~~~~~~~--~~-~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~ 518 (997)
T TIGR01106 442 MEMRERNPKVVEIPFNSTNKYQLSIHENEDPR--DP-RHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLE 518 (997)
T ss_pred HHHHhhCceeEEeccCCCCceEEEEEeccCCC--Cc-eEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHH
Confidence 34678899999999999999999988643211 01 588999999999999999877777777776653 33
Q ss_pred hhhccceEEEeecccccceeCCCCccccccc-ccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCC
Q psy885 106 TRFENLRSLEPKSKVSAIVPWGMKPEDMNLA-DSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGD 184 (270)
Q Consensus 106 ~~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD 184 (270)
++++|+||||+ ||++++..+....+. +....+.+|++|+|+|+++++||||++++++|+.|+++||+++|+|||
T Consensus 519 ~a~~GlRvla~-----A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd 593 (997)
T TIGR01106 519 LGGLGERVLGF-----CHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGD 593 (997)
T ss_pred HHhcCCEEEEE-----EEeecCcccccccccccchhhhccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCC
Confidence 58999999999 777765421111000 001112348899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCC--------------------ccceeeechhhcCCCHHHHHHhccCc--eEEEecChhhHH
Q psy885 185 NKATAEAICRRIGVFTEEED--------------------TTGKSYSGREFDDLPLSEQKAAVARA--RLFSRVEPAHKS 242 (270)
Q Consensus 185 ~~~ta~~iA~~~gi~~~~~~--------------------~~~~~i~G~~~~~l~~~~~~~~~~~~--~v~ar~tP~~K~ 242 (270)
+..||.++|+++||..++.. ....+++|.+++.++++++++.+.++ .||||++|+||+
T Consensus 594 ~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~ 673 (997)
T TIGR01106 594 HPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEILKYHTEIVFARTSPQQKL 673 (997)
T ss_pred CHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhCCHHHHHHHHHhcCCEEEEECCHHHHH
Confidence 99999999999999865321 11369999999999999999998765 499999999999
Q ss_pred HHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 243 KIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 243 ~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
+||+.||+.|++|+|+|||+||++||.
T Consensus 674 ~IV~~lq~~g~vv~~~GDG~ND~paLk 700 (997)
T TIGR01106 674 IIVEGCQRQGAIVAVTGDGVNDSPALK 700 (997)
T ss_pred HHHHHHHHCCCEEEEECCCcccHHHHh
Confidence 999999999999999999999999984
No 12
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=2.5e-44 Score=368.92 Aligned_cols=224 Identities=21% Similarity=0.198 Sum_probs=179.6
Q ss_pred hhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEE
Q psy885 35 DVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSL 114 (270)
Q Consensus 35 ~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl 114 (270)
..+..|++++++||+|+|||||||++.+++ ++++|+|||||+|+++|+.....+....+.+...+++.+|+|||
T Consensus 598 ~~~~~~~il~~~pF~S~rKrMSvIv~~~~~------~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~l~~~a~~GlRtL 671 (1178)
T PLN03190 598 GERQRFNVLGLHEFDSDRKRMSVILGCPDK------TVKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSLGLRTL 671 (1178)
T ss_pred cceecceeEEEecccccccEEEEEEEcCCC------cEEEEEecCcHHHHHhhcccccchhHHHHHHHHHHHHhcCCceE
Confidence 356789999999999999999999987642 68999999999999999864333333334566778899999999
Q ss_pred EeecccccceeCCCCccc-----c-----ccccc-----chhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEE
Q psy885 115 EPKSKVSAIVPWGMKPED-----M-----NLADS-----TKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVI 179 (270)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~-----~-----~~~~~-----~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~ 179 (270)
++ |||+++..+.. . ...+. ...+.+|++|+|+|+++++||||++++++|+.|+++||++|
T Consensus 672 ~l-----A~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~ 746 (1178)
T PLN03190 672 VV-----GMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVW 746 (1178)
T ss_pred EE-----EEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEE
Confidence 99 66666432110 0 00010 12246799999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHhCCCCCCCC---------------------------------------------ccceeeechh
Q psy885 180 VITGDNKATAEAICRRIGVFTEEED---------------------------------------------TTGKSYSGRE 214 (270)
Q Consensus 180 mlTGD~~~ta~~iA~~~gi~~~~~~---------------------------------------------~~~~~i~G~~ 214 (270)
|+|||+.+||.+||++|||++++.. ...++++|.+
T Consensus 747 mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVIdG~~ 826 (1178)
T PLN03190 747 VLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTS 826 (1178)
T ss_pred EECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEEEEEcHH
Confidence 9999999999999999999866421 0136899999
Q ss_pred hcCCCH----HHHHHhccC--ceEEEecChhhHHHHHHHHhhC-CCEEEEECCcHhhhhhhc
Q psy885 215 FDDLPL----SEQKAAVAR--ARLFSRVEPAHKSKIVEFLQGM-NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 215 ~~~l~~----~~~~~~~~~--~~v~ar~tP~~K~~iV~~lq~~-g~~V~miGDG~ND~~ai~ 269 (270)
+..+.+ +++.++..+ ++||||+||.||++||+.+|+. +++|+|||||+||++||.
T Consensus 827 L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq 888 (1178)
T PLN03190 827 LVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQ 888 (1178)
T ss_pred HHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHH
Confidence 988765 345555554 4589999999999999999997 589999999999999984
No 13
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=3.1e-43 Score=354.41 Aligned_cols=210 Identities=26% Similarity=0.436 Sum_probs=182.6
Q ss_pred hhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHH--------HHhh
Q psy885 36 VETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFS--------ANTR 107 (270)
Q Consensus 36 ~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~--------~~~~ 107 (270)
.+..|+.++.+||||.+|+|+++++..+. .+++|+|||||.|+++|+.+..++...+++++. .+++
T Consensus 402 ~~~~~~~~~~~pF~s~~k~ms~~v~~~~~------~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a 475 (867)
T TIGR01524 402 TASRWKKVDEIPFDFDRRRLSVVVENRAE------VTRLICKGAVEEMLTVCTHKRFGGAVVTLSESEKSELQDMTAEMN 475 (867)
T ss_pred HhhcCceEEEeccCCCcCEEEEEEEcCCc------eEEEEEeCcHHHHHHhchhhhcCCceecCCHHHHHHHHHHHHHHH
Confidence 45688999999999999999999876542 478999999999999999876676666665442 3348
Q ss_pred hccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 108 FENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 108 ~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
.+|+||+++ ||++++..+... . +..+++|+|+|+++|+||+|++++++|+.|+++||+++|+|||+..
T Consensus 476 ~~G~rvlav-----A~~~~~~~~~~~--~-----~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~ 543 (867)
T TIGR01524 476 RQGIRVIAV-----ATKTLKVGEADF--T-----KTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEI 543 (867)
T ss_pred hcCCEEEEE-----EEeccCcccccc--c-----ccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 899999999 887765432211 0 1136789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 188 TAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 188 ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
||.+||+++||... .+++|.+++.++++++.+.++++.||||++|+||.+||+.||++|++|+|+|||+||++|
T Consensus 544 tA~aIA~~lGI~~~------~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapA 617 (867)
T TIGR01524 544 VTARICQEVGIDAN------DFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPA 617 (867)
T ss_pred HHHHHHHHcCCCCC------CeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHHH
Confidence 99999999999632 489999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy885 268 IF 269 (270)
Q Consensus 268 i~ 269 (270)
|.
T Consensus 618 Lk 619 (867)
T TIGR01524 618 LR 619 (867)
T ss_pred HH
Confidence 84
No 14
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=2.7e-44 Score=369.12 Aligned_cols=220 Identities=23% Similarity=0.252 Sum_probs=175.5
Q ss_pred hcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEee
Q psy885 38 TKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPK 117 (270)
Q Consensus 38 ~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~ 117 (270)
..|++++++||+|+||||||+++.+++ ++++|+|||||+|+++|+.. .+.....+.+...+++.+|+|||++
T Consensus 507 ~~~~il~~~pF~s~rKrmSviv~~~~~------~~~l~~KGA~e~il~~~~~~-~~~~~~~~~~~~~~~a~~GlRtL~~- 578 (1057)
T TIGR01652 507 KEYEILNVLEFNSDRKRMSVIVRNPDG------RIKLLCKGADTVIFKRLSSG-GNQVNEETKEHLENYASEGLRTLCI- 578 (1057)
T ss_pred EEEEEEEecccCCCCCeEEEEEEeCCC------eEEEEEeCcHHHHHHHhhcc-chhHHHHHHHHHHHHHHcCCcEEEE-
Confidence 579999999999999999999997652 68999999999999999752 1111223455567779999999999
Q ss_pred cccccceeCCCCccc----------ccccc-----cchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEc
Q psy885 118 SKVSAIVPWGMKPED----------MNLAD-----STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVIT 182 (270)
Q Consensus 118 ~~~~a~~~~~~~~~~----------~~~~~-----~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlT 182 (270)
|||+++..+.. ....+ ...++.+|++|+|+|+++++||||++++++|+.|++|||++||+|
T Consensus 579 ----A~k~l~~~e~~~~~~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlT 654 (1057)
T TIGR01652 579 ----AYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLT 654 (1057)
T ss_pred ----EEEECCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEc
Confidence 77666532110 00001 011346799999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCc-------------------------------------cceeeechhhcCCCHHH---
Q psy885 183 GDNKATAEAICRRIGVFTEEEDT-------------------------------------TGKSYSGREFDDLPLSE--- 222 (270)
Q Consensus 183 GD~~~ta~~iA~~~gi~~~~~~~-------------------------------------~~~~i~G~~~~~l~~~~--- 222 (270)
||+.+||.+||++|||++++... ..++++|++++.+.+++
T Consensus 655 GD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~ 734 (1057)
T TIGR01652 655 GDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEK 734 (1057)
T ss_pred CCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHH
Confidence 99999999999999999765321 12589999988655433
Q ss_pred -HHHhccC--ceEEEecChhhHHHHHHHHhhC-CCEEEEECCcHhhhhhhc
Q psy885 223 -QKAAVAR--ARLFSRVEPAHKSKIVEFLQGM-NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 223 -~~~~~~~--~~v~ar~tP~~K~~iV~~lq~~-g~~V~miGDG~ND~~ai~ 269 (270)
+.+++.. ..||||++|+||.+||+.+|+. |++|+|||||+||++||.
T Consensus 735 ~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk 785 (1057)
T TIGR01652 735 EFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQ 785 (1057)
T ss_pred HHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHh
Confidence 3445444 4699999999999999999998 999999999999999984
No 15
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=2.4e-40 Score=334.70 Aligned_cols=202 Identities=31% Similarity=0.469 Sum_probs=179.3
Q ss_pred hhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhcccccc-CCeeeeccHHH--------HHh
Q psy885 36 VETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI-GSQKVSLKDFS--------ANT 106 (270)
Q Consensus 36 ~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~-~~~~~~l~~~~--------~~~ 106 (270)
.+..|+.++++||+|.+|||+++++...++ ++++|+|||||.|+.+|+.+.. ++...++++.. .++
T Consensus 424 ~~~~~~~~~~~pF~s~~k~m~v~~~~~~~~-----~~~~~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~ 498 (884)
T TIGR01522 424 LRETYIRVAEVPFSSERKWMAVKCVHRQDR-----SEMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEM 498 (884)
T ss_pred HHhhCcEEeEeCCCCCCCeEEEEEEEcCCC-----eEEEEEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHH
Confidence 455789999999999999999998764322 6899999999999999987654 45556665432 345
Q ss_pred hhccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 107 RFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 107 ~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
+.+|+||+++ ||+++ +.+|+|+|+++|+||+|++++++|+.|+++||+++|+|||+.
T Consensus 499 a~~G~rvl~~-----A~~~~------------------~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~ 555 (884)
T TIGR01522 499 ASAGLRVIAF-----ASGPE------------------KGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQ 555 (884)
T ss_pred HhcCCEEEEE-----EEEcC------------------CCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCH
Confidence 8899999999 88764 357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhh
Q psy885 187 ATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 187 ~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
.||.++|+++||..... .+++|.+++.+.++++++.+.++.||||++|+||..+|+.||+.|++|+|||||+||++
T Consensus 556 ~tA~~ia~~~Gi~~~~~----~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~p 631 (884)
T TIGR01522 556 ETAVSIARRLGMPSKTS----QSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAP 631 (884)
T ss_pred HHHHHHHHHcCCCCCCC----ceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHH
Confidence 99999999999986432 47899999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy885 267 RIF 269 (270)
Q Consensus 267 ai~ 269 (270)
||.
T Consensus 632 Al~ 634 (884)
T TIGR01522 632 ALK 634 (884)
T ss_pred HHH
Confidence 984
No 16
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=4.4e-40 Score=327.59 Aligned_cols=203 Identities=26% Similarity=0.345 Sum_probs=171.0
Q ss_pred hhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEE
Q psy885 36 VETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLE 115 (270)
Q Consensus 36 ~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~ 115 (270)
.+..|+++..+||++.+|+|+++++....+ +.++|+|||||.|+++|+... .....+.+...+++.+|+|+++
T Consensus 349 ~~~~~~~~~~~pf~~~~k~~~~~v~~~~~g-----~~~~~~kGa~e~il~~c~~~~--~~~~~~~~~~~~~~~~G~rvl~ 421 (755)
T TIGR01647 349 ARDGYKVLEFVPFDPVDKRTEATVEDPETG-----KRFKVTKGAPQVILDLCDNKK--EIEEKVEEKVDELASRGYRALG 421 (755)
T ss_pred HHhcCceEEEeccCCCCCeEEEEEEeCCCc-----eEEEEEeCChHHHHHhcCCcH--HHHHHHHHHHHHHHhCCCEEEE
Confidence 356789999999999999999998765322 578899999999999997531 1112234455667899999999
Q ss_pred eecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q psy885 116 PKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR 195 (270)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~ 195 (270)
+ ||++. +++|+|+|+++|.||+|++++++|+.|+++||+++|+|||++.||.+||++
T Consensus 422 v-----A~~~~------------------e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~ 478 (755)
T TIGR01647 422 V-----ARTDE------------------EGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARR 478 (755)
T ss_pred E-----EEEcC------------------CCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH
Confidence 9 87621 568999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 196 IGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 196 ~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
+||.... .....+.+|.+++.++++++++.+.++.+|||++|+||.+||+.||++|++|+|+|||+||++||.
T Consensus 479 lGI~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~ 551 (755)
T TIGR01647 479 LGLGTNI-YTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALK 551 (755)
T ss_pred cCCCCCC-cCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHH
Confidence 9997421 111224556666788999999999999999999999999999999999999999999999999984
No 17
>KOG0206|consensus
Probab=100.00 E-value=2.7e-41 Score=338.92 Aligned_cols=244 Identities=20% Similarity=0.244 Sum_probs=189.3
Q ss_pred CccccCChhHHHhhh--------------------hhhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEe
Q psy885 18 HCVSFSGRREQAIAV--------------------RQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVK 77 (270)
Q Consensus 18 ~~~~~~~~~e~~~~~--------------------~~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~K 77 (270)
....+.+|+|.+... .-...+.|++++.++|+|.||||||||+.+.+ +.++|||
T Consensus 487 ~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~RKRMSVIVR~p~g------~i~LycK 560 (1151)
T KOG0206|consen 487 LSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNSTRKRMSVIVRDPDG------RILLYCK 560 (1151)
T ss_pred eeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEeccccccceeEEEEEcCCC------cEEEEEc
Confidence 345667788777655 11135699999999999999999999999875 7999999
Q ss_pred CChHHHHHhccccccCCeee-eccHHHHHhhhccceEEEeecccccceeCCCCcc-----cccccc-----cchhhcccC
Q psy885 78 GAPEGVLERCTHARIGSQKV-SLKDFSANTRFENLRSLEPKSKVSAIVPWGMKPE-----DMNLAD-----STKFASYEV 146 (270)
Q Consensus 78 GApe~Il~~c~~~~~~~~~~-~l~~~~~~~~~~GlRvl~~~~~~~a~~~~~~~~~-----~~~~~~-----~~~~~~ie~ 146 (270)
||+.+|+++|+.. ..... .-...+.+++.+|||+||+|+|.++..++..|.. .....+ ...++.+|+
T Consensus 561 GADsvI~erL~~~--~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk 638 (1151)
T KOG0206|consen 561 GADSVIFERLSKN--GEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSLTDREELLDEVAEEIEK 638 (1151)
T ss_pred CcchhhHhhhhhc--chHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHh
Confidence 9999999999851 11111 1224567789999999999444443333333311 111111 123567899
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCC----------------------
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEED---------------------- 204 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~---------------------- 204 (270)
||+++|..+++|+|+++++++|+.|++||||+||+|||..+||++||.+|+++.++..
T Consensus 639 ~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~ 718 (1151)
T KOG0206|consen 639 DLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEELSSLDATAALK 718 (1151)
T ss_pred cchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChhhhcchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999976422
Q ss_pred ---------------------ccceeeechhhcCCCHHHHH-H-----hccCceEEEecChhhHHHHHHHHhh-CCCEEE
Q psy885 205 ---------------------TTGKSYSGREFDDLPLSEQK-A-----AVARARLFSRVEPAHKSKIVEFLQG-MNEISA 256 (270)
Q Consensus 205 ---------------------~~~~~i~G~~~~~l~~~~~~-~-----~~~~~~v~ar~tP~~K~~iV~~lq~-~g~~V~ 256 (270)
..+++|+|+.+....+.+.. . ..+++++|||+||.||+.+|+..++ .+.+++
T Consensus 719 ~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TL 798 (1151)
T KOG0206|consen 719 ETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVKLVKKGLKAVTL 798 (1151)
T ss_pred HHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHHHHHHhcCCceEE
Confidence 13578999988765444222 2 2367899999999999999999974 589999
Q ss_pred EECCcHhhhhhhc
Q psy885 257 MDSSTGKTELRIF 269 (270)
Q Consensus 257 miGDG~ND~~ai~ 269 (270)
+||||+||+.||.
T Consensus 799 AIGDGANDVsMIQ 811 (1151)
T KOG0206|consen 799 AIGDGANDVSMIQ 811 (1151)
T ss_pred EeeCCCccchhee
Confidence 9999999999984
No 18
>KOG0203|consensus
Probab=100.00 E-value=2.1e-39 Score=310.37 Aligned_cols=237 Identities=26% Similarity=0.365 Sum_probs=195.8
Q ss_pred CChhHHHhhhhhhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHH
Q psy885 23 SGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDF 102 (270)
Q Consensus 23 ~~~~e~~~~~~~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~ 102 (270)
+..+|-..-....+|++++++.++||+|.+|+...+.+..+.+ +.++.+.+|||||.|+++|+.+..+|+..|+++.
T Consensus 453 lk~~e~~~~~~~~~R~~~~kv~eipfNSt~Kyqlsih~~~d~~---~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~ 529 (1019)
T KOG0203|consen 453 LKFIELILGSVMELRERNPKVAEIPFNSTNKYQLSIHETEDPS---DPRFLLVMKGAPERILDRCSTILINGEEKPLDEK 529 (1019)
T ss_pred HHHHHHhcchHHHHHHhhHHhhcCCcccccceEEEEEecCCCC---CccceeeecCChHHHHhhccceeecCCCCCcCHH
Confidence 3344444444589999999999999999999999998776532 2278899999999999999999999999999887
Q ss_pred HHHh--------hhccceEEEeecccccceeCCCCccccccc---ccchhhcccCCeEEEEEEeecCCCchhHHHHHHHH
Q psy885 103 SANT--------RFENLRSLEPKSKVSAIVPWGMKPEDMNLA---DSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARC 171 (270)
Q Consensus 103 ~~~~--------~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l 171 (270)
.++. ...|-||++| +++.++.......+. +..++ --.+|.|+|++++-||||..+++++..|
T Consensus 530 ~~~~f~~ay~~lg~~GerVlgF-----~~~~l~~~~~p~~~~f~~d~~n~--p~~nl~FlGl~s~idPPR~~vP~Av~~C 602 (1019)
T KOG0203|consen 530 LKEAFQEAYLELGGLGERVLGF-----CDLELPDEKFPRGFQFDTDDVNF--PTDNLRFLGLISMIDPPRAAVPDAVGKC 602 (1019)
T ss_pred HHHHHHHHHHHhhhcchHHHHH-----HHHhcchhcCCCceEeecCCCCC--cchhccccchhhccCCCcccCchhhhhh
Confidence 6543 7889999999 555555321111111 11111 1468999999999999999999999999
Q ss_pred HhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCc--------------------cceeeechhhcCCCHHHHHHhccC--
Q psy885 172 RAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT--------------------TGKSYSGREFDDLPLSEQKAAVAR-- 229 (270)
Q Consensus 172 ~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~--------------------~~~~i~G~~~~~l~~~~~~~~~~~-- 229 (270)
+.|||+|+|+|||++.||.++|++.||......+ ...|++|.++..++.+++++++.+
T Consensus 603 rsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~~~~~qld~il~nh~ 682 (1019)
T KOG0203|consen 603 RSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPDMSSEQLDELLQNHQ 682 (1019)
T ss_pred hhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccccCHHHHHHHHHhCC
Confidence 9999999999999999999999999988754431 235899999999999999999864
Q ss_pred ceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 230 ARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 230 ~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
-.||||.||+||+.||+.+|++|.+|+++|||+||++||.
T Consensus 683 eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALK 722 (1019)
T KOG0203|consen 683 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALK 722 (1019)
T ss_pred ceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhc
Confidence 4799999999999999999999999999999999999984
No 19
>KOG0209|consensus
Probab=100.00 E-value=3.6e-39 Score=307.59 Aligned_cols=216 Identities=22% Similarity=0.255 Sum_probs=181.2
Q ss_pred cceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeec
Q psy885 39 KWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKS 118 (270)
Q Consensus 39 ~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~ 118 (270)
..+|.+++.|+|..|||||++...+.++. .++++.+|||||+|.++.... +..+++.+.+++++|.||||+
T Consensus 569 ~lkI~~ryhFsSaLKRmsvva~~~~~g~s--~k~~~aVKGAPEvi~~ml~dv-----P~dY~~iYk~ytR~GsRVLAL-- 639 (1160)
T KOG0209|consen 569 KLKIIQRYHFSSALKRMSVVASHQGPGSS--EKYFVAVKGAPEVIQEMLRDV-----PKDYDEIYKRYTRQGSRVLAL-- 639 (1160)
T ss_pred ccchhhhhhHHHHHHHHHhhhhcccCCCc--eEEEEEecCCHHHHHHHHHhC-----chhHHHHHHHHhhccceEEEE--
Confidence 46778999999999999999877654321 279999999999999988654 444777788999999999999
Q ss_pred ccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 119 KVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
+||+++.-... -...-.++.+|++|+|.|++.|..|+|++++.+|+.|++++++++||||||+.||.++|+++||
T Consensus 640 ---g~K~l~~~~~~--q~rd~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~i 714 (1160)
T KOG0209|consen 640 ---GYKPLGDMMVS--QVRDLKREDVESDLTFAGFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGI 714 (1160)
T ss_pred ---ecccccccchh--hhhhhhhhhhhhcceeeeeEEEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeee
Confidence 77776521111 0112356788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-------------------------------------ccceeeechhhcCCCHH-HHHHhccCceEEEecChhh
Q psy885 199 FTEEED-------------------------------------TTGKSYSGREFDDLPLS-EQKAAVARARLFSRVEPAH 240 (270)
Q Consensus 199 ~~~~~~-------------------------------------~~~~~i~G~~~~~l~~~-~~~~~~~~~~v~ar~tP~~ 240 (270)
...... ...++++|..++.+... .+.+++.++.||||+.|.|
T Consensus 715 v~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~Q 794 (1160)
T KOG0209|consen 715 VEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQ 794 (1160)
T ss_pred eccCceeeccCccCCCceeeEecCCCceeecCCCCccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhh
Confidence 865211 12457889999877543 5677888999999999999
Q ss_pred HHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 241 KSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 241 K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
|..|+..|++.|++++|||||+||++||
T Consensus 795 KE~ii~tlK~~Gy~TLMCGDGTNDVGAL 822 (1160)
T KOG0209|consen 795 KEFIITTLKKLGYVTLMCGDGTNDVGAL 822 (1160)
T ss_pred HHHHHHHHHhcCeEEEEecCCCcchhhh
Confidence 9999999999999999999999999997
No 20
>KOG0210|consensus
Probab=100.00 E-value=4.9e-38 Score=295.44 Aligned_cols=225 Identities=20% Similarity=0.243 Sum_probs=182.1
Q ss_pred hhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceE
Q psy885 34 QDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRS 113 (270)
Q Consensus 34 ~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRv 113 (270)
......|+++..|||+|+.|||.+||+.+.++ ++..|.|||+-+|-..-... .+ ++++.-+++++|+|+
T Consensus 533 ~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~-----evtfylKGAD~VMs~iVq~N----dW--leEE~gNMAREGLRt 601 (1051)
T KOG0210|consen 533 LDDELNYQILQVFPFTSETKRMGIIVRDETTE-----EVTFYLKGADVVMSGIVQYN----DW--LEEECGNMAREGLRT 601 (1051)
T ss_pred CCcceeEEEEEEeccccccceeeEEEecCCCc-----eEEEEEecchHHHhcccccc----hh--hhhhhhhhhhhcceE
Confidence 34455899999999999999999999998655 89999999999987755431 11 455566779999999
Q ss_pred EEeecccccceeCCCC-----ccccccccc-----chh-hcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEc
Q psy885 114 LEPKSKVSAIVPWGMK-----PEDMNLADS-----TKF-ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVIT 182 (270)
Q Consensus 114 l~~~~~~~a~~~~~~~-----~~~~~~~~~-----~~~-~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlT 182 (270)
|.+|+|.++.++++.. .+.++..+. +.- ..+|.+|.++|+.+.+|.++++++.+++.||+|||++||+|
T Consensus 602 LVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dVk~tLElLRNAgikiWMLT 681 (1051)
T KOG0210|consen 602 LVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDDVKPTLELLRNAGIKIWMLT 681 (1051)
T ss_pred EEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhhhHhHHHHHhhcCcEEEEEc
Confidence 9999988876665421 112222221 111 25789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCc------------------------cceeeechhhcCC---CHHHHHHhcc--CceEE
Q psy885 183 GDNKATAEAICRRIGVFTEEEDT------------------------TGKSYSGREFDDL---PLSEQKAAVA--RARLF 233 (270)
Q Consensus 183 GD~~~ta~~iA~~~gi~~~~~~~------------------------~~~~i~G~~~~~l---~~~~~~~~~~--~~~v~ 233 (270)
||..+||..||+..+++..++.+ .+++|+|+.+.-. -++|+-++.+ .++|+
T Consensus 682 GDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~ 761 (1051)
T KOG0210|consen 682 GDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVC 761 (1051)
T ss_pred CcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEE
Confidence 99999999999999999877652 3678999887632 3456666554 46899
Q ss_pred EecChhhHHHHHHHHhhC-CCEEEEECCcHhhhhhhc
Q psy885 234 SRVEPAHKSKIVEFLQGM-NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~-g~~V~miGDG~ND~~ai~ 269 (270)
||+||.||+++++.+|+. |..|++||||-||+.||-
T Consensus 762 CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq 798 (1051)
T KOG0210|consen 762 CRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQ 798 (1051)
T ss_pred EecChhHHHHHHHHHHHhhCceEEEEcCCCccchhee
Confidence 999999999999999975 899999999999999983
No 21
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=3.2e-33 Score=272.54 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=133.3
Q ss_pred eEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeeccccc
Q psy885 43 EFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSKVSA 122 (270)
Q Consensus 43 ~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~~~~a 122 (270)
...+||++.+|+|++.++ + + .+.||||+.++++|+.. ....+..+.....+++++|+|++++ +
T Consensus 365 ~~~~pF~~~~k~~gv~~~--g-------~--~i~kGa~~~il~~~~~~-g~~~~~~~~~~~~~~a~~G~~~l~v-----~ 427 (673)
T PRK14010 365 GEYIPFTAETRMSGVKFT--T-------R--EVYKGAPNSMVKRVKEA-GGHIPVDLDALVKGVSKKGGTPLVV-----L 427 (673)
T ss_pred cceeccccccceeEEEEC--C-------E--EEEECCHHHHHHHhhhc-CCCCchHHHHHHHHHHhCCCeEEEE-----E
Confidence 345899999999999753 1 2 45599999999999752 1111122344455668899999988 3
Q ss_pred ceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCC
Q psy885 123 IVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEE 202 (270)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~ 202 (270)
.+++++|+++|.||+|++++++|+.||++||+++|+||||+.||.+||+++||.
T Consensus 428 -----------------------~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~--- 481 (673)
T PRK14010 428 -----------------------EDNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD--- 481 (673)
T ss_pred -----------------------ECCEEEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc---
Confidence 256899999999999999999999999999999999999999999999999997
Q ss_pred CCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 203 EDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 203 ~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.+|||++|+||.++|+.+|++|++|+|+|||+||++||.
T Consensus 482 ----------------------------~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa 520 (673)
T PRK14010 482 ----------------------------RFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALA 520 (673)
T ss_pred ----------------------------eEEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHHHHH
Confidence 699999999999999999999999999999999999983
No 22
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=3.1e-33 Score=272.90 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=136.2
Q ss_pred ceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCe-eeeccHHHHHhhhccceEEEeec
Q psy885 40 WKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQ-KVSLKDFSANTRFENLRSLEPKS 118 (270)
Q Consensus 40 ~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~-~~~l~~~~~~~~~~GlRvl~~~~ 118 (270)
|+....+||++.+|+|++.+. ...|+|||||.|++.|... ++. +..+.+...+++++|+|++++
T Consensus 366 ~~~~~~~pF~s~~~~~gv~~~-----------g~~~~kGa~e~il~~~~~~--g~~~~~~~~~~~~~~a~~G~~~l~v-- 430 (679)
T PRK01122 366 SLHATFVPFSAQTRMSGVDLD-----------GREIRKGAVDAIRRYVESN--GGHFPAELDAAVDEVARKGGTPLVV-- 430 (679)
T ss_pred cccceeEeecCcCceEEEEEC-----------CEEEEECCHHHHHHHHHhc--CCcChHHHHHHHHHHHhCCCcEEEE--
Confidence 456778999999998888642 2478999999999999642 111 122344455668999999999
Q ss_pred ccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 119 KVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
|+ +++++|+++++||+|++++++|+.||++||+++|+||||+.||.+||+++||
T Consensus 431 ---a~-----------------------~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI 484 (679)
T PRK01122 431 ---AE-----------------------DNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV 484 (679)
T ss_pred ---EE-----------------------CCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 52 4679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 199 FTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 199 ~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
. .+|||++|+||.++|+.+|++|++|+|+|||+||++||-
T Consensus 485 d-------------------------------~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa 524 (679)
T PRK01122 485 D-------------------------------DFLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALA 524 (679)
T ss_pred c-------------------------------EEEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHH
Confidence 6 799999999999999999999999999999999999983
No 23
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.96 E-value=1.8e-29 Score=246.13 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=135.2
Q ss_pred eEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeeccc
Q psy885 41 KKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSKV 120 (270)
Q Consensus 41 ~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~~~ 120 (270)
+.....||++.+++|++.+. +...|+|||||.|++.|... ....+..+.+...+++.+|+|++++
T Consensus 367 ~~~~~~pf~~~~~~sg~~~~----------~g~~~~kGa~e~i~~~~~~~-g~~~~~~~~~~~~~~a~~G~r~l~v---- 431 (675)
T TIGR01497 367 LHATFVEFTAQTRMSGINLD----------NGRMIRKGAVDAIKRHVEAN-GGHIPTDLDQAVDQVARQGGTPLVV---- 431 (675)
T ss_pred ccceEEEEcCCCcEEEEEEe----------CCeEEEECCHHHHHHHHHhc-CCCCcHHHHHHHHHHHhCCCeEEEE----
Confidence 45678999999888776543 12468999999999998631 1111223445556678999999999
Q ss_pred ccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 121 SAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
|+ +.+++|++++.||+||+++++|+.|+++||+++|+|||+..||.++|+++||.
T Consensus 432 -a~-----------------------~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~- 486 (675)
T TIGR01497 432 -CE-----------------------DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD- 486 (675)
T ss_pred -EE-----------------------CCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-
Confidence 64 24789999999999999999999999999999999999999999999999996
Q ss_pred CCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 201 EEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 201 ~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.++||++|++|..+|+.+|++|+.|+|+|||+||++||-
T Consensus 487 ------------------------------~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~NDapAL~ 525 (675)
T TIGR01497 487 ------------------------------DFIAEATPEDKIALIRQEQAEGKLVAMTGDGTNDAPALA 525 (675)
T ss_pred ------------------------------EEEcCCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHH
Confidence 789999999999999999999999999999999999973
No 24
>KOG0205|consensus
Probab=99.95 E-value=8.5e-28 Score=225.57 Aligned_cols=210 Identities=26% Similarity=0.305 Sum_probs=171.9
Q ss_pred hhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceE
Q psy885 34 QDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRS 113 (270)
Q Consensus 34 ~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRv 113 (270)
...+..|+.++.+|||+..||.+..+..+++ +....+|||||-|+++|..- ..-+....+.+++++++|||.
