Query psy8850
Match_columns 397
No_of_seqs 130 out of 1966
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 20:50:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvm_A Cysteine desulfurase; s 100.0 3.8E-51 1.3E-55 389.1 43.3 396 1-397 26-423 (423)
2 4hvk_A Probable cysteine desul 100.0 1.6E-47 5.5E-52 358.7 41.7 376 1-381 4-381 (382)
3 4eb5_A Probable cysteine desul 100.0 1.6E-46 5.3E-51 352.3 43.2 377 1-382 4-382 (382)
4 1eg5_A Aminotransferase; PLP-d 100.0 8.9E-44 3E-48 333.7 42.5 370 1-375 5-378 (384)
5 3vax_A Putative uncharacterize 100.0 2.2E-44 7.6E-49 339.9 32.2 368 1-372 24-399 (400)
6 1kmj_A Selenocysteine lyase; p 100.0 6.8E-42 2.3E-46 323.3 38.4 359 1-373 27-405 (406)
7 1t3i_A Probable cysteine desul 100.0 1E-40 3.6E-45 316.7 39.1 363 1-375 32-415 (420)
8 3cai_A Possible aminotransfera 100.0 6E-41 2.1E-45 317.0 35.8 353 1-368 30-404 (406)
9 3a9z_A Selenocysteine lyase; P 100.0 2.6E-40 9E-45 315.2 39.1 372 1-375 22-430 (432)
10 3e77_A Phosphoserine aminotran 100.0 5.4E-40 1.9E-44 302.9 27.7 340 1-373 16-375 (377)
11 1iug_A Putative aspartate amin 100.0 5.5E-39 1.9E-43 297.6 28.8 330 1-373 4-348 (352)
12 1elu_A L-cysteine/L-cystine C- 100.0 7.5E-38 2.6E-42 294.1 36.6 338 1-369 20-388 (390)
13 2z9v_A Aspartate aminotransfer 100.0 7.7E-39 2.6E-43 301.1 29.6 340 1-376 12-374 (392)
14 3zrp_A Serine-pyruvate aminotr 100.0 5.5E-39 1.9E-43 301.1 26.8 336 2-375 6-365 (384)
15 2dr1_A PH1308 protein, 386AA l 100.0 3.8E-38 1.3E-42 295.7 32.4 336 1-374 23-380 (386)
16 2huf_A Alanine glyoxylate amin 100.0 1.5E-38 5E-43 299.3 29.5 339 2-376 23-386 (393)
17 3qm2_A Phosphoserine aminotran 100.0 1E-39 3.5E-44 303.0 20.4 337 1-373 30-385 (386)
18 3nnk_A Ureidoglycine-glyoxylat 100.0 9.7E-38 3.3E-42 295.4 29.8 335 3-375 18-392 (411)
19 2yrr_A Aminotransferase, class 100.0 1.4E-37 4.9E-42 288.1 26.8 331 2-372 4-352 (353)
20 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.2E-37 4.1E-42 290.7 26.2 341 1-373 12-370 (371)
21 3e9k_A Kynureninase; kynurenin 100.0 1.3E-37 4.3E-42 299.3 27.0 347 1-373 71-461 (465)
22 3isl_A Purine catabolism prote 100.0 3E-37 1E-41 292.5 28.1 311 37-375 40-392 (416)
23 1vjo_A Alanine--glyoxylate ami 100.0 4.9E-37 1.7E-41 288.9 29.3 332 1-370 37-392 (393)
24 2ch1_A 3-hydroxykynurenine tra 100.0 7.3E-37 2.5E-41 288.0 29.6 337 2-374 22-384 (396)
25 3kgw_A Alanine-glyoxylate amin 100.0 6.6E-37 2.3E-41 287.8 28.5 338 2-375 27-390 (393)
26 3m5u_A Phosphoserine aminotran 100.0 4.3E-37 1.5E-41 282.8 23.4 332 2-373 9-360 (361)
27 1qz9_A Kynureninase; kynurenin 100.0 8.8E-36 3E-40 282.5 32.8 347 1-380 32-409 (416)
28 3ffr_A Phosphoserine aminotran 100.0 1E-35 3.5E-40 276.6 31.5 333 2-370 8-361 (362)
29 1m32_A 2-aminoethylphosphonate 100.0 2.3E-36 8E-41 281.3 27.1 330 3-372 9-364 (366)
30 3f9t_A TDC, L-tyrosine decarbo 100.0 5.3E-35 1.8E-39 275.0 36.0 326 6-371 39-396 (397)
31 3f0h_A Aminotransferase; RER07 100.0 3E-35 1E-39 275.0 30.4 331 3-371 24-372 (376)
32 2c0r_A PSAT, phosphoserine ami 100.0 8.1E-35 2.8E-39 270.8 28.8 335 1-373 7-361 (362)
33 2bkw_A Alanine-glyoxylate amin 100.0 4.2E-35 1.4E-39 274.8 25.8 335 3-372 10-383 (385)
34 1w23_A Phosphoserine aminotran 100.0 3.2E-35 1.1E-39 273.3 23.4 334 2-372 7-359 (360)
35 2dgk_A GAD-beta, GADB, glutama 100.0 8.4E-33 2.9E-37 264.6 38.3 347 8-380 53-441 (452)
36 3ffh_A Histidinol-phosphate am 100.0 1.1E-33 3.8E-38 263.2 30.9 307 7-369 44-362 (363)
37 3dzz_A Putative pyridoxal 5'-p 100.0 7.7E-34 2.6E-38 266.8 29.4 324 8-373 40-389 (391)
38 3hbx_A GAD 1, glutamate decarb 100.0 2.4E-32 8.3E-37 264.0 38.9 343 6-376 65-447 (502)
39 3get_A Histidinol-phosphate am 100.0 1.6E-33 5.6E-38 262.2 29.5 306 7-370 42-364 (365)
40 1v2d_A Glutamine aminotransfer 100.0 3.8E-34 1.3E-38 268.1 25.3 319 8-375 38-373 (381)
41 3dyd_A Tyrosine aminotransfera 100.0 1.4E-33 4.8E-38 268.1 29.5 324 7-374 70-425 (427)
42 3mad_A Sphingosine-1-phosphate 100.0 1.3E-32 4.6E-37 267.4 36.6 336 9-376 108-472 (514)
43 3euc_A Histidinol-phosphate am 100.0 3E-33 1E-37 260.7 29.8 307 8-370 43-365 (367)
44 1gd9_A Aspartate aminotransfer 100.0 3.2E-33 1.1E-37 262.6 30.1 319 8-373 39-386 (389)
45 3ly1_A Putative histidinol-pho 100.0 2.4E-33 8.3E-38 260.0 28.8 307 8-372 29-351 (354)
46 3mc6_A Sphingosine-1-phosphate 100.0 1E-32 3.5E-37 267.4 34.2 338 8-376 75-440 (497)
47 4dq6_A Putative pyridoxal phos 100.0 4E-33 1.4E-37 262.0 30.3 320 8-370 45-390 (391)
48 1b5p_A Protein (aspartate amin 100.0 4.3E-33 1.5E-37 261.3 27.7 315 8-371 44-383 (385)
49 2w8t_A SPT, serine palmitoyltr 100.0 2.9E-32 1E-36 259.0 33.2 323 8-375 78-417 (427)
50 1j32_A Aspartate aminotransfer 100.0 8.6E-33 2.9E-37 259.5 29.1 322 8-373 43-387 (388)
51 3a2b_A Serine palmitoyltransfe 100.0 4.1E-33 1.4E-37 262.6 26.8 321 9-374 58-393 (398)
52 1bw0_A TAT, protein (tyrosine 100.0 6.3E-33 2.2E-37 262.9 28.0 325 6-374 48-414 (416)
53 3kax_A Aminotransferase, class 100.0 7.2E-33 2.5E-37 259.5 27.9 321 8-370 37-382 (383)
54 2z61_A Probable aspartate amin 100.0 1.6E-33 5.5E-38 262.8 23.3 308 9-371 43-369 (370)
55 2o0r_A RV0858C (N-succinyldiam 100.0 3.3E-33 1.1E-37 264.4 25.4 339 8-378 38-401 (411)
