BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8850
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 576 bits (1484), Expect = e-165, Method: Compositional matrix adjust.
Identities = 262/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 7 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 127 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 187 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 247 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
ID+TI+L++ + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 366 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 262/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 206 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 324
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 325 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
ID+TI+L++ + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 385 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 257/382 (67%), Gaps = 7/382 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
DY++ P+D R+++ M+PY+ FGNP+S H YG+ A +A+++AR +VA+L+
Sbjct: 4 FDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGT 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
+++TSGATE+NNLAI G A ++GKHI+ EH SV++ + L+ GF V Y+
Sbjct: 63 VVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + +S +++K+ DTILVSV NNEIG IQP+ EI E+ K + H DA +VG+I
Sbjct: 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQI 181
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++++ D+++ S++ IYGPKG+GAL+IR+ +++ I GGG E GLRSG+
Sbjct: 182 EVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPS 239
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG G+A + +E +EE +R+ L+ R+ + +++ IEE Y+NG R+P+N+N+ F++
Sbjct: 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSY 298
Query: 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGES+++++ I S+GSAC+S +L+PS+VL A G E AH ++ T+GR+ T+++
Sbjct: 299 IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358
Query: 359 IDFTIKLLKMKVKKLRELSPLW 380
+D +++L +++LR +SPL+
Sbjct: 359 VDRLLEVLPGVIERLRSMSPLY 380
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 234/381 (61%), Gaps = 14/381 (3%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATT +D RV D ++ ++ +FGN SR H YG A++ +E+AR +A + A+P E
Sbjct: 24 LDAAATTRVDQRVADIVLHWMTAEFGNAGSR-HEYGIRAKRGVERAREYLASTVSAEPDE 82
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
+I+TSGATESNN+A+ G A + ++ G+ HIIT EHK+VL+ + L GF V +L P
Sbjct: 83 LIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG 142
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
+G I++ + E++ DT+LVS+M VNNE GVIQP+ E+ + R+ H DAAQ GK
Sbjct: 143 PSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK 202
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR-----NPRTRIEAQIHGGGHEYGLRSG 234
+ ++ +D++S S HKI PKG+GAL RR + R +E + GGG E LR G
Sbjct: 203 VPGDLTT-PIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPG 261
Query: 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 294
TL I+G+ EA ++ E + L+ RL GL + +NGD ++ +PH L
Sbjct: 262 TLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLAST--SFQVNGDQDHVVPHIL 319
Query: 295 NISFNFIEGESLLMAIKD-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 353
N+SF ++ E+ L+ +KD +AV++GSA TSAS PS+VLRA+G +E A S+RF+ +
Sbjct: 320 NLSFEDVDAEAFLVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFS---W 376
Query: 354 TTEKEIDFTIKLLKMKVKKLR 374
T + D ++ L V KL+
Sbjct: 377 TPGQATDLDVEELARGVAKLK 397
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 258 bits (658), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 223/368 (60%), Gaps = 9/368 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++MI + R ++GNP S H G A +EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+M NNE+G IQP+ ++ + + K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K + L+ +L +GLM I +++ +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEIS--LPNTLSVSF 299
Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L L++ I VS+ SACTS +VL A+G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIK 364
+E+D+ +K
Sbjct: 360 EEVDYFLK 367
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 222/386 (57%), Gaps = 16/386 (4%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++ I + R ++GNP S H G A EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEXIVFYREKYGNPNS-AHGXGIEANLHXEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++ + L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+ NNE+G IQP+ ++ + + K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K L+ +L +GL I +++ +P+ L++SF
Sbjct: 242 PGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNLGAHIITPLEIS--LPNTLSVSF 299
Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L L++ I VS+ SACTS +VL A G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAXGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLKMKVKKLRELSPLWDM 382
