RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy885
(270 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 277 bits (712), Expect = 4e-87
Identities = 136/259 (52%), Positives = 168/259 (64%), Gaps = 19/259 (7%)
Query: 14 NPPNHCVSFSGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPK 73
N N V + E+A A + KKEFTLEFSRDRKSMS YC+P S + G K
Sbjct: 454 NVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSP-AKSSRAAVGNK 512
Query: 74 LFVKGAPEGVLERCTHARIGSQKVSLKD------FSANTRF----ENLRSLEPKSKVSAI 123
+FVKGAPEGV++RC + R+G+ +V + S + + LR L A
Sbjct: 513 MFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCL-----ALAT 567
Query: 124 VPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITG 183
K E+M L DS++F YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITG
Sbjct: 568 RDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITG 627
Query: 184 DNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSK 243
DNK TA AICRRIG+F E E+ ++Y+GREFDDLPL+EQ+ A RA F+RVEP+HKSK
Sbjct: 628 DNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSK 687
Query: 244 IVEFLQGMNEISAMDSSTG 262
IVE+LQ +EI+AM TG
Sbjct: 688 IVEYLQSYDEITAM---TG 703
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 191 bits (487), Expect = 1e-55
Identities = 70/270 (25%), Positives = 104/270 (38%), Gaps = 48/270 (17%)
Query: 27 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLER 86
E + ++ K + F+ K S L +KGAPE VLER
Sbjct: 471 ELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIH---TLEDPRDPRHVLVMKGAPERVLER 527
Query: 87 CTHARIGSQKVSLKD------FSANTRF--ENLRSLEPKSKVSAI----VPWGMKPEDMN 134
C+ I Q++ L + +A R L + P
Sbjct: 528 CSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVL-------GFCQLYLSEKDYPPGYA 580
Query: 135 LADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR 194
D L+F G+V M+DPPR V D++ +CR AGIRVI++TGD+ TA+AI
Sbjct: 581 F-DVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAA 639
Query: 195 RIGVFTEEEDTTGKSY--------------------SGREFDDLPLSEQKAAVARAR--L 232
+G+ +E +T +G + D+ SE A+ +
Sbjct: 640 SVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMV 699
Query: 233 FSRVEPAHKSKIVEFLQGMNEISAMDSSTG 262
F+R P K IVE Q + I A+ TG
Sbjct: 700 FARTSPQQKLVIVESCQRLGAIVAV---TG 726
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 172 bits (437), Expect = 8e-49
Identities = 68/270 (25%), Positives = 107/270 (39%), Gaps = 48/270 (17%)
Query: 27 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLER 86
E Q + + K + F+ K S ++ K S L +KGAPE +L+R
Sbjct: 466 ELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIH---ENEKSSESRYLLVMKGAPERILDR 522
Query: 87 CTHARIGSQKVSLKDF------SANTRF--ENLRSLEPKSKVSAI----VPWGMKPEDMN 134
C+ + + LK+ +A R L +P E
Sbjct: 523 CSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVL-------GFCHFALPEDKYNEGYP 575
Query: 135 LADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR 194
D+ + +L FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ TA+AI +
Sbjct: 576 F-DADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAK 634
Query: 195 RIGVFTEEEDTTGKSY--------------------SGREFDDLPLSEQKAAVARARL-- 232
+G+ +E +T G + DL +
Sbjct: 635 GVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIV 694
Query: 233 FSRVEPAHKSKIVEFLQGMNEISAMDSSTG 262
F+R P K IVE Q I A+ TG
Sbjct: 695 FARTSPQQKLIIVEGCQRQGAIVAV---TG 721
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 153 bits (389), Expect = 2e-42
Identities = 51/231 (22%), Positives = 85/231 (36%), Gaps = 36/231 (15%)
Query: 34 QDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIG 93
+ V +K+K F K + + + VKGAP VL+
Sbjct: 437 KSVLSKYKVLQFHPFDPVSKKVVAVV------ESPQGERITCVKGAPLFVLKTVEEDHPI 490
Query: 94 SQKVSLKDFSANTRF--ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFV 151
++V + F RSL + K E + +
Sbjct: 491 PEEVDQAYKNKVAEFATRGFRSL-------GV---ARKRG-------------EGSWEIL 527
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYS 211
G++ +DPPR + + ++ + G+ + ++TGD A R++G+ T + +
Sbjct: 528 GIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYN--AERLG 585
Query: 212 GREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTG 262
D+P SE V A F+ V P HK +VE LQ + AM TG
Sbjct: 586 LGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAM---TG 633
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 152 bits (385), Expect = 7e-42
Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 31/237 (13%)
Query: 28 QAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERC 87
+A ++ ++ L F+ K + GS KGAPE +LE
Sbjct: 380 GMLADPKEARAGIREVHFLPFNPVDKRTALTY------IDGSGNWHRVSKGAPEQILELA 433
Query: 88 THARIGSQKVSLKDFSANTRF--ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYE 145
+ S+KV S ++ LRSL A+ + +S
Sbjct: 434 KASNDLSKKVL----SIIDKYAERGLRSL-------AV---ARQVVPEKTKESP-----G 474
Query: 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT 205
FVG++ + DPPR + ++I R G+ V +ITGD A + RR+G+ T