56 3aow_A Putative uncharacterize 100.0 2.5E-33 8.5E-38 267.6 24.7 326 9-375 92-447 (448)
57 3nra_A Aspartate aminotransfer 100.0 1.7E-33 5.8E-38 266.0 23.3 327 7-374 52-406 (407)
58 2x5d_A Probable aminotransfera 100.0 4E-33 1.4E-37 263.9 25.3 325 9-379 51-404 (412)
59 3l8a_A METC, putative aminotra 100.0 8.8E-33 3E-37 262.2 27.1 321 8-371 74-420 (421)
60 2qma_A Diaminobutyrate-pyruvat 100.0 1.1E-31 3.6E-36 259.9 35.1 344 1-373 104-496 (497)
61 1xi9_A Putative transaminase; 100.0 1.8E-33 6.1E-38 265.8 22.0 319 8-373 54-403 (406)
62 1c7n_A Cystalysin; transferase 100.0 2.8E-32 9.5E-37 257.0 29.4 326 8-375 44-395 (399)
63 2zyj_A Alpha-aminodipate amino 100.0 1.1E-33 3.8E-38 266.4 19.8 327 9-375 48-395 (397)
64 1u08_A Hypothetical aminotrans 100.0 3.4E-32 1.2E-36 255.3 29.5 320 8-368 43-385 (386)
65 3g0t_A Putative aminotransfera 100.0 8.8E-33 3E-37 263.6 25.9 322 8-372 57-436 (437)
66 3ele_A Amino transferase; RER0 100.0 2E-32 6.8E-37 257.9 27.9 325 8-374 48-397 (398)
67 3h14_A Aminotransferase, class 100.0 1.5E-32 5.2E-37 258.1 26.9 322 8-378 44-387 (391)
68 3ke3_A Putative serine-pyruvat 100.0 1.2E-32 4.3E-37 257.5 24.9 335 9-374 9-377 (379)
69 2fnu_A Aminotransferase; prote 100.0 6.5E-32 2.2E-36 252.3 29.5 335 6-373 8-372 (375)
70 1rv3_A Serine hydroxymethyltra 100.0 2.8E-33 9.6E-38 269.4 20.6 333 4-372 51-430 (483)
71 3ftb_A Histidinol-phosphate am 100.0 1.1E-31 3.7E-36 249.5 30.5 306 8-371 39-359 (361)
72 1svv_A Threonine aldolase; str 100.0 1.6E-32 5.5E-37 254.7 24.8 319 1-373 18-358 (359)
73 1vp4_A Aminotransferase, putat 100.0 2.9E-33 9.9E-38 265.9 20.2 327 9-376 59-421 (425)
74 3tqx_A 2-amino-3-ketobutyrate 100.0 2.4E-32 8.2E-37 257.4 26.2 321 9-373 58-396 (399)
75 3fdb_A Beta C-S lyase, putativ 100.0 1.3E-32 4.5E-37 257.2 24.3 316 8-372 36-375 (377)
76 2dou_A Probable N-succinyldiam 100.0 2.3E-32 7.8E-37 255.5 25.6 315 9-370 39-375 (376)
77 1o4s_A Aspartate aminotransfer 100.0 2E-32 7E-37 257.0 25.2 311 8-371 54-387 (389)
78 1d2f_A MALY protein; aminotran 100.0 1.1E-31 3.9E-36 252.1 30.2 324 8-373 41-389 (390)
79 1fc4_A 2-amino-3-ketobutyrate 100.0 3.8E-32 1.3E-36 256.3 26.9 320 9-374 60-398 (401)
80 1yiz_A Kynurenine aminotransfe 100.0 7E-32 2.4E-36 256.7 28.1 328 8-370 50-426 (429)
81 2jis_A Cysteine sulfinic acid 100.0 2.2E-31 7.6E-36 258.6 31.5 347 2-372 113-514 (515)
82 2o1b_A Aminotransferase, class 100.0 1.5E-32 5E-37 259.3 22.4 318 9-372 61-402 (404)
83 2gb3_A Aspartate aminotransfer 100.0 1.8E-32 6.3E-37 259.1 23.0 322 8-376 56-405 (409)
84 3p1t_A Putative histidinol-pho 100.0 1.6E-31 5.5E-36 246.0 28.2 302 6-370 27-334 (337)
85 3hdo_A Histidinol-phosphate am 100.0 1.6E-31 5.4E-36 248.4 28.3 305 7-371 38-353 (360)
86 1bs0_A Protein (8-amino-7-oxon 100.0 8.9E-32 3E-36 252.2 26.9 316 8-369 53-383 (384)
87 2z67_A O-phosphoseryl-tRNA(SEC 100.0 4.5E-32 1.6E-36 259.5 24.9 330 1-370 84-455 (456)
88 2zc0_A Alanine glyoxylate tran 100.0 3.4E-32 1.2E-36 257.0 23.2 324 9-373 50-404 (407)
89 3cq5_A Histidinol-phosphate am 100.0 5.8E-31 2E-35 245.4 31.0 307 8-370 43-365 (369)
90 3fvs_A Kynurenine--oxoglutarat 100.0 2.5E-32 8.4E-37 259.3 21.0 329 8-372 41-421 (422)
91 3jtx_A Aminotransferase; NP_28 100.0 4.2E-31 1.4E-35 248.7 28.4 323 8-370 43-395 (396)
92 1lc5_A COBD, L-threonine-O-3-p 100.0 5.2E-31 1.8E-35 245.3 28.0 311 8-374 37-361 (364)
93 3op7_A Aminotransferase class 100.0 1.6E-31 5.6E-36 249.7 24.2 294 42-374 64-372 (375)
94 2rfv_A Methionine gamma-lyase; 100.0 2.3E-31 7.8E-36 250.6 24.9 335 2-369 31-396 (398)
95 2fyf_A PSAT, phosphoserine ami 100.0 2.1E-31 7.2E-36 250.9 24.6 329 2-372 44-397 (398)
96 2bwn_A 5-aminolevulinate synth 100.0 3.4E-31 1.2E-35 249.7 26.0 323 9-373 61-400 (401)
97 3b46_A Aminotransferase BNA3; 100.0 1E-31 3.4E-36 256.8 22.2 320 8-368 70-442 (447)
98 1fg7_A Histidinol phosphate am 100.0 1.1E-30 3.9E-35 242.1 28.6 280 43-368 60-353 (356)
99 1wyu_B Glycine dehydrogenase s 100.0 2E-30 6.7E-35 249.4 31.0 335 8-372 77-440 (474)
100 1js3_A DDC;, DOPA decarboxylas 100.0 2.8E-30 9.7E-35 249.4 32.2 334 11-376 88-477 (486)
101 3if2_A Aminotransferase; YP_26 100.0 7.5E-32 2.6E-36 257.7 20.7 341 10-375 45-442 (444)
102 2okj_A Glutamate decarboxylase 100.0 4.5E-30 1.5E-34 249.0 33.3 316 33-372 124-501 (504)
103 1gc0_A Methionine gamma-lyase; 100.0 1.2E-30 4.1E-35 245.6 27.8 334 2-369 32-397 (398)
104 3e2y_A Kynurenine-oxoglutarate 100.0 2.2E-31 7.7E-36 251.7 22.8 320 8-368 36-408 (410)
105 1v72_A Aldolase; PLP-dependent 100.0 2.9E-31 1E-35 246.0 22.8 321 1-375 12-355 (356)
106 1wyu_A Glycine dehydrogenase ( 100.0 3.3E-30 1.1E-34 245.6 30.2 300 36-370 103-437 (438)
107 3ezs_A Aminotransferase ASPB; 100.0 4.2E-31 1.4E-35 246.9 23.5 315 8-372 36-374 (376)
108 3piu_A 1-aminocyclopropane-1-c 100.0 2.7E-31 9.1E-36 253.2 21.6 296 42-375 87-434 (435)
109 3uwc_A Nucleotide-sugar aminot 100.0 8.6E-31 2.9E-35 244.6 24.3 330 13-372 21-370 (374)
110 3kki_A CAI-1 autoinducer synth 100.0 6.4E-30 2.2E-34 241.7 30.4 318 8-372 73-403 (409)
111 3qgu_A LL-diaminopimelate amin 100.0 2E-30 6.7E-35 248.2 27.2 323 8-371 82-438 (449)
112 3k40_A Aromatic-L-amino-acid d 100.0 1.6E-29 5.6E-34 242.6 32.8 313 32-374 104-472 (475)