+E+D+ + KK+ E+ D+
Sbjct: 360 EEVDYFL-------KKIEEILSFLDL 378
>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9X|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9Y|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Y|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Z|A Chain A, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
pdb|3A9Z|B Chain B, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
Length = 432
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 213/412 (51%), Gaps = 44/412 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDY+ATTP++P V+ + ++ +GNP+S +++ G A+ I AR +A++I P++
Sbjct: 22 MDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQD 80
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-----------------KHIITVQTEHKSVLDSI 103
II+TSG TESNNL I + ++ H IT EH S+ +
Sbjct: 81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL 140
Query: 104 RKL-ENDGFRVTYLK-PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
L E+ VT++ K NG + + + + T LV++ML NNE GVI PI EI
Sbjct: 141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRR 200
Query: 162 CRS----------KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
++ V+ H DAAQA+GK +++++ VD ++ HK YGP+ IGALY+R
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259
Query: 212 RNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRIL--FLQ 266
+ T + + GGG E R GT T I G+G+A L E E R + +L+
Sbjct: 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319
Query: 267 KRLYNGLMESIEEIYINGDMNN--RIPHNLNISF--NFIEGESLLMAIKDIAVSSGSACT 322
+RL E + I++N R+P+ N S + + G +L + + S G++C
Sbjct: 320 ERLE---AEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCH 376
Query: 323 SASLE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
S + PS VL + G ++A +++R ++GR TT E+D ++ LK V +L
Sbjct: 377 SDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428
>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase
pdb|3GZC|B Chain B, Structure Of Human Selenocysteine Lyase
pdb|3GZD|C Chain C, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 207/414 (50%), Gaps = 43/414 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDY+ATTP++P V+ M + +GNP+S + G A+ I AR +A++I P++
Sbjct: 29 MDYNATTPLEPEVIQAMTKAMWEAWGNPSS-PYSAGRKAKDIINAARESLAKMIGGKPQD 87
Query: 61 IIWTSGATESNNLAIKGAA-HFY----------------KKRGKHIITVQTEHKSVLDSI 103
II+TSG TESNNL I HF+ K H IT EH S+ +
Sbjct: 88 IIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPL 147
Query: 104 RKLENDGFRVTYLKP--KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
L + P K +G + + + T LV++ML NNE G++ P+ EI +
Sbjct: 148 EHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQR 207
Query: 162 CRS----------KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
++ ++ H DAAQA+GK +++++ VD ++ HK YGP+ IGALYIR
Sbjct: 208 IKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIR 266
Query: 212 R-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRIL--FLQ 266
T + + GGG E R GT T I G+G+A L E E R + +L+
Sbjct: 267 GLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLE 326
Query: 267 KRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--IEGESLLMAIKDIAVSSGSACT 322
+RL + + I++N R+P+ N S ++G +L + + S G+AC
Sbjct: 327 ERLEAEFGQ--KRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAACH 384
Query: 323 SA-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
S +PS VL + G ++A +++R ++GR TT E+D ++ LK V +L +
Sbjct: 385 SDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLED 438
>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|B Chain B, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|D Chain D, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 206/414 (49%), Gaps = 43/414 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDY+ATTP++P V+ M + +GNP+S + G A+ I AR +A++I P++
Sbjct: 29 MDYNATTPLEPEVIQAMTKAMWEAWGNPSS-PYSAGRKAKDIINAARESLAKMIGGKPQD 87
Query: 61 IIWTSGATESNNLAIKGAA-HFY----------------KKRGKHIITVQTEHKSVLDSI 103
II+TSG TESNNL I HF+ K H IT EH S+ +
Sbjct: 88 IIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPL 147
Query: 104 RKLENDGFRVTYLKP--KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
L + P K +G + + + T LV++ML NNE G++ P+ EI +
Sbjct: 148 EHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQR 207
Query: 162 CRS----------KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
++ ++ H DAAQA+GK +++++ VD ++ HK YGP+ IGALYIR
Sbjct: 208 IKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIR 266
Query: 212 R-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRIL--FLQ 266
T + + GGG E R GT T I G+G+A L E E R + +L+
Sbjct: 267 GLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLE 326
Query: 267 KRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--IEGESLLMAIKDIAVSSGSACT 322
+RL + + I++N R+P+ N S ++G +L + + S G+A