Sbjct: 475 APWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYP- 533
Query: 206 TGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDSSTG 262
+ + +L + + +A F+ V P HK +IV+ LQ I M TG
Sbjct: 534 SSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGM---TG 587
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 72.2 bits (178), Expect = 7e-16
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 26/136 (19%)
Query: 34 QDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIG 93
+ + ++W+K + F +R+ MS + +L KGA + +L C+ R
Sbjct: 50 RSLASRWQKIDEIPFDFERRRMSVVV------AENTEHHQLVCKGALQEILNVCSQVRHN 103
Query: 94 SQKVSLKD------FSANTRF--ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYE 145
+ V L D + LR + A + D AD E
Sbjct: 104 GEIVPLDDIMLRKIKRVTDTLNRQGLRVV-----AVATKYLPAREGDYQRAD-------E 151
Query: 146 VNLTFVGVVGMLDPPR 161
+L G + LD
Sbjct: 152 SDLILEGYIAFLDHHH 167
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 60.9 bits (149), Expect = 3e-11
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 31/112 (27%)
Query: 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT 205
+N + + D PR + D + + + G+++I+++GD + + + + + +
Sbjct: 123 INGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------- 175
Query: 206 TGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAM 257
+S + P K +I+E L+ M
Sbjct: 176 ------------------------QEYYSNLSPEDKVRIIEKLKQNGNKVLM 203
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 59.9 bits (146), Expect = 2e-10
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 31/112 (27%)
Query: 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT 205
V+ V ++ + DP + ++I + +GI ++++TGD+K TAEA+ +G+
Sbjct: 541 VDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI------- 593
Query: 206 TGKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAM 257
++ + + P KS+IV L+ I AM
Sbjct: 594 ------------------------KKVVAEIMPEDKSRIVSELKDKGLIVAM 621
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 58.2 bits (142), Expect = 3e-10
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 150 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
GV+ + D R E ++I++ +A GI+ +++TGDN+ A+ + +G+
Sbjct: 135 VSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL 183
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 56.7 bits (138), Expect = 1e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 150 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 154 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 202
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 56.4 bits (137), Expect = 2e-09
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
N G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 444 RNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 496
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 55.6 bits (135), Expect = 4e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 150 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 526 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 574
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 5e-09
Identities = 45/234 (19%), Positives = 69/234 (29%), Gaps = 89/234 (38%)
Query: 5 FSVKKYSNSNPPNHCVSFSGRREQAIAVR---QDVETKWKKEFTLE--FSRDRKSMSSYC 59
FS+ +NP N + F G + + I ET + E F + +SY
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 60 TPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKDFSANT----------RFE 109
F + +G+L T T FE
Sbjct: 1719 ---------------F--RSEKGLLSA-T---------------QFTQPALTLMEKAAFE 1745
Query: 110 NLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFA--S---Y-------EVNLTF---VGVV 154
+L+S G+ P D FA S Y +V ++ V VV
Sbjct: 1746 DLKS------------KGLIPAD------ATFAGHSLGEYAALASLADV-MSIESLVEVV 1786
Query: 155 ---GML---DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEE 202
GM PR E+ S A + + +A + + R+G T
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-LQYVVERVGKRTGW 1839
Score = 39.6 bits (92), Expect = 8e-04
Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 101/270 (37%)
Query: 54 SMSSYCTPLKSSKLGSSGPKLF--VKGA---PEGVLERCTHARIGSQKVSLKDFSANTR- 107
++ Y K LG + +L +KGA +G++ A ++ S + F + R
Sbjct: 245 QLAHYVVTAKL--LGFTPGELRSYLKGATGHSQGLVT----AVAIAETDSWESFFVSVRK 298
Query: 108 ------FENLRSLE--PKSKVSAIVPWGMKPEDMNLADSTK----FASYEVNLTFVGVVG 155
F +R E P + + + L DS + S
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSI----------LEDSLENNEGVPSP----------- 337
Query: 156 ML---DPPRKEVFDSIARCRAA-------------GIRVIVITGDNKATAEAIC------ 193
ML + +++V D + + + G + +V++G +++
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG----PPQSLYGLNLTL 393
Query: 194 RRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARARLFSRV-EPAH-------KSKIV 245
R+ K+ SG + +P SE+K R F V P H I
Sbjct: 394 RKA-----------KAPSGLDQSRIPFSERKLKF-SNR-FLPVASPFHSHLLVPASDLIN 440
Query: 246 EFLQGMN-EISAMD-------SSTGKTELR 267
+ L N +A D + G +LR
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGS-DLR 469