113 2r2n_A Kynurenine/alpha-aminoa 100.0 6.4E-30 2.2E-34 242.8 29.5 299 41-373 82-424 (425)
114 2fq6_A Cystathionine beta-lyas 100.0 1.8E-30 6.3E-35 244.3 25.1 308 33-368 74-413 (415)
115 3frk_A QDTB; aminotransferase, 100.0 8.5E-31 2.9E-35 244.6 22.6 332 10-372 16-367 (373)
116 2vi8_A Serine hydroxymethyltra 100.0 2.3E-31 7.8E-36 251.2 18.9 340 2-373 28-387 (405)
117 2cb1_A O-acetyl homoserine sul 100.0 3E-29 1E-33 237.0 33.0 310 35-368 50-411 (412)
118 4e1o_A HDC, histidine decarbox 100.0 1E-28 3.4E-33 237.7 37.0 314 32-374 109-479 (481)
119 1qgn_A Protein (cystathionine 100.0 4.7E-30 1.6E-34 243.0 26.9 309 32-372 105-444 (445)
120 3tcm_A Alanine aminotransferas 100.0 1.4E-29 4.7E-34 244.9 30.6 330 9-375 107-496 (500)
121 1b9h_A AHBA synthase, protein 100.0 3.8E-30 1.3E-34 241.5 25.8 330 11-372 17-387 (388)
122 1iay_A ACC synthase 2, 1-amino 100.0 1E-30 3.6E-35 248.5 22.0 292 43-372 85-426 (428)
123 3vp6_A Glutamate decarboxylase 100.0 5.3E-29 1.8E-33 241.0 34.0 316 32-372 126-504 (511)
124 2x5f_A Aspartate_tyrosine_phen 100.0 4.3E-31 1.5E-35 251.4 16.9 295 42-373 89-429 (430)
125 3ez1_A Aminotransferase MOCR f 100.0 2.3E-29 8E-34 238.9 28.8 302 41-375 70-417 (423)
126 3g7q_A Valine-pyruvate aminotr 100.0 1.1E-30 3.8E-35 247.5 19.5 307 40-375 74-415 (417)
127 1mdo_A ARNB aminotransferase; 100.0 3.7E-29 1.3E-33 235.1 29.3 333 8-373 17-386 (393)
128 3qhx_A Cystathionine gamma-syn 100.0 1.3E-29 4.5E-34 237.7 25.9 307 32-366 57-391 (392)
129 3ei9_A LL-diaminopimelate amin 100.0 1.9E-29 6.7E-34 240.1 27.2 320 7-371 68-426 (432)
130 3ppl_A Aspartate aminotransfer 100.0 2.2E-30 7.7E-35 246.2 20.6 303 40-374 77-421 (427)
131 3b8x_A WBDK, pyridoxamine 5-ph 100.0 2.4E-29 8.1E-34 236.2 27.2 335 5-366 9-389 (390)
132 3asa_A LL-diaminopimelate amin 100.0 8.5E-30 2.9E-34 240.1 23.0 319 8-373 46-393 (400)
133 2dkj_A Serine hydroxymethyltra 100.0 3.1E-30 1E-34 243.6 20.0 334 4-372 30-387 (407)
134 3fkd_A L-threonine-O-3-phospha 100.0 1.8E-29 6.3E-34 233.5 24.5 303 7-372 27-341 (350)
135 1n8p_A Cystathionine gamma-lya 100.0 9.7E-30 3.3E-34 238.6 22.7 308 32-369 46-391 (393)
136 3rq1_A Aminotransferase class 100.0 8E-30 2.7E-34 241.7 21.8 322 2-375 50-417 (418)
137 3d6k_A Putative aminotransfera 100.0 4.5E-29 1.5E-33 236.7 26.7 302 41-375 76-420 (422)
138 3ndn_A O-succinylhomoserine su 100.0 1E-28 3.5E-33 232.6 28.9 307 32-370 72-413 (414)
139 1pff_A Methionine gamma-lyase; 100.0 9.7E-30 3.3E-34 233.5 21.3 297 45-369 2-330 (331)
140 3ihj_A Alanine aminotransferas 100.0 8.6E-29 2.9E-33 238.9 28.8 329 10-376 103-496 (498)
141 2eh6_A Acoat, acetylornithine 100.0 5.7E-29 2E-33 232.4 26.7 304 9-369 45-374 (375)
142 2oga_A Transaminase; PLP-depen 100.0 5.5E-29 1.9E-33 234.4 26.7 331 10-373 43-396 (399)
143 1e5e_A MGL, methionine gamma-l 100.0 4.6E-29 1.6E-33 234.9 26.1 309 33-374 54-396 (404)
144 1uu1_A Histidinol-phosphate am 100.0 3.3E-29 1.1E-33 230.4 24.3 299 2-369 25-334 (335)
145 1o69_A Aminotransferase; struc 100.0 5.9E-29 2E-33 233.8 26.4 329 9-371 10-385 (394)
146 3ruy_A Ornithine aminotransfer 100.0 2.3E-28 7.7E-33 229.7 29.7 308 9-370 53-391 (392)
147 3n0l_A Serine hydroxymethyltra 100.0 2.1E-29 7.1E-34 238.7 22.8 336 4-372 32-388 (417)
148 2a7v_A Serine hydroxymethyltra 100.0 6.8E-29 2.3E-33 236.7 26.0 337 4-374 61-442 (490)
149 4f4e_A Aromatic-amino-acid ami 100.0 1.2E-29 4.2E-34 240.5 20.4 316 2-370 61-419 (420)
150 3fsl_A Aromatic-amino-acid ami 100.0 6.2E-30 2.1E-34 240.8 17.7 318 2-369 38-396 (397)
151 2c81_A Glutamine-2-deoxy-scyll 100.0 1.6E-28 5.6E-33 232.6 27.4 344 8-373 13-414 (418)
152 3dr4_A Putative perosamine syn 100.0 7.3E-29 2.5E-33 233.0 24.2 329 8-370 33-390 (391)
153 1cs1_A CGS, protein (cystathio 100.0 7.3E-28 2.5E-32 225.8 29.4 309 32-369 43-383 (386)
154 2po3_A 4-dehydrase; external a 100.0 1.3E-27 4.5E-32 226.8 31.5 337 9-375 30-388 (424)
155 1jg8_A L-ALLO-threonine aldola 100.0 2.8E-29 9.5E-34 232.0 19.4 318 1-372 8-345 (347)
156 3t18_A Aminotransferase class 100.0 3.8E-29 1.3E-33 236.7 20.6 319 2-375 49-412 (413)
157 3gbx_A Serine hydroxymethyltra 100.0 1.9E-29 6.4E-34 239.2 18.3 338 3-373 36-396 (420)
158 1s0a_A Adenosylmethionine-8-am 100.0 5.3E-28 1.8E-32 229.9 28.0 325 9-374 60-425 (429)
159 3nyt_A Aminotransferase WBPE; 100.0 9.6E-29 3.3E-33 230.2 22.1 327 9-369 14-360 (367)
160 2x3l_A ORN/Lys/Arg decarboxyla 100.0 1.8E-29 6.1E-34 240.5 17.4 281 41-373 57-353 (446)
161 3acz_A Methionine gamma-lyase; 100.0 6E-28 2E-32 226.3 25.9 303 32-366 50-386 (389)
162 3cog_A Cystathionine gamma-lya 100.0 2.2E-28 7.4E-33 230.1 22.6 301 40-370 66-399 (403)
163 2ay1_A Aroat, aromatic amino a 100.0 1.9E-29 6.4E-34 237.2 14.3 314 5-369 41-392 (394)
164 1ibj_A CBL, cystathionine beta 100.0 2.1E-28 7.2E-33 233.4 21.2 303 40-371 132-460 (464)
165 3f6t_A Aspartate aminotransfer 100.0 2.1E-28 7.3E-33 238.0 21.0 333 9-375 116-527 (533)
166 3bb8_A CDP-4-keto-6-deoxy-D-gl 100.0 2.1E-27 7.1E-32 226.3 27.2 334 8-371 40-434 (437)
167 1vef_A Acetylornithine/acetyl- 100.0 1.9E-27 6.4E-32 223.7 26.3 307 7-370 60-394 (395)
168 2q7w_A Aspartate aminotransfer 100.0 5.1E-29 1.7E-33 234.4 15.2 316 3-369 39-395 (396)
169 3ri6_A O-acetylhomoserine sulf 100.0 2.6E-27 8.9E-32 223.5 26.8 314 32-370 73-429 (430)