Sbjct: 327 ERLEAEFGQ--KRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAAXH 384
Query: 323 SA-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
S +PS VL + G ++A +++R ++GR TT E+D ++ LK V +L +
Sbjct: 385 SDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLED 438
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 185/373 (49%), Gaps = 24/373 (6%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL--IYADP 58
+D++ATT IDPRV + +I + + NP+S H G A+ IE R ++A I
Sbjct: 12 LDHNATTFIDPRVKEFIISLMDKEL-NPSSA-HSSGRFAKNLIETVRAQIATALGITLSS 69
Query: 59 RE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 116
RE I +TS TE NNL +K +FY I EH S+ + I N + +
Sbjct: 70 REYDITFTSSGTEGNNLIMK---NFYDG---DIFISAIEHLSIYNHINYAPN----IKVI 119
Query: 117 KPKNNGLITLSQLEEKICSDTI---LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173
GL+ L LEE + LVS+++ NNE GV+Q I EIG++ + FH D
Sbjct: 120 SVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFHSDL 179
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233
Q G+I INI+ +D + S H I G +G AL N +I I GGG E +RS
Sbjct: 180 VQGFGRIPINIKALGLDFATISGHXIGGGQGGAALISSSN--FQITPMIIGGGQEKSVRS 237
Query: 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN 293
GT I G G A L + E +I LQ+ L L + + I + R+P+
Sbjct: 238 GTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKL-KKYPNVNIVSNNVARLPNT 296
Query: 294 LNISFNFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351
I+ + ++ L+ + +I VSSGSAC+S + S+VL +G +E A SSIR ++
Sbjct: 297 TLITIPNTDAQAKLIGFDLHNICVSSGSACSSGKISKSHVLTNMGVGEEEAKSSIRISLS 356
Query: 352 RFTTEKEIDFTIK 364
T ++I+ I+
Sbjct: 357 HTNTVRDIEAFIE 369
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 163/393 (41%), Gaps = 35/393 (8%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +AT+ V++K++ Y N H A A E RN+VA+ I A PR
Sbjct: 32 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR 91
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKP 118
EI++T ATE+ NL K G IIT EH S L + + G + +++
Sbjct: 92 EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL 151
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
L + + T LV+V+ ++N +G + P EI +L G DA Q+
Sbjct: 152 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 211
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
+++Q D + S HK+ P GIG LY + + GGG
Sbjct: 212 HYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPP-FFGGGEMIAEVFFDHFT 270
Query: 228 ----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282
+ +GT A + + +G A L + M+ + L L+ GL + I ++ +
Sbjct: 271 TGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRL 329
Query: 283 NGDMNNRIPHNLNISFNFI---EGESLLMAIKD-IAVSSGSACTSASLEPSYVLRALGCN 338
G SFN + M +D IA+ SG CT +P + L
Sbjct: 330 YGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHRLFD---- 381
Query: 339 DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371
A S R ++ + T++EID ++ L+ ++
Sbjct: 382 ---ASGSARASLYFYNTKEEIDLFLQSLQATIR 411
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 6/215 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +A+ +V+D + R + + H A + +E R + I A
Sbjct: 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATEKMENVRKRASLFINARSAE 86
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
E+++ G TE NL + + G +II Q EH + + + L RV L
Sbjct: 87 ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 146
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
P +G + L L + T L+++ V+N +G P+ E+ L G D AQA
Sbjct: 147 NP--DGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
V +++Q D FS HK+YGP GIG LY++
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVK 239
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 153/390 (39%), Gaps = 40/390 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +A+ +V+D + R + H A + +E R + I A
Sbjct: 29 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 88
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
E+++ G TE NL + + G +II Q EH + + + L RV L
Sbjct: 89 ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 148
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
P +G + L L T L+++ V+N +G P+ E+ L G D AQA
Sbjct: 149 NP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 206
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---------- 226
V +++Q D FS HK+YGP GIG LY++ + GG
Sbjct: 207 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 266
Query: 227 -----HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL--MESIEE 279
+ +GT T I+G+G A + + Q ++ L +ES+ +
Sbjct: 267 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAE--YEQNLMHYALSQLESVPD 324
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
+ + G N I NL + G + IAV +G C + L Y + A+ C
Sbjct: 325 LTLYGPQNRLGVIAFNLGKHHAYDVGS--FLDNYGIAVRTGHHC-AMPLMAYYNVPAM-C 380
Query: 338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
R ++ + T +E+D + L+
Sbjct: 381 ---------RASLAMYNTHEEVDRLVTGLQ 401