Score = 38.9 bits (90), Expect = 0.001
Identities = 36/187 (19%), Positives = 58/187 (31%), Gaps = 43/187 (22%)
Query: 11 SNSNPPNHCVSFSGRREQAIAVRQDVETKWKKEFTLEFSR----DRKSMSSYC-----TP 61
S N + V SG + + + K K L+ SR +RK S +P
Sbjct: 369 SLVNGAKNLV-VSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 62 LKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKVSLKD--FSANTRFENLRSLEPKSK 119
S L A + + + + ++ + +LR L S
Sbjct: 427 FHSHLL---------VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLS-GSI 475
Query: 120 VSAIVPWGM-KPEDMNLADSTKFASYEVNLTF----VGVVGMLDPPRKEVFDSIAR-CRA 173
IV + P K A++ + L F +G+L R
Sbjct: 476 SERIVDCIIRLPVKWETTTQFK-ATH-I-LDFGPGGASGLGVL----------THRNKDG 522
Query: 174 AGIRVIV 180
G+RVIV
Sbjct: 523 TGVRVIV 529
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 56/187 (29%)
Query: 80 PEGVLERCT--HARIGSQKVSLKDFSANTRFENLRSLEPKSKVSAIVPWGMKPEDMNLAD 137
PE VLE +I S D S+N + LR ++++ ++ + +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 138 STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGD---------NKAT 188
V + F+ C+ +++ T T
Sbjct: 252 -------NVQ----------NAKAWNAFN--LSCK-----ILLTTRFKQVTDFLSAATTT 287
Query: 189 AEAICRRIGVFTEEEDTTGKS----YSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKI 244
++ T +E KS Y DLP P S I
Sbjct: 288 HISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLT-----------TNPRRLSII 333
Query: 245 VEFLQGM 251
E ++
Sbjct: 334 AESIRDG 340
Score = 31.0 bits (69), Expect = 0.55
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 193 CRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARA-RLFSRVEPAHKSKIVEFLQGM 251
C+ + +D S E D + K AV+ RLF + + + +F++ +
Sbjct: 35 CKDV------QDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 40.0 bits (94), Expect = 4e-04
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV----FTEEEDTTGKSYSGREFD 216
+ D + AAG ++T N I R GV T+ E G+ Y+GR
Sbjct: 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGR-YTGRIEG 152
Query: 217 DLPLSEQKAAVARA 230
E K
Sbjct: 153 TPSFREGKVVRVNQ 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.081
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 12/32 (37%)
Query: 6 SVKKYSNSNPPNHCVSFSGRREQAIAVRQDVE 37
S+K Y++ + P A+A++ +E
Sbjct: 28 SLKLYADDSAP------------ALAIKATME 47
Score = 31.1 bits (69), Expect = 0.17
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 20/49 (40%)
Query: 33 RQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPE 81
+Q + KK L+ S+ Y S P L +K E
Sbjct: 19 KQAL----KK---LQ-----ASLKLY-AD-------DSAPALAIKATME 47
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 31.4 bits (72), Expect = 0.28
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAE-------AICRRIG 197
L + G + D + C G+ V+ G A AE A RRI
Sbjct: 71 KLKIISQTGRVSRDAGGHID-LEACTDKGVVVLEGKGSPVAPAELTWALVMAAQRRIP 127
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 30.5 bits (69), Expect = 0.29
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 150 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199
+ GV+ D ++ + +A + G+ ++++ D A R +
Sbjct: 9 YAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN 58
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.33
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 20/75 (26%)
Query: 156 MLDPP--------RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE--DT 205
M+ R + + C + I + + +C G+ ++ DT
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERF-SEGDVVCALCGLVLSDKLVDT 59
Query: 206 TGKSYSG---REFDD 217
R F +
Sbjct: 60 ------RSEWRTFSN 68
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 30.6 bits (70), Expect = 0.46
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 156 MLDPP-RKEVFDSIARCRAAGIRVIVIT 182
LD + ++ + + + G VI+I+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILIS 195
>2o2x_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 30.4 bits (69), Expect = 0.51
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 203
R ++ +IA AGI V+V+T N++ I R G F
Sbjct: 57 LRPQMLPAIATANRAGIPVVVVT--NQS---GIAR--GYFGWSA 93
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 30.4 bits (68), Expect = 0.53
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 146 VNLT---FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
+NLT F G+ + + R ++ ++TG + A +++
Sbjct: 19 LNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSA 68
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 29.9 bits (68), Expect = 0.54
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 164 VFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 203
+IAR A V++ T N++ + R G+F
Sbjct: 32 SLQAIARLTQADWTVVLAT--NQS---GLAR--GLFDTAT 64
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.4 bits (69), Expect = 0.58
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 171 CRAAGIRVIVITGDNKATAE--AICRRIG---VFTEEED 204
+ I + D E A + +G V TE+++
Sbjct: 188 GKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQN 226