170 2ctz_A O-acetyl-L-homoserine s 100.0 2.2E-26 7.5E-31 217.8 33.1 311 35-370 52-420 (421)
171 7aat_A Aspartate aminotransfer 100.0 3E-28 1E-32 229.6 20.0 319 2-370 40-400 (401)
172 3ju7_A Putative PLP-dependent 100.0 3.7E-28 1.3E-32 226.4 20.2 336 8-372 13-374 (377)
173 2ord_A Acoat, acetylornithine 100.0 2.3E-27 7.8E-32 223.3 25.6 310 7-372 55-396 (397)
174 1ajs_A Aspartate aminotransfer 100.0 1.6E-28 5.4E-33 232.3 17.7 321 3-373 43-411 (412)
175 1yaa_A Aspartate aminotransfer 100.0 9.8E-29 3.3E-33 233.8 15.0 316 2-372 41-410 (412)
176 1ax4_A Tryptophanase; tryptoph 100.0 7.3E-28 2.5E-32 231.5 20.8 343 2-376 47-444 (467)
177 3ecd_A Serine hydroxymethyltra 100.0 5E-27 1.7E-31 222.8 24.9 337 4-373 39-397 (425)
178 3h7f_A Serine hydroxymethyltra 100.0 2.4E-27 8E-32 226.4 22.5 335 4-371 52-412 (447)
179 1c4k_A Protein (ornithine deca 100.0 5.1E-27 1.7E-31 233.3 25.6 302 42-376 174-569 (730)
180 4adb_A Succinylornithine trans 100.0 7.9E-27 2.7E-31 220.2 25.8 315 8-375 55-402 (406)
181 3b1d_A Betac-S lyase; HET: PLP 99.9 1.4E-30 4.9E-35 244.7 0.0 318 8-371 44-391 (392)
182 3meb_A Aspartate aminotransfer 100.0 1.5E-27 5.1E-32 227.8 20.9 316 1-372 60-443 (448)
183 2eo5_A 419AA long hypothetical 100.0 2.9E-26 9.8E-31 217.2 29.4 309 10-373 61-418 (419)
184 1sff_A 4-aminobutyrate aminotr 100.0 1.7E-26 5.7E-31 219.4 27.6 320 7-374 56-425 (426)
185 3nx3_A Acoat, acetylornithine 100.0 4.5E-26 1.5E-30 214.3 29.5 313 8-372 52-394 (395)
186 1z7d_A Ornithine aminotransfer 100.0 8.8E-26 3E-30 214.5 31.4 316 9-376 82-432 (433)
187 2pb2_A Acetylornithine/succiny 100.0 3.6E-26 1.2E-30 216.5 27.9 315 7-373 72-418 (420)
188 3dxv_A Alpha-amino-epsilon-cap 100.0 2.1E-26 7.3E-31 219.5 26.0 322 9-375 60-427 (439)
189 2aeu_A Hypothetical protein MJ 100.0 8.9E-27 3E-31 217.1 22.1 308 6-374 39-372 (374)
190 3i4j_A Aminotransferase, class 99.9 7.6E-26 2.6E-30 215.1 26.6 333 8-373 45-428 (430)
191 3dod_A Adenosylmethionine-8-am 99.9 6.7E-25 2.3E-29 209.6 32.2 331 7-376 59-446 (448)
192 2vyc_A Biodegradative arginine 99.9 1.1E-25 3.8E-30 225.8 27.1 297 42-376 206-608 (755)
193 3nmy_A Xometc, cystathionine g 99.9 1.3E-25 4.4E-30 210.5 25.8 307 32-371 58-397 (400)
194 3n5m_A Adenosylmethionine-8-am 99.9 7.6E-25 2.6E-29 209.5 31.3 331 7-372 64-451 (452)
195 3gju_A Putative aminotransfera 99.9 4.2E-25 1.4E-29 211.6 29.3 334 7-375 66-458 (460)
196 3tfu_A Adenosylmethionine-8-am 99.9 1.1E-25 3.9E-30 214.9 25.2 328 7-374 90-454 (457)
197 2ez2_A Beta-tyrosinase, tyrosi 99.9 6.6E-26 2.3E-30 217.2 23.6 308 40-375 74-433 (456)
198 3hmu_A Aminotransferase, class 99.9 5.4E-25 1.8E-29 211.0 29.6 341 7-397 70-470 (472)
199 3a8u_X Omega-amino acid--pyruv 99.9 5.4E-26 1.9E-30 217.3 22.4 327 7-373 65-447 (449)
200 2oat_A Ornithine aminotransfer 99.9 3.1E-25 1.1E-29 211.1 26.8 311 9-372 93-438 (439)
201 3lws_A Aromatic amino acid bet 99.9 6E-26 2E-30 210.4 21.3 288 41-370 47-356 (357)
202 1zod_A DGD, 2,2-dialkylglycine 99.9 1.9E-25 6.4E-30 212.6 25.2 325 8-373 59-432 (433)
203 3k7y_A Aspartate aminotransfer 99.9 5.6E-26 1.9E-30 213.1 20.0 310 7-372 46-404 (405)
204 2oqx_A Tryptophanase; lyase, p 99.9 3E-26 1E-30 220.3 18.6 337 1-375 44-444 (467)
205 3bwn_A AT1G70560, L-tryptophan 99.9 1.8E-26 6E-31 216.5 16.6 280 44-372 71-386 (391)
206 4a6r_A Omega transaminase; tra 99.9 1.3E-24 4.4E-29 208.2 29.3 323 7-375 65-451 (459)
207 2cjg_A L-lysine-epsilon aminot 99.9 4.2E-25 1.4E-29 210.9 25.5 324 7-373 69-448 (449)
208 3i5t_A Aminotransferase; pyrid 99.9 2.2E-24 7.5E-29 207.1 29.9 330 7-376 69-457 (476)
209 2zy4_A L-aspartate beta-decarb 99.9 1.6E-25 5.6E-30 217.7 21.7 292 58-375 165-524 (546)
210 3pj0_A LMO0305 protein; struct 99.9 2.5E-25 8.6E-30 206.4 21.6 291 40-369 47-358 (359)
211 4ffc_A 4-aminobutyrate aminotr 99.9 1.7E-23 5.9E-28 199.8 31.0 324 7-374 79-450 (453)
212 3jzl_A Putative cystathionine 99.9 3.8E-24 1.3E-28 200.3 24.9 283 11-311 32-336 (409)
213 3l44_A Glutamate-1-semialdehyd 99.9 2.6E-24 8.7E-29 204.8 24.0 314 8-375 71-432 (434)
214 4eu1_A Mitochondrial aspartate 99.9 1.1E-24 3.6E-29 205.9 20.7 283 42-370 80-408 (409)
215 3oks_A 4-aminobutyrate transam 99.9 1.9E-23 6.6E-28 199.5 28.1 322 7-372 76-450 (451)
216 3i16_A Aluminum resistance pro 99.9 4E-24 1.4E-28 200.8 22.5 283 11-311 46-353 (427)
217 2hox_A ALLIIN lyase 1; cystein 99.9 5.1E-26 1.7E-30 215.6 9.7 279 43-371 102-423 (427)
218 2cy8_A D-phgat, D-phenylglycin 99.9 9.5E-24 3.2E-28 201.9 25.0 318 8-380 73-442 (453)
219 3fq8_A Glutamate-1-semialdehyd 99.9 8.2E-25 2.8E-29 207.8 16.7 311 8-372 68-426 (427)
220 2epj_A Glutamate-1-semialdehyd 99.9 4.9E-24 1.7E-28 202.8 21.9 311 8-373 72-431 (434)
221 4h51_A Aspartate aminotransfer 99.9 2.9E-24 9.9E-29 201.4 19.3 327 2-375 56-419 (420)
222 3hvy_A Cystathionine beta-lyas 99.9 6.3E-23 2.1E-27 192.6 25.9 270 11-299 47-340 (427)
223 3k28_A Glutamate-1-semialdehyd 99.9 6.3E-24 2.2E-28 201.7 19.3 311 8-373 69-427 (429)
224 4e77_A Glutamate-1-semialdehyd 99.9 5.1E-23 1.8E-27 195.5 25.6 311 8-372 69-428 (429)
225 3n75_A LDC, lysine decarboxyla 99.9 2E-22 7E-27 198.7 27.9 297 42-378 196-565 (715)
226 3ou5_A Serine hydroxymethyltra 99.9 2.9E-22 9.9E-27 183.0 26.6 334 4-371 61-439 (490)