T Consensus 390 Keara~ikevhF~PFnPV~Krta~ty~d~dG------~~~r~sKGAPeqil~l~~~~--~~i~~~vh~~id~~AeRGlRS 461 (942)
T KOG0205|consen 390 KEARAGIKEVHFLPFNPVDKRTALTYIDPDG------NWHRVSKGAPEQILKLCNED--HDIPERVHSIIDKFAERGLRS 461 (942)
T ss_pred HHHhhCceEEeeccCCccccceEEEEECCCC------CEEEecCCChHHHHHHhhcc--CcchHHHHHHHHHHHHhcchh
Confidence 4567899999999999999999988877764 67888999999999999753 333445667788899999999
Q ss_pred EEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 114 LEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 114 l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
|++ |++..++...+ .-...+.|+|+.-+.||||.+..++|+.....|+.|.|+|||....+...+
T Consensus 462 LgV-----Arq~v~e~~~~----------~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTg 526 (942)
T KOG0205|consen 462 LAV-----ARQEVPEKTKE----------SPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETG 526 (942)
T ss_pred hhh-----hhhcccccccc----------CCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhh
Confidence 999 88876643211 114579999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCccceeeechhh-cCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 194 RRIGVFTEEEDTTGKSYSGREF-DDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 194 ~~~gi~~~~~~~~~~~i~G~~~-~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
+++|+-.+--+ +..+-|..- ..+.....++.+++..=||.+.|+||++||+.||++||.|+|+|||+||++||
T Consensus 527 rrlgmgtnmyp--ss~llG~~~~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaL 600 (942)
T KOG0205|consen 527 RRLGMGTNMYP--SSALLGLGKDGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPAL 600 (942)
T ss_pred hhhccccCcCC--chhhccCCCCCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhh
Confidence 99998754221 112222221 23344456677888899999999999999999999999999999999999986
No 25
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.93 E-value=6.4e-25 Score=210.34 Aligned_cols=148 Identities=38% Similarity=0.525 Sum_probs=129.7
Q ss_pred EeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeecccc
Q psy885 42 KEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSKVS 121 (270)
Q Consensus 42 ~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~~~~ 121 (270)
.+...||++.+|+|+++++..+ + .|+||+|+.++++|.. +.+....++.+|+|++++
T Consensus 276 ~~~~~~f~~~~~~~~~~~~~~~-------~--~~~~G~~~~i~~~~~~---------~~~~~~~~~~~g~~~~~~----- 332 (499)
T TIGR01494 276 ILNVFEFSSVRKRMSVIVRGPD-------G--TYVKGAPEFVLSRVKD---------LEEKVKELAQSGLRVLAV----- 332 (499)
T ss_pred CcceeccCCCCceEEEEEecCC-------c--EEEeCCHHHHHHhhHH---------HHHHHHHHHhCCCEEEEE-----
Confidence 3467899999999999998632 2 4789999999999863 223334467899999999
Q ss_pred cceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 122 AIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
|++. .++|++.++|++|++++++|+.|+++|++++|+|||+..+|..+|+++||
T Consensus 333 a~~~-----------------------~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi--- 386 (499)
T TIGR01494 333 ASKE-----------------------TLLGLLGLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI--- 386 (499)
T ss_pred EECC-----------------------eEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc---
Confidence 7542 58999999999999999999999999999999999999999999999986
Q ss_pred CCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 202 EEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 202 ~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
+++++|++|.++|+.+|+.|+.|+|+|||+||++||.
T Consensus 387 -------------------------------~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~ 423 (499)
T TIGR01494 387 -------------------------------FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAPALK 423 (499)
T ss_pred -------------------------------eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHHHHH
Confidence 5889999999999999999999999999999999873
No 26
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4e-24 Score=196.89 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=132.2
Q ss_pred eEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccccccCC-eeeeccHHHHHhhhccceEEEeecccc
Q psy885 43 EFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGS-QKVSLKDFSANTRFENLRSLEPKSKVS 121 (270)
Q Consensus 43 ~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~-~~~~l~~~~~~~~~~GlRvl~~~~~~~ 121 (270)
-..+||+.+.|++.+-... ..-+.|||++.|....... ++ .+..++....+-++.|=..|++
T Consensus 370 ~~fvpFtA~TRmSGvd~~~----------~~~irKGA~dai~~~v~~~--~g~~p~~l~~~~~~vs~~GGTPL~V----- 432 (681)
T COG2216 370 AEFVPFTAQTRMSGVDLPG----------GREIRKGAVDAIRRYVRER--GGHIPEDLDAAVDEVSRLGGTPLVV----- 432 (681)
T ss_pred ceeeecceecccccccCCC----------CceeecccHHHHHHHHHhc--CCCCCHHHHHHHHHHHhcCCCceEE-----
Confidence 4568999998766665432 2456799999999987631 22 3444566666668888888888
Q ss_pred cceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 122 AIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
..|-.++|++.++|-+|+++++-+.+||++|||++|+||||+.||..||++.|+.
T Consensus 433 -----------------------~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVD-- 487 (681)
T COG2216 433 -----------------------VENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD-- 487 (681)
T ss_pred -----------------------EECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCch--
Confidence 2456789999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 202 EEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 202 ~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
...|+++||+|.++|+.-|..|+.|+|||||+||++||
T Consensus 488 -----------------------------dfiAeatPEdK~~~I~~eQ~~grlVAMtGDGTNDAPAL 525 (681)
T COG2216 488 -----------------------------DFIAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPAL 525 (681)
T ss_pred -----------------------------hhhhcCChHHHHHHHHHHHhcCcEEEEcCCCCCcchhh
Confidence 67899999999999999999999999999999999997
No 27
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.3e-23 Score=199.82 Aligned_cols=91 Identities=32% Similarity=0.462 Sum_probs=88.4
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHh
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAA 226 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~ 226 (270)
|-.++|++++.|++|++++++|+.||+.||+++|+||||..+|.+||+++||.
T Consensus 525 dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId--------------------------- 577 (713)
T COG2217 525 DGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGID--------------------------- 577 (713)
T ss_pred CCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChH---------------------------
Confidence 45799999999999999999999999999999999999999999999999996
Q ss_pred ccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 227 VARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 227 ~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
.++|.+.|++|.++|+.||++|+.|+|+|||+||++||
T Consensus 578 ----~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPAL 615 (713)
T COG2217 578 ----EVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPAL 615 (713)
T ss_pred ----hheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHH
Confidence 89999999999999999999999999999999999997
No 28
>KOG0207|consensus
Probab=99.86 E-value=2.1e-21 Score=189.15 Aligned_cols=92 Identities=26% Similarity=0.417 Sum_probs=88.8
Q ss_pred CCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHH
Q psy885 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKA 225 (270)
Q Consensus 146 ~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~ 225 (270)
.|-+++|++.++|++|+++..+|..|++.||+++|+||||..||.++|+++||.
T Consensus 710 vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~-------------------------- 763 (951)
T KOG0207|consen 710 VNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID-------------------------- 763 (951)
T ss_pred ECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc--------------------------
Confidence 456789999999999999999999999999999999999999999999999976
Q ss_pred hccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 226 AVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 226 ~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
.|||.+.|+||.++|+.||+++..|+|+|||+||++||
T Consensus 764 -----~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPAL 801 (951)
T KOG0207|consen 764 -----NVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPAL 801 (951)
T ss_pred -----eEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHH
Confidence 89999999999999999999999999999999999987
No 29
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.82 E-value=1.9e-20 Score=158.91 Aligned_cols=94 Identities=34% Similarity=0.552 Sum_probs=88.3
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHh
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAA 226 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~ 226 (270)
++.++|.+.+.|++|+++.++|+.|+++|++++|+|||+..++..+|+++||...
T Consensus 115 ~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~------------------------- 169 (215)
T PF00702_consen 115 NLIFLGLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS------------------------- 169 (215)
T ss_dssp SHEEEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE-------------------------
T ss_pred cCeEEEEEeecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc-------------------------
Confidence 6889999999999999999999999999999999999999999999999999522
Q ss_pred ccCceEEEec--ChhhH--HHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 227 VARARLFSRV--EPAHK--SKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 227 ~~~~~v~ar~--tP~~K--~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.+|+++ +|++| ..+|+.||..++.|+|+|||+||++|+.
T Consensus 170 ----~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 170 ----IVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALK 212 (215)
T ss_dssp ----EEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHH
T ss_pred ----cccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHH
Confidence 699999 99999 9999999977779999999999999973
No 30
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.81 E-value=2.9e-19 Score=178.16 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=116.7
Q ss_pred eeCCCCCCceEEEE-EecCCCCCCCCCccEEEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeecccccc
Q psy885 45 TLEFSRDRKSMSSY-CTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSKVSAI 123 (270)
Q Consensus 45 ~~pF~s~~krmsvi-v~~~~~~~~~~~~~~l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~~~~a~ 123 (270)
.+||.++.+.+.-. ++..-.+ . .+.-|+|+.+.+.. ..+......+..+|+|++.+ ++
T Consensus 497 ~~~~~~~~~~~~g~Gv~~~~~g-----~--~~~ig~~~~~~~~~---------~~~~~~~~~~~~~g~~~v~v-----a~ 555 (741)
T PRK11033 497 AIPEAESQRALAGSGIEGQVNG-----E--RVLICAPGKLPPLA---------DAFAGQINELESAGKTVVLV-----LR 555 (741)
T ss_pred CCCCCcceEEEeeEEEEEEECC-----E--EEEEecchhhhhcc---------HHHHHHHHHHHhCCCEEEEE-----EE
Confidence 36888888877421 2221110 2 23458988875411 11333445568899999999 53
Q ss_pred eeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCC
Q psy885 124 VPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 203 (270)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~ 203 (270)
+..++|+++|+|++|++++++|+.|++.|++++|+|||+..+|.++|+++||.
T Consensus 556 -----------------------~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~---- 608 (741)
T PRK11033 556 -----------------------NDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID---- 608 (741)
T ss_pred -----------------------CCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC----
Confidence 34789999999999999999999999999999999999999999999999993
Q ss_pred CccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 204 DTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 204 ~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.+++++|++|..+|+.||+. +.|+|+|||+||++||.
T Consensus 609 ----------------------------~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~ 645 (741)
T PRK11033 609 ----------------------------FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMK 645 (741)
T ss_pred ----------------------------eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHH
Confidence 46778999999999999965 58999999999999873
No 31
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.74 E-value=7.4e-18 Score=163.57 Aligned_cols=109 Identities=26% Similarity=0.357 Sum_probs=99.8
Q ss_pred HHHHhhhccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCC-CeEEE
Q psy885 102 FSANTRFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAG-IRVIV 180 (270)
Q Consensus 102 ~~~~~~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~ag-i~v~m 180 (270)
....++.+|+|++.+ + .+.+++|.+.++|++||+++++|+.|++.| ++++|
T Consensus 355 ~~~~~~~~g~~~~~v-----~-----------------------~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~i 406 (556)
T TIGR01525 355 LLNEGESQGKTVVFV-----A-----------------------VDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVM 406 (556)
T ss_pred HHHHHhhCCcEEEEE-----E-----------------------ECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEE
Confidence 344567899999999 4 235799999999999999999999999999 99999
Q ss_pred EcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECC
Q psy885 181 ITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSS 260 (270)
Q Consensus 181 lTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGD 260 (270)
+|||+..++..+++++|+. .+|++++|++|..+++.++..++.|+|+||
T Consensus 407 vTgd~~~~a~~i~~~lgi~-------------------------------~~f~~~~p~~K~~~v~~l~~~~~~v~~vGD 455 (556)
T TIGR01525 407 LTGDNRSAAEAVAAELGID-------------------------------EVHAELLPEDKLAIVKELQEEGGVVAMVGD 455 (556)
T ss_pred EeCCCHHHHHHHHHHhCCC-------------------------------eeeccCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence 9999999999999999995 789999999999999999999999999999
Q ss_pred cHhhhhhhc
Q psy885 261 TGKTELRIF 269 (270)
Q Consensus 261 G~ND~~ai~ 269 (270)
|.||+.|+.
T Consensus 456 g~nD~~al~ 464 (556)
T TIGR01525 456 GINDAPALA 464 (556)
T ss_pred ChhHHHHHh
Confidence 999998863
No 32
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.71 E-value=1.3e-16 Score=161.41 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=110.8
Q ss_pred EEEeCChHHHHHhccccccCCeeeeccHHHHHhhhccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEE
Q psy885 74 LFVKGAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGV 153 (270)
Q Consensus 74 l~~KGApe~Il~~c~~~~~~~~~~~l~~~~~~~~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~ 153 (270)
.+.+|+++.+.+.... ...+.+.......+|.+++.+ ++ +..++|+
T Consensus 599 ~~~~G~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~v~v-----a~-----------------------~~~~~g~ 644 (834)
T PRK10671 599 ALLLGNQALLNEQQVD------TKALEAEITAQASQGATPVLL-----AV-----------------------DGKAAAL 644 (834)
T ss_pred EEEEeCHHHHHHcCCC------hHHHHHHHHHHHhCCCeEEEE-----EE-----------------------CCEEEEE
Confidence 3567999977542210 112334445557889999998 53 2358999
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEE
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLF 233 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ 233 (270)
+.+.|++|+++.++|+.|++.|++++|+|||+..++..+|+++||. .+|
T Consensus 645 ~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~-------------------------------~~~ 693 (834)
T PRK10671 645 LAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID-------------------------------EVI 693 (834)
T ss_pred EEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC-------------------------------EEE
Confidence 9999999999999999999999999999999999999999999996 789
Q ss_pred EecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 234 SRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
+++.|++|.++++.++.+++.|+|+|||+||+.|+.
T Consensus 694 ~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 694 AGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALA 729 (834)
T ss_pred eCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHH
Confidence 999999999999999999999999999999999874
No 33
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.67 E-value=6.7e-16 Score=149.30 Aligned_cols=93 Identities=28% Similarity=0.423 Sum_probs=88.3
Q ss_pred CCeEEEEEEeecCCCchhHHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHH
Q psy885 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGI-RVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQK 224 (270)
Q Consensus 146 ~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi-~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~ 224 (270)
.|..++|.+.++|++|++++++|+.|+++|+ +++|+|||+..++..+++++|+.
T Consensus 349 ~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~------------------------- 403 (536)
T TIGR01512 349 RDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID------------------------- 403 (536)
T ss_pred ECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh-------------------------
Confidence 3578999999999999999999999999999 99999999999999999999996
Q ss_pred HhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 225 AAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 225 ~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.+|+++.|++|..+++.++..++.|+|+|||.||+.|+.
T Consensus 404 ------~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~ 442 (536)
T TIGR01512 404 ------EVHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALA 442 (536)
T ss_pred ------hhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 678999999999999999999999999999999999863
No 34
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.64 E-value=1.2e-15 Score=148.12 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=86.7
Q ss_pred CCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHH
Q psy885 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKA 225 (270)
Q Consensus 146 ~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~ 225 (270)
.+.+++|++.++|++||+++++|+.|++.|++++|+|||+..++..+|+++||
T Consensus 392 ~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi--------------------------- 444 (562)
T TIGR01511 392 VNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI--------------------------- 444 (562)
T ss_pred ECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC---------------------------
Confidence 46789999999999999999999999999999999999999999999999998
Q ss_pred hccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 226 AVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 226 ~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
.+|+++.|++|.++++.+++.++.|+|+|||.||+.|+.
T Consensus 445 -----~~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~ 483 (562)
T TIGR01511 445 -----NVRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALA 483 (562)
T ss_pred -----cEEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHh
Confidence 267888999999999999999999999999999999863
No 35
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.46 E-value=2.9e-13 Score=104.69 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=85.8
Q ss_pred eEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhc
Q psy885 148 LTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAV 227 (270)
Q Consensus 148 l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~ 227 (270)
..+.+.++---.+-++++++|+.|++. +++++.|||...+....|.-.||...
T Consensus 19 ~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~-------------------------- 71 (152)
T COG4087 19 GKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVE-------------------------- 71 (152)
T ss_pred ceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCcee--------------------------
Confidence 456788888888999999999999999 99999999999999999999998643
Q ss_pred cCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 228 ARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 228 ~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
++||...|+.|..|++.|++.++.|.|+|||+||.+||+
T Consensus 72 ---rv~a~a~~e~K~~ii~eLkk~~~k~vmVGnGaND~laLr 110 (152)
T COG4087 72 ---RVFAGADPEMKAKIIRELKKRYEKVVMVGNGANDILALR 110 (152)
T ss_pred ---eeecccCHHHHHHHHHHhcCCCcEEEEecCCcchHHHhh
Confidence 899999999999999999999999999999999999985
No 36
>PF13246 Hydrolase_like2: Putative hydrolase of sodium-potassium ATPase alpha subunit
Probab=99.44 E-value=8.6e-14 Score=103.49 Aligned_cols=67 Identities=28% Similarity=0.363 Sum_probs=52.7
Q ss_pred CCCccccCChhHHH--hhhhhhhhhcceEeEeeCCCCCCceEEEEEecCCCCCCCCCccEEEEeCChHHHHHhccc
Q psy885 16 PNHCVSFSGRREQA--IAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTH 89 (270)
Q Consensus 16 ~~~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~pF~s~~krmsviv~~~~~~~~~~~~~~l~~KGApe~Il~~c~~ 89 (270)
+..+.+.+...... ......++..|++++++||||+||||+|+++..+ .+++|+|||||+|+++|+.
T Consensus 22 ~ptE~ALl~~~~~~g~~~~~~~~~~~~~~~~~~pF~S~rK~msvv~~~~~-------~~~~~~KGA~e~il~~Ct~ 90 (91)
T PF13246_consen 22 DPTEKALLRFAKKLGVGIDIKEIRSKYKIVAEIPFDSERKRMSVVVRNDG-------KYILYVKGAPEVILDRCTH 90 (91)
T ss_pred CcCHHHHHHHHHHcCCCCcHHHHHhhcceeEEEccCcccceeEEEEeCCC-------EEEEEcCCChHHHHHhcCC
Confidence 34444555555555 3346788999999999999999999999998211 4777999999999999986
No 37
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.74 E-value=4.2e-08 Score=83.54 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCC---ccc-eeeechhhcCCCHHHHHHhccCceEEE
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEED---TTG-KSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~---~~~-~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
+++|++.++|+.|++.+ ++.++||-....+..+++.+|+..--.. +.. -.++|. .+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~-----------------~~-- 127 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGY-----------------QL-- 127 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECe-----------------ee--
Confidence 68999999999999975 9999999999999999999998621000 000 112221 11
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 235 RVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
..|+.|..+++.+++.|..+.|+|||.||..|+-
T Consensus 128 -~~~~~K~~~l~~l~~~~~~~v~vGDs~nDl~ml~ 161 (203)
T TIGR02137 128 -RQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLS 161 (203)
T ss_pred -cCcchHHHHHHHHHhhCCCEEEEeCCHHHHHHHH
Confidence 3578999999999988888999999999998863
No 38
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.70 E-value=4.2e-08 Score=81.71 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChh-h
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPA-H 240 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~-~ 240 (270)
+++.+.|+.++++|++++|+||+....+..+|+.+|+.... +-+..+..-. ......+.+|. +
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~-------v~~~~~~~~~---------~~~~~~~~~~~~~ 155 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDN-------VIGNELFDNG---------GGIFTGRITGSNC 155 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGG-------EEEEEEECTT---------CCEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceE-------EEEEeeeecc---------cceeeeeECCCCC
Confidence 77779999999999999999999999999999999997421 1111111000 12556677766 4
Q ss_pred --HHHHHHHH------hhCCCEEEEECCcHhhhhhhc
Q psy885 241 --KSKIVEFL------QGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 241 --K~~iV~~l------q~~g~~V~miGDG~ND~~ai~ 269 (270)
|...++.+ +.....+.++|||.||.+|+.
T Consensus 156 ~~K~~~l~~~~~~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 156 GGKAEALKELYIRDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp SHHHHHHHHHHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence 99999999 345789999999999999974
No 39
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.62 E-value=2.2e-07 Score=79.64 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=72.9
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCc---cceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT---TGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~---~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
.+++|++.+.++.++++|.+|+++||-...-+..+|+.+|+...-... ..-+++| .+..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG------------------~v~g 137 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTG------------------RVVG 137 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEec------------------eeee
Confidence 789999999999999999999999999999999999999997432110 0013444 4555
Q ss_pred ecCh-hhHHHHHHHHhh-CCC---EEEEECCcHhhhhhhc
Q psy885 235 RVEP-AHKSKIVEFLQG-MNE---ISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP-~~K~~iV~~lq~-~g~---~V~miGDG~ND~~ai~ 269 (270)
..+. +.|...++.+.+ .|. .+.++|||.||.+||-
T Consensus 138 ~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~ 177 (212)
T COG0560 138 PICDGEGKAKALRELAAELGIPLEETVAYGDSANDLPMLE 177 (212)
T ss_pred eecCcchHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHH
Confidence 4444 789888866654 465 4999999999999974
No 40
>KOG1615|consensus
Probab=98.62 E-value=9.3e-08 Score=79.25 Aligned_cols=92 Identities=13% Similarity=0.219 Sum_probs=68.6
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceee--ec-----hhhcCCCHHHHHHhccCceE
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSY--SG-----REFDDLPLSEQKAAVARARL 232 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i--~G-----~~~~~l~~~~~~~~~~~~~v 232 (270)
+-|++++.++.|++.|.+|+++||.....+..||.++||...+-....+.+ .| +.....
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~pt-------------- 154 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPT-------------- 154 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCcc--------------
Confidence 579999999999999999999999999999999999999864322111111 11 111111
Q ss_pred EEecChhhHHHHHHHHhhC--CCEEEEECCcHhhhhhh
Q psy885 233 FSRVEPAHKSKIVEFLQGM--NEISAMDSSTGKTELRI 268 (270)
Q Consensus 233 ~ar~tP~~K~~iV~~lq~~--g~~V~miGDG~ND~~ai 268 (270)
+...-|.+++..+++. ...++|||||+||..|+
T Consensus 155 ---sdsggKa~~i~~lrk~~~~~~~~mvGDGatDlea~ 189 (227)
T KOG1615|consen 155 ---SDSGGKAEVIALLRKNYNYKTIVMVGDGATDLEAM 189 (227)
T ss_pred ---ccCCccHHHHHHHHhCCChheeEEecCCccccccC
Confidence 2344899999999884 35799999999997664
No 41
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.44 E-value=7.5e-07 Score=73.26 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=67.3
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCc----cceeeechhhcCCCHHHHHHhccCceEEEe
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT----TGKSYSGREFDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~----~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar 235 (270)
+++++.+.++.+++.|++++++||.....+..++..+|+..--... ....++|.... . ..
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~--------------~--~~ 137 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEG--------------Q--VN 137 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCC--------------c--cc
Confidence 6899999999999999999999999999999999999985210000 00011121000 0 12
Q ss_pred cChhhHHHHHHHHhhC----CCEEEEECCcHhhhhhhc
Q psy885 236 VEPAHKSKIVEFLQGM----NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 236 ~tP~~K~~iV~~lq~~----g~~V~miGDG~ND~~ai~ 269 (270)
..+..|..+++.+++. ...|.++|||.||..|+.
T Consensus 138 ~~~~~K~~~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 138 PEGECKGKVLKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred CCcchHHHHHHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 4567899999887654 346899999999998863
No 42
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.33 E-value=2.6e-06 Score=70.53 Aligned_cols=105 Identities=16% Similarity=0.017 Sum_probs=69.7
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEe-c
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSR-V 236 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar-~ 236 (270)
-++++++.++++.|++.|+++.++|+........+.+..|+..-- ..++++..... ....+.-...++..+.. .
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f----~~i~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 145 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVF----IEIYSNPASFD-NDGRHIVWPHHCHGCCSCP 145 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhhe----eEEeccCceEC-CCCcEEEecCCCCccCcCC
Confidence 489999999999999999999999999999999999988875321 11222211100 00000000011111111 1
Q ss_pred ChhhHHHHHHHHhhC-CCEEEEECCcHhhhhh
Q psy885 237 EPAHKSKIVEFLQGM-NEISAMDSSTGKTELR 267 (270)
Q Consensus 237 tP~~K~~iV~~lq~~-g~~V~miGDG~ND~~a 267 (270)
....|..+++.++.+ ...+.|+|||.||..|
T Consensus 146 ~g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~a 177 (188)
T TIGR01489 146 CGCCKGKVIHKLSEPKYQHIIYIGDGVTDVCP 177 (188)
T ss_pred CCCCHHHHHHHHHhhcCceEEEECCCcchhch
Confidence 223699999999887 8889999999999665
No 43
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.30 E-value=4.3e-06 Score=71.49 Aligned_cols=102 Identities=12% Similarity=-0.041 Sum_probs=69.7
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEE--Ee
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLF--SR 235 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~--ar 235 (270)
-+++|++.++++.|++.|+++.++||.....+..+.+.++.... -......++|..+.... +.-..+ ..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~-i~~n~~~~~~~~~~~~~--------p~~~~~~~~~ 139 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDR-IYCNEADFSNEYIHIDW--------PHPCDGTCQN 139 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCccc-EEeceeEeeCCeeEEeC--------CCCCcccccc
Confidence 47999999999999999999999999999999888887744211 00011233333322110 000111 11
Q ss_pred cChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 236 VEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 236 ~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
.+...|..+++.++.....|.|+|||.||..|.
T Consensus 140 ~cg~~K~~~l~~~~~~~~~~i~iGDg~~D~~~a 172 (214)
T TIGR03333 140 QCGCCKPSLIRKLSEPNDYHIVIGDSVTDVEAA 172 (214)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence 224579999999987778899999999997764
No 44
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.22 E-value=5.8e-06 Score=69.76 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE--ec
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS--RV 236 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a--r~ 236 (270)
++.|++.++++.|++. +++.++|+.....+..+...+|+..--. ......+.. .+.. -.
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~--~~~~~~~~~----------------~i~~~~~~ 128 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFC--HSLEVDEDG----------------MITGYDLR 128 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhc--ceEEECCCC----------------eEECcccc
Confidence 4689999999999999 9999999999999999999999852100 000010000 1111 12
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
.|..|..+++.++..+..+.|+|||.||..|.
T Consensus 129 ~p~~k~~~l~~~~~~~~~~v~iGDs~~D~~~~ 160 (205)
T PRK13582 129 QPDGKRQAVKALKSLGYRVIAAGDSYNDTTML 160 (205)
T ss_pred ccchHHHHHHHHHHhCCeEEEEeCCHHHHHHH
Confidence 47889999999988888999999999997653
No 45
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.21 E-value=6e-06 Score=75.15 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=66.9
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCC---ccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEED---TTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~---~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
=++.|++.++|+.|++.|+++.++||.....+..+.+++|+..--.. +....++|.....
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~----------------- 242 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGD----------------- 242 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCc-----------------
Confidence 36899999999999999999999999998888899999998521000 0001112211100
Q ss_pred ecChhhHHHHHHHHhhC-C---CEEEEECCcHhhhhhh
Q psy885 235 RVEPAHKSKIVEFLQGM-N---EISAMDSSTGKTELRI 268 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai 268 (270)
-+....|.++++.+.++ | ..|.|+|||.||..|+
T Consensus 243 iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg~NDl~m~ 280 (322)
T PRK11133 243 IVDAQYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMI 280 (322)
T ss_pred cCCcccHHHHHHHHHHHcCCChhhEEEEECCHHHHHHH
Confidence 02346789888887653 4 5799999999999886
No 46
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.20 E-value=9.2e-06 Score=68.05 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=65.7
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++++++.++|+.|++.|+++.++|+-....+..+++.+|+..- .+..+...+-.... . ..+....|
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~----~~~~~~~~~~g~~~--------p--~~~~~~~~ 145 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYV----YSNELVFDEKGFIQ--------P--DGIVRVTF 145 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeE----EEEEEEEcCCCeEe--------c--ceeeEEcc
Confidence 6899999999999999999999999999999999999997421 01111110000000 0 11223456
Q ss_pred hhHHHHHHHHhhC-C---CEEEEECCcHhhhhhh
Q psy885 239 AHKSKIVEFLQGM-N---EISAMDSSTGKTELRI 268 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai 268 (270)
..|..+++.+.+. | ..+.|+||+.||..|.
T Consensus 146 ~~k~~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a 179 (201)
T TIGR01491 146 DNKGEAVERLKRELNPSLTETVAVGDSKNDLPMF 179 (201)
T ss_pred ccHHHHHHHHHHHhCCCHHHEEEEcCCHhHHHHH
Confidence 6787777776543 2 4599999999998764
No 47
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.17 E-value=1e-05 Score=69.07 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCc---cceeeechhhcCCCHHHHHHhccCceEEEe
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT---TGKSYSGREFDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~---~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar 235 (270)
++++++.++|+.|++.|+++.++||.....+..+++.+|+..--... ....++| .+.+.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~ 146 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTG------------------LVEGP 146 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEE------------------EecCc
Confidence 68999999999999999999999999999999999999986310000 0000111 01111
Q ss_pred -cChhhHHHHHHHHhhC-C---CEEEEECCcHhhhhhh
Q psy885 236 -VEPAHKSKIVEFLQGM-N---EISAMDSSTGKTELRI 268 (270)
Q Consensus 236 -~tP~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai 268 (270)
..+..|..+++.+.++ | ..+.|+||+.+|+.|.
T Consensus 147 ~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa 184 (219)
T TIGR00338 147 IVDASYKGKTLLILLRKEGISPENTVAVGDGANDLSMI 184 (219)
T ss_pred ccCCcccHHHHHHHHHHcCCCHHHEEEEECCHHHHHHH
Confidence 1233477777765443 3 3588999999998774
No 48
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.14 E-value=1.3e-05 Score=61.76 Aligned_cols=110 Identities=9% Similarity=-0.049 Sum_probs=73.4
Q ss_pred eecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 155 GMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 155 ~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
....++.+++.+.++.|++.|++++++||.....+..+.+.+|+..... .++.......-..............+.
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFD----PVITSNGAAIYYPKEGLFLGGGPFDIG 95 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhh----heeccchhhhhcccccccccccccccC
Confidence 4556889999999999999999999999999999999999998842211 111111110000000000111224444
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 235 RVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
+-.|+.+..+.+.+......+.++||+.+|+.|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~ 129 (139)
T cd01427 96 KPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMA 129 (139)
T ss_pred CCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHH
Confidence 5667777777777765567899999999998775
No 49
>PLN02954 phosphoserine phosphatase
Probab=98.11 E-value=1.9e-05 Score=67.55 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=62.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCcccee------eechhhcCCCHHHHHHhccCceE
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKS------YSGREFDDLPLSEQKAAVARARL 232 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~------i~G~~~~~l~~~~~~~~~~~~~v 232 (270)
+++|++.++++.|++.|+++.++||.....+..+++.+|+....-....+. ++|.... ..
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~--------------~~ 149 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDEN--------------EP 149 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCC--------------Cc
Confidence 478999999999999999999999999999999999999863110000000 1110000 00
Q ss_pred EEecChhhHHHHHHHHhhC-C-CEEEEECCcHhhhhh
Q psy885 233 FSRVEPAHKSKIVEFLQGM-N-EISAMDSSTGKTELR 267 (270)
Q Consensus 233 ~ar~tP~~K~~iV~~lq~~-g-~~V~miGDG~ND~~a 267 (270)
. ..+..|...++.+.+. | ..+.|+||+.||..|
T Consensus 150 ~--~~~~~K~~~i~~~~~~~~~~~~i~iGDs~~Di~a 184 (224)
T PLN02954 150 T--SRSGGKAEAVQHIKKKHGYKTMVMIGDGATDLEA 184 (224)
T ss_pred c--cCCccHHHHHHHHHHHcCCCceEEEeCCHHHHHh
Confidence 0 1123477777776553 3 468999999999776
No 50
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.10 E-value=1.8e-05 Score=67.91 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=66.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCcc--ceeeechhhcCCCHHHHHHhccCceE--EE
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTT--GKSYSGREFDDLPLSEQKAAVARARL--FS 234 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~--~~~i~G~~~~~l~~~~~~~~~~~~~v--~a 234 (270)
+++|++.++++.|++.|+++.++||-....+..+.+.+ +.. ..+. ...++|..+..-. +.-.. +.
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~--~~i~~n~~~~~~~~~~~~k--------p~p~~~~~~ 142 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPK--EQIYCNGSDFSGEYITITW--------PHPCDEHCQ 142 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCc--CcEEEeEEEecCCeeEEec--------cCCcccccc
Confidence 68999999999999999999999999999999999887 643 1111 1223333221000 00000 00
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 235 RVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
..+...|..+++.++.....|.|+|||.||..|.
T Consensus 143 ~~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa 176 (219)
T PRK09552 143 NHCGCCKPSLIRKLSDTNDFHIVIGDSITDLEAA 176 (219)
T ss_pred ccCCCchHHHHHHhccCCCCEEEEeCCHHHHHHH
Confidence 0012348889988887777899999999998764
No 51
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.00 E-value=3.5e-05 Score=62.60 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHH
Q psy885 167 SIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVE 246 (270)
Q Consensus 167 ~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~ 246 (270)
+|+.|++.|+++.|+||+....+..+.+.+|+. ..|... ..|...+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~-------------------------------~~~~~~--~~k~~~~~ 82 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT-------------------------------HLYQGQ--SNKLIAFS 82 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC-------------------------------EEEecc--cchHHHHH
Confidence 899999999999999999999999999999986 222221 23455555
Q ss_pred HH-hhC---CCEEEEECCcHhhhhhh
Q psy885 247 FL-QGM---NEISAMDSSTGKTELRI 268 (270)
Q Consensus 247 ~l-q~~---g~~V~miGDG~ND~~ai 268 (270)
.+ ++. ...+.|+||+.||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~vGDs~~D~~~~ 108 (154)
T TIGR01670 83 DILEKLALAPENVAYIGDDLIDWPVM 108 (154)
T ss_pred HHHHHcCCCHHHEEEECCCHHHHHHH
Confidence 44 332 35799999999998875
No 52
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.96 E-value=3.1e-05 Score=65.13 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=67.1
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCC-c---cceeeechhhcCCCHHHHHHhccCceE
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEED-T---TGKSYSGREFDDLPLSEQKAAVARARL 232 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~-~---~~~~i~G~~~~~l~~~~~~~~~~~~~v 232 (270)
..++++++.+.|+.+++.|++++++||.....+..+++.+|+..--.. . ....++|+...
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~---------------- 148 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDG---------------- 148 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccC----------------
Confidence 457899999999999999999999999999999999999998521000 0 00011221100
Q ss_pred EEecChhhHHHHHHHHhh-CCC---EEEEECCcHhhhhhh
Q psy885 233 FSRVEPAHKSKIVEFLQG-MNE---ISAMDSSTGKTELRI 268 (270)
Q Consensus 233 ~ar~tP~~K~~iV~~lq~-~g~---~V~miGDG~ND~~ai 268 (270)
-.+.++.|...++.+.+ .+. .+.++||+.+|..|+
T Consensus 149 -~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~ 187 (202)
T TIGR01490 149 -NNCKGEGKVHALAELLAEEQIDLKDSYAYGDSISDLPLL 187 (202)
T ss_pred -CCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCcccHHHH
Confidence 11346788888877643 342 688999999999876
No 53
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.78 E-value=7e-05 Score=62.62 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=54.6
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHH
Q psy885 166 DSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIV 245 (270)
Q Consensus 166 ~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV 245 (270)
..|+.|++.|+++.++||.....+..+++++|+. .+|. ....|...+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~-------------------------------~~f~--g~~~k~~~l 101 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT-------------------------------HLYQ--GQSNKLIAF 101 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc-------------------------------eeec--CCCcHHHHH
Confidence 5899999999999999999999999999999985 2332 223465555
Q ss_pred HHH-hhCC---CEEEEECCcHhhhhhh
Q psy885 246 EFL-QGMN---EISAMDSSTGKTELRI 268 (270)
Q Consensus 246 ~~l-q~~g---~~V~miGDG~ND~~ai 268 (270)
+.+ ++.| .-|+|+||+.||..|+
T Consensus 102 ~~~~~~~gl~~~ev~~VGDs~~D~~~a 128 (183)
T PRK09484 102 SDLLEKLAIAPEQVAYIGDDLIDWPVM 128 (183)
T ss_pred HHHHHHhCCCHHHEEEECCCHHHHHHH
Confidence 554 4444 4699999999998875
No 54
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.76 E-value=0.00017 Score=62.01 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=65.0
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
...+-+++.+++..|+++|++..++|+.....+..+.+..|+..--. .++.+.... ...-
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~----~i~g~~~~~----------------~~KP 146 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFD----VIVGGDDVP----------------PPKP 146 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccc----eEEcCCCCC----------------CCCc
Confidence 55789999999999999999999999999999999999999974321 111111111 1112
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
.|..-..+++.+.-....++||||..+|+.|
T Consensus 147 ~P~~l~~~~~~~~~~~~~~l~VGDs~~Di~a 177 (220)
T COG0546 147 DPEPLLLLLEKLGLDPEEALMVGDSLNDILA 177 (220)
T ss_pred CHHHHHHHHHHhCCChhheEEECCCHHHHHH
Confidence 4455555555554443479999999999765
No 55
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.75 E-value=0.00022 Score=63.35 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEE 202 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~ 202 (270)
-++|||+.+.++.|++.|+++.++||-....+..+.++.|+....