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 30.0 bits (68), Expect = 0.68
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 173 AAGIRVIVITGDNK----ATAEAICRRIGV 198
++GI V ++TG NK A +CR
Sbjct: 1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSG 30
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 30.3 bits (69), Expect = 0.69
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 13/39 (33%)
Query: 162 KEVFDSIAR----CRAAGIRVI---------VITGDNKA 187
K+V + IAR RAAGI ++ VITG KA
Sbjct: 315 KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA 353
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 30.0 bits (68), Expect = 0.71
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 109 ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSI 168
E + S P K+S +V + S A Y ++T V I
Sbjct: 182 EYMHSQYPDIKLSYLVETKGTLKKQLEKLSFTPAVYSPDVTLV------SK------KDI 229
Query: 169 ARCRAAGIRVIVITGDNKATAEAICRRIGV 198
G+RVI T + K E +GV
Sbjct: 230 DAAHKLGMRVIPWTVNTKEEIET-LISLGV 258
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 30.4 bits (69), Expect = 0.74
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 13/39 (33%)
Query: 162 KEVFDSIAR----CRAAGIRVI---------VITGDNKA 187
K+V + IAR RAAGI +I VITG KA
Sbjct: 361 KKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA 399
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 29.7 bits (67), Expect = 0.91
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 30/77 (38%)
Query: 158 DPPRKEVFDSIARCRAAGI---RVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGRE 214
D R ++ +AG V++ D+ T + +
Sbjct: 54 DATRMDLL------ESAGAAKAEVLINAIDDPQTNLQLTEMV---------------KEH 92
Query: 215 FDDLPLSEQKAAVARAR 231
F L + +ARAR
Sbjct: 93 FPHLQI------IARAR 103
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 29.6 bits (67), Expect = 0.92
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 203
V D++ + G ++V+T N++ I R G FTE +
Sbjct: 51 FIDGVIDAMRELKKMGFALVVVT--NQS---GIAR--GKFTEAQ 87
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomi europe, spine,
hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB:
2obc_A* 2o7p_A*
Length = 402
Score = 29.8 bits (68), Expect = 1.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 153 VVGMLDP-PR---KEVFDSIARCRAAGIRVIV 180
V M DP P+ + + R + AGI V
Sbjct: 124 VASMQDPNPQVAGR----GLYRLQQAGIDVSH 151
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.8 bits (67), Expect = 1.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 163 EVFDSIARCRAAGIRVIVITGDNKATAEAICRR-IGVFTEE 202
E ++S + G+R+ + TGD ++ E + I V T E
Sbjct: 83 EKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSE 123
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 133 MNLADSTKFASYEVNLT---FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATA 189
M D +NLT F G+ + + ++ D I R G++ +ITG N +
Sbjct: 1 MKFIDI------GINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDS 54
Query: 190 E---AICRR 195
+ + +
Sbjct: 55 KDALHLAQT 63
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine
sulfoximine; 2.35A {Acinetobacter baylyi}
Length = 182
Score = 28.7 bits (65), Expect = 1.4
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 168 IARCRAAGIRVIV--ITGDNKA 187
I R + + V+V I N A
Sbjct: 116 IKRAVESEVHVMVGCIDATNVA 137
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
domain and reductase domain, hydrolase, oxidoreductase;
2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
2d5n_A* 3ex8_A*
Length = 373
Score = 29.0 bits (66), Expect = 1.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 153 VVGMLDP-PR---KEVFDSIARCRAAGIRVIV 180
V M DP P + I+ + AGI V
Sbjct: 108 FVAMRDPNPLVAGR----GISMMKEAGIEVRE 135
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics,
unknown function; 1.80A {Bacillus subtilis} SCOP:
d.108.1.1
Length = 175
Score = 28.3 bits (64), Expect = 2.0
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 168 IARCRAAGIRVIV--ITGDNKA 187
+ GIR ++ I G NK
Sbjct: 107 LRIAPNLGIRSLMAFIFGHNKP 128
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 28.7 bits (65), Expect = 2.1
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 133 MNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
M L D VNLT + + + R AG+ +++TG + A +E
Sbjct: 1 MQLIDI------GVNLTN----SSFHDQQAAI---VERALEAGVTQMLLTGTSLAVSEQA 47
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 28.5 bits (64), Expect = 2.2
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 13/83 (15%)
Query: 119 KVSAIVPWGMKPEDMNLADSTKFASYEVNLT---FVGVVGMLDPPRKEVFDSIARCRAAG 175
+ P M D NLT + G +++ + R G
Sbjct: 13 EAQTQGPGSMS-MAQQFIDI------GANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNG 65
Query: 176 IRVIVITGDNKATAE---AICRR 195
+ I+IT + I +
Sbjct: 66 LSHIIITSGCLNDFKKAIEIINK 88
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 28.6 bits (63), Expect = 2.3