227 2e7u_A Glutamate-1-semialdehyd 99.9 7.4E-23 2.5E-27 194.1 21.1 307 7-369 67-423 (424)
228 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 7.5E-23 2.6E-27 187.7 19.1 312 46-378 122-466 (501)
229 3bc8_A O-phosphoseryl-tRNA(SEC 99.9 1.3E-21 4.4E-26 182.3 27.4 317 39-375 96-445 (450)
230 1ohv_A 4-aminobutyrate aminotr 99.9 4.6E-22 1.6E-26 190.7 24.0 321 7-373 78-471 (472)
231 3ht4_A Aluminum resistance pro 99.9 7.9E-22 2.7E-26 186.1 22.9 255 42-311 66-342 (431)
232 4ao9_A Beta-phenylalanine amin 99.9 4.7E-21 1.6E-25 180.4 22.6 316 7-379 102-452 (454)
233 4atq_A 4-aminobutyrate transam 99.9 4E-19 1.4E-23 168.1 32.4 326 6-372 78-454 (456)
234 2yky_A Beta-transaminase; tran 99.8 3.7E-23 1.3E-27 196.1 0.0 316 8-376 116-463 (465)
235 4e3q_A Pyruvate transaminase; 99.8 7.7E-20 2.6E-24 173.6 19.9 330 7-375 82-470 (473)
236 4a0g_A Adenosylmethionine-8-am 99.8 6.3E-18 2.1E-22 170.9 17.5 327 7-373 395-828 (831)
237 1tks_A 3,4-dihydroxy-2-butanon 72.1 5.9 0.0002 32.1 5.1 43 129-171 152-194 (204)
238 1y80_A Predicted cobalamin bin 68.5 39 0.0013 27.3 9.8 64 105-174 111-179 (210)
239 3kts_A Glycerol uptake operon 68.5 4.9 0.00017 32.4 4.0 50 125-179 18-69 (192)
240 3mfq_A TROA, high-affinity zin 60.8 22 0.00075 30.6 7.0 75 87-171 164-243 (282)
241 2yva_A DNAA initiator-associat 59.4 48 0.0016 26.3 8.6 38 130-171 104-141 (196)
242 4f6o_A Metacaspase-1; rossmann 59.2 20 0.00068 31.9 6.5 60 40-100 74-142 (350)
243 3mio_A DHBP synthase, 3,4-dihy 58.3 20 0.00069 29.1 5.8 38 134-171 156-194 (206)
244 4g81_D Putative hexonate dehyd 58.2 77 0.0026 26.6 9.9 73 53-133 4-77 (255)
245 1x92_A APC5045, phosphoheptose 57.5 70 0.0024 25.4 9.4 41 127-171 105-145 (199)
246 1snn_A DHBP synthase, 3,4-dihy 57.0 16 0.00054 30.2 5.0 40 131-171 173-212 (227)
247 1qyd_A Pinoresinol-lariciresin 54.9 99 0.0034 26.3 10.6 57 109-171 55-113 (313)
248 2orv_A Thymidine kinase; TP4A 54.4 28 0.00096 29.0 6.2 90 68-175 34-125 (234)
249 2yxb_A Coenzyme B12-dependent 53.3 60 0.0021 25.0 7.8 55 106-166 42-97 (161)
250 1g57_A DHBP synthase, 3,4-dihy 53.0 27 0.00091 28.6 5.7 36 135-171 166-201 (217)
251 2i2x_B MTAC, methyltransferase 52.5 1E+02 0.0035 25.8 11.1 61 105-171 146-209 (258)
252 4gqr_A Pancreatic alpha-amylas 50.8 8.8 0.0003 35.9 3.0 32 145-176 69-100 (496)
253 2gjh_A Designed protein; oblig 50.7 27 0.00093 20.6 3.9 30 344-374 2-31 (62)
254 3ezx_A MMCP 1, monomethylamine 49.7 1E+02 0.0036 25.0 11.9 63 105-173 115-184 (215)
255 3dm5_A SRP54, signal recogniti 49.2 95 0.0033 28.6 9.6 34 344-377 397-430 (443)
256 3ujp_A Mn transporter subunit; 48.9 91 0.0031 27.1 9.0 71 86-169 190-265 (307)
257 3i6i_A Putative leucoanthocyan 48.7 1.4E+02 0.0046 26.0 11.6 99 60-171 12-116 (346)
258 3jug_A Beta-mannanase; TIM-bar 47.7 25 0.00086 31.3 5.3 51 102-175 59-109 (345)
259 1vb5_A Translation initiation 47.6 1.3E+02 0.0045 25.6 13.3 105 57-173 108-218 (276)
260 2qlc_A DNA repair protein RADC 46.3 34 0.0012 25.3 5.0 45 124-169 54-106 (126)
261 3gi1_A LBP, laminin-binding pr 45.6 1.1E+02 0.0036 26.3 8.9 74 85-171 178-256 (286)
262 1k4i_A 3,4-dihydroxy-2-butanon 45.0 35 0.0012 28.2 5.2 39 132-171 163-212 (233)
263 3sho_A Transcriptional regulat 44.9 86 0.0029 24.4 7.8 35 133-171 85-119 (187)
264 1g94_A Alpha-amylase; beta-alp 44.7 13 0.00044 34.5 3.1 32 145-176 57-88 (448)
265 3bzy_B ESCU; auto cleavage pro 43.6 12 0.00042 25.4 2.0 20 155-174 29-48 (83)
266 2j9r_A Thymidine kinase; TK1, 43.6 55 0.0019 26.8 6.3 94 68-174 43-136 (214)
267 3a11_A Translation initiation 43.4 1.7E+02 0.0059 25.7 13.9 106 57-174 140-251 (338)
268 3l6u_A ABC-type sugar transpor 43.0 56 0.0019 27.5 6.8 60 107-171 35-94 (293)
269 2abq_A Fructose 1-phosphate ki 42.6 1.6E+02 0.0054 25.1 10.4 51 123-174 107-163 (306)
270 3m9w_A D-xylose-binding peripl 42.1 46 0.0016 28.5 6.2 73 94-171 15-88 (313)
271 2r6j_A Eugenol synthase 1; phe 42.0 1.5E+02 0.0052 25.3 9.6 97 60-171 13-112 (318)
272 3e2i_A Thymidine kinase; Zn-bi 41.8 49 0.0017 27.1 5.7 84 84-175 54-137 (219)
273 3hh8_A Metal ABC transporter s 41.5 1E+02 0.0035 26.5 8.1 71 87-170 184-259 (294)
274 2o1e_A YCDH; alpha-beta protei 41.3 1.2E+02 0.004 26.4 8.6 73 85-170 189-266 (312)
275 3ayr_A Endoglucanase; TIM barr 40.7 53 0.0018 29.4 6.5 57 99-175 64-125 (376)
276 3uug_A Multiple sugar-binding 39.9 61 0.0021 27.9 6.7 60 107-171 30-89 (330)
277 2whl_A Beta-mannanase, baman5; 39.9 39 0.0013 29.0 5.3 51 101-174 35-85 (294)
278 3ecs_A Translation initiation 39.6 1.9E+02 0.0065 25.2 13.4 105 57-173 120-230 (315)
279 3ff4_A Uncharacterized protein 39.6 36 0.0012 25.0 4.2 41 126-174 72-112 (122)
280 3bh4_A Alpha-amylase; calcium, 39.3 17 0.0006 33.9 3.1 32 145-176 71-102 (483)
281 2f02_A Tagatose-6-phosphate ki 39.2 1.7E+02 0.0057 25.2 9.4 50 124-174 111-167 (323)
282 3jy6_A Transcriptional regulat 38.8 74 0.0025 26.5 6.9 57 108-172 35-92 (276)
283 1lwj_A 4-alpha-glucanotransfer 38.7 19 0.00066 33.2 3.3 72 94-175 20-92 (441)
284 1wpc_A Glucan 1,4-alpha-maltoh 38.5 18 0.00063 33.8 3.1 31 146-176 76-106 (485)
285 1ud2_A Amylase, alpha-amylase; 38.5 19 0.00064 33.7 3.1 30 147-176 75-104 (480)