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~ 164 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPN 164 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcC
Confidence 357999999999999999999999999999999999999986444
No 56
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.72 E-value=0.00011 Score=60.71 Aligned_cols=72 Identities=10% Similarity=0.096 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecC--hhhHHH
Q psy885 166 DSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVE--PAHKSK 243 (270)
Q Consensus 166 ~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~t--P~~K~~ 243 (270)
..|+.|++.|+++.++|+.....+..+.+.+|+. ..|.... |+--..
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~-------------------------------~~f~~~kpkp~~~~~ 89 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK-------------------------------RFHEGIKKKTEPYAQ 89 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc-------------------------------EEEecCCCCHHHHHH
Confidence 5789999999999999999999999999999996 3333332 333333
Q ss_pred HHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 244 IVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 244 iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
+++.+.-...-|+|+||+.||..|+
T Consensus 90 ~~~~l~~~~~ev~~iGD~~nDi~~~ 114 (169)
T TIGR02726 90 MLEEMNISDAEVCYVGDDLVDLSMM 114 (169)
T ss_pred HHHHcCcCHHHEEEECCCHHHHHHH
Confidence 3333322235699999999998876
No 57
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.54 E-value=0.00032 Score=59.78 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=62.2
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
.-++.+++.++++.|++.|+++.++||........+.+..|+...- ..++++..+.. ..-
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f----~~~~~~~~~~~----------------~kp 150 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYF----SVVIGGDSLPN----------------KKP 150 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCc----cEEEcCCCCCC----------------CCc
Confidence 3568999999999999999999999999999999999999985321 11222211110 011
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
.|+-=..+++.++-....+.|+||+.+|+.|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a 182 (226)
T PRK13222 151 DPAPLLLACEKLGLDPEEMLFVGDSRNDIQAA 182 (226)
T ss_pred ChHHHHHHHHHcCCChhheEEECCCHHHHHHH
Confidence 22222334444444456799999999998764
No 58
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.50 E-value=0.00031 Score=59.07 Aligned_cols=90 Identities=13% Similarity=-0.039 Sum_probs=62.7
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
.+++.+++.++++.|++.|+++.++||-....+..+.+.+|+..-- ..++++.+. ..+-
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f----~~~~~~~~~-----------------~~KP 162 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILF----PVQIWMEDC-----------------PPKP 162 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhC----CEEEeecCC-----------------CCCc
Confidence 3456777899999999999999999999999999999999986321 112222211 1133
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
.|+--..+++.+.-...-++||||+.+|+.|
T Consensus 163 ~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~a 193 (197)
T TIGR01548 163 NPEPLILAAKALGVEACHAAMVGDTVDDIIT 193 (197)
T ss_pred CHHHHHHHHHHhCcCcccEEEEeCCHHHHHH
Confidence 4444344555554445679999999999765
No 59
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.42 E-value=0.0005 Score=58.11 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=38.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++.+++.++++.|++.|+++.++|+-....+..+.+..|+.
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 68999999999999999999999999999999999999985
No 60
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.38 E-value=0.00084 Score=58.51 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcC----CCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITG----DNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLF 233 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTG----D~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ 233 (270)
-.+.+++.++++.|++.|+++.+||+ -...|+..+.+..|+..... .. .++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~--f~-----------------------vil 167 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNM--NP-----------------------VIF 167 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccc--ee-----------------------EEE
Confidence 44778899999999999999999999 45779999999899942110 11 222
Q ss_pred EecCh--hhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 234 SRVEP--AHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 234 ar~tP--~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
+.-++ ..|.. .+++.| +++|+||..+|..|
T Consensus 168 ~gd~~~K~~K~~---~l~~~~-i~I~IGDs~~Di~a 199 (237)
T PRK11009 168 AGDKPGQYTKTQ---WLKKKN-IRIFYGDSDNDITA 199 (237)
T ss_pred cCCCCCCCCHHH---HHHhcC-CeEEEcCCHHHHHH
Confidence 22221 33444 444555 48999999999755
No 61
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.33 E-value=0.0011 Score=55.81 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVE 237 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~t 237 (270)
-++.+++.++++.|++.|+++.++|+.....+..+.+..|+..--. .+++..+. ...+-.
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~----~i~~~~~~----------------~~~KP~ 133 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFD----HVIGSDEV----------------PRPKPA 133 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhhee----eEEecCcC----------------CCCCCC
Confidence 3788999999999999999999999999888888888888853111 11221111 001112
Q ss_pred hhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 238 PAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 238 P~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
|+-=..+++.+.-...-++||||+.+|+.|
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~igD~~~Di~a 163 (205)
T TIGR01454 134 PDIVREALRLLDVPPEDAVMVGDAVTDLAS 163 (205)
T ss_pred hHHHHHHHHHcCCChhheEEEcCCHHHHHH
Confidence 222223333333234569999999999754
No 62
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.29 E-value=0.0012 Score=56.11 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.+++.++++.|++.|+++.++|+.....+..+.+..|+..-- ..++++.... ..+-.|
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f----~~i~~~~~~~----------------~~Kp~p 141 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFF----DVVITLDDVE----------------HAKPDP 141 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhce----eEEEecCcCC----------------CCCCCc
Confidence 47899999999999999999999999999999888899986321 1122221110 011123
Q ss_pred hhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
+-=..+++.+.-....++||||+.+|+.|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~iGDs~~Di~a 170 (214)
T PRK13288 142 EPVLKALELLGAKPEEALMVGDNHHDILA 170 (214)
T ss_pred HHHHHHHHHcCCCHHHEEEECCCHHHHHH
Confidence 32233444443334568999999999765
No 63
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.23 E-value=0.0013 Score=56.77 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=59.6
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++.|++.|+++.++|+.....+..+-+..|+...- ..++++.... ..+-.|
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f----~~i~~~~~~~----------------~~KP~p 154 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRC----AVLIGGDTLA----------------ERKPHP 154 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcc----cEEEecCcCC----------------CCCCCH
Confidence 67899999999999999999999999988888877888875321 1122222110 011223
Q ss_pred hhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
+-=..+++.+.-...-++||||+.+|+.|
T Consensus 155 ~~~~~~~~~l~~~p~~~l~IGDs~~Di~a 183 (229)
T PRK13226 155 LPLLVAAERIGVAPTDCVYVGDDERDILA 183 (229)
T ss_pred HHHHHHHHHhCCChhhEEEeCCCHHHHHH
Confidence 22233444444334669999999999765
No 64
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.22 E-value=0.0011 Score=58.96 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=38.5
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
..++.+++.++|+.|+..|+++.|+|+-....+..+....|+.
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~ 141 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG 141 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH
Confidence 3478999999999999999999999999988888888888874
No 65
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.20 E-value=0.002 Score=57.38 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
++.|++.++++.|++.|+++.++|+.....+..+-+.+|+..
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~ 183 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS 183 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh
Confidence 678999999999999999999999999999999999999853
No 66
>PRK08238 hypothetical protein; Validated
Probab=97.16 E-value=0.0024 Score=61.25 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=62.1
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
|+++++.+.++.+++.|++++++|+-....+..+++.+|+.+ .++.++.. .+..|
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd-------~Vigsd~~------------------~~~kg 126 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFD-------GVFASDGT------------------TNLKG 126 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC-------EEEeCCCc------------------cccCC
Confidence 478999999999999999999999999999999999999842 23333221 13556
Q ss_pred hhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 239 AHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
+.|...+...-..+ -+.++||..+|..+.
T Consensus 127 ~~K~~~l~~~l~~~-~~~yvGDS~~Dlp~~ 155 (479)
T PRK08238 127 AAKAAALVEAFGER-GFDYAGNSAADLPVW 155 (479)
T ss_pred chHHHHHHHHhCcc-CeeEecCCHHHHHHH
Confidence 66766554322222 257889999998875
No 67
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.14 E-value=0.0013 Score=57.25 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=56.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGD----NKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD----~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
.+.+++.++++.+++.|+++.++|+= ...++..+.+.+|+.... ..+++|+....
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f----~~i~~~d~~~~----------------- 172 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMN----PVIFAGDKPGQ----------------- 172 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchhe----eEEECCCCCCC-----------------
Confidence 34555999999999999999999996 677999999999996321 12333322110
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 235 RVEPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
-.| +|. ..+++.| ++.|+||..||..|
T Consensus 173 -~Kp-~~~---~~l~~~~-i~i~vGDs~~DI~a 199 (237)
T TIGR01672 173 -YQY-TKT---QWIQDKN-IRIHYGDSDNDITA 199 (237)
T ss_pred -CCC-CHH---HHHHhCC-CeEEEeCCHHHHHH
Confidence 012 232 3455555 47999999999865
No 68
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.14 E-value=0.0043 Score=54.96 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=61.7
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEE
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDN---KATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLF 233 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~---~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ 233 (270)
..++-|++.++++.|++.|+++.++|+=. ...+...-+..|+...... .++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d--------------------------~ll 169 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEE--------------------------HLL 169 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcc--------------------------eEE
Confidence 45678999999999999999999999954 3334455566788632111 344
Q ss_pred EecChhhHHHHHHHHhhCCCEEEEECCcHhhhhhh
Q psy885 234 SRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELRI 268 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai 268 (270)
.|-....|....+.+.+...+|+++||-.+|....
T Consensus 170 lr~~~~~K~~rr~~I~~~y~Ivl~vGD~~~Df~~~ 204 (266)
T TIGR01533 170 LKKDKSSKESRRQKVQKDYEIVLLFGDNLLDFDDF 204 (266)
T ss_pred eCCCCCCcHHHHHHHHhcCCEEEEECCCHHHhhhh
Confidence 44333456677777766667899999999998654
No 69
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.09 E-value=0.0023 Score=53.64 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++.+++.++++.|++.|+++.++|+-+......+.+.+|+.
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh
Confidence 57899999999999999999999998888888888888974
No 70
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.07 E-value=0.00067 Score=54.73 Aligned_cols=70 Identities=23% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHH
Q psy885 166 DSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIV 245 (270)
Q Consensus 166 ~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV 245 (270)
.-|+.|.++||++.+|||-+...+..=|+++||. .+|-. ..+|....
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~-------------------------------~~~qG--~~dK~~a~ 88 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK-------------------------------HLYQG--ISDKLAAF 88 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc-------------------------------eeeec--hHhHHHHH
Confidence 3588899999999999999999999999999996 33332 34777777
Q ss_pred HHHhhC-C---CEEEEECCcHhhhhhh
Q psy885 246 EFLQGM-N---EISAMDSSTGKTELRI 268 (270)
Q Consensus 246 ~~lq~~-g---~~V~miGDG~ND~~ai 268 (270)
+.|.++ + .-|+++||-.||-+++
T Consensus 89 ~~L~~~~~l~~e~~ayiGDD~~Dlpvm 115 (170)
T COG1778 89 EELLKKLNLDPEEVAYVGDDLVDLPVM 115 (170)
T ss_pred HHHHHHhCCCHHHhhhhcCccccHHHH
Confidence 776543 2 4699999999998875
No 71
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.03 E-value=0.0033 Score=54.86 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++.|++.|+++.++|+.....+..+-+..|+..-- ...++++.+.. +..|
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f---~d~ii~~~~~~------------------~~KP 157 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYR---PDYNVTTDDVP------------------AGRP 157 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCC---CceEEccccCC------------------CCCC
Confidence 56899999999999999999999999999999888888876321 01223222211 1123
Q ss_pred hhHHHHHHHHhhCC----CEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMN----EISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g----~~V~miGDG~ND~~a 267 (270)
+...+..++++.| ..++||||..+|+.|
T Consensus 158 -~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~a 189 (253)
T TIGR01422 158 -APWMALKNAIELGVYDVAACVKVGDTVPDIEE 189 (253)
T ss_pred -CHHHHHHHHHHcCCCCchheEEECCcHHHHHH
Confidence 2233445555544 348999999999765
No 72
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.03 E-value=0.0028 Score=54.21 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVE 237 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~t 237 (270)
-++.|++.++|+.|++.|+++.++|+........+.+..||..--. .++++..+. ...
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~----~~~~~~~~~------------------~~K 148 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFD----ALASAEKLP------------------YSK 148 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhccc----EEEEcccCC------------------CCC
Confidence 4688999999999999999999999999999999999998763211 122221110 111
Q ss_pred hhhHHHHHHHHhhCC---CEEEEECCcHhhhhh
Q psy885 238 PAHKSKIVEFLQGMN---EISAMDSSTGKTELR 267 (270)
Q Consensus 238 P~~K~~iV~~lq~~g---~~V~miGDG~ND~~a 267 (270)
|.-. -+...+++.| .-++|+||..||+.|
T Consensus 149 p~~~-~~~~~~~~~~~~~~~~~~igDs~~Di~a 180 (222)
T PRK10826 149 PHPE-VYLNCAAKLGVDPLTCVALEDSFNGMIA 180 (222)
T ss_pred CCHH-HHHHHHHHcCCCHHHeEEEcCChhhHHH
Confidence 2211 3334445444 458899999999765
No 73
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.81 E-value=0.0058 Score=53.38 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++.|++.|+++.++|+-....+..+-+.+||..-- ..++++.+...- +-.|
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~F----d~iv~~~~~~~~----------------KP~p 167 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFF----QAVIIGSECEHA----------------KPHP 167 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhC----cEEEecCcCCCC----------------CCCh
Confidence 57899999999999999999999999999999988999986321 123444332111 1123
Q ss_pred hhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
+-=..+.+.+.-....+.|+||..+|+.|
T Consensus 168 ~~~~~a~~~~~~~~~~~l~vgDs~~Di~a 196 (248)
T PLN02770 168 DPYLKALEVLKVSKDHTFVFEDSVSGIKA 196 (248)
T ss_pred HHHHHHHHHhCCChhHEEEEcCCHHHHHH
Confidence 22233333333334568899999999754
No 74
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.80 E-value=0.0094 Score=50.67 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.+.++|+.|++.|+++++.||=....+..+++.+++.
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 47889999999999999999999999999999999999875
No 75
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.78 E-value=0.0068 Score=51.53 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=39.1
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.++.+|+.++++.|++.|+++.++|+-....+..+.+..|+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 479999999999999999999999999999999998888875
No 76
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.77 E-value=0.0081 Score=52.97 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=57.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++-|++.++|+.|++.|+++.++|+.....+..+-+..|+..-.. ..++++.+.. ..-|
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~---d~i~~~~~~~------------------~~KP 159 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRP---DHVVTTDDVP------------------AGRP 159 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCc---eEEEcCCcCC------------------CCCC
Confidence 578999999999999999999999999988877777776643110 1122222110 0112
Q ss_pred hhHHHHHHHHhhCC----CEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMN----EISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g----~~V~miGDG~ND~~a 267 (270)
+...+.+++++.| .-++||||+.+|+.|
T Consensus 160 -~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~a 191 (267)
T PRK13478 160 -YPWMALKNAIELGVYDVAACVKVDDTVPGIEE 191 (267)
T ss_pred -ChHHHHHHHHHcCCCCCcceEEEcCcHHHHHH
Confidence 2233445555543 458999999999754
No 77
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.76 E-value=0.007 Score=49.51 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=33.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++.|++.++++.|++.|+++.++|+-.... ..+...+|+.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~ 124 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR 124 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH
Confidence 688999999999999999999999988777 5555557775
No 78
>PRK06769 hypothetical protein; Validated
Probab=96.66 E-value=0.0091 Score=49.32 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=24.7
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
+.|++.++++.|++.|+++.++|....
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 679999999999999999999998753
No 79
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.63 E-value=0.012 Score=48.92 Aligned_cols=53 Identities=19% Similarity=0.094 Sum_probs=43.8
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHhCCC
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGD-NKATAEAICRRIGVF 199 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD-~~~ta~~iA~~~gi~ 199 (270)
+........-.-++.+++.++++.|++.|+++.++|+- ....+..+-..+|+.
T Consensus 33 ~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~ 86 (174)
T TIGR01685 33 NSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEIT 86 (174)
T ss_pred CCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcC
Confidence 34455556666678999999999999999999999965 888888888888874
No 80
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.61 E-value=0.0093 Score=53.36 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=67.8
Q ss_pred eecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 155 GMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 155 ~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
...+++.+++.++|+.|++.|++++++||-...++..+.+.+|+.... +. .+.|.+. ....+.. .--.
T Consensus 183 ~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~--f~--~i~~~~~-------~~~~~~~-~~~~ 250 (300)
T PHA02530 183 VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIW--FD--DLIGRPP-------DMHFQRE-QGDK 250 (300)
T ss_pred cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCc--hh--hhhCCcc-------hhhhccc-CCCC
Confidence 367899999999999999999999999999999999999998886310 00 1111110 0000000 0002
Q ss_pred ecChhhHHHHHHHHhh-CCCEEEEECCcHhhhhh
Q psy885 235 RVEPAHKSKIVEFLQG-MNEISAMDSSTGKTELR 267 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~-~g~~V~miGDG~ND~~a 267 (270)
+-.|+-+...++.+-. .-..++|+||..+|+.|
T Consensus 251 kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~ 284 (300)
T PHA02530 251 RPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDM 284 (300)
T ss_pred CCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHH
Confidence 4456677777766533 33689999999999765
No 81
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.60 E-value=0.0037 Score=54.35 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred CCchhHHHHHHHH--HhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechh-hcCCCHHHHHHhccCceEEEe
Q psy885 159 PPRKEVFDSIARC--RAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGRE-FDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 159 ~lr~~~~~~I~~l--~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~-~~~l~~~~~~~~~~~~~v~ar 235 (270)
|+.|+..++++.| +..|+.+++||--|...-..+-+.-|+...-. .++|... ++. .. .+.-...+.+-+.+
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~----~I~TNpa~~~~-~G-~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFS----EIFTNPACFDA-DG-RLRVRPYHSHGCSL 144 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccc----eEEeCCceecC-Cc-eEEEeCccCCCCCc
Confidence 5788999999999 56899999999999999899989988863211 1232221 110 00 00000001122333
Q ss_pred cCh-hhHHHHHHHHhhC----C---CEEEEECCcHhh-hhhh
Q psy885 236 VEP-AHKSKIVEFLQGM----N---EISAMDSSTGKT-ELRI 268 (270)
Q Consensus 236 ~tP-~~K~~iV~~lq~~----g---~~V~miGDG~ND-~~ai 268 (270)
+.| .=|..+++.+++. | ..|.+||||.|| ++++
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~ 186 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPAL 186 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCccc
Confidence 334 4799999988764 4 689999999999 5554
No 82
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.58 E-value=0.0096 Score=52.25 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+.+.+.++|+++++.|++++++||=....+..+.+++++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 88999999999999999999999999999999999999874
No 83
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.54 E-value=0.0096 Score=52.58 Aligned_cols=89 Identities=10% Similarity=-0.008 Sum_probs=58.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.+++.++++.|++.|+++.++|+-....+..+-+.+||..-- ..++++.+...- .-.|
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~F----d~ii~~~d~~~~----------------KP~P 168 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFF----SVVLAAEDVYRG----------------KPDP 168 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhC----cEEEecccCCCC----------------CCCH
Confidence 57899999999999999999999999999999988889986321 234444332110 1112
Q ss_pred hhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
+-=...++.+.-....++||||..+|+.|
T Consensus 169 e~~~~a~~~l~~~p~~~l~IgDs~~Di~a 197 (260)
T PLN03243 169 EMFMYAAERLGFIPERCIVFGNSNSSVEA 197 (260)
T ss_pred HHHHHHHHHhCCChHHeEEEcCCHHHHHH
Confidence 21122222232223458889999998654
No 84
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.50 E-value=0.011 Score=50.20 Aligned_cols=86 Identities=20% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++.|++.|++++++|+-....+....+.+|+..-- ..++++.+.. +..|
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f----~~i~~~~~~~------------------~~KP 151 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFF----DAVITSEEEG------------------VEKP 151 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhc----cEEEEeccCC------------------CCCC
Confidence 68899999999999999999999998888888777888875321 1122222211 1223
Q ss_pred hhHHHHHHHHhhCC---CEEEEECCcH-hhhhh
Q psy885 239 AHKSKIVEFLQGMN---EISAMDSSTG-KTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g---~~V~miGDG~-ND~~a 267 (270)
... .+..++++.| ..++||||.. +|+.+
T Consensus 152 ~~~-~~~~~~~~~~~~~~~~~~igDs~~~di~~ 183 (221)
T TIGR02253 152 HPK-IFYAALKRLGVKPEEAVMVGDRLDKDIKG 183 (221)
T ss_pred CHH-HHHHHHHHcCCChhhEEEECCChHHHHHH
Confidence 221 2334444443 4689999997 89644
No 85
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.007 Score=50.24 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=62.3
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE--ec
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS--RV 236 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a--r~ 236 (270)
.++|+.++.++.++..+++++++|+.-.-....+-..++ .......--+++.+..-.. -.++..++- ..
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv--gke~i~~idi~sn~~~ih~-------dg~h~i~~~~ds~ 143 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV--GKERIYCIDIVSNNDYIHI-------DGQHSIKYTDDSQ 143 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc--cccceeeeEEeecCceEcC-------CCceeeecCCccc
Confidence 479999999999999999999999877666665555544 1110000001111000000 000111111 12
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
.-.+|...|+.|++....+.|||||+.|..|
T Consensus 144 fG~dK~~vI~~l~e~~e~~fy~GDsvsDlsa 174 (220)
T COG4359 144 FGHDKSSVIHELSEPNESIFYCGDSVSDLSA 174 (220)
T ss_pred cCCCcchhHHHhhcCCceEEEecCCcccccH
Confidence 3458999999999999999999999999665
No 86
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.39 E-value=0.012 Score=50.70 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=37.2
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
-.+.+++.++++.|++.|+++.++|.-....+...-+..|+.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 133 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD 133 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH
Confidence 367899999999999999999999998888888777778875
No 87
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.39 E-value=0.022 Score=45.48 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=34.2
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~ 196 (270)
..+..+++.++++.|++.|+++.++|+-....+..+.+..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence 3445689999999999999999999999988888777765
No 88
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.37 E-value=0.0096 Score=48.95 Aligned_cols=84 Identities=7% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++|+.|++.|+++.++|+... +..+.+.+|+...- ..++++.+. .+..|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f----~~~~~~~~~------------------~~~kp 142 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYF----DAIVDPAEI------------------KKGKP 142 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhC----cEEEehhhc------------------CCCCC
Confidence 6789999999999999999999997432 34566777775221 112322221 11122
Q ss_pred hhHHHHHHHHhhCC---CEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGMN---EISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~g---~~V~miGDG~ND~~a 267 (270)
. ...+-..+++.+ ..++||||..+|+.|
T Consensus 143 ~-p~~~~~~~~~~~~~~~~~v~vgD~~~di~a 173 (185)
T TIGR01990 143 D-PEIFLAAAEGLGVSPSECIGIEDAQAGIEA 173 (185)
T ss_pred C-hHHHHHHHHHcCCCHHHeEEEecCHHHHHH
Confidence 2 222333444433 459999999999765
No 89
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.35 E-value=0.015 Score=46.64 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=61.3
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
..++.+++.++++.|++.|++++++|+-.......+.+.+|+..--. .++.+.+.... .-
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~----~i~~~~~~~~~----------------Kp 134 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD----EIISSDDVGSR----------------KP 134 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS----EEEEGGGSSSS----------------TT
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccc----cccccchhhhh----------------hh
Confidence 44689999999999999999999999999999999999999873211 23333222111 01
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
.|+-=..+++.+.-....++||||...|+.+
T Consensus 135 ~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~ 165 (176)
T PF13419_consen 135 DPDAYRRALEKLGIPPEEILFVGDSPSDVEA 165 (176)
T ss_dssp SHHHHHHHHHHHTSSGGGEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcceEEEEeCCHHHHHH
Confidence 1222223333343345679999999999654
No 90
>PRK11587 putative phosphatase; Provisional
Probab=96.32 E-value=0.017 Score=49.19 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
++.|++.++++.|++.|+++.++|+.....+..+-+..|+
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l 122 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL 122 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC
Confidence 5789999999999999999999999887666655566666
No 91
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.31 E-value=0.0077 Score=49.54 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
-++.|++.++++.|++.|+++.++|+- ..+..+-+.+|+.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~ 126 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT 126 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH
Confidence 468999999999999999999999986 5566667778875
No 92
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.28 E-value=0.032 Score=45.91 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCC-HHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDN-KATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~-~~ta~~iA~~~gi~ 199 (270)
.+-+++.++++.|++.|+++.++|+-. ...+..+++.+|+.
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 567999999999999999999999987 56677777777764
No 93
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=96.22 E-value=0.04 Score=47.04 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=65.2
Q ss_pred CCchhHHHHHH-HHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceE-EEec
Q psy885 159 PPRKEVFDSIA-RCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARL-FSRV 236 (270)
Q Consensus 159 ~lr~~~~~~I~-~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v-~ar~ 236 (270)
.++|++.++|+ .+++.|++++++|+-....+..+|+..++..... +| |.++..-.. ..+ -..+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~-----~i-~t~le~~~g---------g~~~g~~c 158 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLN-----LI-ASQIERGNG---------GWVLPLRC 158 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCc-----EE-EEEeEEeCC---------ceEcCccC
Confidence 57999999996 7888999999999999999999999976643211 12 222221000 011 1235
Q ss_pred ChhhHHHHHHHH-hhCCCEEEEECCcHhhhhhhc
Q psy885 237 EPAHKSKIVEFL-QGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 237 tP~~K~~iV~~l-q~~g~~V~miGDG~ND~~ai~ 269 (270)
.-+.|..-++.+ .......-+=||..||.+||-
T Consensus 159 ~g~~Kv~rl~~~~~~~~~~~~aYsDS~~D~pmL~ 192 (210)
T TIGR01545 159 LGHEKVAQLEQKIGSPLKLYSGYSDSKQDNPLLA 192 (210)
T ss_pred CChHHHHHHHHHhCCChhheEEecCCcccHHHHH
Confidence 678888877754 322334568899999999874
No 94
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.15 E-value=0.018 Score=48.28 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+-|++.++++.|++.|+++.++|.-... ...+.+.+|+.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~ 144 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL 144 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH
Confidence 57899999999999999999999976554 45566677774
No 95
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.15 E-value=0.039 Score=42.99 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=36.2
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCC--------HHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDN--------KATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~--------~~ta~~iA~~~gi~ 199 (270)
-++.+++.++++.|++.|+++.++|+.. ......+.+.+|+.
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 3578999999999999999999999988 66677777888874
No 96
>KOG4383|consensus
Probab=96.09 E-value=0.02 Score=56.18 Aligned_cols=187 Identities=16% Similarity=0.210 Sum_probs=122.0
Q ss_pred eCChHHHHHhccccccCCeeeeccHHHHHh--------hhccceEEEeecccc--------cce--eCCCCcccccc---
Q psy885 77 KGAPEGVLERCTHARIGSQKVSLKDFSANT--------RFENLRSLEPKSKVS--------AIV--PWGMKPEDMNL--- 135 (270)
Q Consensus 77 KGApe~Il~~c~~~~~~~~~~~l~~~~~~~--------~~~GlRvl~~~~~~~--------a~~--~~~~~~~~~~~--- 135 (270)
-|-.+.+.+.|+.+.++....|++-..+.. ...| .++||+||.. +-| +++.++..-..
T Consensus 697 ~g~ad~~~eACTdfWdGadi~PlSg~dkkkV~DFY~RaclsG-~C~AfaYkP~~caLasqL~GKciEl~~~p~~SkI~T~ 775 (1354)
T KOG4383|consen 697 FGFADFFEEACTDFWDGADIIPLSGRDKKKVKDFYLRACLSG-HCLAFAYKPCFCALASQLAGKCIELPLNPEHSKIETA 775 (1354)
T ss_pred ccHHHHHHHHhhhhcCCceeeecCcchHHHHHHHHHHHhhcc-cchheecccHHHHHHHHhCCceEEeccCcccchhhhh
Confidence 477888999999999988888887554432 3344 5899955532 111 11211100000
Q ss_pred ----------cc-cchh----------------hcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHH
Q psy885 136 ----------AD-STKF----------------ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKAT 188 (270)
Q Consensus 136 ----------~~-~~~~----------------~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~t 188 (270)
+| ...+ .+.-++-+|.|++.+.=..+.++-..|+.|-++.||.+-.+-.+..-
T Consensus 776 celp~sipikqnar~S~~e~Degige~l~~e~c~Qa~sGQIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELk 855 (1354)
T KOG4383|consen 776 CELPHSIPIKQNARESFDEIDEGIGERLADEACDQAFSGQIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELK 855 (1354)
T ss_pred ccCCCCCcchhhhhhhhhhhccccceeccHhHHHHHhccchhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHH
Confidence 00 0011 11224568999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCccc--------------------------------eeeech---------------hhcCCCH-
Q psy885 189 AEAICRRIGVFTEEEDTTG--------------------------------KSYSGR---------------EFDDLPL- 220 (270)
Q Consensus 189 a~~iA~~~gi~~~~~~~~~--------------------------------~~i~G~---------------~~~~l~~- 220 (270)
..-.|.++||-....--++ ...+-. .|..++.
T Consensus 856 SkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsd 935 (1354)
T KOG4383|consen 856 SKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFAAQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSD 935 (1354)
T ss_pred HHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhhccCcchhHHHHHhhhcccccceeehhhcccCCccccccccc
Confidence 9999999998743211000 000000 0011100
Q ss_pred ------------------------HHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcHhh
Q psy885 221 ------------------------SEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKT 264 (270)
Q Consensus 221 ------------------------~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND 264 (270)
++.+...--+-+|..++|+.--+.|+.+|+.|.+|+.+|...|-
T Consensus 936 i~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTDcnpeamcEMIeIMQE~GEVtcclGS~aN~ 1003 (1354)
T KOG4383|consen 936 IAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTDCNPEAMCEMIEIMQENGEVTCCLGSCANA 1003 (1354)
T ss_pred hhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccCCCHHHHHHHHHHHHHcCcEEEEecccccc
Confidence 00111111346899999999999999999999999999998885
No 97
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.05 E-value=0.019 Score=45.93 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=32.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNK---------------ATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~---------------~ta~~iA~~~gi~ 199 (270)
.+.+++.++++.|++.|+++.++|.... .....+.+.+|+.
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999998652 3344556677764
No 98
>PRK11590 hypothetical protein; Provisional
Probab=96.04 E-value=0.063 Score=45.65 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=65.2
Q ss_pred CCchhHHHHH-HHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE-ec
Q psy885 159 PPRKEVFDSI-ARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS-RV 236 (270)
Q Consensus 159 ~lr~~~~~~I-~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a-r~ 236 (270)
.+.|++.++| +.+++.|++++++|+-....+..+++.+|+.... . ++ |.++... ....+.. .+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~-~----~i-~t~l~~~---------~tg~~~g~~c 159 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRV-N----LI-ASQMQRR---------YGGWVLTLRC 159 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccC-c----eE-EEEEEEE---------EccEECCccC
Confidence 5689999999 5788899999999999999999999999963211 1 11 2222110 0012222 26
Q ss_pred ChhhHHHHHHHH-hhCCCEEEEECCcHhhhhhhc
Q psy885 237 EPAHKSKIVEFL-QGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 237 tP~~K~~iV~~l-q~~g~~V~miGDG~ND~~ai~ 269 (270)
..+.|..-++.+ .......-+=||..||.+||-
T Consensus 160 ~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~ 193 (211)
T PRK11590 160 LGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLY 193 (211)
T ss_pred CChHHHHHHHHHhCCCcceEEEecCCcccHHHHH
Confidence 678888877754 323344557899999999873
No 99
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.03 E-value=0.039 Score=45.64 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=24.3
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDN 185 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~ 185 (270)
+.+++.++++.|++.|+++.++|...
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 67999999999999999999999875
No 100
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.98 E-value=0.012 Score=47.35 Aligned_cols=85 Identities=13% Similarity=-0.031 Sum_probs=58.5
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
.-.+||++.++++.|+ .++++.++|.-....+..+-+.+++... +...++++.+..
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~---~f~~i~~~~d~~-------------------- 98 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKY---FGYRRLFRDECV-------------------- 98 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCC---EeeeEEECcccc--------------------
Confidence 3357999999999999 5799999999999999999888887421 111233332221
Q ss_pred ChhhHHHHHHHHhhC---CCEEEEECCcHhhhhh
Q psy885 237 EPAHKSKIVEFLQGM---NEISAMDSSTGKTELR 267 (270)
Q Consensus 237 tP~~K~~iV~~lq~~---g~~V~miGDG~ND~~a 267 (270)
..|-.+.+.++.. ..-+.|+||..+|..|
T Consensus 99 --~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~a 130 (148)
T smart00577 99 --FVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPF 130 (148)
T ss_pred --ccCCeEeecHHHcCCChhcEEEEECCHHHhhc
Confidence 1111144444443 4679999999999765
No 101
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.80 E-value=0.038 Score=43.25 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHhC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGD-NKATAEAICRRIG 197 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD-~~~ta~~iA~~~g 197 (270)
++.+++.++++.|++.|+++.++|+- ....+..+-+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 78999999999999999999999999 7777777666666
No 102
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.80 E-value=0.028 Score=53.67 Aligned_cols=85 Identities=7% Similarity=-0.026 Sum_probs=58.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++.|++.|+++.++|+-....+..+.+.+|+..-- ..++++.+... .-.|
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f----~~i~~~d~v~~-----------------~~kP 388 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWV----TETFSIEQINS-----------------LNKS 388 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhc----ceeEecCCCCC-----------------CCCc
Confidence 68899999999999999999999999999999999999885321 12333333211 1123
Q ss_pred hhHHHHHHHHhhC-CCEEEEECCcHhhhhh
Q psy885 239 AHKSKIVEFLQGM-NEISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g~~V~miGDG~ND~~a 267 (270)
+ -+...+++. -.-+.|+||..+|+.|
T Consensus 389 ~---~~~~al~~l~~~~~v~VGDs~~Di~a 415 (459)
T PRK06698 389 D---LVKSILNKYDIKEAAVVGDRLSDINA 415 (459)
T ss_pred H---HHHHHHHhcCcceEEEEeCCHHHHHH
Confidence 2 122223221 2469999999999765
No 103
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=95.77 E-value=0.045 Score=50.96 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=39.1
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
-++.+|+.++++.|++.|+++.++|+-....+..+-+..||..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~ 257 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG 257 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH
Confidence 3578999999999999999999999999999999989999863
No 104
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=95.77 E-value=0.065 Score=43.87 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
..-|++.+-+..++.+|+++.++|--+..-+...+..+|+. =|+--.-|
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~-------------------------------fi~~A~KP 94 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP-------------------------------FIYRAKKP 94 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc-------------------------------eeecccCc
Confidence 35688999999999999999999999898888999999986 23333344
Q ss_pred hhHHHHHHHHhhCC---CEEEEECCcH
Q psy885 239 AHKSKIVEFLQGMN---EISAMDSSTG 262 (270)
Q Consensus 239 ~~K~~iV~~lq~~g---~~V~miGDG~ 262 (270)
--+ .+-+++++.+ .-|+||||-.