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 160 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
P EV + + AG + + TG +G+
Sbjct: 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGL 254
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 28.3 bits (64), Expect = 2.4
Identities = 3/27 (11%), Positives = 13/27 (48%)
Query: 161 RKEVFDSIARCRAAGIRVIVITGDNKA 187
+EV +++ A ++++++
Sbjct: 35 MREVQSALSTAAADDSKLVLLSAVGSV 61
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family,
phosphinothricin, methionine sulfone, methionine
sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A
2j8n_A 2j8r_A* 1yvo_A
Length = 172
Score = 27.9 bits (63), Expect = 2.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 168 IARCRAAGIRVIV--ITGDNKA 187
I R RA G+ V+V I N A
Sbjct: 108 IERARAQGLHVMVAAIESGNAA 129
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 28.3 bits (64), Expect = 2.4
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 18/121 (14%)
Query: 78 GAPEGVLERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSKVSAIVPWGMKPEDMNLAD 137
G E R G + V + F LR P + ++ + L
Sbjct: 106 GLGEEAARRLAALLRGREGVWVSSFDPLAL-LALRKAAPGLPLGFLMA----EDHSALLP 160
Query: 138 STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197
+ + V +A R G+ V+ T + + A +G
Sbjct: 161 CLGVEAVHPHHALV------TEEA------VAGWRKRGLFVVAWTVNEEGEARR-LLALG 207
Query: 198 V 198
+
Sbjct: 208 L 208
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 28.4 bits (64), Expect = 2.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 171 CRAAGIRVIVITGDNKATAE--AICRRIG---VFTEEED 204
A G+R I + D + + +G V TEEE
Sbjct: 188 AAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEEL 226
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 28.7 bits (64), Expect = 2.7
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRR-IGVFTEE 202
+E F G+RV + TGD + E + + I + T E
Sbjct: 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAE 123
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 28.2 bits (64), Expect = 2.8
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 13/61 (21%)
Query: 132 DMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEA 191
+ + D VNLT R +V +A AG+ ++ITG N ++
Sbjct: 2 EYRMFDI------GVNLTS----SQFAKDRDDV---VACAFDAGVNGLLITGTNLRESQQ 48
Query: 192 I 192
Sbjct: 49 A 49
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086,
structural genomics, center for STRU genomics of
infectious diseases; HET: MSE; 1.75A {Salmonella
typhimurium} PDB: 3dr8_A*
Length = 174
Score = 27.5 bits (62), Expect = 2.9
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 168 IARCRAAGIRVIV--ITGDNKA 187
I R G V+V I N A
Sbjct: 108 IDEARRCGKHVMVAGIESQNAA 129
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Length = 175
Score = 27.5 bits (62), Expect = 2.9
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 168 IARCRAAGIRVIV--ITGDNKA 187
I + V++ I +N A
Sbjct: 109 IDHAGGNDVHVLIAAIEAENTA 130
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural
genomics, KDO 8-P phosphatase, structure function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae
RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 27.9 bits (63), Expect = 2.9
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I A I+V V++G + +G+
Sbjct: 44 IKMLMDADIQVAVLSGRDSPILRRRIADLGI 74
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 28.0 bits (63), Expect = 3.0
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 151 VGVVGMLDPPR--------KEVFDSIARCRAAGIRVIVITGDNKA 187
+GV+ M D + + ++I + +VI G+++
Sbjct: 15 IGVIRMDDGKVNVLGPTMQQALNEAIDAADRDNVGALVIAGNHRV 59
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 27.9 bits (63), Expect = 3.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 161 RKEVFDSIARCRAAGIRVIVITGDNKA 187
+E+ +I + R IV+TG A
Sbjct: 50 VEELTQAIRKAGDGSARAIVLTGQGTA 76
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme structural
genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB:
2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 27.6 bits (62), Expect = 3.1
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 164 VFDSIARCRAAGIRVIVIT 182
V + + + AG ++++IT
Sbjct: 47 VIPQLLKLQKAGYKLVMIT 65
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 27.9 bits (63), Expect = 3.2
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKA 187
+ + D + + ++V G +
Sbjct: 37 EALIDGVDAAHREQVPLLVFAGAGRN 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 3.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 28 QAIAVRQDVET--KWKKEFTLEFS-RDRKS 54
QA + Q+ E+ KW++E D S
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAAS 105
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 27.9 bits (63), Expect = 3.3
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 157 LDPP-RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
LD +EV + + G+ ++V + N E +C RI +
Sbjct: 177 LDVLNAREVRKILKQASQEGLTILVSS-HNMLEVEFLCDRIAL 218