286 3umo_A 6-phosphofructokinase i 38.2 1.9E+02 0.0064 24.6 10.1 50 124-174 113-168 (309)
287 1pq4_A Periplasmic binding pro 38.2 1.9E+02 0.0065 24.7 9.4 73 85-171 189-265 (291)
288 1zco_A 2-dehydro-3-deoxyphosph 38.1 51 0.0017 27.9 5.5 125 40-180 73-206 (262)
289 1hvx_A Alpha-amylase; hydrolas 38.0 19 0.00065 34.1 3.1 31 146-176 75-105 (515)
290 1mxg_A Alpha amylase; hyperthe 37.6 20 0.00067 33.1 3.1 31 146-176 80-110 (435)
291 1qyc_A Phenylcoumaran benzylic 36.5 1.9E+02 0.0066 24.3 9.6 55 108-171 55-110 (308)
292 2yvq_A Carbamoyl-phosphate syn 36.4 1.3E+02 0.0046 22.5 8.2 105 56-172 22-131 (143)
293 2vt1_B Surface presentation of 36.4 18 0.00063 25.1 2.0 20 155-174 29-48 (93)
294 3t7y_A YOP proteins translocat 36.2 17 0.00057 25.6 1.8 20 155-174 44-63 (97)
295 1ht6_A AMY1, alpha-amylase iso 36.1 21 0.00073 32.5 3.1 30 147-176 63-92 (405)
296 4aie_A Glucan 1,6-alpha-glucos 35.8 22 0.00076 33.7 3.3 29 148-176 75-103 (549)
297 3vc3_A Beta-cyanoalnine syntha 35.7 30 0.001 30.7 3.9 83 60-148 89-171 (344)
298 1gcy_A Glucan 1,4-alpha-maltot 35.1 23 0.00077 33.7 3.1 30 147-176 87-116 (527)
299 1jae_A Alpha-amylase; glycosid 34.9 19 0.00065 33.6 2.5 32 145-176 67-98 (471)
300 2r8w_A AGR_C_1641P; APC7498, d 34.6 2.1E+02 0.0071 25.1 9.1 87 86-174 103-197 (332)
301 2guy_A Alpha-amylase A; (beta- 34.5 25 0.00084 32.9 3.3 32 145-176 90-121 (478)
302 4du5_A PFKB; structural genomi 34.4 2.3E+02 0.0078 24.5 10.3 20 155-174 173-192 (336)
303 3c01_E Surface presentation of 34.4 19 0.00064 25.4 1.8 20 155-174 29-48 (98)
304 2dh2_A 4F2 cell-surface antige 34.3 24 0.00084 32.3 3.2 70 96-176 35-105 (424)
305 3c1o_A Eugenol synthase; pheny 34.2 2.2E+02 0.0074 24.2 10.0 55 108-171 55-110 (321)
306 2z1k_A (NEO)pullulanase; hydro 34.1 24 0.00082 32.9 3.1 72 96-176 49-120 (475)
307 2ab1_A Hypothetical protein; H 34.0 88 0.003 22.9 5.6 51 123-175 48-98 (122)
308 3nvt_A 3-deoxy-D-arabino-heptu 34.0 42 0.0014 30.3 4.6 57 124-180 260-325 (385)
309 3dhu_A Alpha-amylase; structur 33.9 23 0.00077 32.8 2.9 29 147-175 78-106 (449)
310 3pzt_A Endoglucanase; alpha/be 33.9 68 0.0023 28.1 5.9 21 154-174 106-126 (327)
311 3zq4_A Ribonuclease J 1, RNAse 33.8 1.2E+02 0.0041 28.9 8.0 79 84-167 322-408 (555)
312 1wza_A Alpha-amylase A; hydrol 33.8 25 0.00085 32.9 3.2 28 148-175 77-104 (488)
313 4e3a_A Sugar kinase protein; s 33.4 2.1E+02 0.0073 25.0 9.2 107 62-174 76-210 (352)
314 4ggi_A UDP-2,3-diacylglucosami 33.4 72 0.0025 27.4 5.8 55 112-170 215-275 (283)
315 2e8y_A AMYX protein, pullulana 33.3 18 0.00061 36.0 2.2 27 150-176 313-339 (718)
316 8abp_A L-arabinose-binding pro 33.0 1.1E+02 0.0039 25.7 7.2 57 109-171 31-87 (306)
317 1ua7_A Alpha-amylase; beta-alp 32.9 24 0.00084 32.3 2.9 81 94-176 14-98 (422)
318 2aaa_A Alpha-amylase; glycosid 32.9 26 0.0009 32.7 3.2 78 96-176 42-121 (484)
319 4a1f_A DNAB helicase, replicat 32.6 78 0.0027 28.0 6.0 20 85-104 73-92 (338)
320 3lkv_A Uncharacterized conserv 32.6 1.7E+02 0.0057 25.0 8.2 80 87-171 142-225 (302)
321 2rfg_A Dihydrodipicolinate syn 32.3 1.6E+02 0.0054 25.3 7.9 37 137-174 127-163 (297)
322 2wc7_A Alpha amylase, catalyti 32.3 25 0.00086 32.9 2.9 32 145-176 95-126 (488)
323 2ya0_A Putative alkaline amylo 32.3 22 0.00076 35.2 2.6 26 151-176 253-278 (714)
324 3o63_A Probable thiamine-phosp 32.1 50 0.0017 27.6 4.5 49 126-174 46-104 (243)
325 3tb6_A Arabinose metabolism tr 31.7 1E+02 0.0035 25.8 6.7 64 107-172 42-106 (298)
326 1qys_A TOP7; alpha-beta, novel 31.7 84 0.0029 20.6 4.4 30 344-374 46-75 (106)
327 3trj_A Phosphoheptose isomeras 31.6 1.9E+02 0.0067 22.9 9.8 43 126-172 105-147 (201)
328 2ioj_A Hypothetical protein AF 31.2 1.6E+02 0.0054 21.8 8.8 41 126-172 63-104 (139)
329 3kl4_A SRP54, signal recogniti 31.2 1.8E+02 0.0061 26.7 8.4 31 345-375 401-431 (433)
330 3ndz_A Endoglucanase D; cellot 31.1 57 0.0019 28.8 5.0 56 101-176 46-106 (345)
331 4exb_A Putative uncharacterize 31.1 2.5E+02 0.0084 24.0 8.9 81 87-176 152-239 (292)
332 3bk2_A RNAse J, metal dependen 31.0 1.7E+02 0.0058 27.8 8.6 79 84-167 337-423 (562)
333 1zja_A Trehalulose synthase; s 31.0 30 0.001 33.0 3.3 30 147-176 74-103 (557)
334 1m53_A Isomaltulose synthase; 30.8 29 0.00099 33.3 3.2 29 148-176 88-116 (570)
335 1j0a_A 1-aminocyclopropane-1-c 30.7 1.3E+02 0.0043 26.2 7.1 32 86-120 97-129 (325)
336 3l49_A ABC sugar (ribose) tran 30.7 74 0.0025 26.7 5.6 60 107-171 32-91 (291)
337 3ie7_A LIN2199 protein; phosph 30.6 2.5E+02 0.0087 23.9 10.2 51 124-175 115-172 (320)
338 3o2i_A Uncharacterized protein 30.5 79 0.0027 21.7 4.3 35 330-366 82-116 (125)
339 2jg1_A Tagatose-6-phosphate ki 30.5 2.3E+02 0.0078 24.5 8.9 39 135-174 146-185 (330)
340 3rot_A ABC sugar transporter, 30.0 93 0.0032 26.3 6.1 58 109-171 32-91 (297)
341 3bbl_A Regulatory protein of L 29.9 1.7E+02 0.0058 24.4 7.7 69 96-171 23-92 (287)
342 1j0h_A Neopullulanase; beta-al 29.9 32 0.0011 33.1 3.3 28 149-176 219-246 (588)
343 1ry2_A Acetyl-coenzyme A synth 29.9 3.2E+02 0.011 26.4 10.6 73 84-160 137-210 (663)
344 1wzl_A Alpha-amylase II; pullu 29.7 31 0.0011 33.2 3.2 29 148-176 215-243 (585)
345 3bc9_A AMYB, alpha amylase, ca 29.5 31 0.0011 33.3 3.1 29 147-175 203-231 (599)
346 1xky_A Dihydrodipicolinate syn 29.2 2.7E+02 0.0093 23.9 9.7 86 87-174 82-175 (301)