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 153/390 (39%), Gaps = 40/390 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +A+ +V+D + R + H A + +E R + I A
Sbjct: 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 86
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
E+++ G TE NL + + G +II Q EH + + + L RV L
Sbjct: 87 ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 146
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
P +G + L L T L+++ V+N +G P+ E+ L G D AQA
Sbjct: 147 NP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---------- 226
V +++Q D FS HK+YGP GIG LY++ + GG
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 264
Query: 227 -----HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL--MESIEE 279
+ +GT T I+G+G A + + Q ++ L +ES+ +
Sbjct: 265 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAE--YEQNLMHYALSQLESVPD 322
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
+ + G N I NL + G + IAV +G C + L Y + A+ C
Sbjct: 323 LTLYGPQNRLGVIAFNLGKHHAYDVGS--FLDNYGIAVRTGHHC-AMPLMAYYNVPAM-C 378
Query: 338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
R ++ + T +E+D + L+
Sbjct: 379 ---------RASLAMYNTHEEVDRLVTGLQ 399
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 6/215 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +A+ +V+D + R + H A + +E R + I A
Sbjct: 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 86
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
E+++ G TE NL + + G +II Q EH + + + L RV L
Sbjct: 87 ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 146
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
P +G + L L T L+++ V+N +G P+ E+ L G D AQA
Sbjct: 147 NP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
V +++Q D FS HK+YGP GIG LY++
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVK 239
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 151/345 (43%), Gaps = 32/345 (9%)
Query: 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR-GKHIITVQTEHKS-VL 100
++ AR VA L+ ADP ++ GA + L++ A + G +I + + ++ +
Sbjct: 71 LDAAREAVADLVNADPGGVVL--GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIA 128
Query: 101 DSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159
+R G +V + + G + Q E I T LV+V + +G + + +
Sbjct: 129 PWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMT 188
Query: 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR-------- 211
+L G + D + A ++I+ D+++ +AH GP IGA+ R
Sbjct: 189 KLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSF 247
Query: 212 ----RNPRTRIEAQIHGGGHEYGLRSGTLATHQ-IVGMGEAFRLARIE-MKEELKRILFL 265
NP A++ G H++GL +G +A+ + + + E+ R +R E + ++
Sbjct: 248 GSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAY 307
Query: 266 QKRLYNGLMESIEE---IYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACT 322
R+++ LM S+ + + G +IP ++ + + + + ++ + D +
Sbjct: 308 LNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKVPADRVVQRLAD------NGIL 360
Query: 323 SASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
+ + S VL LG ND ++ + ++T E+D ++ L
Sbjct: 361 AIANTGSRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALA 403
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 29 ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
A+ HI ++ I + R +A+ DP I T T ++ + G +G
Sbjct: 52 AANQHI-----QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG---LDWHQGDE 103
Query: 89 IITVQTEHKSVLDSIRKLENDGFRVTY--------LKPKNNGLITLSQLEEKICSDTILV 140
I+ EH ++ ++ + F +TY L + + + L K + +++
Sbjct: 104 ILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHLGPK--TRLVIL 160
Query: 141 SVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSA 196
S +L N G + P+ EI +CR + V D AQ+ G + ++ +VD +F+
Sbjct: 161 SHLLWNT--GQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG 218
Query: 197 HKIY-GPKGIGALYI 210
HK + GP G+G LYI
Sbjct: 219 HKWFAGPAGVGGLYI 233
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 29 ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
A+ HI ++ I + R +A+ DP I T T ++ + G +G
Sbjct: 48 AANQHI-----QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG---LDWHQGDE 99
Query: 89 IITVQTEHKSVLDSIRKLENDGFRVTY--------LKPKNNGLITLSQLEEKICSDTILV 140
I+ EH ++ ++ + F +TY L + + + L K + +++
Sbjct: 100 ILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHLGPK--TRLVIL 156
Query: 141 SVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSA 196
S +L N G + P+ EI +CR + V D AQ+ G + ++ +VD +F+
Sbjct: 157 SHLLWNT--GQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG 214
Query: 197 HKIY-GPKGIGALYI 210
H + GP G+G LYI
Sbjct: 215 HAWFAGPAGVGGLYI 229
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 168
G RV + K TL ++EE + +L+ ++ + GV+QP+ GELC +
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCL 180
Query: 169 FHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGI 205