T Consensus 95 ~~~-~fr~Al~~m~l~~~~vvmVGDqL 120 (175)
T COG2179 95 FGR-AFRRALKEMNLPPEEVVMVGDQL 120 (175)
T ss_pred cHH-HHHHHHHHcCCChhHEEEEcchh
Confidence 444 4778887764 5799999954
No 105
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.73 E-value=0.047 Score=48.87 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~ 196 (270)
++.|++.++++.|++.|+++.++|+-.......+-+..
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL 181 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 68899999999999999999999998887777665554
No 106
>PLN02811 hydrolase
Probab=95.68 E-value=0.028 Score=48.02 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHH
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATA 189 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta 189 (270)
-++.+++.++|+.|++.|+++.++||-.....
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~ 108 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHF 108 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhH
Confidence 45789999999999999999999999776533
No 107
>PRK09449 dUMP phosphatase; Provisional
Probab=95.64 E-value=0.044 Score=46.65 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++.+++.++++.|+ .|+++.++|......+...-+..|+.
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR 134 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH
Confidence 47899999999999 68999999998888887777778875
No 108
>PLN02940 riboflavin kinase
Probab=95.64 E-value=0.037 Score=51.65 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR-RIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVE 237 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~-~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~t 237 (270)
++.+++.++++.|++.|+++.|+|+-....+..... ..|+...- ..++++.+.. +..
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~F----d~ii~~d~v~------------------~~K 150 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESF----SVIVGGDEVE------------------KGK 150 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhC----CEEEehhhcC------------------CCC
Confidence 578999999999999999999999998887776554 56764211 1233332211 112
Q ss_pred hhhHHHHHHHHhhC---CCEEEEECCcHhhhhh
Q psy885 238 PAHKSKIVEFLQGM---NEISAMDSSTGKTELR 267 (270)
Q Consensus 238 P~~K~~iV~~lq~~---g~~V~miGDG~ND~~a 267 (270)
| +...+..++++. ...++|+||+.+|+.|
T Consensus 151 P-~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~a 182 (382)
T PLN02940 151 P-SPDIFLEAAKRLNVEPSNCLVIEDSLPGVMA 182 (382)
T ss_pred C-CHHHHHHHHHHcCCChhHEEEEeCCHHHHHH
Confidence 2 112233444443 4568999999999754
No 109
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.63 E-value=0.059 Score=45.57 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
++.+++.++++.|++. +++.++|+-....+..+.+..|+..
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~ 137 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFP 137 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHh
Confidence 5789999999999999 9999999998888888888888853
No 110
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.63 E-value=0.056 Score=49.91 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTG 183 (270)
-++.|++.++++.|++.|+++.|+|.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 35789999999999999999999998
No 111
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=95.52 E-value=0.17 Score=43.78 Aligned_cols=89 Identities=16% Similarity=0.077 Sum_probs=55.3
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHH---HHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEE
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI---CRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLF 233 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~i---A~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ 233 (270)
.-|.-+++.++++.|++.|++|+++||=.......+ -++.|+..- ..+++.+..-..
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~----~~LiLR~~~d~~---------------- 177 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW----KHLILRGLEDSN---------------- 177 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc----CeeeecCCCCCC----------------
Confidence 458889999999999999999999999876542222 234676521 112222110000
Q ss_pred EecChhhHHHHHHHHhhCCC-EEEEECCcHhhhh
Q psy885 234 SRVEPAHKSKIVEFLQGMNE-ISAMDSSTGKTEL 266 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~g~-~V~miGDG~ND~~ 266 (270)
.....-|...-+.+.+.|+ +++.+||-.+|-.
T Consensus 178 -~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 178 -KTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL 210 (229)
T ss_pred -chHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence 0001116666667776665 6778999999953
No 112
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.46 E-value=0.2 Score=44.96 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.-+.+.++|+.|++.||.+++.||=.......+.+++|+.
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 5567899999999999999999999999999999999985
No 113
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.45 E-value=0.066 Score=46.51 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=38.2
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH--HHHHHhCCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAE--AICRRIGVFT 200 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~--~iA~~~gi~~ 200 (270)
|.+.-...+-|++.++++.|+++|+++.++|.-....+. ...+++|+..
T Consensus 17 G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 17 GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred cccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 555566778999999999999999999999985544333 4557788863
No 114
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.22 E-value=0.15 Score=41.97 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=58.6
Q ss_pred cCCCchhHHHHHHHHHhCCCe--EEEEcCC-------CHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhc
Q psy885 157 LDPPRKEVFDSIARCRAAGIR--VIVITGD-------NKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAV 227 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~--v~mlTGD-------~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~ 227 (270)
++.+-++..+.+++|++.+.. ++++|=- +...|..+++.+|+.
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp---------------------------- 108 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP---------------------------- 108 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc----------------------------
Confidence 456788999999999999874 9999865 478899999999985
Q ss_pred cCceEEE-ecChhhHHHHHHHHhhC-----CCEEEEECCc
Q psy885 228 ARARLFS-RVEPAHKSKIVEFLQGM-----NEISAMDSST 261 (270)
Q Consensus 228 ~~~~v~a-r~tP~~K~~iV~~lq~~-----g~~V~miGDG 261 (270)
.+.. ..-|.-..++.+.++.+ -+-++||||=
T Consensus 109 ---vl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDr 145 (168)
T PF09419_consen 109 ---VLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDR 145 (168)
T ss_pred ---EEEeCCCCCccHHHHHHHHhhccCCCCchhEEEEcch
Confidence 3323 35787777889988765 4569999994
No 115
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=95.12 E-value=0.18 Score=41.04 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=60.6
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHh---C--CCCCCCCccceeeec-hhhcCCCHHHHHHhc
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRI---G--VFTEEEDTTGKSYSG-REFDDLPLSEQKAAV 227 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~---~iA~~~---g--i~~~~~~~~~~~i~G-~~~~~l~~~~~~~~~ 227 (270)
.+.+.+++.++++.+++.|++++++||=....+. ....++ | +.. . .++..+ ..+..+.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~--g---~li~~~g~~~~~~~-------- 91 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH--G---PVLLSPDRLFAALH-------- 91 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC--c---eEEEcCCcchhhhh--------
Confidence 4678899999999999999999999998877764 333331 2 221 0 112221 1111111
Q ss_pred cCceEEEecChhhHHHHHHHHhh-----CCCEEEEECCcHhhhhh
Q psy885 228 ARARLFSRVEPAHKSKIVEFLQG-----MNEISAMDSSTGKTELR 267 (270)
Q Consensus 228 ~~~~v~ar~tP~~K~~iV~~lq~-----~g~~V~miGDG~ND~~a 267 (270)
+ .+..+-.-+.|...++.+++ ....++..|++.+|+.|
T Consensus 92 -~-e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~ 134 (157)
T smart00775 92 -R-EVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVIS 134 (157)
T ss_pred -c-ccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHH
Confidence 1 22222223348888887776 35788889999999865
No 116
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.72 E-value=0.28 Score=42.13 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+.+...+..|+++|++|+.+|.-....-...-+.+|+..
T Consensus 26 ~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 26 QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 346788999999999999999998888888889999873
No 117
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=94.61 E-value=0.12 Score=42.32 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCC---------------HHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDN---------------KATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~---------------~~ta~~iA~~~gi~ 199 (270)
++-+++.++|+.|++.|+++.++|--. ......+....|+.
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 84 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII 84 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc
Confidence 367899999999999999999999742 33455566667764
No 118
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.43 E-value=0.067 Score=45.11 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=25.7
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
-++.|++.++++.|++.|+++.++|....
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFP 121 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35789999999999999999999998654
No 119
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.29 E-value=0.18 Score=43.39 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=34.1
Q ss_pred ecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh
Q psy885 156 MLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196 (270)
Q Consensus 156 ~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~ 196 (270)
+.-++.+++.++++.|++.|+++.++|.........+-+..
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 44578999999999999999999999998877666655444
No 120
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=93.97 E-value=0.42 Score=39.29 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.8
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDN 185 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~ 185 (270)
+.|++.++|+.|++.|+++.++|.-.
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999765
No 121
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=93.79 E-value=0.24 Score=40.65 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHH------------HHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKA------------TAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~------------ta~~iA~~~gi~ 199 (270)
+-+++.++++.|++.|+++.++|.-... ....+.+.+|+.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 94 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP 94 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC
Confidence 3499999999999999999999964432 345566777774
No 122
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=93.52 E-value=0.38 Score=43.70 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=57.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH----hCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR----IGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~----~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
++.+++.++|+.|++.|+.+.++|.-....|..+-+. +|+...-. .+
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~---------------------------~~-- 81 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFD---------------------------AR-- 81 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHee---------------------------EE--
Confidence 4589999999999999999999999999999988877 66542100 11
Q ss_pred ecChhhHHHHHHHH-hhC---CCEEEEECCcHhhhhhh
Q psy885 235 RVEPAHKSKIVEFL-QGM---NEISAMDSSTGKTELRI 268 (270)
Q Consensus 235 r~tP~~K~~iV~~l-q~~---g~~V~miGDG~ND~~ai 268 (270)
...+.-|...+..+ ++. -.-++|+||...|+.+.
T Consensus 82 ~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~ 119 (320)
T TIGR01686 82 SINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANV 119 (320)
T ss_pred EEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHH
Confidence 12233455544443 333 36799999999997653
No 123
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=92.80 E-value=0.42 Score=39.32 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=32.7
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++.+++.++++.|+ .+++++|.-....+..+.+..|+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~ 121 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIE 121 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcH
Confidence 47799999999997 579999998888888888888885
No 124
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.64 E-value=1 Score=39.09 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=37.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.+.++|++|++.|+++++.||-....+..+.+++|+.
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 47788999999999999999999999999999999998875
No 125
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=92.55 E-value=1.3 Score=38.55 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.+.++|+++++.|+++++.||=....+..+.+++++.
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 47788999999999999999999999999999999999875
No 126
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.35 E-value=0.48 Score=50.03 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=37.1
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+++.++++.|+++|+++.++|+-....+..+-+..|+.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~ 201 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLP 201 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence 36799999999999999999999999988888888888885
No 127
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=92.21 E-value=0.27 Score=41.72 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=32.0
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
-++.+++.++++.| ++++.++|+.....+..+-+..|+.
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~ 125 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGML 125 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChH
Confidence 45678999999988 5999999999888777776777775
No 128
>PHA02597 30.2 hypothetical protein; Provisional
Probab=92.15 E-value=0.82 Score=37.99 Aligned_cols=85 Identities=8% Similarity=0.080 Sum_probs=47.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++.|++.+ +.+++|.-+..+....-+.+|+..-....... .+.++...
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~----------------------i~~~~~~~ 130 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSE----------------------VLMCGHDE 130 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccE----------------------EEEeccCc
Confidence 47899999999999875 56677764444444344555553210000011 22222222
Q ss_pred hhHHHHHH-HHhhCC-CEEEEECCcHhhhhh
Q psy885 239 AHKSKIVE-FLQGMN-EISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K~~iV~-~lq~~g-~~V~miGDG~ND~~a 267 (270)
. |-+++. ++++.| ..++|+||..+|+.|
T Consensus 131 ~-kp~~~~~a~~~~~~~~~v~vgDs~~di~a 160 (197)
T PHA02597 131 S-KEKLFIKAKEKYGDRVVCFVDDLAHNLDA 160 (197)
T ss_pred c-cHHHHHHHHHHhCCCcEEEeCCCHHHHHH
Confidence 1 233333 344444 458899999999655
No 129
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.81 E-value=0.59 Score=40.36 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
.+-|++.++++.|+.. +..+++|--..+-+..+|.-+|+...
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg 124 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRG 124 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCcc
Confidence 3569999999999865 56677777788899999999999654
No 130
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=91.30 E-value=0.22 Score=40.64 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=37.9
Q ss_pred ecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 156 MLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 156 ~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.=..||++.+.++.|.+. +.+++.|-.....|..+...++..
T Consensus 39 ~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 39 VYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred EEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcC
Confidence 3345799999999999987 999999999999999999988864
No 131
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=91.28 E-value=2.1 Score=36.18 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEE-Eec
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLF-SRV 236 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~-ar~ 236 (270)
..+-+.+.++|+.|+++|+++++.||-....+..+..++++... ....+|.-+..-.. -.++ ...
T Consensus 14 ~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~-----~I~~nGa~i~~~~~---------~~l~~~~i 79 (254)
T PF08282_consen 14 GKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDY-----FICSNGALIDDPKG---------KILYEKPI 79 (254)
T ss_dssp SSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSE-----EEEGGGTEEEETTT---------EEEEEESB
T ss_pred CeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhh-----hcccccceeeeccc---------ccchhhhe
Confidence 34678999999999999999999999999999999999998622 23344444411100 0233 345
Q ss_pred ChhhHHHHHHHHhhCCCEEEEE
Q psy885 237 EPAHKSKIVEFLQGMNEISAMD 258 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~mi 258 (270)
+++.-..+++.+++.+..+.+.
T Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~ 101 (254)
T PF08282_consen 80 DSDDVKKILKYLKEHNISFFFY 101 (254)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEE
T ss_pred eccchhheeehhhhcccccccc
Confidence 6677778888888876544443
No 132
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=91.28 E-value=0.75 Score=38.38 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=59.9
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHH---HHHHhc--cCceEEE
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLS---EQKAAV--ARARLFS 234 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~---~~~~~~--~~~~v~a 234 (270)
+.+++.+++..|+++|++++|+|= |.||... .+++.+|..+... .+...- -....+|
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTN-----------QsGi~rg-------yf~~~~f~~~~~~m~~~l~~~gv~id~i~~C 93 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTN-----------QSGIGRG-------YFTEADFDKLHNKMLKILASQGVKIDGILYC 93 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEEC-----------CCCcccc-------CccHHHHHHHHHHHHHHHHHcCCccceEEEC
Confidence 568999999999999999999995 5566532 3444555443222 111111 1235666
Q ss_pred ecChhh--------HHHHHHHHhhCC---CEEEEECCcHhhhhh
Q psy885 235 RVEPAH--------KSKIVEFLQGMN---EISAMDSSTGKTELR 267 (270)
Q Consensus 235 r~tP~~--------K~~iV~~lq~~g---~~V~miGDG~ND~~a 267 (270)
...|++ ...+.+++++.+ ....||||-..|..+
T Consensus 94 ph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~ 137 (181)
T COG0241 94 PHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQA 137 (181)
T ss_pred CCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHH
Confidence 666664 566777777765 678899999999654
No 133
>KOG3120|consensus
Probab=91.01 E-value=1.4 Score=37.96 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCchhHHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGI-RVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi-~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
|+-|+..++|+.+++.|- .+++||--|...-..+-+..||-
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 567899999999999996 99999999988877777777764
No 134
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=90.90 E-value=1.1 Score=37.49 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=27.7
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAE 190 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~ 190 (270)
++.|++.++++.|++.|+++.++|.-......
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~ 115 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTT 115 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHH
Confidence 57999999999999999999999987655443
No 135
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=90.53 E-value=1.3 Score=38.42 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=54.9
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCCCccceeeechhh-cCCCHHHHHHhccCceEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDN---KATAEAICRRIGVFTEEEDTTGKSYSGREF-DDLPLSEQKAAVARARLF 233 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~---~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~-~~l~~~~~~~~~~~~~v~ 233 (270)
++.=|++.+.++.+++.|++|+.|||=. ...+..=-++.|+...+ .+++.+..- ...
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~----~l~lr~~~~~~~~--------------- 174 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWD----HLILRPDKDPSKK--------------- 174 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBS----CGEEEEESSTSS----------------
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccc----hhccccccccccc---------------
Confidence 4667889999999999999999999843 22333333566765321 122222111 000
Q ss_pred EecChhhHHHHHHHHhhCC-CEEEEECCcHhhhh
Q psy885 234 SRVEPAHKSKIVEFLQGMN-EISAMDSSTGKTEL 266 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~g-~~V~miGDG~ND~~ 266 (270)
...+-|...-+.+++.| ++++++||-.+|..
T Consensus 175 --~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~ 206 (229)
T PF03767_consen 175 --SAVEYKSERRKEIEKKGYRIIANIGDQLSDFS 206 (229)
T ss_dssp -------SHHHHHHHHHTTEEEEEEEESSGGGCH
T ss_pred --cccccchHHHHHHHHcCCcEEEEeCCCHHHhh
Confidence 01234888888888886 56778999999954
No 136
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=90.50 E-value=2.8 Score=36.75 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=38.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.+.++|++|++.|+++++.||=....+..+.+++|+.
T Consensus 19 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 19 HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 47889999999999999999999999999999999999985
No 137
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=90.16 E-value=0.61 Score=39.67 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+.+.++|++|++.|+++++.||=....+..+++.+|+.
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 7789999999999999999999999999999999999975
No 138
>PLN02645 phosphoglycolate phosphatase
Probab=89.78 E-value=0.79 Score=41.45 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=39.5
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHhCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC---RRIGVF 199 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA---~~~gi~ 199 (270)
|++.-.+.+=+++.++|+.|++.|++++++|+....+...++ +.+|+.
T Consensus 37 Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 37 GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 556666677799999999999999999999999977766666 557775
No 139
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=89.37 E-value=0.77 Score=39.51 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=37.5
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+..-+.+.++|+.|++.|++++++||=....+..+++++|+.
T Consensus 14 ~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 14 GYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 445567999999999999999999999999999999999974
No 140
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=89.11 E-value=0.21 Score=37.39 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=35.3
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHhCCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC---RRIGVFT 200 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA---~~~gi~~ 200 (270)
|++...+.+=|++.++|+.|++.|++++++|-....+...++ +.+|+.-
T Consensus 7 Gvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 7 GVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred cEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 445556778899999999999999999999987755544444 5678763
No 141
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=88.54 E-value=6.1 Score=35.17 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=32.3
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHH----HHHHHHHHhCCC
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKA----TAEAICRRIGVF 199 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~----ta~~iA~~~gi~ 199 (270)
..|.=|++.+..+.+++.|++|+.|||=... |..++ ++.|+.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~ 188 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYH 188 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCC
Confidence 5677789999999999999999999997643 33333 245765
No 142
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=88.36 E-value=0.97 Score=39.39 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.-+.+.++|+.|++.|++++++||-....+..+.+++|+.
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3456899999999999999999999999999999999975
No 143
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=88.32 E-value=0.99 Score=39.80 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=38.3
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
..+.+.+.++|+.|++.|++++++||-....+..+++++|+.
T Consensus 20 ~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 20 TYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 346678999999999999999999999999999999999985
No 144
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=88.12 E-value=1.6 Score=35.81 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=32.1
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+-|+ .+++..|++. +++.++|+.....+..+-+..|+..
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~ 127 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRR 127 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHh
Confidence 3454 5889999865 8999999999999999888999853
No 145
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=87.94 E-value=1.2 Score=40.14 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=42.5
Q ss_pred Cc-hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhc
Q psy885 160 PR-KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFD 216 (270)
Q Consensus 160 lr-~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~ 216 (270)
+| |++.++++.|++.|+++.++|+-....+...-+.+||..-- ..+++|.+..
T Consensus 146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF----dvIIs~Gdv~ 199 (301)
T TIGR01684 146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF----DIIISGGHKA 199 (301)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc----CEEEECCccc
Confidence 56 99999999999999999999998888888888999997421 2355555443
No 146
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=87.64 E-value=1.2 Score=40.05 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=36.5
Q ss_pred Cc-hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 160 PR-KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 160 lr-~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+| |++.++++.|+++|+++.++|+.....+..+.+.+|+..
T Consensus 148 irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~ 189 (303)
T PHA03398 148 IRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG 189 (303)
T ss_pred cCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc
Confidence 46 999999999999999999999777788888889999963
No 147
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=87.62 E-value=2.8 Score=37.09 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=35.5
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHH---HHHHhCCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEA---ICRRIGVFT 200 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~---iA~~~gi~~ 200 (270)
|++.-.+.+-+++.++|+.|++.|++++++|+-...+... --+.+|+..
T Consensus 11 Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~ 62 (279)
T TIGR01452 11 GVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG 62 (279)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 4444556677889999999999999999999965333322 235578753
No 148
>PRK10976 putative hydrolase; Provisional
Probab=87.54 E-value=1.1 Score=39.02 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.+.++|+++++.|+++++.||=....+..+.+.+|+.
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 47788999999999999999999999999999999999875
No 149
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=87.08 E-value=1.3 Score=38.78 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+-+.+.++|++|++.|+++++.||=....+..+.+++|+.
T Consensus 20 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 20 TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 57888999999999999999999999999999999999974
No 150
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=86.54 E-value=1.5 Score=37.02 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=37.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.+.++|+.|++.|+.+++.||=....+..+++.+|+.
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 36788899999999999999999999999999999999854
No 151
>PRK10444 UMP phosphatase; Provisional
Probab=86.25 E-value=0.85 Score=39.94 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=41.3
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH---hCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR---IGVF 199 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~---~gi~ 199 (270)
|++.-.+.+-|++.++|+.|++.|++++++|+....+...++++ +|+.
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 66666778889999999999999999999999998888877776 4664
No 152
>PLN02887 hydrolase family protein
Probab=85.83 E-value=5.5 Score=39.35 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=40.9
Q ss_pred EEEeecC-CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 152 GVVGMLD-PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 152 G~i~~~d-~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
|.+.-.| .+-+.+.++|+.+++.|+++++.||=....+..+.+++++.
T Consensus 317 GTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 317 GTLLNSKSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 4444333 48899999999999999999999999999999999999874
No 153
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=85.78 E-value=0.73 Score=39.05 Aligned_cols=30 Identities=10% Similarity=-0.022 Sum_probs=22.3
Q ss_pred hHHHHHHHHhh-C---CCEEEEECCcHhhhhhhc
Q psy885 240 HKSKIVEFLQG-M---NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~-~---g~~V~miGDG~ND~~ai~ 269 (270)
.|..-++.+.+ . ..-|+++||+.||..|+-
T Consensus 179 ~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~ 212 (221)
T TIGR02463 179 SKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLE 212 (221)
T ss_pred CHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHH
Confidence 46666666543 2 356999999999999974
No 154
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=85.52 E-value=1.8 Score=36.61 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+.++|+.|++.|++++++||=....+..+.+.+|+.
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 44889999999999999999999999999999999985
No 155
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=85.39 E-value=1.2 Score=39.02 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=37.4
Q ss_pred EEEeecCC----CchhHHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHHhCCCC
Q psy885 152 GVVGMLDP----PRKEVFDSIARCRAAGIRVIVITGDNKAT---AEAICRRIGVFT 200 (270)
Q Consensus 152 G~i~~~d~----lr~~~~~~I~~l~~agi~v~mlTGD~~~t---a~~iA~~~gi~~ 200 (270)
|.+.-.+. +-|++.++|+.|++.|++++++||....+ .....+.+|+.-
T Consensus 10 Gtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~ 65 (257)
T TIGR01458 10 GVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI 65 (257)
T ss_pred CeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 55555565 78899999999999999999999876655 444445678753
No 156
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=84.19 E-value=2.3 Score=37.11 Aligned_cols=50 Identities=8% Similarity=0.046 Sum_probs=38.9
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcC---CCHHHHHHHHHHhCCCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITG---DNKATAEAICRRIGVFTE 201 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTG---D~~~ta~~iA~~~gi~~~ 201 (270)
|++.-.+.+-+++.++|+.|++.|++++++|| -.........+.+|+...
T Consensus 10 Gtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~ 62 (249)
T TIGR01457 10 GTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT 62 (249)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 44445566678999999999999999999997 456666666777887643
No 157
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=84.18 E-value=2.1 Score=36.95 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
++-|++.++++.|++. +++.++|..+..
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~ 140 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ 140 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch
Confidence 5668999999999975 999999886554
No 158
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=83.59 E-value=0.79 Score=37.17 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
++.|++.++++ ++.++|.-.......+.+..|+...- ..++++.+.. ...|
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~f----d~v~~~~~~~------------------~~KP 140 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYF----DRAFSVDTVR------------------AYKP 140 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHH----hhhccHhhcC------------------CCCC
Confidence 57899999997 36788988888888888888875211 1122222211 1122
Q ss_pred hhH--HHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 239 AHK--SKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 239 ~~K--~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
.-. ....+.+.-...-++||||...|+.+
T Consensus 141 ~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~ 171 (175)
T TIGR01493 141 DPVVYELVFDTVGLPPDRVLMVAAHQWDLIG 171 (175)
T ss_pred CHHHHHHHHHHHCCCHHHeEeEecChhhHHH
Confidence 222 23333333233569999999999754
No 159
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.46 E-value=2.4 Score=37.25 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=36.6
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+-+.+.++|++|++.|+++++.||=....+..+++++|+.
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 4567889999999999999999999999999999999984
No 160
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.41 E-value=4.1 Score=35.87 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=23.6
Q ss_pred hHHHHHHHHhh----CC-CEEEEECCcHhhhhhhc
Q psy885 240 HKSKIVEFLQG----MN-EISAMDSSTGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~----~g-~~V~miGDG~ND~~ai~ 269 (270)
.|..-++.+.+ .. .-|+++||+.||..|+.
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~ 224 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLE 224 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHH
Confidence 67777777653 24 78999999999999874
No 161
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=83.10 E-value=7 Score=32.83 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=35.0
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.=++-+++.++++.++.. +++.++|=-....+....+++||.
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~ 138 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLL 138 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCCh
Confidence 346778899999999988 999999987777778888899965
No 162
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.04 E-value=1.4 Score=38.89 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=26.0
Q ss_pred ecCh--hhHHHHHHHHhh-------CCCEEEEECCcHhhhhhhc
Q psy885 235 RVEP--AHKSKIVEFLQG-------MNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP--~~K~~iV~~lq~-------~g~~V~miGDG~ND~~ai~ 269 (270)
.++| -.|..=++.|.+ ....|+++|||.||..||.
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~ 223 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLD 223 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHH
Confidence 4455 478877777644 2356999999999999984
No 163
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=83.00 E-value=7.9 Score=35.69 Aligned_cols=99 Identities=10% Similarity=0.114 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh-CCCCCCC---Cccceeeech----------hhcCCCHH----H
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI-GVFTEEE---DTTGKSYSGR----------EFDDLPLS----E 222 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~-gi~~~~~---~~~~~~i~G~----------~~~~l~~~----~ 222 (270)
-|++.++++.|+++|+++.++|.-....+..+.+.+ |-..... ..-..++++. .|..+..+ .
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~~~ 265 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGSLK 265 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCccc
Confidence 579999999999999999999999999999988885 6111000 0112333333 12111110 0
Q ss_pred HHH--hccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcH
Q psy885 223 QKA--AVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTG 262 (270)
Q Consensus 223 ~~~--~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ 262 (270)
... .+++..||+.-+-.+ +-+.+.-.+..|+++||-+
T Consensus 266 ~~~~~~l~~g~vY~gGn~~~---~~~~l~~~~~~vlYvGD~i 304 (343)
T TIGR02244 266 WGEVDGLEPGKVYSGGSLKQ---FHELLKWRGKEVLYFGDHI 304 (343)
T ss_pred CCccccccCCCeEeCCCHHH---HHHHHCCCCCcEEEECCcc
Confidence 000 134556777666543 4445556788999999954
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=82.96 E-value=4.7 Score=40.89 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHhC
Q psy885 159 PPRKEVFDSIARCRA-AGIRVIVITGDNKATAEAICRRIG 197 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~-agi~v~mlTGD~~~ta~~iA~~~g 197 (270)
.+-+++.++|+.|.+ .|+.|+++||-............+
T Consensus 514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~ 553 (726)
T PRK14501 514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLP 553 (726)
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 367899999999999 699999999999988877655444
No 165
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=80.78 E-value=4.1 Score=39.76 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCH------------HHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNK------------ATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~------------~ta~~iA~~~gi~ 199 (270)
+-+++.+.|+.|++.|++++|+|-=.. ..+..+.+++|+.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip 249 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP 249 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc
Confidence 469999999999999999999996333 3355667777763
No 166
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=80.07 E-value=1.2 Score=37.68 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=24.0
Q ss_pred hhHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 239 AHKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
..|..-++.+.+. | .-|+++||+.||..|+.
T Consensus 148 ~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~ 182 (225)
T TIGR01482 148 VNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFE 182 (225)
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHH
Confidence 3777778777543 3 46999999999999874
No 167
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=78.99 E-value=2.2 Score=37.17 Aligned_cols=30 Identities=10% Similarity=-0.098 Sum_probs=21.9
Q ss_pred hHHHHHHHHhhC------CCEEEEECCcHhhhhhhc
Q psy885 240 HKSKIVEFLQGM------NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~~------g~~V~miGDG~ND~~ai~ 269 (270)
.|..-++.+.+. ..-|.++||+.||..|+.
T Consensus 176 ~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~ 211 (256)
T TIGR01486 176 DKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLE 211 (256)
T ss_pred CHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHH
Confidence 566666665432 456999999999999974
No 168
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=77.70 E-value=1.3 Score=38.73 Aligned_cols=31 Identities=16% Similarity=-0.056 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 239 AHKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
-.|..=++.|.+. | .-|+++|||.||..||.
T Consensus 195 vsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~ 229 (270)
T PRK10513 195 VNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIE 229 (270)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHH
Confidence 3788888877653 3 46999999999999974
No 169
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=77.43 E-value=1.3 Score=37.58 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=25.6
Q ss_pred ecChhh--HHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 235 RVEPAH--KSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP~~--K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
...|.. |..-++.+.+. | .-++++||+.||..|+.
T Consensus 150 ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~ 190 (230)
T PRK01158 150 HIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFE 190 (230)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHH
Confidence 445544 88878877543 3 45999999999999873
No 170
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=77.05 E-value=1.4 Score=38.61 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=27.2
Q ss_pred ecChh--hHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 235 RVEPA--HKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP~--~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
.++|. .|..=++.|.+. | .-|+++|||-||..||.
T Consensus 181 eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~ 221 (272)
T PRK15126 181 EVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLG 221 (272)
T ss_pred EeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHH
Confidence 45554 599888888654 4 46999999999999984
No 171
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=76.78 E-value=2.4 Score=36.44 Aligned_cols=32 Identities=13% Similarity=-0.070 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHhhC------CCEEEEECCcHhhhhhhc
Q psy885 238 PAHKSKIVEFLQGM------NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 238 P~~K~~iV~~lq~~------g~~V~miGDG~ND~~ai~ 269 (270)
...|..-++.+.+. ...|.++||+.||..||-
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~ 216 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFE 216 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHH
Confidence 45677777766432 225899999999999984
No 172
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=76.32 E-value=8.3 Score=31.77 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=31.6
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVIT-GDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlT-GD~~~ta~~iA~~~gi~ 199 (270)
.+-|+++.+++.|+..|+++.+.| -|.+..|..+-+.++|.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 357999999999999999999999 58899999999999997
No 173
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=75.72 E-value=2.7 Score=35.00 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 239 AHKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
..|...++.+.++ | ..|.++||+.||..|+.
T Consensus 162 ~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~ 196 (204)
T TIGR01484 162 VDKGSALQALLKELNGKRDEILAFGDSGNDEEMFE 196 (204)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHH
Confidence 6888888887654 3 46999999999988863
No 174
>PRK10976 putative hydrolase; Provisional
Probab=75.14 E-value=1.5 Score=38.22 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=26.3
Q ss_pred ecChh--hHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 235 RVEPA--HKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP~--~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
.++|. .|..=++.|.+. | .-|+++|||.||..||.
T Consensus 183 eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~ 223 (266)
T PRK10976 183 EVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLS 223 (266)
T ss_pred EEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHH
Confidence 44554 588888887553 4 45999999999999984
No 175
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=74.51 E-value=2.7 Score=36.39 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhC----CCEEEEECCcHhhhhhhc
Q psy885 239 AHKSKIVEFLQGM----NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 239 ~~K~~iV~~lq~~----g~~V~miGDG~ND~~ai~ 269 (270)
-.|..-++.|.+. ...|.++||+.||..|+.
T Consensus 166 ~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~ 200 (249)
T TIGR01485 166 SGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFE 200 (249)
T ss_pred CChHHHHHHHHHHcCCCccCEEEEECChhHHHHHH
Confidence 3677778887653 357999999999999874
No 176
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=74.36 E-value=1.8 Score=37.69 Aligned_cols=30 Identities=7% Similarity=-0.203 Sum_probs=22.5
Q ss_pred hHHHHHHHHhh-CC---CEEEEECCcHhhhhhhc
Q psy885 240 HKSKIVEFLQG-MN---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~-~g---~~V~miGDG~ND~~ai~ 269 (270)
.|..-++.+.+ .| .-|+++||+.||..|+.
T Consensus 199 ~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~ 232 (272)
T PRK10530 199 SKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLE 232 (272)
T ss_pred ChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHH
Confidence 48877776543 34 45999999999999874
No 177
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=73.00 E-value=5 Score=31.41 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=27.5
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHH
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKAT 188 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~t 188 (270)
+++.+++.++++.+++.|+.++++||=....
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 6788999999999999999999999976554
No 178
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=72.13 E-value=1.9 Score=36.93 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 240 HKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
.|..-++.|.++ | .-|+++||+.||..|+.