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A
{Mus musculus}
Length = 168
Score = 27.4 bits (62), Expect = 3.4
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I+ + +GI V +I+ + ++
Sbjct: 45 ISLLKKSGIEVRLISERACSKQTLSALKLDC 75
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT
barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB:
3a4w_A* 3a4x_A* 3afb_A
Length = 311
Score = 27.7 bits (61), Expect = 3.5
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 124 VPWGMKPEDMNLADSTKFASY-EVNLTFVGVVGMLDPPR-------KEVFDSIARCRAAG 175
+ + L + K L F+ + + P ++ D + R G
Sbjct: 18 MSLSVHK---PLVEYAKLTGTKYFTLAFILYSSVYNGPAWAGSIPLEKFVDEVRELREIG 74
Query: 176 IRVIVITG 183
VI+ G
Sbjct: 75 GEVIIAFG 82
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 27.9 bits (63), Expect = 3.6
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
+EV D++ R + ++ITG A
Sbjct: 32 MQEVTDALNRAEEDDSVGAVMITGAEDA 59
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 27.6 bits (62), Expect = 3.7
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 163 EVFDSIARCRAAGIRVIVITGDNKA 187
E + +C + + V+V+ G +
Sbjct: 38 ECLQVLNQCETSTVTVVVLEGLPEV 62
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester
phosphodiesterase, T. tengcongensis; 1.91A
{Thermoanaerobacter tengcongensis}
Length = 252
Score = 27.6 bits (62), Expect = 3.8
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 109 ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSI 168
+++ + P K+ + E ++A + S + P + +
Sbjct: 158 RDVKKMAPHLKIGLLY-QCGLVEPWHMALRMEAYSLHPFYFN------IIP------ELV 204
Query: 169 ARCRAAGIRVIVITGDNKATAEAICRRIGV 198
C+ G+++ T D K E + GV
Sbjct: 205 EGCKKNGVKLFPWTVDRKEDMER-MIKAGV 233
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 27.6 bits (62), Expect = 3.9
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 162 KEVFDSIARCRA-AGIRVIVITGDNKA 187
+E+ D + V+V+TG +A
Sbjct: 39 REMIDVLETLEQDPAAGVLVLTGAGEA 65
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 27.6 bits (62), Expect = 3.9
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
E+ + R + VIV+ + K
Sbjct: 49 LDELDAAWTRAAEDNDVSVIVLRANGKH 76
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 27.5 bits (61), Expect = 3.9
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 164 VFDSIARCRAAGIRVIVITGDNKATAEAICRRIG--------VFTEEEDTTGK 208
V + IA R GI++ TG + + + + + T ++ G+
Sbjct: 108 VKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAGR 160
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022
hydrolase, lipopolysaccharide biosynthesis, magnesium,
STRU genomics; 1.95A {Yersinia pestis}
Length = 211
Score = 27.6 bits (62), Expect = 4.0
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I + I V +ITG E +G+
Sbjct: 85 IRCLITSDIDVAIITGRRAKLLEDRANTLGI 115
>3mmz_A Putative HAD family hydrolase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.84A {Streptomyces avermitilis}
Length = 176
Score = 27.1 bits (61), Expect = 4.0
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
IA R +G+ +++++ + A R++ +
Sbjct: 48 IAALRKSGLTMLILSTEQNPVVAARARKLKI 78
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 27.9 bits (63), Expect = 4.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 172 RAAGIRVIVI-TGDNKATAEAICRRIG-----VFTEEEDTTGK 208
+A G RV+ I G+ K E + R IG FT+E+D G
Sbjct: 191 KAMGYRVLGIDGGEGK---EELFRSIGGEVFIDFTKEKDIVGA 230
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 27.5 bits (62), Expect = 4.1
Identities = 3/28 (10%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
++ + V+++TG +
Sbjct: 35 YDATAQALLDAADDPQVAVVLLTGSGRG 62
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium
tumefaciens STR. C58, structural genomics; 2.50A
{Agrobacterium tumefaciens str} SCOP: c.1.18.3
Length = 248
Score = 27.6 bits (62), Expect = 4.1
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I R AG+ ++V G + V
Sbjct: 187 IEASRKAGLEIMVYYGGDDMAVHREIATSDV 217
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 27.6 bits (62), Expect = 4.2
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 153 VVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSG 212
+ + R E + + RA G V++ +A+ + + G + G
Sbjct: 340 CILFSNERRFEAIELARKKRANGEAVVLQDLAGVTDVDAMSSN---YQDVIYCIGTAGRG 396
Query: 213 RE 214
E
Sbjct: 397 GE 398
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 27.7 bits (62), Expect = 4.4
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 161 RKEVFDSIARCRAAGIRVIVITGDNKA 187
KE+ +++ A ++++ +
Sbjct: 53 IKEIVNALNSAAADDSKLVLFSAAGSV 79
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 27.5 bits (62), Expect = 4.5
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 162 KEVFDSIARCRAAGIRVIVITG 183
++ ++I R + GI ++++TG
Sbjct: 23 EKALEAIRRAESLGIPIMLVTG 44
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami
amino-6-(5-phosphoribosylamino)uracil...;
oxidoreductase, structural genomics; HET: NDP; 1.80A
{Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Length = 360
Score = 27.5 bits (62), Expect = 4.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 153 VVGMLDP-P---RKEVFDSIARCRAAGIRVIV 180
V+G DP P + + R GI VI
Sbjct: 111 VIGTRDPNPVSGN-----GVEKFRNHGIEVIE 137
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI,
divalent metal, HAD superfamily, KDO 8-P, hydrolase;
1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A
3hyc_A 3i6b_A*
Length = 188
Score = 27.1 bits (61), Expect = 4.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I + I V +ITG E C +G+
Sbjct: 62 IRCALTSDIEVAIITGRKAKLVEDRCATLGI 92
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein
structure initiative, NYSG phosphatase; 1.80A
{Pseudomonas syringae PV} PDB: 3nrj_A
Length = 189
Score = 27.2 bits (61), Expect = 4.8
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I A+G+ +I+G A E + +G+
Sbjct: 55 IKMLIASGVTTAIISGRKTAIVERRAKSLGI 85
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics,
PSI-2; 1.80A {Legionella pneumophila}
Length = 191
Score = 27.2 bits (61), Expect = 4.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
+ AAGI+V +IT A + ++G+
Sbjct: 55 LKLLMAAGIQVAIITTAQNAVVDHRMEQLGI 85
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 27.5 bits (62), Expect = 5.2
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 159 PPRKEVFDS-IARCRAAGIRVIVITGD 184
+E+ + + G +V+T D
Sbjct: 132 VIHREIAQGMVLKALHTGYTTLVLTTD 158
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 27.2 bits (61), Expect = 5.2
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
+ AGI + +ITG E + +G+
Sbjct: 61 VKALMNAGIEIAIITGRRSQIVENRMKALGI 91
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 27.3 bits (61), Expect = 5.2
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 167 SIARC-RAAGIRVIVITGDNKATAEAICRRIGVFTEEEDT 205
S+ R AA V A+ V + E T
Sbjct: 22 SLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEAT 61
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 27.2 bits (61), Expect = 5.5
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 109 ENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSI 168
+ ++L P+ V + + A ++ +F D +
Sbjct: 157 VSAKALWPEIARGYNV-SAIPSAWQERLEHLDCAGLHIHQSF------FDV------QQV 203
Query: 169 ARCRAAGIRVIVITGDNKATAEAICRRIGV 198
+ +AAG +V+ T ++++ A G+
Sbjct: 204 SDIKAAGYKVLAFTINDESLALK-LYNQGL 232
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid
9-phosphate phosphohydrolase, nucleotidyltransferase;
HET: PEG PG4 EDO PGE; 1.10A {Bacteroides
thetaiotaomicron} PDB: 3e84_A 3e81_A*
Length = 164
Score = 26.7 bits (60), Expect = 5.7
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I GI V ++TG+ ++ V
Sbjct: 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKV 70
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 26.8 bits (60), Expect = 6.5
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 156 MLDPPRK-EVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEE 202
+ + E R + TG + +A + +++G+ +
Sbjct: 14 WVGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEPD 61
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 27.1 bits (61), Expect = 6.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 168 IARCRAAGIRVIVITGD 184
+ R AG + I +T D
Sbjct: 142 VRRAERAGFKAIALTVD 158
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 27.1 bits (61), Expect = 6.5
Identities = 4/28 (14%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
+ ++ +RV+V+ G
Sbjct: 34 YLWIAKALDEADQNKDVRVVVLRGAEHD 61
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 26.8 bits (60), Expect = 6.6
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199
P V +++A C+ G+ V + + E + +
Sbjct: 94 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR 134
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM
barrel), structural genomics, PSI-2, structure
initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens
str}
Length = 344
Score = 26.9 bits (60), Expect = 6.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 161 RKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
R E + R AGI VIV TG TA A+
Sbjct: 81 RMEG---VERLVKAGIPVIVGTGAV-NTASAV 108
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 26.7 bits (60), Expect = 6.9
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
EV ++ + A +R +VITG +A
Sbjct: 32 NAEVTKALKQAGADPNVRCVVITGAGRA 59
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 27.1 bits (61), Expect = 7.0
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 168 IARCRAAGIRVIVITGD 184
+ ++ G I++T D
Sbjct: 152 LDEAKSDGATAIILTAD 168
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 26.9 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
+ +I R A GIRVIV+TG +
Sbjct: 59 AAGFYAAIDRAEADPGIRVIVLTGRGRG 86
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 26.8 bits (60), Expect = 7.2
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
++ ++ +R +++TG +A