347 1wky_A Endo-beta-1,4-mannanase 29.2 71 0.0024 29.7 5.4 50 101-173 43-92 (464)
348 1uok_A Oligo-1,6-glucosidase; 29.0 32 0.0011 32.9 3.1 29 148-176 74-102 (558)
349 3v7e_A Ribosome-associated pro 28.9 83 0.0028 21.0 4.4 43 127-173 17-60 (82)
350 1xvl_A Mn transporter, MNTC pr 28.9 2.9E+02 0.0098 24.0 10.3 72 86-170 204-280 (321)
351 3nl6_A Thiamine biosynthetic b 28.7 47 0.0016 31.6 4.1 48 126-173 28-76 (540)
352 4fn4_A Short chain dehydrogena 28.6 1.5E+02 0.0053 24.7 7.0 68 60-134 8-76 (254)
353 1d3c_A Cyclodextrin glycosyltr 28.6 34 0.0012 33.7 3.3 31 145-175 108-138 (686)
354 2zic_A Dextran glucosidase; TI 28.5 32 0.0011 32.7 3.0 28 148-175 74-101 (543)
355 4aef_A Neopullulanase (alpha-a 28.4 33 0.0011 33.5 3.1 29 148-176 281-309 (645)
356 3edf_A FSPCMD, cyclomaltodextr 28.4 35 0.0012 32.9 3.3 29 148-176 194-222 (601)
357 2ze0_A Alpha-glucosidase; TIM 28.3 33 0.0011 32.7 3.1 73 95-176 29-102 (555)
358 1qho_A Alpha-amylase; glycosid 28.1 35 0.0012 33.6 3.3 78 96-176 51-131 (686)
359 3bmv_A Cyclomaltodextrin gluca 28.0 36 0.0012 33.5 3.3 31 145-175 109-139 (683)
360 1ea9_C Cyclomaltodextrinase; h 27.8 31 0.0011 33.2 2.8 28 149-176 215-242 (583)
361 1cyg_A Cyclodextrin glucanotra 27.6 36 0.0012 33.5 3.3 31 145-175 104-134 (680)
362 1tjy_A Sugar transport protein 27.6 1.2E+02 0.0042 25.9 6.5 58 109-171 32-90 (316)
363 3cx3_A Lipoprotein; zinc-bindi 27.6 1.3E+02 0.0043 25.7 6.4 73 85-170 176-253 (284)
364 3l78_A Regulatory protein SPX; 27.6 1.5E+02 0.0053 21.3 6.0 45 89-134 3-47 (120)
365 3tjr_A Short chain dehydrogena 27.3 2.8E+02 0.0097 23.5 10.3 77 61-145 34-117 (301)
366 1tk9_A Phosphoheptose isomeras 27.3 2.1E+02 0.0073 22.0 8.0 37 131-171 106-142 (188)
367 1vhx_A Putative holliday junct 27.3 97 0.0033 23.6 5.0 54 123-176 41-101 (150)
368 2dri_A D-ribose-binding protei 27.2 1.6E+02 0.0055 24.3 7.1 59 109-172 30-89 (271)
369 3icg_A Endoglucanase D; cellul 27.1 74 0.0025 30.0 5.2 62 100-176 48-109 (515)
370 2ioy_A Periplasmic sugar-bindi 27.1 1.4E+02 0.0047 24.9 6.7 58 109-171 30-87 (283)
371 2jep_A Xyloglucanase; family 5 27.0 73 0.0025 28.6 5.0 58 99-176 71-133 (395)
372 3aj7_A Oligo-1,6-glucosidase; 26.9 39 0.0013 32.5 3.3 29 148-176 83-111 (589)
373 3b1s_B Flagellar biosynthetic 32.8 14 0.00046 25.5 0.0 21 155-175 29-49 (87)
374 3vgf_A Malto-oligosyltrehalose 26.7 31 0.0011 33.0 2.5 32 145-176 160-191 (558)
375 1v77_A PH1877P, hypothetical p 26.6 52 0.0018 26.8 3.6 62 110-172 96-166 (212)
376 3vnd_A TSA, tryptophan synthas 26.4 2.7E+02 0.0091 23.5 8.1 83 87-172 125-212 (267)
377 2jg5_A Fructose 1-phosphate ki 26.4 2.9E+02 0.01 23.3 10.6 50 124-174 108-163 (306)
378 1vs1_A 3-deoxy-7-phosphoheptul 26.4 97 0.0033 26.4 5.3 122 40-179 88-220 (276)
379 2prs_A High-affinity zinc upta 26.4 1.7E+02 0.0057 24.9 6.9 74 85-171 173-251 (284)
380 3daq_A DHDPS, dihydrodipicolin 26.3 3E+02 0.01 23.4 8.7 86 87-174 72-165 (292)
381 2bhu_A Maltooligosyltrehalose 26.1 40 0.0014 32.6 3.2 30 147-176 187-216 (602)
382 3tqq_A Methionyl-tRNA formyltr 25.8 1.4E+02 0.0047 26.0 6.3 104 111-217 3-115 (314)
383 3tha_A Tryptophan synthase alp 25.8 2.5E+02 0.0087 23.4 7.7 82 87-171 118-204 (252)
384 3io5_A Recombination and repai 25.6 2.5E+02 0.0086 24.6 7.8 36 136-171 111-167 (333)
385 3r1i_A Short-chain type dehydr 25.4 3E+02 0.01 23.0 10.6 84 54-145 28-118 (276)
386 1t9k_A Probable methylthioribo 25.2 3.5E+02 0.012 23.8 11.8 82 85-174 181-269 (347)
387 1gjw_A Maltodextrin glycosyltr 25.2 37 0.0013 33.1 2.8 25 152-176 181-205 (637)
388 1ccw_A Protein (glutamate muta 25.2 1.6E+02 0.0055 21.8 5.9 63 105-173 26-92 (137)
389 2d59_A Hypothetical protein PH 25.1 76 0.0026 23.8 4.1 43 127-176 92-134 (144)
390 3faw_A Reticulocyte binding pr 25.0 35 0.0012 34.7 2.6 27 150-176 367-393 (877)
391 3egc_A Putative ribose operon 24.8 80 0.0027 26.5 4.7 58 107-171 35-92 (291)
392 3g1w_A Sugar ABC transporter; 24.8 1.3E+02 0.0045 25.3 6.1 58 109-171 33-91 (305)
393 3bul_A Methionine synthase; tr 24.8 4.4E+02 0.015 25.2 10.0 63 106-174 122-187 (579)
394 4aee_A Alpha amylase, catalyti 24.7 42 0.0014 33.1 3.1 29 148-176 307-335 (696)
395 2al1_A Enolase 1, 2-phospho-D- 24.7 1.9E+02 0.0063 26.6 7.2 82 86-172 289-372 (436)
396 2ya1_A Putative alkaline amylo 24.6 34 0.0012 35.4 2.5 26 151-176 560-585 (1014)
397 1m7x_A 1,4-alpha-glucan branch 24.6 43 0.0015 32.5 3.1 28 149-176 201-228 (617)
398 4h27_A L-serine dehydratase/L- 24.5 3E+02 0.01 24.3 8.5 53 60-118 95-147 (364)
399 3fkr_A L-2-keto-3-deoxyarabona 24.4 3.4E+02 0.012 23.3 11.8 50 123-174 119-174 (309)
400 3dwg_A Cysteine synthase B; su 24.3 1.5E+02 0.0051 25.8 6.4 54 60-119 75-128 (325)
401 7a3h_A Endoglucanase; hydrolas 24.3 1.3E+02 0.0045 25.8 6.0 21 155-175 82-102 (303)
402 1g5a_A Amylosucrase; glycosylt 24.3 44 0.0015 32.5 3.1 30 146-175 156-185 (628)
403 3sju_A Keto reductase; short-c 24.2 3.1E+02 0.011 22.8 10.4 79 60-145 25-110 (279)
404 1xrs_B D-lysine 5,6-aminomutas 24.1 3.2E+02 0.011 23.0 8.7 65 106-174 152-223 (262)
405 3o74_A Fructose transport syst 24.1 1.2E+02 0.0041 24.9 5.7 58 108-171 30-87 (272)
406 3rpc_A Possible metal-dependen 24.0 2.8E+02 0.0094 23.0 7.9 58 110-167 183-249 (264)