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~ 192 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLR 192 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHc
Confidence 788888888653 3 25889999999999874
No 179
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=72.12 E-value=2.6 Score=35.60 Aligned_cols=32 Identities=9% Similarity=-0.027 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHhhC----CCEEEEECCcHhhhhhhc
Q psy885 238 PAHKSKIVEFLQGM----NEISAMDSSTGKTELRIF 269 (270)
Q Consensus 238 P~~K~~iV~~lq~~----g~~V~miGDG~ND~~ai~ 269 (270)
.-.|..-++.|.+. ..-++++||+.||..|+-
T Consensus 184 ~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~ 219 (254)
T PF08282_consen 184 GVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLE 219 (254)
T ss_dssp TSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHH
T ss_pred CCCHHHHHHHHhhhcccccceeEEeecccccHhHHh
Confidence 35899888888652 357899999999999873
No 180
>PTZ00445 p36-lilke protein; Provisional
Probab=71.49 E-value=6.2 Score=33.82 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=25.7
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
-.++|+....+..|+++||++.++|=-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 347999999999999999999999965443
No 181
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=70.08 E-value=5.9 Score=34.32 Aligned_cols=37 Identities=14% Similarity=-0.082 Sum_probs=27.6
Q ss_pred EEEecChhhHHHHHHHHhhC----CCEEEEECCcHhhhhhh
Q psy885 232 LFSRVEPAHKSKIVEFLQGM----NEISAMDSSTGKTELRI 268 (270)
Q Consensus 232 v~ar~tP~~K~~iV~~lq~~----g~~V~miGDG~ND~~ai 268 (270)
+-.+-.+.+|...++.+.+. ...++|+||+.||..|+
T Consensus 159 ~e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~ 199 (244)
T TIGR00685 159 VELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAF 199 (244)
T ss_pred EEEeeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHH
Confidence 33345566899888887543 34799999999998876
No 182
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=69.88 E-value=2.7 Score=36.67 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=23.7
Q ss_pred hhHHHHHHHHhhC-C---CEEEEECCcHhhhhhh
Q psy885 239 AHKSKIVEFLQGM-N---EISAMDSSTGKTELRI 268 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai 268 (270)
..|..-|+.|+++ + ..|.++||+-||..||
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL 197 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML 197 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH
Confidence 4699999998765 2 3577799999999887
No 183
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=69.84 E-value=15 Score=31.35 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=45.2
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhc
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFD 216 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~ 216 (270)
.++.+++.++++.|+..|+.+.+.|+-....+..+....|+...-. .++++.+..
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~----~~v~~~dv~ 139 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFD----VIVTADDVA 139 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcc----hhccHHHHh
Confidence 4789999999999999999999999999889999999999875432 345555554
No 184
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=69.64 E-value=2.8 Score=36.34 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=26.6
Q ss_pred ecChh--hHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 235 RVEPA--HKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP~--~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
..+|. .|..-++.+.+. | ..++++||+.||+.|+.
T Consensus 181 eI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~ 221 (256)
T TIGR00099 181 EITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLE 221 (256)
T ss_pred EecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHH
Confidence 44444 588888888654 3 46999999999999874
No 185
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=69.22 E-value=29 Score=31.40 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=38.5
Q ss_pred EEEeecCCCchhHHHHHHHHHhC----CCeEEEEcCCC---HHH-HHHHHHHhCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAA----GIRVIVITGDN---KAT-AEAICRRIGVF 199 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~a----gi~v~mlTGD~---~~t-a~~iA~~~gi~ 199 (270)
|++.-.+++-+++.++++.|+.. |+++..+|=-. ..+ +..+.+.+|+.
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 77778889999999999999998 99999998443 333 55566778875
No 186
>PTZ00174 phosphomannomutase; Provisional
Probab=68.74 E-value=3.6 Score=35.69 Aligned_cols=31 Identities=10% Similarity=-0.116 Sum_probs=26.9
Q ss_pred hhHHHHHHHHhhCCCEEEEECC----cHhhhhhhc
Q psy885 239 AHKSKIVEFLQGMNEISAMDSS----TGKTELRIF 269 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~miGD----G~ND~~ai~ 269 (270)
-.|..=|+.|.+...-|+++|| |-||..||.
T Consensus 187 vsKg~al~~L~~~~~eviafGD~~~~~~NDieMl~ 221 (247)
T PTZ00174 187 WDKTYCLRHLENDFKEIHFFGDKTFEGGNDYEIYN 221 (247)
T ss_pred CcHHHHHHHHHhhhhhEEEEcccCCCCCCcHhhhh
Confidence 4799888888777778999999 999999984
No 187
>KOG3040|consensus
Probab=68.69 E-value=14 Score=31.66 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=44.0
Q ss_pred eEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH---HhCCCCC
Q psy885 148 LTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR---RIGVFTE 201 (270)
Q Consensus 148 l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~---~~gi~~~ 201 (270)
+.+-|.+-++|-.-|++.++++.|+.++.+|.-+|--..++-..+.+ .||+.-.
T Consensus 12 lDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~ 68 (262)
T KOG3040|consen 12 LDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVS 68 (262)
T ss_pred EeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCcc
Confidence 34569999999999999999999999999999998777666666654 4677543
No 188
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=67.38 E-value=9.8 Score=29.08 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIR-VIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~-v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+.+.+.+++|.+.|++ +|+.+|.....+...|++.||.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 667889999999999995 7999999999999999998884
No 189
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=67.38 E-value=11 Score=30.42 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=37.2
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.=.+||++.+.++.|.+. +++.+.|.-....|..+.+.++..
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcC
Confidence 334799999999999955 999999999999999999998765
No 190
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=66.62 E-value=8.2 Score=34.32 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.2
Q ss_pred EEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q psy885 150 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR 195 (270)
Q Consensus 150 ~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~ 195 (270)
+=|++.--+.+=|++.++|+.|+++|++++.||=-...+...++.+
T Consensus 15 lDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~ 60 (269)
T COG0647 15 LDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAAR 60 (269)
T ss_pred CcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 3488888999999999999999999999999998877777755544
No 191
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=66.02 E-value=16 Score=30.31 Aligned_cols=38 Identities=24% Similarity=0.530 Sum_probs=34.6
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~ 196 (270)
++.+.+.++|++|++.|++++++||=....+..+.+.+
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 46789999999999999999999999999999988874
No 192
>PTZ00174 phosphomannomutase; Provisional
Probab=64.96 E-value=13 Score=32.27 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=29.0
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~i 192 (270)
.+.+.+.++|+.+++.|+++++.||-........
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~ 55 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQ 55 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 4778899999999999999999999887755443
No 193
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=64.92 E-value=6.5 Score=34.67 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 239 AHKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 239 ~~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
..|..-|+.+.+. | ..|.++||+.||..|+.
T Consensus 173 ~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~ 207 (266)
T PRK10187 173 TNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFA 207 (266)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHH
Confidence 3888888876543 3 56899999999988874
No 194
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.45 E-value=49 Score=26.14 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=38.9
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhCCC--eEEEEcCCC------HHHHHHHHHHhCCC
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGI--RVIVITGDN------KATAEAICRRIGVF 199 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi--~v~mlTGD~------~~ta~~iA~~~gi~ 199 (270)
+.+-.++|+-++.-.--+..+++++.|+++|+ .++|+-|-- ...-..-++++|+.
T Consensus 50 ~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 50 ETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred HcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 45677888888887778889999999999997 345566631 11123456889975
No 195
>PLN02382 probable sucrose-phosphatase
Probab=63.40 E-value=7.1 Score=36.88 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.1
Q ss_pred ecChh--hHHHHHHHHhhC----C---CEEEEECCcHhhhhhhc
Q psy885 235 RVEPA--HKSKIVEFLQGM----N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 235 r~tP~--~K~~iV~~lq~~----g---~~V~miGDG~ND~~ai~ 269 (270)
.+.|. .|..-++.|.+. | ..|.++||+.||..||-
T Consensus 168 dI~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~ 211 (413)
T PLN02382 168 DVLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFS 211 (413)
T ss_pred EEEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHh
Confidence 34443 588888887654 3 47899999999999874
No 196
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=63.31 E-value=22 Score=29.78 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=54.8
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCH----HHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEe
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNK----ATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~----~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar 235 (270)
+++=+++.|.--++.|=.++.+||-.+ .++..+|+...|..... ++|+.
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~p---------------------------v~f~G 167 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNP---------------------------VIFAG 167 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcc---------------------------eeecc
Confidence 677788899988899999999999764 45666777777754321 56665
Q ss_pred cChh-hHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 236 VEPA-HKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 236 ~tP~-~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
-.|. .+..-..++|+.+ +-..-||.-||+.|
T Consensus 168 dk~k~~qy~Kt~~i~~~~-~~IhYGDSD~Di~A 199 (237)
T COG3700 168 DKPKPGQYTKTQWIQDKN-IRIHYGDSDNDITA 199 (237)
T ss_pred CCCCcccccccHHHHhcC-ceEEecCCchhhhH
Confidence 5541 1222334566655 45678999999876
No 197
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=63.20 E-value=15 Score=35.09 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh-CCCCCC----CCccceeeech----------hhcCCC-------
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI-GVFTEE----EDTTGKSYSGR----------EFDDLP------- 219 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~-gi~~~~----~~~~~~~i~G~----------~~~~l~------- 219 (270)
|.++..++.|+++|.++.++|.-.-..+..+..-+ |-...+ .+.-..||++. .|..+.
T Consensus 186 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l~ 265 (448)
T PF05761_consen 186 PKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKLK 265 (448)
T ss_dssp CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSEE
T ss_pred chHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCccc
Confidence 68999999999999999999999988888877654 331111 11122344332 111110
Q ss_pred HHHHHHhccCceEEEecChhhHHHHHHHHhhCCCEEEEECCcH
Q psy885 220 LSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTG 262 (270)
Q Consensus 220 ~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ 262 (270)
.......+.+..||+.-+-.+=. +.+...|..|+.+||.+
T Consensus 266 ~~~~~~~l~~g~vY~gGn~~~l~---~ll~~~g~~VLY~GDhi 305 (448)
T PF05761_consen 266 WGKYVGPLEKGKVYSGGNWDQLH---KLLGWRGKEVLYFGDHI 305 (448)
T ss_dssp CS---SS--TC-EEEE--HHHHH---HHCT--GGGEEEEESST
T ss_pred cccccccccCCCEeecCCHHHHH---HHHccCCCeEEEECCch
Confidence 01112234556788887766433 34455588999999975
No 198
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=62.44 E-value=28 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=37.1
Q ss_pred EEeecCCCchhHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHhCCC
Q psy885 153 VVGMLDPPRKEVFDSIARCRAAGIRVIV-ITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 153 ~i~~~d~lr~~~~~~I~~l~~agi~v~m-lTGD~~~ta~~iA~~~gi~ 199 (270)
++.+.+..++.+....+.|++.|+++.+ ..+.+......-|...|+.
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3445667788899999999999999988 5666677777778888865
No 199
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=61.74 E-value=11 Score=32.55 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
.+..+.+.++++.+++.|+.++++||=.......+.+++++..+
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p 63 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTP 63 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCC
Confidence 45678999999999999999999999999999999998987654
No 200
>PTZ00445 p36-lilke protein; Provisional
Probab=61.37 E-value=23 Score=30.37 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
..++.+...++.|++.||+++++-=|+-..+...+ |...+... ...+...+||
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~------------------------~~~~~~~~tp 78 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSG---GYIDPDND------------------------DIRVLTSVTP 78 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcc------------------------hhhhhccCCH
Confidence 46788889999999999999999888776665433 23322100 0156667888
Q ss_pred hhHHHHHHHHhhCCCEEEEE
Q psy885 239 AHKSKIVEFLQGMNEISAMD 258 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~mi 258 (270)
+-|. +++.+++.|-.|+.+
T Consensus 79 efk~-~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 79 DFKI-LGKRLKNSNIKISVV 97 (219)
T ss_pred HHHH-HHHHHHHCCCeEEEE
Confidence 8887 577787777655543
No 201
>PLN02887 hydrolase family protein
Probab=57.89 E-value=5.6 Score=39.33 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhC-C---CEEEEECCcHhhhhhhc
Q psy885 240 HKSKIVEFLQGM-N---EISAMDSSTGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~~-g---~~V~miGDG~ND~~ai~ 269 (270)
.|..=++.|.+. | .-|+++|||.||..||-
T Consensus 507 SKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe 540 (580)
T PLN02887 507 SKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQ 540 (580)
T ss_pred CHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHH
Confidence 788888877553 3 35999999999999984
No 202
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=56.99 E-value=20 Score=36.14 Aligned_cols=40 Identities=5% Similarity=0.188 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.-+.+.++|+.|+++|+.+++.||-....+..+++++|+.
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 4457899999999999999999999999999999999863
No 203
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=56.19 E-value=63 Score=31.40 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=52.6
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH-hCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEe---
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR-IGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSR--- 235 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~-~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar--- 235 (270)
+++++.+.+ ++.|- ++++|+-....+..+|++ +|+.. +-|.++..- .+...-.+
T Consensus 111 l~~~a~~~~---~~~g~-~vvVSASp~~~Vepfa~~~LGid~---------VIgTeLev~---------~~G~~TG~i~g 168 (497)
T PLN02177 111 VHPETWRVF---NSFGK-RYIITASPRIMVEPFVKTFLGADK---------VLGTELEVS---------KSGRATGFMKK 168 (497)
T ss_pred cCHHHHHHH---HhCCC-EEEEECCcHHHHHHHHHHcCCCCE---------EEecccEEC---------cCCEEeeeecC
Confidence 677765544 56675 499999999999999987 78862 112222100 00012222
Q ss_pred ---cChhhHHHHHHHHhhCCCEEEEECCcHhhhhhhc
Q psy885 236 ---VEPAHKSKIVEFLQGMNEISAMDSSTGKTELRIF 269 (270)
Q Consensus 236 ---~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ai~ 269 (270)
+.-++|..-++..........+-||..||..+|-
T Consensus 169 ~~~c~Ge~Kv~rl~~~~g~~~~~~aYgDS~sD~plL~ 205 (497)
T PLN02177 169 PGVLVGDHKRDAVLKEFGDALPDLGLGDRETDHDFMS 205 (497)
T ss_pred CCCCccHHHHHHHHHHhCCCCceEEEECCccHHHHHH
Confidence 2345677777643321122367999999988763
No 204
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=56.01 E-value=24 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=35.5
Q ss_pred ccCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcC
Q psy885 144 YEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 144 ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTG 183 (270)
+-.+..-++++++++.+...+..+.+.|+++|++|+-+--
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 3456677999999999999999999999999999998854
No 205
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=55.70 E-value=35 Score=24.37 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEEeecC---CCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 152 GVVGMLD---PPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 152 G~i~~~d---~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|+.
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4555666 67788889999999999999887 666677777888888876
No 206
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=55.68 E-value=17 Score=32.00 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=34.3
Q ss_pred CCchhHHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 159 PPRKEVFDSIARCRA-AGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~-agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
.+-+.+.++|+.|++ .|+.++++||-.......+.+.+++
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~ 76 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRF 76 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccc
Confidence 455889999999998 7999999999999999888776653
No 207
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=55.03 E-value=97 Score=24.74 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+.+.=+.|++.|+..+++.||....-..+++++|+.
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 90 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT 90 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES
T ss_pred HHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC
Confidence 44556666778889999999999888888999999976
No 208
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=54.81 E-value=77 Score=27.58 Aligned_cols=27 Identities=4% Similarity=0.054 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
-+++.++++.|+..++++.+.|+....
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~ 148 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRY 148 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 478888999999989999999876543
No 209
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=54.57 E-value=52 Score=29.56 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHH-HHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEA-ICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~-iA~~~gi~ 199 (270)
+++...-+.|+..|.+++++|......+.. ..+.+++.
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~ 101 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQ 101 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhC
Confidence 577778888999999999999887666653 44555554
No 210
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=53.36 E-value=68 Score=29.08 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.|+..++.++ +..+|+=|....+...+|+..+++
T Consensus 90 ~DTArVLsr~----~D~I~~R~~~~~~ve~lA~~s~VP 123 (310)
T COG0078 90 KDTARVLSRM----VDAIMIRGFSHETLEELAKYSGVP 123 (310)
T ss_pred HHHHHHHHhh----hheEEEecccHHHHHHHHHhCCCc
Confidence 3444555555 455889999999999999999987
No 211
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=52.37 E-value=44 Score=23.01 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=35.2
Q ss_pred EEeecCCCchhHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHhCCC
Q psy885 153 VVGMLDPPRKEVFDSIARCRAAGIRVIVIT-GDNKATAEAICRRIGVF 199 (270)
Q Consensus 153 ~i~~~d~lr~~~~~~I~~l~~agi~v~mlT-GD~~~ta~~iA~~~gi~ 199 (270)
++.+.+..++.+.+....|+++|+++.+.. +.+..-....|...|+.
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~ 53 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGAR 53 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCC
Confidence 444566677888889999999999998754 34667777778777763
No 212
>PLN02423 phosphomannomutase
Probab=50.05 E-value=14 Score=32.18 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhCCCEEEEECC----cHhhhhhhc
Q psy885 240 HKSKIVEFLQGMNEISAMDSS----TGKTELRIF 269 (270)
Q Consensus 240 ~K~~iV~~lq~~g~~V~miGD----G~ND~~ai~ 269 (270)
.|..=++.|+ ...-|++.|| |-||..||.
T Consensus 189 nKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~ 221 (245)
T PLN02423 189 DKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFE 221 (245)
T ss_pred CHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHh
Confidence 7999999998 6678999999 999999985
No 213
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.70 E-value=26 Score=25.00 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=26.4
Q ss_pred EEEeecCCC-chhHHHHHHHHHhCCCeEEEEcCCC
Q psy885 152 GVVGMLDPP-RKEVFDSIARCRAAGIRVIVITGDN 185 (270)
Q Consensus 152 G~i~~~d~l-r~~~~~~I~~l~~agi~v~mlTGD~ 185 (270)
-.++++-+- ++....+++.|+++|+++.++|.+.
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCCH
Confidence 345566565 7889999999999999998766653
No 214
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=49.59 E-value=1.4e+02 Score=24.26 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=62.1
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH---h-----CCCCCCCCccceeeechh-hcCCCHHHHHHhcc
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR---I-----GVFTEEEDTTGKSYSGRE-FDDLPLSEQKAAVA 228 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~---~-----gi~~~~~~~~~~~i~G~~-~~~l~~~~~~~~~~ 228 (270)
|-.++++.++.+.+++.|++++=+|+=..--|..+-.- . ++... .+.++... +..+..
T Consensus 26 d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~G-----pv~~sP~~l~~al~r-------- 92 (157)
T PF08235_consen 26 DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDG-----PVLLSPDSLFSALHR-------- 92 (157)
T ss_pred hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCC-----CEEECCcchhhhhhc--------
Confidence 68999999999999999999999999775444433222 2 33211 11222111 111111
Q ss_pred CceEEEecChhhHHHHHHHHhhC-----CCEEEEECCcHhhhhh
Q psy885 229 RARLFSRVEPAHKSKIVEFLQGM-----NEISAMDSSTGKTELR 267 (270)
Q Consensus 229 ~~~v~ar~tP~~K~~iV~~lq~~-----g~~V~miGDG~ND~~a 267 (270)
.+..+-.-+.|...++.++.. ...++.-|...+|+.|
T Consensus 93 --Evi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~a 134 (157)
T PF08235_consen 93 --EVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIA 134 (157)
T ss_pred --cccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHH
Confidence 344555667888888888764 4678889999999865
No 215
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=48.43 E-value=16 Score=36.71 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCchhHHHHHHHHHhCCCe--E--------EEEcCCCHHHHHHHHHHhCCCCCC-------CCccceeeechhhcCCCHH
Q psy885 159 PPRKEVFDSIARCRAAGIR--V--------IVITGDNKATAEAICRRIGVFTEE-------EDTTGKSYSGREFDDLPLS 221 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~--v--------~mlTGD~~~ta~~iA~~~gi~~~~-------~~~~~~~i~G~~~~~l~~~ 221 (270)
-.++.+.+.++.+++ ++. + +-+++....+...++...|+.... .......+.|+.- .+ +
T Consensus 511 l~~e~i~~IL~~lke-~l~~~i~ihv~~~~~~i~~~~d~~~~ei~~~TgL~~~~a~~a~~Re~seKIl~~gd~e-~L--e 586 (694)
T PRK14502 511 MAYKDIRHILKKALA-EACTEIENSEKAGNIFITSFGDMSVEDVSRLTDLNLKQAELAKQREYSETVHIEGDKR-ST--N 586 (694)
T ss_pred CCHHHHHHHHHHHHH-hhcceeeeeeccCcEEEecCCcccHHHHHHhhCCCHHHHHHHhhccCceeEEEcCCHH-HH--H
Confidence 345667888888877 332 1 235666665566666666664211 0111223333211 00 1
Q ss_pred HHHHhcc--C-----ceEEEecC-hhhHHHHHHHHhhC-----CCEEEE-ECCcHhhhhhhc
Q psy885 222 EQKAAVA--R-----ARLFSRVE-PAHKSKIVEFLQGM-----NEISAM-DSSTGKTELRIF 269 (270)
Q Consensus 222 ~~~~~~~--~-----~~v~ar~t-P~~K~~iV~~lq~~-----g~~V~m-iGDG~ND~~ai~ 269 (270)
++.+.+. . ..-|..+. --+|..-|+.|.+. +.++++ +|||.||..||-
T Consensus 587 el~~~L~~~~l~v~~g~rfleI~~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe 648 (694)
T PRK14502 587 IVLNHIQQSGLEYSFGGRFYEVTGGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLE 648 (694)
T ss_pred HHHHHHHHcCcEEEECCEEEEeCCCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHH
Confidence 1111111 1 11222222 55898888888654 233332 499999999984
No 216
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.91 E-value=45 Score=25.17 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
--+++.++++.+++.|++++.+|++.. -...|.+-|.
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~ 91 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGV 91 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCC
Confidence 457788999999999999999999874 2234554443
No 217
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=47.74 E-value=79 Score=27.59 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDN 185 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~ 185 (270)
++-+++.|+.++++||.+. ||+.
T Consensus 40 ~~~l~eki~la~~~~V~v~--~GGt 62 (237)
T TIGR03849 40 RDIVKEKIEMYKDYGIKVY--PGGT 62 (237)
T ss_pred HHHHHHHHHHHHHcCCeEe--CCcc
Confidence 3457888999999988776 8873
No 218
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=47.72 E-value=60 Score=28.46 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=33.0
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEE 202 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~ 202 (270)
.+|+++.+.++.|++.+|.+.|+|+--......+-++.|...++
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~N 133 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPN 133 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999988777777777777877654
No 219
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.52 E-value=64 Score=25.44 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=51.0
Q ss_pred hhccceEEEeecccccceeCCCCcccccccccchhhcccCCeEEEEEEeecCCCchhHHHHHHHHHhCCC-eE-EEEcCC
Q psy885 107 RFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGI-RV-IVITGD 184 (270)
Q Consensus 107 ~~~GlRvl~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi-~v-~mlTGD 184 (270)
...|++|+-++..+ ...++ ...-.+.+-.++|+-.+.-...+.+++.++.|++.|. .+ +++-|-
T Consensus 28 r~~G~eVi~LG~~v-p~e~i-------------~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 28 TEAGFEVINLGVMT-SQEEF-------------IDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred HHCCCEEEECCCCC-CHHHH-------------HHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 57899999982222 10000 0112255677889888888999999999999999966 34 444442
Q ss_pred C------HHHHHHHHHHhCCC
Q psy885 185 N------KATAEAICRRIGVF 199 (270)
Q Consensus 185 ~------~~ta~~iA~~~gi~ 199 (270)
- ..-....++++|+.
T Consensus 94 ~~~~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 94 LVVGKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred CCCCccChHHHHHHHHHcCCC
Confidence 2 23344567888864
No 220
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=47.36 E-value=22 Score=30.52 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.1
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEc---CCCHHHHH-HHHHHhCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVIT---GDNKATAE-AICRRIGVF 199 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlT---GD~~~ta~-~iA~~~gi~ 199 (270)
|++.-.+.+=+++.++|+.+++.|++++++| |-...... .+.+..|+.
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD 58 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4455556667799999999999999999998 55544443 343336664
No 221
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=47.18 E-value=18 Score=29.27 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHhCCCeEEEEcC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTG 183 (270)
-++++++|+.|.+.|++++|+|=
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTN 53 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTN 53 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE
T ss_pred chhHHHHHHHHHhcCCeEEEEeC
Confidence 45799999999999999999983
No 222
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=46.67 E-value=33 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+-..+.|..|+++|+.|+=++.|...+-..+-+++||..
T Consensus 196 ~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~~ 234 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGISE 234 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCCC
Confidence 556788999999999999999999999999999999963
No 223
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=45.47 E-value=1.8e+02 Score=24.27 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHhCCC
Q psy885 185 NKATAEAICRRIGVF 199 (270)
Q Consensus 185 ~~~ta~~iA~~~gi~ 199 (270)
+.+.+..+|+.+||.
T Consensus 46 ~~e~~~~~A~~lgip 60 (194)
T cd01994 46 NHELLELQAEAMGIP 60 (194)
T ss_pred CHHHHHHHHHHcCCc
Confidence 456667777777765
No 224
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.72 E-value=52 Score=29.53 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=22.8
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.-|.-+||.-=.++++.+.- .|..|+++|-+.
T Consensus 134 ~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~ 167 (286)
T PRK14184 134 PGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSN 167 (286)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 44778888876666666542 388999999763
No 225
>PLN02591 tryptophan synthase
Probab=44.71 E-value=1.4e+02 Score=26.17 Aligned_cols=26 Identities=4% Similarity=-0.011 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhhCCCEEEEECCcHh
Q psy885 238 PAHKSKIVEFLQGMNEISAMDSSTGK 263 (270)
Q Consensus 238 P~~K~~iV~~lq~~g~~V~miGDG~N 263 (270)
|.+=..+++.+++....-.++|-|++
T Consensus 174 ~~~~~~~i~~vk~~~~~Pv~vGFGI~ 199 (250)
T PLN02591 174 SGRVESLLQELKEVTDKPVAVGFGIS 199 (250)
T ss_pred chhHHHHHHHHHhcCCCceEEeCCCC
Confidence 44445666667665556666777777
No 226
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=44.70 E-value=31 Score=30.69 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=33.5
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhCCCe-EEEEcCCCHH
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIR-VIVITGDNKA 187 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~-v~mlTGD~~~ 187 (270)
+.++..+--+...|.-|......+..++.+||+ +.++|||.+.
T Consensus 68 ~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~ 111 (287)
T PF02219_consen 68 ETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPK 111 (287)
T ss_dssp HTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TST
T ss_pred HhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 457888999999999999999999999999995 7889999753
No 227
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.49 E-value=50 Score=29.82 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=27.8
Q ss_pred CCCHHHHHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 217 DLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 217 ~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.++...+.++...-.-|.-+||.-=.++++.+.- .|..|+++|-+.
T Consensus 121 Gl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~ 168 (297)
T PRK14186 121 GLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSI 168 (297)
T ss_pred cCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 3333333333333234667888877777776642 489999999763
No 228
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=44.14 E-value=2e+02 Score=25.36 Aligned_cols=82 Identities=9% Similarity=0.013 Sum_probs=47.7
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHH----HHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEe
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKAT----AEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~t----a~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar 235 (270)
+=||+.+.++...+.|.+|.-+|--..++ ...--++.||.....+ ..+|-+
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~-------------------------~~llkk 177 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLES-------------------------HLLLKK 177 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccccccc-------------------------ceEEee
Confidence 45889999999999999999887644433 2222345666533221 122222
Q ss_pred cChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 236 VEPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 236 ~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
. -.-|..--+.+++--.+|+.+||-.+|=..
T Consensus 178 ~-~k~Ke~R~~~v~k~~~iVm~vGDNl~DF~d 208 (274)
T COG2503 178 D-KKSKEVRRQAVEKDYKIVMLVGDNLDDFGD 208 (274)
T ss_pred C-CCcHHHHHHHHhhccceeeEecCchhhhcc
Confidence 1 122333333344445678889999988543
No 229
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.85 E-value=1.2e+02 Score=31.06 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=37.5
Q ss_pred hCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhhCC
Q psy885 173 AAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMN 252 (270)
Q Consensus 173 ~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~g 252 (270)
..|-++++.+ |+...+..+|+.+|.. .|...+++.++..+++.+++.+
T Consensus 494 ~~g~kiLVF~-~~~~~l~~~a~~L~~~-------------------------------~I~G~ts~~ER~~il~~Fr~~~ 541 (732)
T TIGR00603 494 QRGDKIIVFS-DNVFALKEYAIKLGKP-------------------------------FIYGPTSQQERMQILQNFQHNP 541 (732)
T ss_pred hcCCeEEEEe-CCHHHHHHHHHHcCCc-------------------------------eEECCCCHHHHHHHHHHHHhCC
Confidence 3667777777 5567788888887643 6778889999999999998654
Q ss_pred C
Q psy885 253 E 253 (270)
Q Consensus 253 ~ 253 (270)
.
T Consensus 542 ~ 542 (732)
T TIGR00603 542 K 542 (732)
T ss_pred C
Confidence 3
No 230
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.99 E-value=56 Score=29.32 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=22.4
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.-|.-+||.-=.++++...- .|..|+++|-+.
T Consensus 134 ~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~ 167 (284)
T PRK14170 134 DSFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSN 167 (284)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 34677888776666665532 488999999763
No 231
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=41.97 E-value=1.7e+02 Score=24.90 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCH-----HHHHHHHHHhCC
Q psy885 164 VFDSIARCRAAGIRVIVITGDNK-----ATAEAICRRIGV 198 (270)
Q Consensus 164 ~~~~I~~l~~agi~v~mlTGD~~-----~ta~~iA~~~gi 198 (270)
...++..+++.|+. .+++||+. .....++..+|+
T Consensus 75 l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl 113 (218)
T TIGR03679 75 LKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGL 113 (218)
T ss_pred HHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCC
Confidence 44555555555655 44566663 333355555555
No 232
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=41.58 E-value=69 Score=27.65 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=51.1
Q ss_pred HHHHhCCCeE----EEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhcc-----CceEEEecChh
Q psy885 169 ARCRAAGIRV----IVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVA-----RARLFSRVEPA 239 (270)
Q Consensus 169 ~~l~~agi~v----~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~-----~~~v~ar~tP~ 239 (270)
.-|+.+|..| .++++.-...+..++..+|..+.- -++++..+.+ +.+.|.||+..
T Consensus 78 iilR~~g~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~y----------------veedl~~i~kGalnGRfhpCGRCh~~ 141 (255)
T COG1365 78 IILRWAGFTVDPGTAILPDHIRRNKEELETLLGEVPEY----------------VEEDLEDIEKGALNGRFHPCGRCHSM 141 (255)
T ss_pred HHHHhhceeeccccccCCHHHhHHHHHHHHHHccCHHH----------------HHHHHHHHHhhhccCCCCCcchHHHH
Confidence 3466666543 233444455666666666665321 1222333333 77999999998
Q ss_pred hHHHHHHHHhhCCCEEEEECCcH
Q psy885 240 HKSKIVEFLQGMNEISAMDSSTG 262 (270)
Q Consensus 240 ~K~~iV~~lq~~g~~V~miGDG~ 262 (270)
--..+....++.+--|++.||+.
T Consensus 142 I~~~V~~k~re~di~~vafGDlL 164 (255)
T COG1365 142 IENAVMDKARELDIDVVAFGDLL 164 (255)
T ss_pred HHHHHHHHHHhcCCeEEEEcccc
Confidence 88888888899999999999975
No 233
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=41.34 E-value=58 Score=29.56 Aligned_cols=38 Identities=45% Similarity=0.549 Sum_probs=30.3
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
+.+.|.+|.. +.|+.+|++|.+|.++|--...-++..|
T Consensus 161 V~vLdRpRH~--~lI~eiR~~Gari~Li~DGDVa~ai~~~ 198 (319)
T PRK09479 161 VVVLDRPRHE--ELIAEIREAGARVKLISDGDVAGAIATA 198 (319)
T ss_pred EEEEcCchHH--HHHHHHHHcCCeEEEeccccHHHHHHHh
Confidence 5567777775 7899999999999999976666666655
No 234
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=41.23 E-value=71 Score=22.39 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
...+.+....+.|++.|+++.+- ++.+..-...-|...|+.
T Consensus 15 ~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~ 56 (94)
T cd00738 15 EAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVP 56 (94)
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCC
Confidence 45677777888899999988884 456677777777777764
No 235
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=41.13 E-value=59 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=29.0
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
+.+.|.+|.. +.|+.+|++|.+|.++|--...-|+..|
T Consensus 158 V~vLdRpRH~--~lI~eiR~~GarI~Li~DGDVa~ai~~~ 195 (321)
T PRK12388 158 MVTLDKPRLS--AAIEEATQLGVKVFALPDGDVAASVLTC 195 (321)
T ss_pred EEEEcCchHH--HHHHHHHHcCCeEEEeccccHHHHHHHh
Confidence 4566777765 7899999999999999865555555544
No 236
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=40.82 E-value=2.4e+02 Score=25.20 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=28.5
Q ss_pred ecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 156 MLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 156 ~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+.||-. ..++.++++||+|.+|-|= ....+.+-.+|+..
T Consensus 98 I~dpg~----~Lv~~~~~~gi~v~vIPGi--SA~~aA~a~sG~~~ 136 (287)
T PRK14994 98 INDPGY----HLVRTCREAGIRVVPLPGP--CAAITALSAAGLPS 136 (287)
T ss_pred eeCCHH----HHHHHHHHCCCCEEEeCCH--HHHHHHHHHcCCCC
Confidence 666655 6678888999999999994 44444555678863
No 237
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=40.72 E-value=81 Score=27.82 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=43.2
Q ss_pred cCCeEEEEEEee---cCCCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 145 EVNLTFVGVVGM---LDPPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 145 e~~l~~lG~i~~---~d~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
.-++..+|++.. .+|--.++.++++.+++.|++++.. +.-+..++..+|+++|+.
T Consensus 187 ~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~ 245 (282)
T cd01017 187 RYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAK 245 (282)
T ss_pred HCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCc
Confidence 346777787765 4455567788899999999998877 666778999999999974
No 238
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.63 E-value=82 Score=28.00 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=42.1
Q ss_pred CCeEEEEEEee---cCCCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 146 VNLTFVGVVGM---LDPPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 146 ~~l~~lG~i~~---~d~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
-++..++++.+ .+|--.+..++++.+++.|++++.. .+-+...+..+|+++|+.
T Consensus 194 yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 194 YGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred cCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 46777887776 3344456678888999999998766 666788899999999985
No 239
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=40.03 E-value=64 Score=29.20 Aligned_cols=38 Identities=37% Similarity=0.470 Sum_probs=29.4
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
+.+.|.+|.. +.|+.+|++|.+|.+++--...-|+..|
T Consensus 158 V~vLdRpRH~--~lI~eiR~~Gari~Li~DGDV~~ai~~~ 195 (309)
T cd01516 158 VVVLDRPRHA--ALIEEIREAGARIKLIPDGDVAAAIATA 195 (309)
T ss_pred EEEEcCchHH--HHHHHHHHcCCeEEEeccccHHHHHHHh
Confidence 4566777765 7899999999999999865565565554
No 240
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=39.68 E-value=39 Score=25.55 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=24.2
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKAT 188 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~t 188 (270)
--+++.++++.+++.|++++.+|+.....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34778899999999999999999976433
No 241
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=39.54 E-value=44 Score=29.56 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=35.1
Q ss_pred CCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEE-EEcCCCH
Q psy885 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVI-VITGDNK 186 (270)
Q Consensus 146 ~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~-mlTGD~~ 186 (270)
.++..+--+...|.-|.+..+.+..++.+||+-+ .+|||.+
T Consensus 57 ~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 57 TGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred cCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 3667778888889899999999999999999754 4999988
No 242
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.90 E-value=97 Score=27.51 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.7
Q ss_pred CCeEEEEEEeec---CCCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 146 VNLTFVGVVGML---DPPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 146 ~~l~~lG~i~~~---d~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
-++..++++.+. .|--.++.++++.+++.+++++.. +.-+..++..||++.|+.
