RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy885
(270 letters)
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 97.5 bits (242), Expect = 9e-26
Identities = 70/111 (63%), Positives = 84/111 (75%)
Query: 147 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTT 206
+ T LDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRIG+F E E+
Sbjct: 8 DKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 67
Query: 207 GKSYSGREFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAM 257
++Y+GREFDDLPL+EQ+ A RA F+RVEP+HKSKIVE+LQ +EI+AM
Sbjct: 68 DRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAM 118
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 81.1 bits (199), Expect = 6e-19
Identities = 60/137 (43%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 25 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVL 84
+ E+A A + KKEFTLEFSRDRKSMS YC+P KSS+ + G K+FVKGAPEGV+
Sbjct: 104 KVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSR-AAVGNKMFVKGAPEGVI 162
Query: 85 ERCTHARIGSQKVSLKDFSANTRFENLRSLEPKSK-----VSAIVPWGMKPEDMNLADST 139
+RC + R+G+ +V + ++ A K E+M L DS+
Sbjct: 163 DRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSS 222
Query: 140 KFASYEVNLTFVGVVGM 156
+F YE +LTFVGVVGM
Sbjct: 223 RFMEYETDLTFVGVVGM 239
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 71.8 bits (175), Expect = 1e-15
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 27 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLER 86
E + + + + K + F+ K S + L +KGAPE +L+R
Sbjct: 77 ELSCGSVRKMRDRNPKVAEISFNSTNKYQLSIH----EREDNPQSHVLVMKGAPERILDR 132
Query: 87 CTHARIGSQKVSLKDFSANTRFENLRSLEPKS-KVSAI----VPWGMKPEDMNLADSTKF 141
C+ + +++ L + L +V +P G P D+ +
Sbjct: 133 CSSILVQGKEIPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKFPRGFKF-DTDEL 191
Query: 142 ASYEVNLTFVGVVGMLDPPR 161
L FVG++ M+D
Sbjct: 192 NFPTEKLCFVGLMSMIDHHH 211
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 59.8 bits (144), Expect = 5e-11
Identities = 20/234 (8%), Positives = 48/234 (20%), Gaps = 37/234 (15%)
Query: 33 RQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI 92
Q++ T F L + + + + + A +
Sbjct: 115 LQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIY------AALEEFATTELHVSDATLFS 168
Query: 93 GSQKVSLKDFSANTRFENLRSLEPKSKVSAIVPWGMKPEDMNLADSTKFASYEVNLTFVG 152
+ + E + W + + + G
Sbjct: 169 LKGAL--WTLAQ----EVYQE------------WYLGSKLYEDVEKKI----ARTTFKTG 206
Query: 153 VVGMLDP--PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV---FTEEEDTTG 207
+ P EV + + AG + + TG +G+ F + T
Sbjct: 207 YIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATA 266
Query: 208 KSYSGREFDDLPLSEQK----AAVARARLFSRVEPAHKSKIVEFLQGMNEISAM 257
E + A + + + + +
Sbjct: 267 SDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI 320
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 57.0 bits (137), Expect = 6e-11
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
+ T G D ++ ++ + GI+V +ITGDN +AEAI R +
Sbjct: 8 FDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 58
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 37.7 bits (86), Expect = 7e-04
Identities = 17/86 (19%), Positives = 34/86 (39%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLS 221
++ ++I R + GI ++++TG+ AEA IG G + S ++ S
Sbjct: 22 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISYKKKRIFLAS 81
Query: 222 EQKAAVARARLFSRVEPAHKSKIVEF 247
+ + + R A S +
Sbjct: 82 MDEEWILWNEIRKRFPNARTSYTMPD 107
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 35.3 bits (80), Expect = 0.004
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
+ +SI G+ V +++G+ A+ +G+
Sbjct: 23 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGI 59
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 30.8 bits (68), Expect = 0.13
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 163 EVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 199
E R + TG + +A + +++G+
Sbjct: 22 EHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLM 58
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 30.7 bits (68), Expect = 0.13
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197
V ++IA RA G+ V++ TG A + +
Sbjct: 24 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELH 59
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 30.7 bits (68), Expect = 0.16
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197
E D+I G V + TG +K +
Sbjct: 31 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEEN 66
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 30.7 bits (68), Expect = 0.17
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 149 TFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197
TF+ + PR + GI+ +V +G+ + +
Sbjct: 12 TFLNDAKTYNQPR--FMAQYQELKKRGIKFVVASGNQYYQLISFFPELK 58
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 29.9 bits (66), Expect = 0.26
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 146 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
VNLT R +V +A AG+ ++ITG N ++
Sbjct: 6 VNLTS----SQFAKDRDDV---VACAFDAGVNGLLITGTNLRESQQA 45
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 29.9 bits (66), Expect = 0.26
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 198
E +++ + + GI V+V TG +I +G+
Sbjct: 21 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 57
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 29.3 bits (64), Expect = 0.47
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 160 PRKEVFDS------IARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSGR 213