D+ ++G + I + +D+M S+ K+ P GI
Sbjct: 181 LLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGI 218
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 150 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-- 206
G++QP+ +G++C + DA ++ + + +++D + A K+ G P GI
Sbjct: 157 GLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPI 216
Query: 207 -----ALYIRRNPRTR---------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAF-RLA 251
AL + RN RT+ + G E T+A++ I + EA ++A
Sbjct: 217 SISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA 276
Query: 252 RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291
++ ++KR + + LY GL + +I++ D +R+P
Sbjct: 277 EEGLENQIKRRIECAQILYEGLGKMGLDIFVK-DPRHRLP 315
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 106 LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCR 163
+E++G + L+ + + L++ + + + +V + NE GV+ P+ E+ ++ +
Sbjct: 114 VESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAK 173
Query: 164 SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKG--IGALYIR 211
+ DA A+G DI + +D++ S+ K +G P G IGA R
Sbjct: 174 EHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER 224
>pdb|3ISL|A Chain A, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
pdb|3ISL|B Chain B, Crystal Structure Of Ureidoglycine-Glyoxylate
Aminotransferase (Pucg) From Bacillus Subtilis
Length = 416
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 142 VMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190
V +V+ E G I P+ IGE CR++ +F DA +G ++ + +K+D
Sbjct: 140 VAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKID 190
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 139 LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 198
+++++ G QP+ +GELCR G + D ++G + I + + VDL + K
Sbjct: 162 ILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQK 221
Query: 199 IYG 201
G
Sbjct: 222 GLG 224
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 18/156 (11%)
Query: 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKG 204
++ GV+Q + +G LC + D ++G + + +++D M + + G P G
Sbjct: 154 DSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQXVLGAPPG 213
Query: 205 IGAL---------YIRRNPRTRIEA-QIHGGGHEYG------LRSGTLATHQIVGMGEAF 248
I + Y RRN + ++ + G +G + T+++ + G+ EA
Sbjct: 214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAI 273
Query: 249 RLARIE-MKEELKRILFLQKRLYNGLMESIEEIYIN 283
+A E + + R KRLY GL ++ E+Y +
Sbjct: 274 AMACEEGLPALIARHEDCAKRLYRGLQDAGFELYAD 309
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 28/182 (15%)
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA------------ 173
++ + E I +T++V+ GV+ PI EI L G+ H DA
Sbjct: 229 VAAMREAITPNTVVVAGSAPGXPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 288
Query: 174 -AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNP----RTRIEAQIHGGGH 227
V D ++ V +S HK YG KG + RR + I A GG +
Sbjct: 289 LGYPVPPFDFRLEG--VTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY 346
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
G R G L+ M L + +RIL RL G+ +I + I
Sbjct: 347 FSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIPSLKIL 402
Query: 284 GD 285
GD
Sbjct: 403 GD 404
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKG 204
++QP+ E+GE+CR +F+ DA ++G + + +D +S + GP G
Sbjct: 153 MLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQXCLGGPSG 207
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 28/182 (15%)
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA------------ 173
++ + E I +T++V+ GV+ PI EI L G+ H DA
Sbjct: 233 VAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 292
Query: 174 -AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNP----RTRIEAQIHGGGH 227
V D ++ V +S HK YG KG + RR + I A GG +
Sbjct: 293 LGYPVPPFDFRLEG--VTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY 350
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
G R G L+ M L + +RIL RL G+ +I + I
Sbjct: 351 FSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIPSLKIL 406
Query: 284 GD 285
GD
Sbjct: 407 GD 408
>pdb|1H0C|A Chain A, The Crystal Structure Of Human Alanine:glyoxylate
Aminotransferase
Length = 392
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSK 165
E G RV + G TL ++EE + +L+ + + GV+QP+ GELC
Sbjct: 117 ERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRY 176
Query: 166 GVIFHCDAAQAVGKIDINIQNYKVDLM-SFSAHKIYGPKG 204
+ D+ ++G + + +D++ S S + P G
Sbjct: 177 KCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPG 216
>pdb|3R9A|A Chain A, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|C Chain C, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 394
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSK 165
E G RV + G TL ++EE + +L+ + + GV+QP+ GELC
Sbjct: 119 ERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRY 178
Query: 166 GVIFHCDAAQAVGKIDINIQNYKVDLM-SFSAHKIYGPKG 204