T Consensus 196 ~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~ 253 (286)
T cd01019 196 YGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAK 253 (286)
T ss_pred cCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCce
Confidence 356777777654 344455668999999999999777 666889999999999974
No 243
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=38.56 E-value=2.1e+02 Score=23.14 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=17.5
Q ss_pred HHHHHhhCCCEEEEECCcHhhhh
Q psy885 244 IVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 244 iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
+.+..++.|..+.++|.-.+|..
T Consensus 91 l~~~a~~~g~~~i~~Gh~~~D~~ 113 (189)
T TIGR02432 91 FEEIAKKHGADYILTAHHADDQA 113 (189)
T ss_pred HHHHHHHcCCCEEEEcCccHHHH
Confidence 44445667888999999999954
No 244
>PLN02363 phosphoribosylanthranilate isomerase
Probab=37.85 E-value=83 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=10.8
Q ss_pred EEEEcCCCHHHHHHHHHHhCC
Q psy885 178 VIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 178 v~mlTGD~~~ta~~iA~~~gi 198 (270)
|.++..+.......+++++++
T Consensus 103 VgVfv~~~~~~I~~~~~~~~l 123 (256)
T PLN02363 103 VGVFVDDDANTILRAADSSDL 123 (256)
T ss_pred EEEEeCCCHHHHHHHHHhcCC
Confidence 444445555555555555554
No 245
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=37.65 E-value=73 Score=28.90 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=28.9
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
+.+.|.+|.. +.|+.+|++|.+|.++|--...-++..|
T Consensus 158 V~vLdRpRH~--~lI~eiR~~Gari~Li~DGDVa~ai~~~ 195 (321)
T TIGR00330 158 VTILAKPRHD--AVIAEMQQLGVRVFAIPDGDVAASILTC 195 (321)
T ss_pred EEEEcCchHH--HHHHHHHHcCCeEEEeccccHHHHHHHh
Confidence 4566777765 7899999999999999865565555544
No 246
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=37.09 E-value=2.8e+02 Score=24.13 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhc-------cCceEEEecC
Q psy885 165 FDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAV-------ARARLFSRVE 237 (270)
Q Consensus 165 ~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~-------~~~~v~ar~t 237 (270)
.+.++.+.+.|.++.++ |..+.++...++.+.-.- ++-+-|..--....++.+.++ .+..+.+=-+
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y------~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQW------NVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHh------CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 45566677788999998 666777666666543211 111222211222222222222 3456666667
Q ss_pred hhhHHHHHHHHhhCCCEEEE
Q psy885 238 PAHKSKIVEFLQGMNEISAM 257 (270)
Q Consensus 238 P~~K~~iV~~lq~~g~~V~m 257 (270)
|.|=..+-+..+..+..|.+
T Consensus 168 PkQE~~~~~~~~~~~~~v~~ 187 (243)
T PRK03692 168 PKQEIFMRDCRLVYPDALYM 187 (243)
T ss_pred cHHHHHHHHHHHhCCCCEEE
Confidence 88777665544444444443
No 247
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.95 E-value=1.2e+02 Score=23.03 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=40.4
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhCCC-eEE-EEcCCCHHHHHHHHHHhCCC
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGI-RVI-VITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi-~v~-mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+-.++++-+......+.+++.++.|++.|. ++. ++-|-.+.--..-.++.|+.
T Consensus 48 ~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 48 QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC
Confidence 45677888888888999999999999999977 544 44554443334556688975
No 248
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=36.95 E-value=97 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=10.5
Q ss_pred HhCCCeEEEEcCCCHHHHHHHHHHh
Q psy885 172 RAAGIRVIVITGDNKATAEAICRRI 196 (270)
Q Consensus 172 ~~agi~v~mlTGD~~~ta~~iA~~~ 196 (270)
+..|+.++.||-|....+...+++.
T Consensus 54 ~~~~~~vv~is~d~~~~~~~~~~~~ 78 (140)
T cd03017 54 KALGAVVIGVSPDSVESHAKFAEKY 78 (140)
T ss_pred HHCCCEEEEEcCCCHHHHHHHHHHh
Confidence 3334444444444444444444333
No 249
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=36.67 E-value=77 Score=28.89 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=29.7
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
+.+.|.+|.. +.|+.+|++|.++.+++--...-|+..|
T Consensus 159 V~vLdRpRH~--~lI~eir~~Gari~Li~DGDV~~ai~~~ 196 (322)
T PRK12415 159 VIVQERERHQ--DIIDRVRAKGARVKLFGDGDVGASIATA 196 (322)
T ss_pred EEEEcCchHH--HHHHHHHHcCCeEEEeccccHHHHHHHh
Confidence 5567888875 7899999999999999865565555544
No 250
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=36.63 E-value=45 Score=29.37 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=36.4
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCe-EEEEcCCCHHH
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIR-VIVITGDNKAT 188 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~-v~mlTGD~~~t 188 (270)
++..+--+...|.-+.+..+.+..++.+||+ +.++|||.+..
T Consensus 58 g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~ 100 (274)
T cd00537 58 GIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKG 100 (274)
T ss_pred CCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCC
Confidence 4667788888899999999999999999996 88889998754
No 251
>PRK15108 biotin synthase; Provisional
Probab=36.59 E-value=2.7e+02 Score=25.54 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=14.5
Q ss_pred EecChhhHHHHHHHHhhCCCEEE
Q psy885 234 SRVEPAHKSKIVEFLQGMNEISA 256 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~g~~V~ 256 (270)
..-+.+++.+.++..++.|..|.
T Consensus 166 ~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 166 TTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred CCCCHHHHHHHHHHHHHcCCcee
Confidence 34466777777777777665443
No 252
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=36.50 E-value=48 Score=26.21 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.7
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~g 197 (270)
+||++.+.++.|.+. +.++|.|.-....|..+.+.+.
T Consensus 37 ~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 37 LRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp E-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT
T ss_pred eCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh
Confidence 399999999999554 9999999999999999999887
No 253
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=36.41 E-value=40 Score=28.95 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHH
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATA 189 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta 189 (270)
-+++.++++.|++.|++. ++|......+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~ 167 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGIN 167 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEecc
Confidence 478888999888889987 6676544333
No 254
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=36.37 E-value=53 Score=32.14 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=31.2
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
-.+++...|+.+++.|+++++ ||. ++..+|++.|+.
T Consensus 130 ~~~e~~~~~~~l~~~G~~~vi--G~~--~~~~~A~~~gl~ 165 (526)
T TIGR02329 130 TEEDARSCVNDLRARGIGAVV--GAG--LITDLAEQAGLH 165 (526)
T ss_pred CHHHHHHHHHHHHHCCCCEEE--CCh--HHHHHHHHcCCc
Confidence 357899999999999999887 776 567899999996
No 255
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=36.16 E-value=85 Score=21.22 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=9.2
Q ss_pred HHHhCCCeEEEEcCCC
Q psy885 170 RCRAAGIRVIVITGDN 185 (270)
Q Consensus 170 ~l~~agi~v~mlTGD~ 185 (270)
.|+..|+++..++|+.
T Consensus 2 ~L~~~~~~~~~i~~~~ 17 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDM 17 (78)
T ss_dssp HHHHTTSSEEEESTTS
T ss_pred ChHHCCCcEEEEECCC
Confidence 4555666666666643
No 256
>KOG2882|consensus
Probab=35.92 E-value=70 Score=28.91 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=40.1
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH---HhCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR---RIGVF 199 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~---~~gi~ 199 (270)
|++...+.+=|++.++++.|+.+|-+++.+|--...+-...++ ++|+.
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 8888899999999999999999998899998877666665544 46765
No 257
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.90 E-value=3.1e+02 Score=24.78 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCc
Q psy885 223 QKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSST 261 (270)
Q Consensus 223 ~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG 261 (270)
+.++...-..|.-+||.-=.++++...- .|..|+++|-|
T Consensus 128 ~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s 168 (301)
T PRK14194 128 VGGLSQGRDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRS 168 (301)
T ss_pred hhHHhcCCCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence 3333333345777888876666666532 48999999997
No 258
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=35.83 E-value=2e+02 Score=27.00 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+.+.=+.|++.|+..++..|+.......++++.++.
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~ 98 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR 98 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC
Confidence 55566667888999999999999999999999999886
No 259
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=35.73 E-value=32 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCC--------HHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDN--------KATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~--------~~ta~~iA~~~gi~ 199 (270)
++-+++.++++.|.+.|..+++||+=. ..|..-+.+.+|.+
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i 121 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFI 121 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHH
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCC
Confidence 467899999999999998888777533 35555677776644
No 260
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.40 E-value=66 Score=22.74 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=28.4
Q ss_pred CCchhHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIARCRAAGIRVIV-ITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~m-lTGD~~~ta~~iA~~~gi~ 199 (270)
...+.+.+....|+++|+++.+ ..+++...-..-|...|+.
T Consensus 15 ~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~ 56 (94)
T cd00861 15 VQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIP 56 (94)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCC
Confidence 3556677777888888888877 3455666666667667664
No 261
>PF03320 FBPase_glpX: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; InterPro: IPR004464 Gluconeogenesis is an important metabolic pathway, which produces glucose from noncarbohydrate precursors such as organic acids, fatty acids, amino acids, or glycerol. Fructose-1,6-bisphosphatase, a key enzyme of gluconeogenesis, is found in all organisms, and five different classes of these enzymes have been identified. This entry represents the class 2 fructose-1,6-bisphosphatases, which include GlpX and YggF of Escherichia coli (strain K12), which show different catalytic properties. The crystal structure of GlpX has been determined in a free state and in the complex with a substrate (fructose 1,6-bisphosphate) or inhibitor (phosphate). The crystal structure of the ligand-free GlpX revealed a compact, globular shape with two alpha/beta-sandwich domains. The core fold of GlpX is structurally similar to that of Li+-sensitive phosphatases suggesting that they have a common evolutionary origin and catalytic mechanism. The structure of the GlpX complex with fructose 1,6-bisphosphate revealed that the active site is located between two domains and accommodates several conserved residues coordinating two metal ions and the substrate. A third metal ion is bound to phosphate 6 of the substrate. Inorganic phosphate strongly inhibited activity of both GlpX and YggF, and the crystal structure of the GlpX complex with phosphate demonstrated that the inhibitor molecule binds to the active site. Alanine replacement mutagenesis of GlpX identifies 12 conserved residues important for activity and suggested that Thr(90) is the primary catalytic residue []. A number of the proteins in this entry, particularly those from algae are bi functional and can catalyzes the hydrolysis of fructose 1,6-bisphosphate and sedoheptulose 1,7-bisphosphate to fructose 6-phosphate and sedoheptulose 7-phosphate, respectively. ; GO: 0006071 glycerol metabolic process; PDB: 3RPL_C 3ROJ_A 3D1R_A 2R8T_A 3BIH_A 3BIG_A 1NI9_A.
Probab=35.30 E-value=46 Score=30.09 Aligned_cols=38 Identities=42% Similarity=0.528 Sum_probs=27.1
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
+.+.|.+|.. +.|+++|++|.+|.+++--...-|+..|
T Consensus 158 V~vLdRpRH~--~lI~eiR~~Garv~Li~DGDVa~ai~~~ 195 (309)
T PF03320_consen 158 VVVLDRPRHE--ELIEEIREAGARVKLISDGDVAGAIATA 195 (309)
T ss_dssp EEEE-SGGGH--HHHHHHHHCT-EEEEESS-HHHHHHHTT
T ss_pred EEEEcCchHH--HHHHHHHHcCCeEEEeCcCcHHHHHHHh
Confidence 5567877775 7899999999999999866565555544
No 262
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=35.19 E-value=1.2e+02 Score=27.41 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCeEEEEEEeecC---CCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 146 VNLTFVGVVGMLD---PPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 146 ~~l~~lG~i~~~d---~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
-++..+|.+.... |--.+..++++.+++.++++++. +.-+..++..||+++|..
T Consensus 220 ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~ 277 (311)
T PRK09545 220 YGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVR 277 (311)
T ss_pred CCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCe
Confidence 3566777776544 44456667999999999999886 566788999999999964
No 263
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.13 E-value=2.9e+02 Score=23.65 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=11.4
Q ss_pred HHHHhCCCeEEEEcCCC
Q psy885 169 ARCRAAGIRVIVITGDN 185 (270)
Q Consensus 169 ~~l~~agi~v~mlTGD~ 185 (270)
+.+++.|+.+.+++.++
T Consensus 28 ~~a~~~g~~~~~~~~~~ 44 (283)
T cd06279 28 EVLDAAGVNLLLLPASS 44 (283)
T ss_pred HHHHHCCCEEEEecCcc
Confidence 44666777777776665
No 264
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=34.75 E-value=33 Score=25.00 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.9
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
.-.++|+ +=+-+++....++.|++.|+.++=+|+|..
T Consensus 50 a~vlvgi---~v~~~~~~~~l~~~L~~~gy~~~dls~ne~ 86 (91)
T PF00585_consen 50 ARVLVGI---EVPDAEDLEELIERLKALGYPYEDLSDNEL 86 (91)
T ss_dssp SEEEEEE---E-SSTHHHHHHHHHHTSSS-EEECTTT-HH
T ss_pred eeEEEEE---EeCCHHHHHHHHHHHHHcCCCeEECCCCHH
Confidence 3445554 445567789999999999999999998743
No 265
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=34.58 E-value=98 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHhCC
Q psy885 164 VFDSIARCRAAGI-RVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 164 ~~~~I~~l~~agi-~v~mlTGD~~~ta~~iA~~~gi 198 (270)
..+..+.+++.|+ .|+.+|.|......+.+++.++
T Consensus 53 ~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 53 YVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 3456788889999 5999999999999989988887
No 266
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=34.25 E-value=3.4e+02 Score=25.51 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=45.4
Q ss_pred HHHHHhCCCeEEEEcCCCH----------HHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhc----cCceEE
Q psy885 168 IARCRAAGIRVIVITGDNK----------ATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAV----ARARLF 233 (270)
Q Consensus 168 I~~l~~agi~v~mlTGD~~----------~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~----~~~~v~ 233 (270)
++.++.-.|-+...|||.. .++..|+..+++. +++.|..-.....+-++..+ .+-.+.
T Consensus 149 V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vP--------LIL~gsg~~~kD~eVLeaaLe~~~G~kpLL 220 (389)
T TIGR00381 149 VKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVP--------IVIGGSGNPEKDPLVLEKAAEVAEGERCLL 220 (389)
T ss_pred HHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCC--------EEEeCCCCCcCCHHHHHHHHHHhCCCCcEE
Confidence 3445555556666677644 2333344444443 45555422222333333222 222566
Q ss_pred EecChh-hHHHHHHHHhhCCCEEEEEC-CcHhhh
Q psy885 234 SRVEPA-HKSKIVEFLQGMNEISAMDS-STGKTE 265 (270)
Q Consensus 234 ar~tP~-~K~~iV~~lq~~g~~V~miG-DG~ND~ 265 (270)
+-.+.+ .=..+.+..++.|+.|++-+ |..|.+
T Consensus 221 ~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 221 ASANLDLDYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred EecCchhhHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 666666 44445556677777666555 777764
No 267
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=34.22 E-value=1.2e+02 Score=23.11 Aligned_cols=43 Identities=21% Similarity=0.439 Sum_probs=28.0
Q ss_pred cCCCchhHHHHHHHHHhCCCeE---EEEcCCCHHHHHH------HHHHhCCC
Q psy885 157 LDPPRKEVFDSIARCRAAGIRV---IVITGDNKATAEA------ICRRIGVF 199 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v---~mlTGD~~~ta~~------iA~~~gi~ 199 (270)
...+++++++-++.|+..|+.+ ++..||++.+... .|+++||.
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~ 60 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIE 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCc
Confidence 3456788999999999998875 4557998776554 57788886
No 268
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.78 E-value=1.4e+02 Score=23.27 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=41.9
Q ss_pred ccCCeEEEEEEeecCCCchhHHHHHHHHHhCCC-eEEEEcC-CCHHHHHHHHHHhCCC
Q psy885 144 YEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGI-RVIVITG-DNKATAEAICRRIGVF 199 (270)
Q Consensus 144 ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi-~v~mlTG-D~~~ta~~iA~~~gi~ 199 (270)
.+.+-.++|+-++...--+.++++++.|+++|. .+.++-| -.+..-..--+++|+.
T Consensus 50 ~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 50 VEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred HHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 366788999999999999999999999999987 4444445 3444334556778885
No 269
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=33.73 E-value=2.6e+02 Score=22.75 Aligned_cols=34 Identities=3% Similarity=0.020 Sum_probs=22.4
Q ss_pred EEeecCCCchh-HHHHHHHHHhCCCe-EEEEcCCCH
Q psy885 153 VVGMLDPPRKE-VFDSIARCRAAGIR-VIVITGDNK 186 (270)
Q Consensus 153 ~i~~~d~lr~~-~~~~I~~l~~agi~-v~mlTGD~~ 186 (270)
.+.|.|-+.++ +..++..|++.|++ +.-++|.+.
T Consensus 9 ~LTFDDgp~~~~t~~~l~~L~~~~ikaTfFv~g~~~ 44 (191)
T TIGR02764 9 ALTFDISWGNDYTEPILDTLKEYDVKATFFLSGSWA 44 (191)
T ss_pred EEEEECCCCcccHHHHHHHHHHcCCCEEEEeccHHH
Confidence 34566666653 56778888888886 456666654
No 270
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=33.56 E-value=2e+02 Score=21.41 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=33.7
Q ss_pred EEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 153 VVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 153 ~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++.+.|.-|++..+..+.|...|+++. .|+. ||..+.+ .|+.
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~-AT~g---Ta~~L~~-~Gi~ 44 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLF-ATGG---TSRVLAD-AGIP 44 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEE-ECcH---HHHHHHH-cCCc
Confidence 577888999999999999999999996 5653 6666653 7765
No 271
>KOG1250|consensus
Probab=33.16 E-value=2.6e+02 Score=26.50 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhCCC--eEEEEcCCCHHHHHHH-HHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChh
Q psy885 163 EVFDSIARCRAAGI--RVIVITGDNKATAEAI-CRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPA 239 (270)
Q Consensus 163 ~~~~~I~~l~~agi--~v~mlTGD~~~ta~~i-A~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~ 239 (270)
++..++..|-..+- .|+-.|+.|...|.+. |+++|+... .|.-..||.
T Consensus 100 Ga~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~LgipaT-----------------------------IVmP~~tp~ 150 (457)
T KOG1250|consen 100 GAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPAT-----------------------------IVMPVATPL 150 (457)
T ss_pred hHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCceE-----------------------------EEecCCChH
Confidence 67777877776653 4566688787776654 588999743 677788999
Q ss_pred hHHHHHHHHhhCCCEEEEECCcHhhhh
Q psy885 240 HKSKIVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 240 ~K~~iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
.|.+ .+|+.|..|...|+-.--+-
T Consensus 151 ~kiq---~~~nlGA~Vil~G~~~deAk 174 (457)
T KOG1250|consen 151 MKIQ---RCRNLGATVILSGEDWDEAK 174 (457)
T ss_pred HHHH---HHhccCCEEEEecccHHHHH
Confidence 8864 56677999999998765443
No 272
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=32.96 E-value=3.1e+02 Score=23.30 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHhCCC
Q psy885 183 GDNKATAEAICRRIGVF 199 (270)
Q Consensus 183 GD~~~ta~~iA~~~gi~ 199 (270)
+.....+..+|+.+|+.
T Consensus 42 ~~~~~~~~~~A~~lgip 58 (218)
T TIGR03679 42 TPNIELTRLQAEALGIP 58 (218)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 44567788888888885
No 273
>PF13309 HTH_22: HTH domain
Probab=32.87 E-value=37 Score=23.03 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=18.0
Q ss_pred EecChhhHHHHHHHHhhCCC
Q psy885 234 SRVEPAHKSKIVEFLQGMNE 253 (270)
Q Consensus 234 ar~tP~~K~~iV~~lq~~g~ 253 (270)
.+++.++|.++|+.|.+.|.
T Consensus 19 ~~l~~~~k~~iV~~L~~~G~ 38 (64)
T PF13309_consen 19 SRLSKEEKKEIVRQLYEKGI 38 (64)
T ss_pred hhCCHHHHHHHHHHHHHCCC
Confidence 56899999999999999984
No 274
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=32.60 E-value=61 Score=21.50 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGD 184 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD 184 (270)
++-.+.+..|.++|++|.|.|-+
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 55678899999999999988753
No 275
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=2.5e+02 Score=25.93 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=56.5
Q ss_pred EEeecCCCchhHHHHHHHHHhCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccC
Q psy885 153 VVGMLDPPRKEVFDSIARCRAAGIRVIVITGDN---KATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVAR 229 (270)
Q Consensus 153 ~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~---~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~ 229 (270)
+.++.|+-|-++..++.++-++.=.-+.|--|. ......+|..+||.+-. ....
T Consensus 219 vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~~eVr~vce~lGiDPl~-----------------------~anE 275 (339)
T COG0309 219 VTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVCELLGLDPLE-----------------------LANE 275 (339)
T ss_pred hhhccCCchhHHHHHHHHHHHHcCCeEEEeeccccccHHHHHHHHHhCCCHHH-----------------------hhcC
Confidence 456999999999999998876644444455555 45667888999987421 1223
Q ss_pred ceEEEecChhhHHHHHHHHhhCC
Q psy885 230 ARLFSRVEPAHKSKIVEFLQGMN 252 (270)
Q Consensus 230 ~~v~ar~tP~~K~~iV~~lq~~g 252 (270)
..+.+-+.|++=.++++.|++.|
T Consensus 276 G~lv~~V~~~~a~~~l~~L~~~~ 298 (339)
T COG0309 276 GKLVIAVPPEHAEEVLEALRSHG 298 (339)
T ss_pred ceEEEEECHHHHHHHHHHHHhcC
Confidence 36777888998888999999887
No 276
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.52 E-value=49 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
-+++.++++.+++.|.+++.+|+...
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45688999999999999999999754
No 277
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=32.38 E-value=53 Score=32.41 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=51.5
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~---~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
+.+|+.-.-+=+.+.+| |.+.|.+|-...+.. +||++.|+. ++-++++++..++-+++
T Consensus 244 ~~i~prdIlT~~a~~NA-i~v~~A~GGSTNavlHL~AIA~eagi~------------------l~l~dfd~is~~vP~l~ 304 (571)
T PRK06131 244 EDLKPSDILTREAFENA-IRVNAAIGGSTNAVIHLIAIAGRAGVE------------------LDLDDWDRIGRDVPVLV 304 (571)
T ss_pred cCCCHHHhcCHHHHHHH-HHHhcccCccccHHHHHHHHHHhcCCC------------------CCHHHHHHHhccCCeeE
Confidence 34555544445556655 788888888877776 578888874 34577888888899999
Q ss_pred ecChhhHHHHHHH
Q psy885 235 RVEPAHKSKIVEF 247 (270)
Q Consensus 235 r~tP~~K~~iV~~ 247 (270)
++.|.-++.+...
T Consensus 305 ~l~P~G~~~~~d~ 317 (571)
T PRK06131 305 NLQPSGEYLMEDF 317 (571)
T ss_pred EecCCCcccHHHH
Confidence 9999998765443
No 278
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.26 E-value=3.7e+02 Score=24.08 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=27.4
Q ss_pred cCCCHHHHHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECC
Q psy885 216 DDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSS 260 (270)
Q Consensus 216 ~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGD 260 (270)
+.++...+.++...-..|.-+||.-=.+|++.+.- .|..|+++|-
T Consensus 120 DGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~ 166 (284)
T PRK14179 120 DGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVELEGKHAVVIGR 166 (284)
T ss_pred cccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 33333333333333344778888876666665532 4899999998
No 279
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.84 E-value=2.3e+02 Score=25.39 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=28.5
Q ss_pred cCCCHHHHHHhccCceEEEecChhhHHHHHHHHh--hCCCEEEEECCcH
Q psy885 216 DDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQ--GMNEISAMDSSTG 262 (270)
Q Consensus 216 ~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq--~~g~~V~miGDG~ 262 (270)
+.++...+.++...-..|.-+||.-=.++++.+. -.|..|+++|-|.
T Consensus 120 DGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~ 168 (285)
T PRK14189 120 DGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSN 168 (285)
T ss_pred ccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCC
Confidence 3333333333333334577788877666666653 2488999999874
No 280
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=31.72 E-value=45 Score=33.01 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEe
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~---~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar 235 (270)
.+|+.-.-+=+.+.+| |.+.|.+|-...+.. +||++.|+. ++-+.++++-.++.++++
T Consensus 254 ~i~p~dIlT~~afeNA-i~v~~A~GGSTNavlHL~AIA~eagi~------------------l~lddfd~is~~vP~l~~ 314 (596)
T PRK13017 254 DLKPSDILTREAFENA-IVVNSAIGGSTNAPIHLIAIARHAGVE------------------LSLDDWQRVGEDVPLLVN 314 (596)
T ss_pred CCChHHhcCHHHHHHH-HHHHhhcCCCccHHHHHHHHHHHcCCC------------------CCHHHHHHHhccCCeeEE
Confidence 3444333333444444 556666666655554 356666663 456788888889999999
Q ss_pred cChhhHHHHHHHH
Q psy885 236 VEPAHKSKIVEFL 248 (270)
Q Consensus 236 ~tP~~K~~iV~~l 248 (270)
+.|.-+..+....
T Consensus 315 l~PsG~~~m~Dl~ 327 (596)
T PRK13017 315 LQPAGKYLGEDFH 327 (596)
T ss_pred ecCCCcccHHHHH
Confidence 9999998665543
No 281
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=1.2e+02 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 165 FDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 165 ~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+....++++|..|+=||-|.+..-...+.+.|+.
T Consensus 54 rd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 54 RDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 45567788889999999999999999999888875
No 282
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.54 E-value=2.3e+02 Score=22.14 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=41.2
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhCCC-eEEEEcCCCH-------HHHHHHHHHhCCC
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGI-RVIVITGDNK-------ATAEAICRRIGVF 199 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi-~v~mlTGD~~-------~ta~~iA~~~gi~ 199 (270)
+.+-.++|+-++.-.--+..+++++.|+++|+ .+.++=|-.. .....-.+++|+.
T Consensus 48 ~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 48 ETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred HcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 56777899999888888999999999999998 6655545442 2233556788875
No 283
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.23 E-value=99 Score=27.44 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=57.0
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHH
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQK 224 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~ 224 (270)
++..-|+.++..-||--+.+.+.++.|.++|..+. ++|+.-++. +-+|..+..-....
T Consensus 14 ~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~i---------------ELGvPfSDP-----vADGP~Iq~A~~rA-- 71 (265)
T COG0159 14 ENRGALIPYVTAGDPDLETSLEIIKTLVEAGADIL---------------ELGVPFSDP-----VADGPTIQAAHLRA-- 71 (265)
T ss_pred hCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEE---------------EecCCCCCc-----CccCHHHHHHHHHH--
Confidence 34567888899999888888888888888888775 778875543 44555443222211
Q ss_pred HhccCceEEEecChhhHHHHHHHHhhCC---CEEEEE
Q psy885 225 AAVARARLFSRVEPAHKSKIVEFLQGMN---EISAMD 258 (270)
Q Consensus 225 ~~~~~~~v~ar~tP~~K~~iV~~lq~~g---~~V~mi 258 (270)
+-..+|+++=+++++.+++.+ .+|+|+
T Consensus 72 -------L~~g~t~~~~lel~~~~r~~~~~~Pivlm~ 101 (265)
T COG0159 72 -------LAAGVTLEDTLELVEEIRAKGVKVPIVLMT 101 (265)
T ss_pred -------HHCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 223568888888888887543 355553
No 284
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=30.77 E-value=94 Score=26.99 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 165 FDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 165 ~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.++-.+||.+++-.+-....|..+|++.||.
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giT 216 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNIT 216 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCE
Confidence 46688899999999999999999999999999996
No 285
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.56 E-value=88 Score=23.40 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=25.8
Q ss_pred cCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHH
Q psy885 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATA 189 (270)
Q Consensus 157 ~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta 189 (270)
...-..+..+.++.+++.|.+++.+|+......
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 445567788899999999999999997654333
No 286
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.47 E-value=1.1e+02 Score=26.43 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=38.7
Q ss_pred CCeEEEEEEeecC---CCchhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHhCCC
Q psy885 146 VNLTFVGVVGMLD---PPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVF 199 (270)
Q Consensus 146 ~~l~~lG~i~~~d---~lr~~~~~~I~~l~~agi~v~ml-TGD~~~ta~~iA~~~gi~ 199 (270)
-++..+|.+.... |--.++.++++.+++.++++++. ++-+..++..+|++.|+.
T Consensus 167 ~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~ 224 (256)
T PF01297_consen 167 YGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVK 224 (256)
T ss_dssp TT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-E
T ss_pred cCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCc
Confidence 4678888885543 44567778888999999998887 566778899999999875
No 287
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=30.37 E-value=1.2e+02 Score=22.35 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=41.2
Q ss_pred hcccCCeEEEEEEee-cCCCc----hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 142 ASYEVNLTFVGVVGM-LDPPR----KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 142 ~~ie~~l~~lG~i~~-~d~lr----~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.++.....++.+..- ..|.- +...+..+.++..|++++.|+-|.........+..++.
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 344556777777666 44444 34455556667789999999999999888888888753
No 288
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=30.35 E-value=49 Score=28.10 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 164 VFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 164 ~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
...+++ +++.|+.++++||-....+..+...+++.
T Consensus 20 ~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 20 FVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 335666 68999999999999999999999999875
No 289
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=30.27 E-value=1e+02 Score=27.26 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 165 FDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 165 ~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.++-.+||.+++--+-....|+.+|++.||.
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giT 245 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLT 245 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCE
Confidence 46788899999999999999999999999999986
No 290
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=29.97 E-value=1e+02 Score=23.28 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEc---CCC---HHH--HHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 165 FDSIARCRAAGIRVIVIT---GDN---KAT--AEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 165 ~~~I~~l~~agi~v~mlT---GD~---~~t--a~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
++-++.++++|++.+|-= |+. +.. -...|++.||.--. +-+. ....
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~-----iPv~---------------------~~~~ 70 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVH-----IPVD---------------------GGAI 70 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE------------------------------TTT-
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEE-----eecC---------------------CCCC
Confidence 455889999999988873 321 222 23678899985211 1111 2234
Q ss_pred ChhhHHHHHHHHhhC-CCEEEEECCcH
Q psy885 237 EPAHKSKIVEFLQGM-NEISAMDSSTG 262 (270)
Q Consensus 237 tP~~K~~iV~~lq~~-g~~V~miGDG~ 262 (270)
++++=..+.+.|.+. +.+.++|.-|.
T Consensus 71 ~~~~v~~f~~~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 71 TEEDVEAFADALESLPKPVLAHCRSGT 97 (110)
T ss_dssp -HHHHHHHHHHHHTTTTSEEEE-SCSH
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCh
Confidence 555656666666653 45555666665
No 291
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.96 E-value=2.1e+02 Score=25.17 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=67.0
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhC---CCeEEEEcCCCHHHHHHHHHH-hCCCCCCCCccceeeechhhcCCCH
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAA---GIRVIVITGDNKATAEAICRR-IGVFTEEEDTTGKSYSGREFDDLPL 220 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~a---gi~v~mlTGD~~~ta~~iA~~-~gi~~~~~~~~~~~i~G~~~~~l~~ 220 (270)
..+|.=+=+++=.+-+-++..++|+.++.. |+.|+-++-|++..|..++.- |-.+.+.. ..+=+|..+. +.
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg---~pIGsg~Gi~--~~ 164 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG---SPIGSGQGLL--NP 164 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC---cCCCCCCCCC--CH
Confidence 456666666666667799999999999999 999998888999999998854 22222210 1122333222 23
Q ss_pred HHHHHhcc--CceEEEec---ChhhHHHHHHHHhhCCCEEEEECCcHh
Q psy885 221 SEQKAAVA--RARLFSRV---EPAHKSKIVEFLQGMNEISAMDSSTGK 263 (270)
Q Consensus 221 ~~~~~~~~--~~~v~ar~---tP~~K~~iV~~lq~~g~~V~miGDG~N 263 (270)
+.++.+.+ ++.|++.. +|+|=.+.++ .|..-.++|-++-
T Consensus 165 ~~I~~I~e~~~vpVI~egGI~tpeda~~Ame----lGAdgVlV~SAIt 208 (248)
T cd04728 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAME----LGADAVLLNTAIA 208 (248)
T ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH----cCCCEEEEChHhc
Confidence 33333322 34555543 6766554444 5666666665553
No 292
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=29.91 E-value=71 Score=31.32 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=49.9
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEe
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSR 235 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~---~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar 235 (270)
.+||.-.-+=+.+.+| |.+.|.+|-...+.. +||++.|+. ++-+.++++..++.+.++
T Consensus 223 ~i~p~dIlT~~a~~NA-i~v~~A~GGSTNavlHL~AiA~eaGi~------------------l~lddfd~is~~vP~l~~ 283 (535)
T TIGR00110 223 NIKPRDILTKEAFENA-ITVDMALGGSTNTVLHLLAIANEAGVD------------------LSLDDFDRLSRKVPHIAS 283 (535)
T ss_pred CCCHHHhCCHHHHHHH-HHHhcccCccccHHHHHHHHHHhcCCC------------------CCHHHHHHHhccCCccee
Confidence 4555433333445554 777888888877776 578888885 456788888888999999
Q ss_pred cChhhHHHHHHH
Q psy885 236 VEPAHKSKIVEF 247 (270)
Q Consensus 236 ~tP~~K~~iV~~ 247 (270)
+.|.-++.+...
T Consensus 284 l~P~G~~~~~d~ 295 (535)
T TIGR00110 284 LAPSGKYVMEDL 295 (535)
T ss_pred ecCCChhhHHHH
Confidence 999999865443
No 293
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=29.71 E-value=83 Score=28.04 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.6
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCe-EEEEcCCCH
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIR-VIVITGDNK 186 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~-v~mlTGD~~ 186 (270)
++..+--+...|.-|.+..+.+..+..+||+ +..+|||.+
T Consensus 59 g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 59 GVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred CCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5667777888888899999999999999996 668999995
No 294
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=29.68 E-value=1.4e+02 Score=22.88 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=4.1
Q ss_pred CCCeEEEEc
Q psy885 174 AGIRVIVIT 182 (270)
Q Consensus 174 agi~v~mlT 182 (270)
.++...+++
T Consensus 83 ~~~~~~~~~ 91 (149)
T cd03018 83 NGLTFPLLS 91 (149)
T ss_pred cCCCceEec
Confidence 344444444
No 295
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.48 E-value=79 Score=24.46 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=26.2
Q ss_pred ecCCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 156 MLDPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 156 ~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
-.++-++.+.++++.+++.|.+++++|+...