P + IA A G++V++ T + R + + + + + GR
Sbjct: 43 PEPGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEILPVDREGRRRRFGGR 102
Query: 214 EFDDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISAMDS 259
S AR + E + V Q NE D+
Sbjct: 103 RHYC-FSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDT 147
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632
{Xanthomonas campestris pv. campestris [TaxId: 340]}
Length = 178
Score = 28.4 bits (63), Expect = 0.58
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 2/101 (1%)
Query: 158 DPPRKEVFDSIARC-RAAGIRVIVITGDNKATAEAICR-RIGVFTEEEDTTGKSYSGREF 215
P + DS+ R +G V ++ + F + + E
Sbjct: 58 QPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIEL 117
Query: 216 DDLPLSEQKAAVARARLFSRVEPAHKSKIVEFLQGMNEISA 256
+ L V +R F+ P+ + +
Sbjct: 118 NAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALT 158
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase
UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Length = 240
Score = 28.8 bits (63), Expect = 0.58
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 168 IARCRAAGIRVIVITGDNKATAEAICRRIGV 198
I R AG+ ++V G + V
Sbjct: 187 IEASRKAGLEIMVYYGGDDMAVHREIATSDV 217
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 28.8 bits (63), Expect = 0.69
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 158 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
+ K+V D +A+ A ++ + + +
Sbjct: 16 ESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHM 50
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 28.7 bits (63), Expect = 0.71
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
+++ A G+++ + TG KA +
Sbjct: 22 SSTIEALEAAHAKGLKIFIATGRPKAIINNL 52
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 28.1 bits (61), Expect = 1.1
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 197
I + G +I + +A E + +
Sbjct: 20 DPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELE 55
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 342
Score = 27.9 bits (60), Expect = 1.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 213 REFDDLPLSEQKAAVAR---ARLFSRVEPAHKSK 243
L E+K + R++ R++ A K+K
Sbjct: 308 EASTILT-PEEKQQIYEGNARRVYPRLDAALKAK 340
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 27.6 bits (60), Expect = 1.5
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
D R V I+ I +V G N ++
Sbjct: 17 FDDDRNAV---ISSFEENNIEFVVNVGVNLEDSKKS 49
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.0 bits (58), Expect = 2.3
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 162 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRI 196
+ + R R A + VI+ + A + + +
Sbjct: 24 QPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTL 58
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.6 bits (57), Expect = 2.8
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 152 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR 195
GV+ + + + G+ ++++T T + + R
Sbjct: 12 GVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANR 55
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 26.7 bits (58), Expect = 2.9
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 174 AGIRVIVITGDN----KATAEAICRRIG 197
+GI V ++TG N A +CR
Sbjct: 1 SGIHVALVTGGNKGIGLAIVRDLCRLFS 28
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 26.6 bits (57), Expect = 3.1
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 157 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 192
P + S+ R AG+ I++ +
Sbjct: 14 FPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARV 49
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), regulatory C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 74
Score = 25.0 bits (55), Expect = 3.5
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 116 PKSK---VSAIVPWGMK-PEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARC 171
P+S +AI P G++ P LAD A + ++ PR++V +
Sbjct: 10 PRSALKKATAITP-GLESPTIAPLADPDWVA----------IRALV--PRRDVNGIMDEL 56
Query: 172 RAAGIRVIVIT 182
A G + I+ +
Sbjct: 57 AAIGAKAILAS 67
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 26.4 bits (57), Expect = 4.0
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 149 TFVGVVG---MLDPPRKEVF-DSIARCRAAGIRVIVITG 183
V G M D + F +A R GI +V+ G
Sbjct: 27 VVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHG 65
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 313
Score = 26.4 bits (57), Expect = 4.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 162 KEVFDSIARCRAAGIRVIVITG 183
++ IA A G V++ G
Sbjct: 30 RKTARQIAEIIARGYEVVITHG 51
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 26.0 bits (57), Expect = 5.7
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 187 ATAEAICRRIGVFTEEEDTTGKSYSGREFDDLPLSEQKAAVARAR 231
+ EA+ + E D G + + +A + +
Sbjct: 323 SVEEAVVN--AMIAAE-DMGGTPFDRLLVQAIDHERLRAVLRQYG 364
>d1jbsa_ d.1.1.3 (A:) Restrictocin {Fungus (Aspergillus
restrictus) [TaxId: 5064]}
Length = 149
Score = 24.7 bits (53), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 46 LEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKG 78
L +S+ + +S+ PL K GSS P F G
Sbjct: 22 LLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNG 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.372
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 954,124
Number of extensions: 43123
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 33
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)