+ D+ ++G + + +D++ S S + P G
Sbjct: 179 KCLLLVDSVASLGGTPLYMDRQGIDILYSGSQXALNAPPG 218
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 28/182 (15%)
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA------------ 173
++ + E I +T++V+ GV+ PI EI L G+ H DA
Sbjct: 229 VAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 288
Query: 174 -AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNP----RTRIEAQIHGGGH 227
V D ++ V +S H YG KG + RR + I A GG +
Sbjct: 289 LGYPVPPFDFRLEG--VTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY 346
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
G R G L+ M L + +RIL RL G+ +I + I
Sbjct: 347 FSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIPSLKIL 402
Query: 284 GD 285
GD
Sbjct: 403 GD 404
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 28/182 (15%)
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA------------ 173
++ + E I +T++V+ GV+ PI EI L G+ H DA
Sbjct: 233 VAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 292
Query: 174 -AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNP----RTRIEAQIHGGGH 227
V D ++ V +S H YG KG + RR + I A GG +
Sbjct: 293 LGYPVPPFDFRLEG--VTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY 350
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
G R G L+ M L + +RIL RL G+ +I + I
Sbjct: 351 FSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIPSLKIL 406
Query: 284 GD 285
GD
Sbjct: 407 GD 408
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 28/182 (15%)
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA------------ 173
++ + E I +T++V+ GV+ PI EI L G+ H DA
Sbjct: 229 VAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 288
Query: 174 -AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNP----RTRIEAQIHGGGH 227
V D ++ V +S H YG KG + RR + I A GG +
Sbjct: 289 LGYPVPPFDFRLEG--VTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY 346
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
G R G L+ M L + +RIL RL G+ +I + I
Sbjct: 347 FSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIPSLKIL 402
Query: 284 GD 285
GD
Sbjct: 403 GD 404
>pdb|1J04|A Chain A, Structural Mechanism Of Enzyme Mistargeting In Hereditary
Kidney Stone Disease In Vitro
Length = 392
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSK 165
E G RV + G TL ++EE + +L+ + + GV+QP+ ELC
Sbjct: 117 ERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFRELCHRY 176
Query: 166 GVIFHCDAAQAVGKIDINIQNYKVDLM-SFSAHKIYGPKG 204
+ D+ ++G + + +D++ S S + P G
Sbjct: 177 KCLLLVDSVASLGGTPLYMDRQGIDILYSGSQXALNAPPG 216
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 132 KICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191
K + +VSV + G I PI IG L + G DA + G + + ++ K D+
Sbjct: 130 KAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADI 189
Query: 192 MSFSAHKIYG-PKGIGALYIRRNPRTRIEAQ 221
+K G P G+ + + +++A
Sbjct: 190 YVTGPNKCLGAPPGLTMMGVSERAWAKMKAN 220
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 29/159 (18%)
Query: 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-- 136
+HF K+G + + T+ V +K G + S LE +I
Sbjct: 194 SHFSLKKGAAALGIGTD----------------SVILIKCDERGKMIPSDLERRILEAKQ 237
Query: 137 ----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV--- 189
LVS G P+L + ++C+ + H DAA G + +K+
Sbjct: 238 KGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGV 297
Query: 190 ---DLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHG 224
+ ++++ H + G P AL +R + Q+H
Sbjct: 298 ERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHA 336
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 135 SDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192
+D + + V++E G + PI E+G L G + DA + G I +I +D +
Sbjct: 128 ADPTISHIAXVHSETTTGXLNPIDEVGALAHRYGKTYIVDAXSSFGGIPXDIAALHIDYL 187
Query: 193 SFSAHK-IYGPKGIGALYIRRN 213
SA+K I G G + R
Sbjct: 188 ISSANKCIQGVPGFAFVIAREQ 209
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 72 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE 131
+L I G+ +Y KR HI V E + + + ++E DG R+ + N +T S+ +
Sbjct: 199 HLEIDGS--WYSKRLAHIKGVTEETTTGVHRLYQMEKDG-RLPFPAFNVNDSVTKSKFDN 255
Query: 132 KI-CSDTILVSV-----MLVNNEIGVIQPILEIGELC----RSKGVIFHCDAAQAVGKID 181
C ++++ + +++ +I V+ ++G+ C R G + +
Sbjct: 256 LYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQ 315
Query: 182 INIQNYKVDLMSFSAHK 198
++ Y+V M ++A K
Sbjct: 316 AAMEGYRVVTMEYAADK 332
>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 474
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
G++V + G + L L+ ++ + ++ML N N +G+ + ILEI LC+ GV
Sbjct: 177 GYQVREIPSGPEGEVDLEALKRELGPH--VAALMLTNPNTLGLFERRILEISRLCKEAGV 234
Query: 168 IFHCDAA 174
+ D A
Sbjct: 235 QLYYDGA 241
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 247 AFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304
AF L ++ + + L + R+Y L + + ++ + H+LN+SFN + GE