T Consensus 70 ~~g~t~~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 70 PEDRLEEKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred cCChhHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 4556677789999999999999999999754
No 296
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=29.38 E-value=95 Score=27.09 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+....+|+.|+++||+|-+.= |.....+..|+++|-.
T Consensus 112 ~~~l~~~i~~L~~~gIrVSLFi-dP~~~qi~~A~~~GAd 149 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGAD 149 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 4677899999999999997776 7777778889999965
No 297
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=29.31 E-value=73 Score=28.65 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCeEEEEEEeecCCCchhHHHHHHHHHhCCCe-EEEEcCCCH
Q psy885 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIR-VIVITGDNK 186 (270)
Q Consensus 146 ~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~-v~mlTGD~~ 186 (270)
.++..+--+...|.-|.+....+..++.+||+ +..||||.+
T Consensus 81 ~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p 122 (296)
T PRK09432 81 TGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLP 122 (296)
T ss_pred hCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 35667777888888899999999999999995 788899965
No 298
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=29.28 E-value=11 Score=27.65 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHHHHh
Q psy885 184 DNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQ 249 (270)
Q Consensus 184 D~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq 249 (270)
|+...-++..-++|+.. .+|++|..++-- .++.|.++++|.++++.+.
T Consensus 28 ~~q~~FIaFLNElG~r~---------~~G~~~t~~sfr---------~m~~~lt~~ek~elieeFn 75 (91)
T PF09010_consen 28 ENQELFIAFLNELGFRT---------PTGKEFTQMSFR---------QMFKRLTQEEKEELIEEFN 75 (91)
T ss_dssp TSHHHHHHHHHHHT-ES----------SSSE--HHHHH---------HHHHTS-HHHHHHHHHHSH
T ss_pred HhHHHHHHHHHHhcccc---------cCCcchhHHHHH---------HHHHHcCHHHHHHHHHHHh
Confidence 34555566666777753 234444332221 3466789999999999875
No 299
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.22 E-value=61 Score=24.38 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
+++.++++.+++.|++++.+|+....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 56788999999999999999997653
No 300
>PRK06450 threonine synthase; Validated
Probab=29.10 E-value=3.2e+02 Score=24.98 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCCeE-EEEcCCC-HHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhh
Q psy885 163 EVFDSIARCRAAGIRV-IVITGDN-KATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAH 240 (270)
Q Consensus 163 ~~~~~I~~l~~agi~v-~mlTGD~-~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~ 240 (270)
++.-+|..+++.|.+. +.-|.-| .......|...|+... .+.-+.+|..
T Consensus 84 ga~~~i~~a~~~g~~~vv~aSsGN~g~slA~~aa~~G~~~~-----------------------------i~vP~~~~~~ 134 (338)
T PRK06450 84 GSVTLISYLAEKGIKQISEDSSGNAGASIAAYGAAAGIEVK-----------------------------IFVPETASGG 134 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcHHHHHHHHHHHHcCCCEE-----------------------------EEEcCCCCHH
Confidence 4556777788788754 4444444 4444467777888621 3334457777
Q ss_pred HHHHHHHHhhCCCEEEEECCcHhhh
Q psy885 241 KSKIVEFLQGMNEISAMDSSTGKTE 265 (270)
Q Consensus 241 K~~iV~~lq~~g~~V~miGDG~ND~ 265 (270)
|...++ ..|..|..++....|+
T Consensus 135 k~~~i~---~~GA~vi~v~~~~~~~ 156 (338)
T PRK06450 135 KLKQIE---SYGAEVVRVRGSREDV 156 (338)
T ss_pred HHHHHH---HcCCEEEEECCCHHHH
Confidence 766544 4577888787666654
No 301
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.58 E-value=57 Score=24.70 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.5
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKAT 188 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~t 188 (270)
--+++.++++.+++.|.+++.+|+.....
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 45788999999999999999999975533
No 302
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=28.58 E-value=1.3e+02 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHh
Q psy885 164 VFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196 (270)
Q Consensus 164 ~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~ 196 (270)
..+..++++..|+.++.|+.|....+...+++.
T Consensus 45 l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 45 FRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 334444444556666666666665555555544
No 303
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=27.93 E-value=3.4e+02 Score=23.49 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=16.4
Q ss_pred HHHHhhCCCEEEEECCcHhhhh
Q psy885 245 VEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 245 V~~lq~~g~~V~miGDG~ND~~ 266 (270)
.+.-++.|..+.++|.+.+|..
T Consensus 100 ~~~A~~~g~~~I~~G~n~dD~~ 121 (252)
T TIGR00268 100 VKEAEKRGYDVVVDGTNADDLF 121 (252)
T ss_pred HHHHHHcCCCEEEECCCCcccc
Confidence 3344567888999999998853
No 304
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=27.49 E-value=4.3e+02 Score=23.28 Aligned_cols=42 Identities=2% Similarity=0.010 Sum_probs=29.0
Q ss_pred EeecCCCc-hhHHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHH
Q psy885 154 VGMLDPPR-KEVFDSIARCRAAGIR-VIVITGDNKATAEAICRR 195 (270)
Q Consensus 154 i~~~d~lr-~~~~~~I~~l~~agi~-v~mlTGD~~~ta~~iA~~ 195 (270)
+.|.|-+. ..++.++..|++.|++ +.-++|.+...--.+.++
T Consensus 89 LTFDdg~~~~~t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~ 132 (268)
T TIGR02873 89 LLINVAWGNEYLPEILQILKKHDVKATFFLEGKWVKENSQLAKM 132 (268)
T ss_pred EEEeCCCCcchHHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHH
Confidence 46677555 4578999999999997 566788775543333333
No 305
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.45 E-value=1.6e+02 Score=20.17 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHhCCCeEEEEc
Q psy885 161 RKEVFDSIARCRAAGIRVIVIT 182 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlT 182 (270)
.+++.++++.+++.|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5779999999999999999999
No 306
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=1e+02 Score=23.94 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHH
Q psy885 166 DSIARCRAAGIRVIVITGDNKATAEA 191 (270)
Q Consensus 166 ~~I~~l~~agi~v~mlTGD~~~ta~~ 191 (270)
.++..|+++||++++.-|...+-|+.
T Consensus 77 ~a~~~l~~~GIkv~~~~~~~V~e~i~ 102 (121)
T COG1433 77 NAYNALKAAGIKVYVAPGGTVEEAIK 102 (121)
T ss_pred HHHHHHHHcCcEEEecCCCCHHHHHH
Confidence 45566666666666666655555544
No 307
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.45 E-value=3.2e+02 Score=21.75 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhCCCEEEEECCcHhhhh
Q psy885 240 HKSKIVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 240 ~K~~iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
....+.+..++.|..++++|...+|..
T Consensus 94 r~~~l~~~a~~~g~~~l~~Gh~~dD~~ 120 (185)
T cd01993 94 RRGLLNKIAKELGADKLATGHNLDDEA 120 (185)
T ss_pred HHHHHHHHHHHcCCCEEEEcCChHHHH
Confidence 334445555777999999999999965
No 308
>PLN02580 trehalose-phosphatase
Probab=27.32 E-value=68 Score=30.07 Aligned_cols=34 Identities=6% Similarity=0.144 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR 194 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~ 194 (270)
+-+++.++++.|.+. ..|.+|||=..........
T Consensus 142 ~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 142 MSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVG 175 (384)
T ss_pred CCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhC
Confidence 347888999999877 5899999988877766543
No 309
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=27.31 E-value=1.6e+02 Score=18.90 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=21.8
Q ss_pred EEEEeecCCCchh-HHHHHHHHHhCCCeEEEEc
Q psy885 151 VGVVGMLDPPRKE-VFDSIARCRAAGIRVIVIT 182 (270)
Q Consensus 151 lG~i~~~d~lr~~-~~~~I~~l~~agi~v~mlT 182 (270)
+.+++..-+-.++ ..+.++.|.+.||++.|++
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~ 36 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIA 36 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 4444433333444 5678899999999999885
No 310
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=27.11 E-value=1.4e+02 Score=23.30 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.4
Q ss_pred CchhHHHHHHHHHhCCCe-EEEE----cCCCHHHHHHHHHH
Q psy885 160 PRKEVFDSIARCRAAGIR-VIVI----TGDNKATAEAICRR 195 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~-v~ml----TGD~~~ta~~iA~~ 195 (270)
+.|.+.++|+.|.+.|++ +.++ .-|+.+|-..+..+
T Consensus 75 l~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~~e 115 (135)
T cd00419 75 LEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIE 115 (135)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHHHH
Confidence 489999999999999985 4443 56888887766433
No 311
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.91 E-value=2.6e+02 Score=24.63 Aligned_cols=111 Identities=10% Similarity=0.096 Sum_probs=67.3
Q ss_pred ccCCeEEEEEEeecCCCchhHHHHHHHHHhC---CCeEEEEcCCCHHHHHHHHHH-hCCCCCCCCccceeeechhhcCCC
Q psy885 144 YEVNLTFVGVVGMLDPPRKEVFDSIARCRAA---GIRVIVITGDNKATAEAICRR-IGVFTEEEDTTGKSYSGREFDDLP 219 (270)
Q Consensus 144 ie~~l~~lG~i~~~d~lr~~~~~~I~~l~~a---gi~v~mlTGD~~~ta~~iA~~-~gi~~~~~~~~~~~i~G~~~~~l~ 219 (270)
...+|.=+=+++=.+-+-++..++|+.++.. |+.|+-++-|++.+|..++.- |-.+.+.. ..+=+|..+..
T Consensus 89 ~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg---~pIGsg~gi~~-- 163 (250)
T PRK00208 89 LGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG---APIGSGLGLLN-- 163 (250)
T ss_pred hCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC---cCCCCCCCCCC--
Confidence 3556666666666667789999999999999 999998888889999988754 22332211 11223433322
Q ss_pred HHHHHHhcc--CceEEEec---ChhhHHHHHHHHhhCCCEEEEECCcHh
Q psy885 220 LSEQKAAVA--RARLFSRV---EPAHKSKIVEFLQGMNEISAMDSSTGK 263 (270)
Q Consensus 220 ~~~~~~~~~--~~~v~ar~---tP~~K~~iV~~lq~~g~~V~miGDG~N 263 (270)
.+.++.+.. ++.|++.. +|+|=.+.++ .|..-.++|-++-
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame----lGAdgVlV~SAIt 208 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME----LGADAVLLNTAIA 208 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH----cCCCEEEEChHhh
Confidence 232333222 34555543 6766555544 4666666666554
No 312
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=26.72 E-value=2.3e+02 Score=25.39 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHhhCCCEEEEECC
Q psy885 237 EPAHKSKIVEFLQGMNEISAMDSS 260 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~miGD 260 (270)
+++.=..|++.||++|+.|.++||
T Consensus 139 ~~e~~~~I~~e~q~r~~lv~l~G~ 162 (287)
T cd01917 139 DSKALKKIVDDLMGRGFMLFLCDE 162 (287)
T ss_pred ChHHHHHHHHHHHHCCcEEEEecH
Confidence 455667899999999999999994
No 313
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=26.62 E-value=4.5e+02 Score=25.20 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
-+.+.+.=+.|++.|++.++..|+.......+++++++.
T Consensus 54 ~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~ 92 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAK 92 (471)
T ss_pred HHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCC
Confidence 355566667888999999999999999999999999876
No 314
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=26.28 E-value=85 Score=31.28 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEec
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV 236 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~---~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~ 236 (270)
+||.-.-+=+.+.+| |.+.|.+|-...+.. +||++.|+. ++-++++++-.++.++|++
T Consensus 253 i~prdIlT~~a~~NA-i~v~~A~GGSTNavlHL~AIA~eaGi~------------------l~l~dfd~is~~vP~L~~~ 313 (615)
T PRK12448 253 VLPRSIATKAAFENA-MTLDIAMGGSTNTVLHLLAAAQEAEVD------------------FTMADIDRLSRKVPCLCKV 313 (615)
T ss_pred CCHHHcCCHHHHHHH-HHHccccCccccHHHHHHHHHHhcCCC------------------CCHHHHHHHhccCCeeEEe
Confidence 444333333445554 677777787777765 477777774 3557888888899999999
Q ss_pred Chh-hHHHHHHH
Q psy885 237 EPA-HKSKIVEF 247 (270)
Q Consensus 237 tP~-~K~~iV~~ 247 (270)
.|. .|+.+...
T Consensus 314 ~P~~G~~~~~d~ 325 (615)
T PRK12448 314 APNTQKYHMEDV 325 (615)
T ss_pred cCCCCcccHHHH
Confidence 999 87765443
No 315
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.14 E-value=99 Score=21.93 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=27.9
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
.-.|+|+-. .++ +..+.++.|++.|+.+.-+|.|..
T Consensus 41 a~vlvGi~~-~~~---~~~~l~~~l~~~g~~~~dls~ne~ 76 (81)
T cd04907 41 GRVLVGIQV-PDA---DLDELKERLDALGYPYQEETDNPA 76 (81)
T ss_pred eeEEEEEEe-ChH---HHHHHHHHHHHcCCCeEECCCCHH
Confidence 345666653 333 889999999999999999998754
No 316
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=26.12 E-value=2.3e+02 Score=25.26 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=32.2
Q ss_pred EEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 152 G~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
|+=++.||= ...++.++++||+|..+-|=+..++.-+| .|+...
T Consensus 87 G~P~ISDPG----~~LV~~a~~~gi~V~~lPG~sA~~tAL~~--SGl~~~ 130 (275)
T COG0313 87 GTPLISDPG----YELVRAAREAGIRVVPLPGPSALITALSA--SGLPSQ 130 (275)
T ss_pred CCCcccCcc----HHHHHHHHHcCCcEEecCCccHHHHHHHH--cCCCCC
Confidence 444577764 36788999999999999998876655443 577643
No 317
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=26.08 E-value=94 Score=26.85 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 165 FDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 165 ~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.++-.+||.+++--+-....|..+|++.||.
T Consensus 182 ~emv~Ka~~aGipvivS~sapT~~av~~A~~~git 216 (236)
T PF02634_consen 182 SEMVQKAARAGIPVIVSRSAPTSLAVELARKLGIT 216 (236)
T ss_dssp HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-E
T ss_pred HHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCE
Confidence 46788999999999999999999999999999986
No 318
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=25.89 E-value=95 Score=30.58 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH---HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~---~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
..+||.-.-+=+.+.+| |.+.|.+|-...+.+ +||++.|+. ++-+.|+++..++.+++
T Consensus 241 ~~~~prdIlT~~a~~NA-i~v~~A~GGSTNavlHL~AIA~eaGi~------------------l~l~dfd~is~~vP~l~ 301 (552)
T PRK00911 241 KDIKPRDILTREAFENA-IAVDMALGGSTNAVLHLLAIAHEAGVD------------------LTLDDFNRISKRTPHLA 301 (552)
T ss_pred cCCChHHhcCHHHHHHH-HHHhcccCccccHHHHHHHHHHhcCCC------------------CCHHHHHHHhccCCcee
Confidence 44555433344445555 777888888877766 477888874 35577888888899999
Q ss_pred ecChhhHHHHHHH
Q psy885 235 RVEPAHKSKIVEF 247 (270)
Q Consensus 235 r~tP~~K~~iV~~ 247 (270)
.+.|.-+..+...
T Consensus 302 ~~~P~G~~~~~dl 314 (552)
T PRK00911 302 DLKPSGKYVMEDL 314 (552)
T ss_pred eecCCChHHHHHH
Confidence 9999999876554
No 319
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.79 E-value=1.6e+02 Score=22.27 Aligned_cols=46 Identities=17% Similarity=0.079 Sum_probs=35.0
Q ss_pred EEeec--CCCchhHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHhCCC
Q psy885 153 VVGML--DPPRKEVFDSIARCRAAGIRVIV-ITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 153 ~i~~~--d~lr~~~~~~I~~l~~agi~v~m-lTGD~~~ta~~iA~~~gi~ 199 (270)
++.+. +...+.+.+..+.|+++|+++.+ .. .+......-|...|+.
T Consensus 31 Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~ 79 (121)
T cd00858 31 VLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTP 79 (121)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCC
Confidence 34455 56677888888999999999987 56 7777777778777765
No 320
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.46 E-value=96 Score=27.35 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=32.4
Q ss_pred cCCCchhH-HHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 157 LDPPRKEV-FDSIARCRAA-GIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 157 ~d~lr~~~-~~~I~~l~~a-gi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
.||+.-++ -+.|..|+++ |..++|||-| ..++..||..+.++.+
T Consensus 176 LDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv~~L~~ 221 (263)
T COG1127 176 LDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAVLAD 221 (263)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceEEEEeC
Confidence 35555443 4678888866 8899999998 5567888888877754
No 321
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.36 E-value=1e+02 Score=30.35 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi 198 (270)
+++...|+.|++.|+++++ || .++..+|++.|+
T Consensus 142 ~e~~~~v~~lk~~G~~~vv--G~--~~~~~~A~~~g~ 174 (538)
T PRK15424 142 EDARGQINELKANGIEAVV--GA--GLITDLAEEAGM 174 (538)
T ss_pred HHHHHHHHHHHHCCCCEEE--cC--chHHHHHHHhCC
No 322
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.36 E-value=1e+02 Score=24.57 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=31.6
Q ss_pred EEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCH-HHHHHHHHHhC
Q psy885 151 VGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNK-ATAEAICRRIG 197 (270)
Q Consensus 151 lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~-~ta~~iA~~~g 197 (270)
+-+.+=+ -..+++.+.++.+++.|+++++-||-.. +....++..+.
T Consensus 65 Vt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD 111 (147)
T TIGR02826 65 VLFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLD 111 (147)
T ss_pred EEEechh-cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCC
Confidence 4444445 4557799999999999999999999543 23344554433
No 323
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=25.24 E-value=1.5e+02 Score=21.68 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCeEEEEcCCC--HHHHHHHHHHhCC
Q psy885 166 DSIARCRAAGIRVIVITGDN--KATAEAICRRIGV 198 (270)
Q Consensus 166 ~~I~~l~~agi~v~mlTGD~--~~ta~~iA~~~gi 198 (270)
+++..+-.+|+..+++||+. .......|++.|+
T Consensus 52 di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i 86 (105)
T PF07085_consen 52 DIQLAAIEAGIACIILTGGLEPSEEVLELAKELGI 86 (105)
T ss_dssp HHHHHHCCTTECEEEEETT----HHHHHHHHHHT-
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCC
Confidence 33555555666666666654 2334455666664
No 324
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=25.23 E-value=66 Score=33.48 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=0.0
Q ss_pred hHHHHHHHH----hhCCC---EEEEECCcHhhhhhh
Q psy885 240 HKSKIVEFL----QGMNE---ISAMDSSTGKTELRI 268 (270)
Q Consensus 240 ~K~~iV~~l----q~~g~---~V~miGDG~ND~~ai 268 (270)
.|...++.+ +..|. .|+++||+.||..|+
T Consensus 762 nKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF 797 (854)
T PLN02205 762 SKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMF 797 (854)
T ss_pred CHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHH
No 325
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.22 E-value=4.9e+02 Score=23.87 Aligned_cols=112 Identities=17% Similarity=0.084 Sum_probs=62.4
Q ss_pred EEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCC-HHHHHHHHHHhC--CCCCCCCccceeeechhhcC-C--------
Q psy885 151 VGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDN-KATAEAICRRIG--VFTEEEDTTGKSYSGREFDD-L-------- 218 (270)
Q Consensus 151 lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~-~~ta~~iA~~~g--i~~~~~~~~~~~i~G~~~~~-l-------- 218 (270)
+=+|+=---+-++... .|++.||.|.=+.|-+ .+||.++|+..+ ...........+++|-++.. +
T Consensus 79 VLIIGGp~AVs~~yE~---~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~~~ 155 (337)
T COG2247 79 VLIIGGPIAVSPNYEN---ALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYADALMELMKEGI 155 (337)
T ss_pred EEEECCCCcCChhHHH---HHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhcCc
Confidence 3333333334455544 4568899998888855 789999999987 22221222345666766552 0
Q ss_pred --------------------CHHHH-HHhccCce-----EEEecChhhHHHHHH----HHhhCCCEEEEECCcHhhh
Q psy885 219 --------------------PLSEQ-KAAVARAR-----LFSRVEPAHKSKIVE----FLQGMNEISAMDSSTGKTE 265 (270)
Q Consensus 219 --------------------~~~~~-~~~~~~~~-----v~ar~tP~~K~~iV~----~lq~~g~~V~miGDG~ND~ 265 (270)
-..++ ....++.+ +....+++--.+-++ .+.....+|.+.|=|.|+.
T Consensus 156 ~p~~~~n~~~~~~~~~~~~l~~s~~a~~~~~pi~~~~~l~~~n~~~~~a~~~I~~a~~kl~~a~~Iv~~~~~~~~~~ 232 (337)
T COG2247 156 VPVILKNTSILVRWSRKLALAESPYAANIGCPILYNTKLTEKNVTAEIALRAIKKAEDKLILAKKIVILSGLGNNTV 232 (337)
T ss_pred ceeEecccccccccccceeeeecHhHHhcCCccccccceeeecccchhhHHHHHHHHHHhhhcceEEEecccccchh
Confidence 00111 11223333 444555554444444 3444567899999998875
No 326
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.16 E-value=3.9e+02 Score=24.01 Aligned_cols=46 Identities=7% Similarity=0.032 Sum_probs=29.5
Q ss_pred cCCCHHHHHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCc
Q psy885 216 DDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSST 261 (270)
Q Consensus 216 ~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG 261 (270)
+.++...+.++...-.-|.-+||.-=.+|++.+.- .|..|+++|-|
T Consensus 119 DGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs 166 (285)
T PRK14191 119 DGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIEIKGKDVVIIGAS 166 (285)
T ss_pred cccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCC
Confidence 33333333344333345677888877777776643 48999999988
No 327
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.13 E-value=1.9e+02 Score=18.72 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=21.8
Q ss_pred EEEEeecCCCchh-HHHHHHHHHhCCCeEEEEc
Q psy885 151 VGVVGMLDPPRKE-VFDSIARCRAAGIRVIVIT 182 (270)
Q Consensus 151 lG~i~~~d~lr~~-~~~~I~~l~~agi~v~mlT 182 (270)
+.+++-.-+-+++ ..+.++.|.+.|+++.|++
T Consensus 4 isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~ 36 (66)
T cd04919 4 LSLVGKHMKNMIGIAGRMFTTLADHRINIEMIS 36 (66)
T ss_pred EEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 3444433333444 5678899999999998885
No 328
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=25.13 E-value=76 Score=26.99 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHhC
Q psy885 161 RKEVFDSIARCRAAGI-RVIVITGDNKATAEAICRRIG 197 (270)
Q Consensus 161 r~~~~~~I~~l~~agi-~v~mlTGD~~~ta~~iA~~~g 197 (270)
.|.+...|+.|+++|| .+++|||=-.+.-..+-.+-+
T Consensus 31 ~plIErqI~~L~e~gI~dI~IVvGYlkE~FeYLkdKy~ 68 (231)
T COG4750 31 EPLIERQIEQLREAGIDDITIVVGYLKEQFEYLKDKYD 68 (231)
T ss_pred cccHHHHHHHHHHCCCceEEEEeeehHHHHHHHHHhcC
Confidence 4667788999999999 689999977776666665544
No 329
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=25.04 E-value=92 Score=25.74 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.6
Q ss_pred CeEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHH
Q psy885 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAE 190 (270)
Q Consensus 147 ~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~ 190 (270)
.-.++|+-.-- --+++-.+++..++.|+.|+.+||.+----.
T Consensus 110 GDvLigISTSG--NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 110 GDVLIGISTSG--NSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred CCEEEEEeCCC--CCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 34566665554 3478899999999999999999998764333
No 330
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=24.76 E-value=1.3e+02 Score=26.33 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
++...++|+.|+++||+|-+. =|........|+++|-.
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLF-iDP~~~qi~~A~~~GAd 146 (237)
T TIGR00559 109 KDKLCELVKRFHAAGIEVSLF-IDADKDQISAAAEVGAD 146 (237)
T ss_pred HHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHhCcC
Confidence 467889999999999999887 45556677788899875
No 331
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=24.61 E-value=1.4e+02 Score=27.77 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=47.3
Q ss_pred hhcccCCeEEEEEEeecCCC-----chhHHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHH-hCCCCCCCCccceeeech
Q psy885 141 FASYEVNLTFVGVVGMLDPP-----RKEVFDSIARCRAAGIR-VIVITGDNKATAEAICRR-IGVFTEEEDTTGKSYSGR 213 (270)
Q Consensus 141 ~~~ie~~l~~lG~i~~~d~l-----r~~~~~~I~~l~~agi~-v~mlTGD~~~ta~~iA~~-~gi~~~~~~~~~~~i~G~ 213 (270)
+..|+..+..||..++..|. +..+...|+..+..|.+ +++.||- .....|++ .++... ..+..|+
T Consensus 161 rLGI~GGISILGTTGiV~P~S~~a~~~si~~~l~va~a~g~~~vvl~~G~---~ge~~a~~~~~l~~~-----~~V~~gn 232 (361)
T PRK00075 161 RLGIVGGISILGTTGIVEPMSEEAYLASIKQELDVARANGLDHVVLVTGN---NGEDYARKLLGLPED-----AIIKMGN 232 (361)
T ss_pred hcCccCCeEecccCEEEEECCHHHHHHHHHHHHHHHHHcCCCeEEEccCh---HHHHHHHHhcCCChh-----hEEEeeh
Confidence 34678899999999999995 45566667777778886 4666773 34555655 465432 2455565
Q ss_pred hhcCCCHH
Q psy885 214 EFDDLPLS 221 (270)
Q Consensus 214 ~~~~l~~~ 221 (270)
-+-.+.+.
T Consensus 233 fiG~~L~~ 240 (361)
T PRK00075 233 FVGPMLKA 240 (361)
T ss_pred hHHHHHHH
Confidence 55444333
No 332
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=24.56 E-value=3.9e+02 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
..+.+.=+.|++.|+++++.+||.......+++++++.
T Consensus 55 ~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~ 92 (461)
T COG0415 55 QSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAAT 92 (461)
T ss_pred HHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcc
Confidence 45666677888999999999999999999999999854
No 333
>PRK12483 threonine dehydratase; Reviewed
Probab=24.45 E-value=2.6e+02 Score=27.33 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=24.8
Q ss_pred eEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhh
Q psy885 231 RLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
.+.-..+|..|. +.++..|..|..+|+...|+.
T Consensus 113 IvmP~~tp~~Kv---~~~r~~GAeVil~g~~~d~a~ 145 (521)
T PRK12483 113 IVMPRTTPQLKV---DGVRAHGGEVVLHGESFPDAL 145 (521)
T ss_pred EEECCCCCHHHH---HHHHHCCCEEEEECCCHHHHH
Confidence 456677899985 456667888999998877764
No 334
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.22 E-value=1.2e+02 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=24.0
Q ss_pred eEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechh
Q psy885 177 RVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGRE 214 (270)
Q Consensus 177 ~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~ 214 (270)
+++| =||+..|=+..|+..||.. .+|.||..
T Consensus 209 ~~~m-VGD~~~TDI~~a~~~G~~t------~LV~TGv~ 239 (269)
T COG0647 209 EVLM-VGDRLDTDILGAKAAGLDT------LLVLTGVS 239 (269)
T ss_pred cEEE-EcCCchhhHHHHHHcCCCE------EEEccCCC
Confidence 5555 5999999999999999972 46777754
No 335
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.18 E-value=2.7e+02 Score=25.54 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=42.7
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhC---CCeEEEEcCCCHHHHHHHHHH
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAA---GIRVIVITGDNKATAEAICRR 195 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~a---gi~v~mlTGD~~~ta~~iA~~ 195 (270)
..+|.=+=+++=..-+-++..++++.++.. |+.|..++-|++.+|.+++.-
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 556666666666667779999999999999 999999999999999998853
No 336
>PLN03017 trehalose-phosphatase
Probab=24.15 E-value=2.1e+02 Score=26.65 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=29.8
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
.+-+++.++|+.|. .|+.++++||-.......+.
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 36789999999999 78999999999999888773
No 337
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=24.10 E-value=82 Score=27.82 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.2
Q ss_pred EEEEEeecCCCchhHHHHHHHHHhC--CCeEEEEcCCCH
Q psy885 150 FVGVVGMLDPPRKEVFDSIARCRAA--GIRVIVITGDNK 186 (270)
Q Consensus 150 ~lG~i~~~d~lr~~~~~~I~~l~~a--gi~v~mlTGD~~ 186 (270)
..|-.+ -|.+..-+..+++.+++. ....+++|||..
T Consensus 42 ~~G~~~-CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v 79 (296)
T cd00842 42 PWGDYG-CDSPWRLVESALEAIKKNHPKPDFILWTGDLV 79 (296)
T ss_pred CCcCcC-CCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCC
Confidence 355555 899999999999999998 899999999985
No 338
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.04 E-value=3.5e+02 Score=24.29 Aligned_cols=32 Identities=6% Similarity=-0.032 Sum_probs=23.6
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.-|.-+||.-=.++++.+.- .|..|+++|-|.
T Consensus 141 ~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~ 174 (287)
T PRK14176 141 EGLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSN 174 (287)
T ss_pred CCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCc
Confidence 34677888877777776542 488999999874
No 339
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=24.01 E-value=3.8e+02 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHhCCCeEEEEcC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTG 183 (270)
-+++.++++.|++.|+ ..++|.
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn 166 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATN 166 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeC
Confidence 5789999999998887 556654
No 340
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.01 E-value=2.4e+02 Score=23.12 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHhC
Q psy885 163 EVFDSIARCRAAGIRVIVIT-GDNKATAEAICRRIG 197 (270)
Q Consensus 163 ~~~~~I~~l~~agi~v~mlT-GD~~~ta~~iA~~~g 197 (270)
+..++.+.+++.||++.+|. |+...+-..||+..|
T Consensus 124 ~~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tg 159 (183)
T cd01453 124 NIYETIDKLKKENIRVSVIGLSAEMHICKEICKATN 159 (183)
T ss_pred hHHHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhC
Confidence 45678889999999987664 666667777887765
No 341
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=23.87 E-value=1e+02 Score=27.77 Aligned_cols=37 Identities=43% Similarity=0.524 Sum_probs=27.1
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~i 192 (270)
+.+.|.+|.. +.|+.++++|.+|.+++--...-++..
T Consensus 159 vvildrpRH~--~lI~~ir~~GarV~li~DGDVa~~i~t 195 (332)
T COG1494 159 VVILDRPRHA--ELIAEIRAAGARVRLIPDGDVAAAILT 195 (332)
T ss_pred EEEecCchHH--HHHHHHHHhCCEEEEecCcchhhhhee
Confidence 4566777765 789999999999999985444444433
No 342
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=23.67 E-value=84 Score=29.23 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEA 191 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~ 191 (270)
|.-+...|++.+++|++..+||-|.+.....
T Consensus 127 r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R 157 (361)
T cd04736 127 RELAELLVKRALAAGYTTLVLTTDVAVNGYR 157 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCc
Confidence 8999999999999999999999998776654
No 343
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=23.58 E-value=2e+02 Score=25.95 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCeEEEE-cCC-CHHHHHHHHHHh-CCCCCCCCccceeeechhhcCC
Q psy885 164 VFDSIARCRAAGIRVIVI-TGD-NKATAEAICRRI-GVFTEEEDTTGKSYSGREFDDL 218 (270)
Q Consensus 164 ~~~~I~~l~~agi~v~ml-TGD-~~~ta~~iA~~~-gi~~~~~~~~~~~i~G~~~~~l 218 (270)
+++.++.||+.|+.++++ |-- .......+|+++ ||. +++.|.+=..+
T Consensus 196 ~~~~v~~Lr~~gvD~II~LsH~g~~~~d~~lA~~v~gID--------vIigGHsH~~l 245 (313)
T cd08162 196 IQPSIDALTAQGINKIILLSHLQQISIEQALAALLSGVD--------VIIAGGSNTLL 245 (313)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchHHHHHhcCCCCC--------EEEeCCCCccC
Confidence 678899999999987666 322 123456778776 443 67777654443
No 344
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.58 E-value=5.3e+02 Score=23.02 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=24.1
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
..|.-+||.-=.+|++.+.- .|..|+++|-+.
T Consensus 135 ~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~ 168 (278)
T PRK14172 135 KCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSN 168 (278)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 34778888887777777643 489999999764
No 345
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.49 E-value=77 Score=26.42 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.5
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
--+++.++++.+++.|++++.+||...
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 357888999999999999999999754
No 346
>PLN02423 phosphomannomutase
Probab=23.46 E-value=99 Score=26.73 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHHhCCCeEEEEcCCCHHHH
Q psy885 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATA 189 (270)
Q Consensus 159 ~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta 189 (270)
++.+...++|++|++. +++++.||-.....
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~ 53 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKI 53 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHH
Confidence 4778889999999976 99999999865544
No 347
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=23.40 E-value=1.4e+02 Score=25.88 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=35.4
Q ss_pred cCCCc-hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 157 LDPPR-KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 157 ~d~lr-~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
-||+- .+++..|..|+..||-| +||-.|...+..|+..+=|+..