Sbjct: 29 LDALYAALKEGEEDREVRALLLTGAGRA 56
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.60A {Silicibacter
pomeroyi}
Length = 313
Score = 27.0 bits (60), Expect = 7.3
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
+A G+ V+ T + GV
Sbjct: 261 VAEAHDLGLIVLTWTVNEPEDIRR-MATTGV 290
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 27.0 bits (60), Expect = 7.3
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 150 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIG 197
F+ +G + P K ++ A A G R+++ + I RR G
Sbjct: 164 FLLFMGRVSP-HKGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRYG 211
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 26.8 bits (60), Expect = 7.8
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 168 IARCRAAGIRVIVITGD 184
+ + G + I +T D
Sbjct: 166 VRQAEKMGYKAIFVTVD 182
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 26.8 bits (60), Expect = 8.0
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 160 PRKEVFDSIARCRAAGIRVIVI-------TGDNKATAE----AICRRIGV 198
P++ V D++ +C G++ +VI TG+ E I + G+
Sbjct: 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM 122
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 26.9 bits (60), Expect = 8.2
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 168 IARCRAAGIRVIVITGD------------NKATAEAICRRIGVFTEEEDTTGKSYSGREF 215
+ G++ + +T D K + + T E++ G S + +F
Sbjct: 266 VKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 325
Query: 216 DDLPLS 221
D L+
Sbjct: 326 IDPSLT 331
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 26.8 bits (60), Expect = 8.3
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
R F +++ + + V+++TG +
Sbjct: 38 RSTFFRALSDAQNDDDVDVVIVTGADPV 65
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 26.4 bits (59), Expect = 8.5
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 164 VFDSIARCRAAGIRVIVITGDNKA-TAEAICRRIG-------VFTEEEDTTGK 208
+ +A +GI+ + T +K A I + +G + T + K
Sbjct: 90 AREVLAWADESGIQQFIYT--HKGNNAFTILKDLGVESYFTEILTSQSGFVRK 140
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 26.4 bits (59), Expect = 9.0
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 161 RKEVFDSIARCRA-AGIRVIVITGDNKA 187
+++ + R +RVIV+TG A
Sbjct: 36 GRQLGAAYQRLDDDPAVRVIVLTGAPPA 63
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO
protein structure initiative, southeast collaboratory
for S genomics; 2.40A {Aquifex aeolicus}
Length = 162
Score = 25.9 bits (58), Expect = 9.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I + GI + VI+G + A + +GV
Sbjct: 45 IKLLQKMGITLAVISGRDSAPLITRLKELGV 75
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 26.4 bits (59), Expect = 9.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 164 VFDSIARCRAAGIRVIVITGDNKAT--AEAICRRIG 197
V +++ +A G + V+T NK T + I G
Sbjct: 119 VKETLEALKAQGYILAVVT--NKPTKHVQPILTAFG 152
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 26.4 bits (59), Expect = 9.5
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 166 DSIARCRAAGIRVIVITGDNKA--TAEAIC---RRIGVFTEEED 204
+++ R RA + V +T N T + + +++ E++
Sbjct: 30 EALKRLRATSVMVRFVT--NTTKETKKDLLERLKKLEFEISEDE 71
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 26.7 bits (60), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 168 IARCRAAGIRVIVITGD 184
+ R A G + +VIT D
Sbjct: 141 VQRAEALGFKALVITID 157
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 26.8 bits (60), Expect = 9.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDN 185
V + V D+ + GIR +VI +N
Sbjct: 603 SVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDEN 636
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A
{Escherichia coli}
Length = 287
Score = 26.6 bits (59), Expect = 9.7
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 150 FVGVVGMLDPPRKEVFDSIAR----CRAAGIRVI 179
FV G P ++V +IA C+ I V
Sbjct: 44 FVSFWGENCPMMEQVIANIAALRDYCKQHNIPVY 77
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 26.3 bits (58), Expect = 9.8
Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 10/81 (12%)
Query: 159 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG----------VFTEEEDTTGK 208
R+ + +A I VI+G + I F +
Sbjct: 77 KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDW 136
Query: 209 SYSGREFDDLPLSEQKAAVAR 229
+S + K +V
Sbjct: 137 PHSCKGTCSNQCGCCKPSVIH 157
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 26.4 bits (59), Expect = 10.0
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 164 VFDSIARCRAAGIRVIVITGDNKAT--AEAICRRIG-------VFTEEEDTTGK 208
+ ++ + G ++V T +K T ++ I + D
Sbjct: 91 IEALLSSLKDYGFHLVVAT--SKPTVFSKQILEHFKLAFYFDAIVGSSLDGKLS 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.372
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,013,198
Number of extensions: 240962
Number of successful extensions: 1106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 150
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)