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--------KFLHSLNVSFNNLCGE 283
>pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRP|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
Length = 384
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 113 VTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171
V L+P + ++EE++ S+ LV++ V GV +P+ ++ R +
Sbjct: 103 VKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVV 162
Query: 172 DAAQAVGKIDINIQNYKVDLMSFSAHK 198
D +VG ++ + + VD+ ++ K
Sbjct: 163 DGVSSVGAEEVKAEEWNVDVYLTASQK 189
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 130 EEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV 189
E K + +L + + G + + +I ++C V + A A+G++ ++++
Sbjct: 141 ETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGA 200
Query: 190 DLMSFSAHK---IYGPKGI 205
D + S HK GP G+
Sbjct: 201 DFIVGSGHKSMAASGPIGV 219
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 121 NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
N L L +E I C L +N+++G + + +G + +KG F C Q G+
Sbjct: 93 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 152
Query: 180 IDINIQN 186
+++N
Sbjct: 153 FPEDVRN 159
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 121 NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
N L L +E I C L +N+++G + + +G + +KG F C Q G+
Sbjct: 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150
Query: 180 IDINIQN 186
+++N
Sbjct: 151 FPEDVRN 157
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 62 IWTSGATESNNLAIKGAAHFY----KKRGKH------IITVQTEHKSVLDSIRKLENDGF 111
I++ G SN +I A + Y K +G + T + H S+ + L
Sbjct: 155 IFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTD 214
Query: 112 RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSK 165
V +K G I + E KI V+ G PI EI ++C
Sbjct: 215 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY 274
Query: 166 GVIFHCDAAQAVG 178
+ H DAA G
Sbjct: 275 NLWLHVDAAWGGG 287
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 62 IWTSGATESNNLAIKGAAHFY----KKRGKH------IITVQTEHKSVLDSIRKLENDGF 111
I++ G SN +I A + Y K +G + T + H S+ + L
Sbjct: 158 IFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTD 217
Query: 112 RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSK 165
V +K G I + E KI V+ G PI EI ++C
Sbjct: 218 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY 277
Query: 166 GVIFHCDAAQAVG 178
+ H DAA G
Sbjct: 278 NLWLHVDAAWGGG 290
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 34/231 (14%)
Query: 62 IWTSG-------ATESNNLAIKGAAHFYKKRGKH---IITVQTE-HKSVLDSIRKLENDG 110
WT G TES AIK A +++ +GK+ I+ + H S+
Sbjct: 83 FWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPK 142
Query: 111 FRVTY--LKP-----KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP----ILEIG 159
F + L P K N + ++ +L + +T + + ++ E GV + + ++
Sbjct: 143 FHKGFEPLVPGFSYAKLNDIDSVYKL---LDEETAGIIIEVIQGEGGVNEASEDFLSKLQ 199
Query: 160 ELCRSKGVIFHCDAAQ-AVGKID----INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNP 214
E+C+ K V+ D Q +G+ N K D+++ A + G IGA+ R
Sbjct: 200 EICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIAL-AKGLGGGVPIGAILAREEV 258
Query: 215 RTRIEAQIHG---GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 262
HG GG+ R+GT+ ++ + R KE+LK +
Sbjct: 259 AQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKEL 309
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 121 NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
N L L +E I C L +N+++G + + +G + +KG F C Q VG+
Sbjct: 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154
Query: 180 I 180
Sbjct: 155 F 155
>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|B Chain B, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|C Chain C, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|D Chain D, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|E Chain E, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|F Chain F, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|G Chain G, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|H Chain H, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|I Chain I, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
Length = 287
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 102 SIRKLENDGFRVTYLK-PKNNGLITLSQLEEKIC-----SDTILVSVMLVNNEIGVIQPI 155
S R+L DG R L PK ++L+ L+ +D+ + V++++ E V
Sbjct: 36 SARQL--DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSG 93
Query: 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF 194
++ EL +G +H + Q K+ ++I+N+ V +++
Sbjct: 94 HDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAM 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,484,736
Number of Sequences: 62578
Number of extensions: 462605
Number of successful extensions: 1233
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 61
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)