T Consensus 170 VDPiaV~dIq~iI~~L~~rgiGv-LITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 170 VDPIAVIDIQRIIKHLKDRGIGV-LITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred CCchhHHHHHHHHHHHHhCCceE-EEccccHHHHHhhhheEEEEec
Confidence 35544 78899999999999987 4699999998999888777644
No 348
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.30 E-value=78 Score=25.66 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=26.6
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC 193 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA 193 (270)
--+++.++++.+++.|++++.||+.........|
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGKLA 117 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 4577889999999999999999997654444433
No 349
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.19 E-value=3.5e+02 Score=22.45 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=14.6
Q ss_pred eEEEEc-CCC--HHHHHHHHHHhCCC
Q psy885 177 RVIVIT-GDN--KATAEAICRRIGVF 199 (270)
Q Consensus 177 ~v~mlT-GD~--~~ta~~iA~~~gi~ 199 (270)
||+++| ||. ..+...+|+++|--
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgR 26 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGR 26 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcE
Confidence 466666 555 34556778888753
No 350
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=23.08 E-value=1.4e+02 Score=25.14 Aligned_cols=48 Identities=27% Similarity=0.533 Sum_probs=34.8
Q ss_pred eEEEEEEeecCCCchhHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHhC
Q psy885 148 LTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVIT-GDNKATAEAICRRIG 197 (270)
Q Consensus 148 l~~lG~i~~~d~lr~~~~~~I~~l~~agi~v~mlT-GD~~~ta~~iA~~~g 197 (270)
+.+.|-+.--||- ++.++|+.|++.+|+|-+|. +-.......+|++.|
T Consensus 105 lvi~gSl~t~Dp~--di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~T~ 153 (193)
T PF04056_consen 105 LVIFGSLTTCDPG--DIHETIESLKKENIRVSVISLAAEVYICKKICKETG 153 (193)
T ss_pred EEEEeecccCCch--hHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHhhC
Confidence 5567888888876 89999999999999876653 223445556666654
No 351
>KOG3128|consensus
Probab=23.07 E-value=2.4e+02 Score=25.14 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCC
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 201 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~ 201 (270)
+|+++.+.+..|++.+|.+.+.|-.-......+-++.....+
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p 180 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP 180 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc
Confidence 699999999999999999999997776666666666544433
No 352
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=22.68 E-value=5.7e+02 Score=23.06 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=27.8
Q ss_pred HHHHHhccC-ceEEEecChhhHH--HHHHHHhhCCCEEEEECCc
Q psy885 221 SEQKAAVAR-ARLFSRVEPAHKS--KIVEFLQGMNEISAMDSST 261 (270)
Q Consensus 221 ~~~~~~~~~-~~v~ar~tP~~K~--~iV~~lq~~g~~V~miGDG 261 (270)
+..+.+..+ +.|.--++|--|. ..|+.+.++|+.|..+||-
T Consensus 79 ~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~ 122 (298)
T PRK01045 79 AVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHK 122 (298)
T ss_pred HHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCC
Confidence 333443333 5677777787553 4577788889999999984
No 353
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.67 E-value=1.1e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=42.0
Q ss_pred cCCeEEEEEEeecCCCchhHHHHHHHHHhCCCe--EEEEcCCCHHHHHHHHHHhCCC
Q psy885 145 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIR--VIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr~~~~~~I~~l~~agi~--v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+.+..++|+-....+.-+.+++.++.|++.|.+ +.++=|-...+ ...|+++|-.
T Consensus 133 ~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~-~~~~~~~gad 188 (197)
T TIGR02370 133 KEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT-QDWADKIGAD 188 (197)
T ss_pred HcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC-HHHHHHhCCc
Confidence 456778999999999999999999999999885 55444545554 4578888764
No 354
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=22.54 E-value=4.1e+02 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhCCCeEEEEcC
Q psy885 162 KEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTG 183 (270)
.++...+..|+++|+.|.++|-
T Consensus 25 ~E~~~p~~~l~~aG~~VdiaS~ 46 (231)
T cd03147 25 SEALHPFNVFREAGFEVDFVSE 46 (231)
T ss_pred HHHHHHHHHHHHCCCEEEEECC
Confidence 4667788999999999999984
No 355
>PRK10425 DNase TatD; Provisional
Probab=22.51 E-value=5.2e+02 Score=22.52 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=27.6
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCHHH---HHHHHHH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNKAT---AEAICRR 195 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~~t---a~~iA~~ 195 (270)
..++..+++++++++|+.-++++|-+... +..+|+.
T Consensus 13 ~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~ 51 (258)
T PRK10425 13 FAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQ 51 (258)
T ss_pred hhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHh
Confidence 44678899999999999888888877666 4455554
No 356
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.29 E-value=84 Score=24.49 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHhCCCeEEEEcC
Q psy885 162 KEVFDSIARCRAAGIRVIVITG 183 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTG 183 (270)
+.+.++++..|+.|++|+-|||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 8889999999999999999997
No 357
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=22.21 E-value=1.2e+02 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=25.7
Q ss_pred CceEEEecCh-hhHHHHHHHHhh---C----CCEEEEECCcHh
Q psy885 229 RARLFSRVEP-AHKSKIVEFLQG---M----NEISAMDSSTGK 263 (270)
Q Consensus 229 ~~~v~ar~tP-~~K~~iV~~lq~---~----g~~V~miGDG~N 263 (270)
+..+|||+|. .||..+.+..+. . ..++.=||-|.|
T Consensus 55 k~vlYARVSSadQK~DL~rQv~~l~~~~~~~~~v~~digSgln 97 (193)
T COG2452 55 KTVLYARVSSADQKEDLERQINYLTNYGYKVDEVLTDIGSGLN 97 (193)
T ss_pred ceEEEEEeccccchHHHHHHHHHHHHhccccceeeehhhhhhh
Confidence 5689999976 699998877653 2 345666788877
No 358
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.04 E-value=3.6e+02 Score=20.45 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=43.7
Q ss_pred eecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 155 GMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 155 ~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
.+-+++.+...+.++. |+.+.+...-........++.+.. ++..+.. .++.+.++.. ++..+.+
T Consensus 2 li~~~~~~~~~~~l~~----~~~v~~~~~~~~~~~~~~l~~~d~---------ii~~~~~--~~~~~~l~~~-~~Lk~I~ 65 (133)
T PF00389_consen 2 LITDPLPDEEIERLEE----GFEVEFCDSPSEEELAERLKDADA---------IIVGSGT--PLTAEVLEAA-PNLKLIS 65 (133)
T ss_dssp EESSS-SHHHHHHHHH----TSEEEEESSSSHHHHHHHHTTESE---------EEESTTS--TBSHHHHHHH-TT-SEEE
T ss_pred EEeccCCHHHHHHHHC----CceEEEeCCCCHHHHHHHhCCCeE---------EEEcCCC--CcCHHHHhcc-ceeEEEE
Confidence 4556676666555554 777777664333322222222221 1221111 3444544444 5555555
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEECCcHhhh
Q psy885 235 RVEPAHKSKIVEFLQGMNEISAMDSSTGKTE 265 (270)
Q Consensus 235 r~tP~~K~~iV~~lq~~g~~V~miGDG~ND~ 265 (270)
..+-.-=.-=++.++++|-.|.=+.+...++
T Consensus 66 ~~~~G~d~id~~~a~~~gI~V~n~~g~~~~a 96 (133)
T PF00389_consen 66 TAGAGVDNIDLEAAKERGIPVTNVPGYNAEA 96 (133)
T ss_dssp ESSSSCTTB-HHHHHHTTSEEEE-TTTTHHH
T ss_pred EcccccCcccHHHHhhCeEEEEEeCCcCCcc
Confidence 4433221223566777777666665544433
No 359
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.98 E-value=79 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHH
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKA 187 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ 187 (270)
-+++.++++.+++.|++++.||+....
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 468899999999999999999987443
No 360
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.97 E-value=4.9e+02 Score=23.35 Aligned_cols=46 Identities=2% Similarity=-0.098 Sum_probs=27.7
Q ss_pred CCCHHHHHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 217 DLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 217 ~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.++...+-++...-.-|.-+||.-=.++++...- .|..|+++|-+.
T Consensus 122 Gl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~ 169 (284)
T PRK14177 122 GVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSP 169 (284)
T ss_pred cCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 3333334444444455778888766666665432 388999999763
No 361
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.84 E-value=3.4e+02 Score=20.06 Aligned_cols=83 Identities=10% Similarity=0.094 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhcc--CceEEEecCh--hhH
Q psy885 166 DSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVA--RARLFSRVEP--AHK 241 (270)
Q Consensus 166 ~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~--~~~v~ar~tP--~~K 241 (270)
-+++-++..|.+|++++++.. ....++++|.. .+++.++.+ ..++..+... ...+.-.+++ ..=
T Consensus 5 ~a~q~ak~~G~~vi~~~~~~~--k~~~~~~~Ga~--------~~~~~~~~~--~~~~i~~~~~~~~~d~vid~~g~~~~~ 72 (130)
T PF00107_consen 5 MAIQLAKAMGAKVIATDRSEE--KLELAKELGAD--------HVIDYSDDD--FVEQIRELTGGRGVDVVIDCVGSGDTL 72 (130)
T ss_dssp HHHHHHHHTTSEEEEEESSHH--HHHHHHHTTES--------EEEETTTSS--HHHHHHHHTTTSSEEEEEESSSSHHHH
T ss_pred HHHHHHHHcCCEEEEEECCHH--HHHHHHhhccc--------ccccccccc--cccccccccccccceEEEEecCcHHHH
Confidence 367889999988888887544 45778899953 234443332 2233444443 3667767766 333
Q ss_pred HHHHHHHhhCCCEEEEECCc
Q psy885 242 SKIVEFLQGMNEISAMDSST 261 (270)
Q Consensus 242 ~~iV~~lq~~g~~V~miGDG 261 (270)
...++.++..|. +..+|-.
T Consensus 73 ~~~~~~l~~~G~-~v~vg~~ 91 (130)
T PF00107_consen 73 QEAIKLLRPGGR-IVVVGVY 91 (130)
T ss_dssp HHHHHHEEEEEE-EEEESST
T ss_pred HHHHHHhccCCE-EEEEEcc
Confidence 334444555554 4444443
No 362
>PRK06381 threonine synthase; Validated
Probab=21.83 E-value=4.3e+02 Score=23.55 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCeEEE--EcCCCHHHHHHHHHHhCCC
Q psy885 164 VFDSIARCRAAGIRVIV--ITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 164 ~~~~I~~l~~agi~v~m--lTGD~~~ta~~iA~~~gi~ 199 (270)
+...|..+++.|.+.++ -||........+|+..|+.
T Consensus 51 a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~ 88 (319)
T PRK06381 51 AEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLK 88 (319)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCc
Confidence 45667777888876544 3453333334566778875
No 363
>PRK09054 phosphogluconate dehydratase; Validated
Probab=21.82 E-value=88 Score=31.09 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=38.5
Q ss_pred CeEEEEcCCCHHHHH---HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhhHHHHHH
Q psy885 176 IRVIVITGDNKATAE---AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVE 246 (270)
Q Consensus 176 i~v~mlTGD~~~ta~---~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~ 246 (270)
|.+.|.||-+..+.. +||++.||. ++.+.++++...+.+++++.|.-+..+-.
T Consensus 291 i~~~~A~GGSTN~vlHL~AIA~~aGi~------------------l~l~dfd~is~~vP~L~~v~P~G~~~~~d 346 (603)
T PRK09054 291 IVALLATGGSTNHTIHLVAMARAAGII------------------LTWDDFSDLSDVVPLLARVYPNGPADVNH 346 (603)
T ss_pred HHHHhccCccccHHHHHHHHHHHcCCC------------------CCHHHHHHHhccCCcceeecCCCcchHHH
Confidence 344566666666655 477777775 45677888888899999999999876644
No 364
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.74 E-value=86 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 160 PRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
--+++.++++.+++.|++++.+|+...
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 357888999999999999999999644
No 365
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=21.71 E-value=2.7e+02 Score=18.88 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=24.6
Q ss_pred EEeecCCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 153 VVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 153 ~i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
++...+..........+.++.+++.+.+++-...
T Consensus 3 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 36 (115)
T cd01653 3 VLLFPGFEELELASPLDALREAGAEVDVVSPDGG 36 (115)
T ss_pred EEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC
Confidence 3444444444677888899999999999887654
No 366
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.67 E-value=1e+02 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEeecCCCchhHHHHHHHHHhCCCeEEEE
Q psy885 153 VVGMLDPPRKEVFDSIARCRAAGIRVIVI 181 (270)
Q Consensus 153 ~i~~~d~lr~~~~~~I~~l~~agi~v~ml 181 (270)
++++.+.-++...+.++.|++.|+++.++
T Consensus 146 ~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 146 IIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp EE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred EEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 34566667888899999999999998875
No 367
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=21.38 E-value=2.4e+02 Score=26.11 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=26.9
Q ss_pred eEEEecChhhHHHHHHHHhhCCCEEEEECCcHhhhhh
Q psy885 231 RLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGKTELR 267 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~ND~~a 267 (270)
.+.-..||.+|..=++ ..|.-|...|+-.+|+-+
T Consensus 102 IvMP~~tp~~Kv~a~r---~~GaeVil~g~~~dda~~ 135 (347)
T COG1171 102 IVMPETTPKIKVDATR---GYGAEVILHGDNFDDAYA 135 (347)
T ss_pred EEecCCCcHHHHHHHH---hcCCEEEEECCCHHHHHH
Confidence 5666889999976554 558899999999998754
No 368
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.36 E-value=5.3e+02 Score=25.25 Aligned_cols=33 Identities=15% Similarity=-0.131 Sum_probs=26.8
Q ss_pred ceEEEecChhhHHHHHHHHhhCCCEEEEECCcHh
Q psy885 230 ARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTGK 263 (270)
Q Consensus 230 ~~v~ar~tP~~K~~iV~~lq~~g~~V~miGDG~N 263 (270)
..++.-.++++=...|+.+++.|.. +++||++-
T Consensus 123 i~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~ 155 (526)
T TIGR02329 123 IVQRSYVTEEDARSCVNDLRARGIG-AVVGAGLI 155 (526)
T ss_pred eEEEEecCHHHHHHHHHHHHHCCCC-EEECChHH
Confidence 3788889999999999999999964 45688754
No 369
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.24 E-value=2e+02 Score=27.32 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 162 ~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
+...+.=+.|++.|+++++..||.......++++.++.
T Consensus 78 esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~ 115 (454)
T TIGR00591 78 GGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAA 115 (454)
T ss_pred HHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCC
Confidence 45566667888999999999999999999999988875
No 370
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=21.21 E-value=2.1e+02 Score=25.98 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=35.1
Q ss_pred EEEEEEeecCC---CchhHHHHHHHHHhCCCeEEEE-----cCCCHHHH-------HHHHHHhCC
Q psy885 149 TFVGVVGMLDP---PRKEVFDSIARCRAAGIRVIVI-----TGDNKATA-------EAICRRIGV 198 (270)
Q Consensus 149 ~~lG~i~~~d~---lr~~~~~~I~~l~~agi~v~ml-----TGD~~~ta-------~~iA~~~gi 198 (270)
..+++-.=..+ +.|.+.+++++|.+.|++-+++ +-|+.+|- ...|.++|+
T Consensus 225 ~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~ 289 (316)
T PF00762_consen 225 WRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGG 289 (316)
T ss_dssp EEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCC
Confidence 34444443344 7899999999999999865444 68998886 455777787
No 371
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.20 E-value=4.7e+02 Score=21.49 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhc-------cCceEEEec
Q psy885 164 VFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAV-------ARARLFSRV 236 (270)
Q Consensus 164 ~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~-------~~~~v~ar~ 236 (270)
+...++.+.+.|.++.++ |..+.++...++.+.-.-+ ++.+.|. .-.+.+++...++ .+..+.+=-
T Consensus 37 ~~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP-----~l~i~g~-~g~f~~~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYP-----KLKIVGA-FGPLEPEERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCC-----CCEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346677777888999998 6677777777766532211 1233443 3334333322222 356777888
Q ss_pred ChhhHHHHHHHHhhCCCEEEE-ECC
Q psy885 237 EPAHKSKIVEFLQGMNEISAM-DSS 260 (270)
Q Consensus 237 tP~~K~~iV~~lq~~g~~V~m-iGD 260 (270)
+|.|=..+-+..+..+..|+| ||.
T Consensus 110 ~PkQE~~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 110 CPKQEIWMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred CcHhHHHHHHhHHhCCCcEEEEece
Confidence 999887665554554444444 554
No 372
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=21.15 E-value=3.7e+02 Score=23.89 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=37.2
Q ss_pred EeecCCCchhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCC
Q psy885 154 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT 200 (270)
Q Consensus 154 i~~~d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~ 200 (270)
+.-.|.+.+...+-|..|+..|++.+++-|--++.-..+ ++.|+.+
T Consensus 13 ~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l-~~~gie~ 58 (265)
T COG0548 13 AMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEML-AKLGIEP 58 (265)
T ss_pred eecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHH-HHcCCCC
Confidence 333445799999999999999999999999999887665 4678764
No 373
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.15 E-value=4.9e+02 Score=23.30 Aligned_cols=32 Identities=3% Similarity=-0.039 Sum_probs=23.3
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.-|.-+||.-=.++++.+.- .|..|+++|-+.
T Consensus 133 ~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~ 166 (282)
T PRK14169 133 PTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSN 166 (282)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 44677888877777776642 488999999763
No 374
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.07 E-value=4.5e+02 Score=23.58 Aligned_cols=47 Identities=6% Similarity=-0.010 Sum_probs=29.4
Q ss_pred hcCCCHHHHHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCc
Q psy885 215 FDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSST 261 (270)
Q Consensus 215 ~~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG 261 (270)
++.++...+.++...-..|.-+||.-=.+|++.+.- .|..|+++|-+
T Consensus 119 VDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS 167 (284)
T PRK14190 119 VDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNIDISGKHVVVVGRS 167 (284)
T ss_pred ccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCC
Confidence 333433333344433345778888877777776642 48899999976
No 375
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=21.01 E-value=81 Score=29.94 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHhCCCe-EEEEcCCCHHH
Q psy885 161 RKEVFDSIARCRAAGIR-VIVITGDNKAT 188 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~-v~mlTGD~~~t 188 (270)
..+-.++++.|++.+++ |++||||-...
T Consensus 349 ~~er~~Ll~~l~~~~~~~vV~LSGDvH~~ 377 (453)
T PF09423_consen 349 PAERQRLLDFLRESGIRNVVFLSGDVHAS 377 (453)
T ss_dssp HHHHHHHHHHHHHTT---EEEEE-SSSSE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEecCcchh
Confidence 45667888999999998 99999997544
No 376
>KOG3167|consensus
Probab=20.91 E-value=86 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCH
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNK 186 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~ 186 (270)
..+|.|++++.+.+++.---+.+++||..
T Consensus 58 k~lrrGvKevqK~vrkGeKGl~VlAgd~s 86 (153)
T KOG3167|consen 58 KGLRRGVKEVQKRVRKGEKGLCVLAGDTS 86 (153)
T ss_pred hhHHHHHHHHHHHHhcCCcceEEEecCCc
Confidence 44799999999999999888999999974
No 377
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.87 E-value=5.1e+02 Score=23.34 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=22.8
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
.-|.-+||.-=.++++.+.- .|..|+++|-+.
T Consensus 136 ~~~~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~ 169 (295)
T PRK14174 136 KCFVSCTPYGILELLGRYNIETKGKHCVVVGRSN 169 (295)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCC
Confidence 34677888876666665542 489999999764
No 378
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=20.84 E-value=2.5e+02 Score=21.67 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=33.8
Q ss_pred cCCeEEEEEEeecCCCc--hhHHHHHHHHHhCCCeEEEEcCC
Q psy885 145 EVNLTFVGVVGMLDPPR--KEVFDSIARCRAAGIRVIVITGD 184 (270)
Q Consensus 145 e~~l~~lG~i~~~d~lr--~~~~~~I~~l~~agi~v~mlTGD 184 (270)
..+..|+|=+++.-.+| +++...+..+++.|++.+++-=+
T Consensus 79 ~~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~~vivP~~ 120 (121)
T PF13541_consen 79 PEDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFKRVIVPKA 120 (121)
T ss_pred CCCEEEEEEecCCccEEecCcHHHHHHHHHHCCCCEEEeCCC
Confidence 46899999999999999 57888889999999988777543
No 379
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=20.83 E-value=3.3e+02 Score=24.67 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=43.4
Q ss_pred EEEEEEeecC--CCchhHHHHHHHHHhCCCeE----EEEcC--CCHHHHHHHHHHh---CCCCCCCCccceeeechhhcC
Q psy885 149 TFVGVVGMLD--PPRKEVFDSIARCRAAGIRV----IVITG--DNKATAEAICRRI---GVFTEEEDTTGKSYSGREFDD 217 (270)
Q Consensus 149 ~~lG~i~~~d--~lr~~~~~~I~~l~~agi~v----~mlTG--D~~~ta~~iA~~~---gi~~~~~~~~~~~i~G~~~~~ 217 (270)
..+..+.+.. ++-+.+.++|+.|+++|+.+ +++.| |+..+...+.+.+ |+.+-- .....-+|
T Consensus 205 ~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyy--l~~~~p~g----- 277 (321)
T TIGR03821 205 QTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYY--LHLLDKVQ----- 277 (321)
T ss_pred cEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCc--ccccCCCC-----
Confidence 3444445533 35566777777777777754 33445 5666655555333 443210 00000011
Q ss_pred CCHHHHHHhccCceEEEecChhhHHHHHHHHhhC
Q psy885 218 LPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGM 251 (270)
Q Consensus 218 l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~~ 251 (270)
... ..++++++=.++++.+++.
T Consensus 278 -----------g~~-~f~v~~~~~~~i~~~l~~~ 299 (321)
T TIGR03821 278 -----------GAA-HFDVDDERARALMAELLAR 299 (321)
T ss_pred -----------Ccc-cccCCHHHHHHHHHHHHHh
Confidence 001 2467888888888888764
No 380
>COG3411 Ferredoxin [Energy production and conversion]
Probab=20.72 E-value=1.3e+02 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEecChhhHHHHHHHHhhCCCEE
Q psy885 231 RLFSRVEPAHKSKIVEFLQGMNEIS 255 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq~~g~~V 255 (270)
..|.|++|++--+||+..-..|..|
T Consensus 27 vWY~~V~p~~a~rIv~~hl~~Gr~V 51 (64)
T COG3411 27 VWYTRVDPEDARRIVQSHLLGGRPV 51 (64)
T ss_pred eeEeccCHHHHHHHHHHHHhCCCcc
Confidence 8899999999999999987777655
No 381
>PLN02389 biotin synthase
Probab=20.65 E-value=5.9e+02 Score=23.73 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhh
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAH 240 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~ 240 (270)
.+.+.++++.+++.++.+..-.|--......--++.|+.. +.+ .++. ..+.+. .+....++++
T Consensus 152 ~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~---------~~~-~LeT-s~~~y~------~i~~~~s~e~ 214 (379)
T PLN02389 152 FNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTA---------YNH-NLDT-SREYYP------NVITTRSYDD 214 (379)
T ss_pred HHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCE---------EEe-eecC-ChHHhC------CcCCCCCHHH
Confidence 4677788888887788877667765555555555677752 111 1111 111111 2334558999
Q ss_pred HHHHHHHHhhCCCEE
Q psy885 241 KSKIVEFLQGMNEIS 255 (270)
Q Consensus 241 K~~iV~~lq~~g~~V 255 (270)
+.+.++.+++.|..|
T Consensus 215 rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 215 RLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHHcCCeE
Confidence 999999999987544
No 382
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.65 E-value=4.3e+02 Score=23.70 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=23.4
Q ss_pred eEEEecChhhHHHHHHHHh--hCCCEEEEECCcH
Q psy885 231 RLFSRVEPAHKSKIVEFLQ--GMNEISAMDSSTG 262 (270)
Q Consensus 231 ~v~ar~tP~~K~~iV~~lq--~~g~~V~miGDG~ 262 (270)
..|.-+||.-=.++++.+. =.|..|+++|-|.
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~ 168 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSH 168 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCc
Confidence 4567788887777776653 2489999999874
No 383
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=20.58 E-value=3.8e+02 Score=24.66 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCC-e-EEEEcCCCHHHHH-HHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecChhh
Q psy885 164 VFDSIARCRAAGI-R-VIVITGDNKATAE-AICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAH 240 (270)
Q Consensus 164 ~~~~I~~l~~agi-~-v~mlTGD~~~ta~-~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP~~ 240 (270)
+...|..+.+.|. + ++-.|.-|...+. ..|+.+|+... .+.-+.+|..
T Consensus 35 a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~-----------------------------iv~p~~~~~~ 85 (380)
T TIGR01127 35 ALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAV-----------------------------IVMPESAPPS 85 (380)
T ss_pred HHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEE-----------------------------EEEcCCCcHH
Confidence 3444555555553 2 4444554544444 45677887521 3444566766
Q ss_pred HHHHHHHHhhCCCEEEEECCcHhhhh
Q psy885 241 KSKIVEFLQGMNEISAMDSSTGKTEL 266 (270)
Q Consensus 241 K~~iV~~lq~~g~~V~miGDG~ND~~ 266 (270)
|. +.++..|..|-.+|+...++.
T Consensus 86 k~---~~~~~~GA~V~~~~~~~~~a~ 108 (380)
T TIGR01127 86 KV---KATKSYGAEVILHGDDYDEAY 108 (380)
T ss_pred HH---HHHHHCCCEEEEECCCHHHHH
Confidence 64 445566888888888766654
No 384
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=20.55 E-value=3.3e+02 Score=23.01 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=26.5
Q ss_pred eEEEEEEeecCCCchhHHHHHHHHHh---CCC-eEEEEcCCCHHHHHHHHHHhCCC
Q psy885 148 LTFVGVVGMLDPPRKEVFDSIARCRA---AGI-RVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 148 l~~lG~i~~~d~lr~~~~~~I~~l~~---agi-~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
-.++|++.....+|.=.++..+.+.+ .++ +|.+.+...+.....+++++++.
T Consensus 24 ad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d 79 (210)
T PRK01222 24 ADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLD 79 (210)
T ss_pred CCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 34666665455665433333333332 123 44455555666666666666553
No 385
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.52 E-value=1.8e+02 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhCCCeEEE
Q psy885 160 PRKEVFDSIARCRAAGIRVIV 180 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~v~m 180 (270)
..|.+.++++.|.+.|++-++
T Consensus 43 ~~P~i~~~l~~l~~~g~~~vv 63 (101)
T cd03409 43 LGPDTEEAIRELAEEGYQRVV 63 (101)
T ss_pred CCCCHHHHHHHHHHcCCCeEE
Confidence 678899999999999985433
No 386
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.50 E-value=4.9e+02 Score=23.50 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=26.3
Q ss_pred HHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 223 QKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 223 ~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
+.++...-.-|.-+||.-=.++++.++- .|..|+++|-+.
T Consensus 126 ~g~l~~g~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~ 167 (297)
T PRK14167 126 VGRLVAGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSD 167 (297)
T ss_pred hHHHhCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCc
Confidence 3333333345677888877777776642 489999999763
No 387
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=20.45 E-value=5.1e+02 Score=25.33 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhCCCeEEEEcC--CCH---HHHHHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecC
Q psy885 163 EVFDSIARCRAAGIRVIVITG--DNK---ATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVE 237 (270)
Q Consensus 163 ~~~~~I~~l~~agi~v~mlTG--D~~---~ta~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~t 237 (270)
=+++.+++|.+.|++|++=+| ... ..... +.=+.|.+...-..+-+|-. +..-+.++.+.+.+...+++-..
T Consensus 17 ltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~-~aGA~I~~~~~~~~adiIlk--V~~P~~~e~~~l~~g~tli~~l~ 93 (511)
T TIGR00561 17 ATPKTVQQLLKLGFDVLVETGAGAKASFADRAFE-SAGAGIVDGTLFWQSDIILK--VNAPSDAEIAELPAGKALVSFIW 93 (511)
T ss_pred cCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHH-HcCCEEecccchhcCCEEEE--eCCCCHHHHHhcCCCCEEEEEcC
Confidence 367889999999999999998 211 11111 11122222110000001110 22334566777777778889899
Q ss_pred hhhHHHHHHHHhhCCCEE
Q psy885 238 PAHKSKIVEFLQGMNEIS 255 (270)
Q Consensus 238 P~~K~~iV~~lq~~g~~V 255 (270)
|.|-.++++.|.+++-.+
T Consensus 94 p~~n~~ll~~l~~k~it~ 111 (511)
T TIGR00561 94 PAQNPELMEKLAAKNITV 111 (511)
T ss_pred ccCCHHHHHHHHHcCCEE
Confidence 999999999999887443
No 388
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=20.40 E-value=2.2e+02 Score=26.70 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=39.1
Q ss_pred EEEEeecCCCchhHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHhCCC
Q psy885 151 VGVVGMLDPPRKEVFDSIARCRAAGIRVIV-ITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 151 lG~i~~~d~lr~~~~~~I~~l~~agi~v~m-lTGD~~~ta~~iA~~~gi~ 199 (270)
+.++.+.+..++.+.+..+.|+++|+++.+ .++++..-...-|...|+.
T Consensus 277 V~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~GaP 326 (387)
T PRK14938 277 VRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIP 326 (387)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 345556677888899999999999999988 4577777777888888875
No 389
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=20.38 E-value=5.1e+02 Score=25.33 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhCCCeEEEEcC--CCHHHHHHHHHHhC--CCCCCCCccceeeechhhcCCCHHHHHHhccCceEEEecCh
Q psy885 163 EVFDSIARCRAAGIRVIVITG--DNKATAEAICRRIG--VFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEP 238 (270)
Q Consensus 163 ~~~~~I~~l~~agi~v~mlTG--D~~~ta~~iA~~~g--i~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~ar~tP 238 (270)
=+++.+++|.+.|++|++=+| +.....-.-=.+.| |.+..+-+.+-++-. +..-..++...+.+...+++-..|
T Consensus 18 ltP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilk--V~~P~~~e~~~l~~g~~li~~l~p 95 (509)
T PRK09424 18 ATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILK--VNAPSDDEIALLREGATLVSFIWP 95 (509)
T ss_pred cCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEE--eCCCCHHHHHhcCCCCEEEEEeCc
Confidence 368889999999999999998 22211111001222 222111011111111 123345666777777789999999
Q ss_pred hhHHHHHHHHhhCCCEEE
Q psy885 239 AHKSKIVEFLQGMNEISA 256 (270)
Q Consensus 239 ~~K~~iV~~lq~~g~~V~ 256 (270)
.+-.++++.|.++|-.+.
T Consensus 96 ~~~~~l~~~l~~~~it~i 113 (509)
T PRK09424 96 AQNPELLEKLAARGVTVL 113 (509)
T ss_pred ccCHHHHHHHHHcCCEEE
Confidence 988999999998875544
No 390
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=20.37 E-value=6.4e+02 Score=22.72 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 161 r~~~~~~I~~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
.+.+.++++-|-..|..++++=.....++..+|+.+.+.
T Consensus 87 gEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vP 125 (305)
T PRK00856 87 GETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVP 125 (305)
T ss_pred CcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCC
Confidence 467777888888888888888777888888999887765
No 391
>KOG2448|consensus
Probab=20.36 E-value=1.9e+02 Score=26.99 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCCchhHHHHHHHHHhCCCeEEEEcCCCHHHH---HHHHHHhCCCCCCCCccceeeechhhcCCCHHHHHHhccCceEEE
Q psy885 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATA---EAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFS 234 (270)
Q Consensus 158 d~lr~~~~~~I~~l~~agi~v~mlTGD~~~ta---~~iA~~~gi~~~~~~~~~~~i~G~~~~~l~~~~~~~~~~~~~v~a 234 (270)
+.++|.-.-+-+.+++| +-.+|.+|.....+ ++||+.+|+. |+.+.++++.......+
T Consensus 282 ~dikprdi~t~~afena-mv~vmalggstnavlhliaia~svg~~------------------ltlddfq~vsd~tpfia 342 (596)
T KOG2448|consen 282 MDIKPRDIITPKAFENA-MVSVMALGGSTNAVLHLIAIARSVGLE------------------LTLDDFQKVSDATPFIA 342 (596)
T ss_pred cCCChhhccCHHHHhhh-hhheeeccCcchhHHHHHHHHHhcCce------------------ecHHHHhhhccCCccee
Confidence 34444433344445555 33456666665444 4688888885 34466677777778999
Q ss_pred ecChhhHHHHHH
Q psy885 235 RVEPAHKSKIVE 246 (270)
Q Consensus 235 r~tP~~K~~iV~ 246 (270)
.+.|..|+-.-.
T Consensus 343 d~kpsgkyvmed 354 (596)
T KOG2448|consen 343 DLKPSGKYVMED 354 (596)
T ss_pred ccCCcchhHHHH
Confidence 999999975433
No 392
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=20.33 E-value=1.2e+02 Score=27.11 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=32.9
Q ss_pred EEEEEeecCCCchhHHHHHHHHHhCCC-eEEEEcCCCH
Q psy885 150 FVGVVGMLDPPRKEVFDSIARCRAAGI-RVIVITGDNK 186 (270)
Q Consensus 150 ~lG~i~~~d~lr~~~~~~I~~l~~agi-~v~mlTGD~~ 186 (270)
.+--+.-.|.-|.+..+.++.+.+.|| .+..+|||.+
T Consensus 80 ~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp 117 (291)
T COG0685 80 PIPHLTCRDRNRIEIISILKGAAALGIRNILALRGDPP 117 (291)
T ss_pred cceeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCC
Confidence 667778888999999999999999999 5788999985
No 393
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.18 E-value=4.7e+02 Score=23.48 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=29.0
Q ss_pred cCCCHHHHHHhccCceEEEecChhhHHHHHHHHhh--CCCEEEEECCcH
Q psy885 216 DDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQG--MNEISAMDSSTG 262 (270)
Q Consensus 216 ~~l~~~~~~~~~~~~~v~ar~tP~~K~~iV~~lq~--~g~~V~miGDG~ 262 (270)
+.++...+.++...-..|.-+||.-=.++++.+.- .|..|+++|-|.
T Consensus 121 DGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~ 169 (285)
T PRK10792 121 DGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASN 169 (285)
T ss_pred CccChhhHhHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCc
Confidence 33333333333333345677888877777776542 388999999874
No 394
>PRK00035 hemH ferrochelatase; Reviewed
Probab=20.10 E-value=2.3e+02 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHhCCCe-EEE----EcCCCHHHHHHHH
Q psy885 160 PRKEVFDSIARCRAAGIR-VIV----ITGDNKATAEAIC 193 (270)
Q Consensus 160 lr~~~~~~I~~l~~agi~-v~m----lTGD~~~ta~~iA 193 (270)
+.|.+.++++.|.+.|++ |++ .+.|+.+|-..++
T Consensus 246 l~P~~~~~l~~l~~~g~k~V~v~P~~Fv~D~lEtl~ei~ 284 (333)
T PRK00035 246 LEPYTDDTLEELAEKGVKKVVVVPPGFVSDHLETLEEID 284 (333)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEECCeeeccchhHHHHHH
Confidence 779999999999999974 333 3679988755444
No 395
>KOG0952|consensus
Probab=20.09 E-value=1e+02 Score=32.77 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCchhHHHHHH----HHHhCCCeEEEEcCCCHHHHHHHHHHhCCC
Q psy885 159 PPRKEVFDSIA----RCRAAGIRVIVITGDNKATAEAICRRIGVF 199 (270)
Q Consensus 159 ~lr~~~~~~I~----~l~~agi~v~mlTGD~~~ta~~iA~~~gi~ 199 (270)
|.|.=+.+..+ +|.-.||+|.++|||...+...|+ .|.|+
T Consensus 172 PmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~tei~-~tqii 215 (1230)
T KOG0952|consen 172 PMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTEIA-DTQII 215 (1230)
T ss_pred chHHHHHHHHHHHhhhcccccceEEEecCcchhhHHHHH-hcCEE
Confidence 55655555554 444559999999999999999955 66655
Done!