407 3h7a_A Short chain dehydrogena 24.0 3E+02 0.01 22.5 11.5 77 61-145 10-92 (252)
408 1ge9_A Ribosome recycling fact 24.0 1.5E+02 0.0051 23.5 5.6 38 334-372 88-125 (184)
409 3ia7_A CALG4; glycosysltransfe 24.0 3.5E+02 0.012 23.6 9.1 54 60-118 6-59 (402)
410 1wqg_A Ribosome recycling fact 24.0 1.5E+02 0.005 23.6 5.6 38 334-372 86-123 (185)
411 3m07_A Putative alpha amylase; 23.9 48 0.0016 32.2 3.3 31 146-176 196-226 (618)
412 1ise_A Ribosome recycling fact 23.8 1.6E+02 0.0056 23.3 5.8 37 335-372 87-123 (185)
413 3fz4_A Putative arsenate reduc 23.7 1.4E+02 0.0049 21.5 5.2 47 88-135 5-51 (120)
414 3dmy_A Protein FDRA; predicted 23.6 33 0.0011 32.1 1.9 70 96-174 24-94 (480)
415 3czg_A Sucrose hydrolase; (alp 23.5 44 0.0015 32.6 3.0 28 148-175 151-178 (644)
416 3gv0_A Transcriptional regulat 23.4 2.3E+02 0.0077 23.6 7.4 68 96-171 25-94 (288)
417 1is1_A Ribosome recycling fact 23.3 1.5E+02 0.0051 23.5 5.5 38 334-372 86-123 (185)
418 3q0i_A Methionyl-tRNA formyltr 23.2 1.1E+02 0.0039 26.6 5.3 104 111-217 8-120 (318)
419 2hmc_A AGR_L_411P, dihydrodipi 23.1 3.8E+02 0.013 23.5 9.2 87 86-175 92-189 (344)
420 3flu_A DHDPS, dihydrodipicolin 23.0 3.5E+02 0.012 23.0 9.4 86 87-174 77-170 (297)
421 3rdw_A Putative arsenate reduc 23.0 1.5E+02 0.0052 21.4 5.2 47 88-135 7-53 (121)
422 3pxx_A Carveol dehydrogenase; 22.9 3.3E+02 0.011 22.6 10.2 35 108-145 68-108 (287)
423 2ojp_A DHDPS, dihydrodipicolin 22.9 1.6E+02 0.0053 25.3 6.1 86 87-174 71-164 (292)
424 2xbl_A Phosphoheptose isomeras 22.8 2.7E+02 0.0092 21.6 8.5 39 129-171 110-148 (198)
425 2h0a_A TTHA0807, transcription 22.8 1.5E+02 0.0053 24.4 6.1 57 108-171 27-83 (276)
426 1dd5_A Ribosome recycling fact 22.8 1.5E+02 0.0051 23.5 5.3 37 335-372 87-123 (185)
427 2jli_A YSCU, YOP proteins tran 22.7 38 0.0013 24.9 1.8 21 155-175 73-93 (123)
428 4fgs_A Probable dehydrogenase 22.7 3.1E+02 0.011 23.1 7.8 64 60-133 30-94 (273)
429 3ju3_A Probable 2-oxoacid ferr 22.7 81 0.0028 22.8 3.6 44 101-144 30-73 (118)
430 1xx6_A Thymidine kinase; NESG, 22.7 1.2E+02 0.004 24.2 4.9 55 110-172 60-114 (191)
431 2xw6_A MGS, methylglyoxal synt 22.6 1E+02 0.0034 23.1 4.1 80 86-174 31-113 (134)
432 3aie_A Glucosyltransferase-SI; 22.6 50 0.0017 33.4 3.1 28 149-176 689-716 (844)
433 3dbi_A Sugar-binding transcrip 22.5 1.6E+02 0.0056 25.3 6.4 61 107-173 90-151 (338)
434 1iuk_A Hypothetical protein TT 22.4 44 0.0015 25.1 2.2 41 129-176 87-127 (140)
435 2lfh_A DNA-binding protein inh 22.4 22 0.00074 23.0 0.3 32 364-395 27-58 (68)
436 3si9_A DHDPS, dihydrodipicolin 22.2 3.5E+02 0.012 23.4 8.3 86 87-174 92-186 (315)
437 3kjx_A Transcriptional regulat 22.2 1.5E+02 0.0052 25.6 6.1 69 96-171 83-152 (344)
438 2rgy_A Transcriptional regulat 22.1 2.2E+02 0.0076 23.7 7.0 60 107-173 35-98 (290)
439 1wv2_A Thiazole moeity, thiazo 22.0 2.8E+02 0.0094 23.4 7.0 71 97-174 122-195 (265)
440 3tak_A DHDPS, dihydrodipicolin 22.0 1.6E+02 0.0054 25.2 5.9 37 137-174 128-164 (291)
441 1gud_A ALBP, D-allose-binding 21.9 2.5E+02 0.0085 23.4 7.3 58 109-171 30-89 (288)
442 3dfz_A SIRC, precorrin-2 dehyd 21.8 3.3E+02 0.011 22.2 9.3 90 56-169 29-118 (223)
443 3bzs_A ESCU; auto cleavage pro 21.8 41 0.0014 25.3 1.8 21 155-175 83-103 (137)
444 4ibo_A Gluconate dehydrogenase 21.7 3.5E+02 0.012 22.5 10.9 79 60-145 27-112 (271)
445 3lyl_A 3-oxoacyl-(acyl-carrier 21.7 3.2E+02 0.011 22.1 10.0 78 61-145 7-91 (247)
446 3nbm_A PTS system, lactose-spe 21.7 1.4E+02 0.005 21.1 4.7 58 134-196 4-61 (108)
447 1xp8_A RECA protein, recombina 21.7 4.2E+02 0.014 23.4 10.8 76 40-120 22-112 (366)
448 3bh0_A DNAB-like replicative h 21.7 3.3E+02 0.011 23.3 8.1 48 124-171 162-226 (315)
449 3zss_A Putative glucanohydrola 21.6 53 0.0018 32.4 3.1 28 149-176 317-344 (695)
450 3ucq_A Amylosucrase; thermosta 21.6 67 0.0023 31.4 3.8 70 97-175 111-183 (655)
451 3m6w_A RRNA methylase; rRNA me 21.5 4.7E+02 0.016 24.1 9.3 96 47-152 90-186 (464)
452 2fvy_A D-galactose-binding per 21.5 1.9E+02 0.0065 24.2 6.5 61 108-173 30-92 (309)
453 3tla_A MCCF; serine protease, 21.5 4.1E+02 0.014 23.7 8.7 71 84-154 41-127 (371)
454 3k9c_A Transcriptional regulat 21.5 1.3E+02 0.0043 25.3 5.3 56 107-171 38-93 (289)
455 3klk_A Glucansucrase; native f 21.5 53 0.0018 33.9 3.1 27 150-176 743-769 (1039)
456 1f2d_A 1-aminocyclopropane-1-c 21.4 2E+02 0.007 25.1 6.8 19 99-120 118-136 (341)
457 3h75_A Periplasmic sugar-bindi 21.4 2.2E+02 0.0075 24.6 7.0 57 109-171 33-91 (350)
458 3aml_A OS06G0726400 protein; s 21.3 55 0.0019 32.6 3.2 28 149-176 247-274 (755)
459 1wcw_A Uroporphyrinogen III sy 21.1 74 0.0025 26.5 3.6 60 85-146 7-69 (261)
460 3ttq_A Dextransucrase; (beta/a 20.9 55 0.0019 33.8 3.0 28 149-176 909-936 (1108)
461 2a0u_A Initiation factor 2B; S 20.9 4.5E+02 0.016 23.5 8.9 81 86-174 211-298 (383)
462 2fn9_A Ribose ABC transporter, 20.9 2.1E+02 0.0073 23.7 6.6 60 107-171 29-88 (290)
463 4af0_A Inosine-5'-monophosphat 20.8 45 0.0016 31.5 2.3 86 84-174 291-392 (556)
464 2uyg_A 3-dehydroquinate dehydr 20.7 1.7E+02 0.0057 22.2 4.9 58 108-170 39-96 (149)
465 3k1d_A 1,4-alpha-glucan-branch 20.7 58 0.002 32.2 3.1 28 149-176 309-336 (722)
466 1pjq_A CYSG, siroheme synthase 20.6 4.3E+02 0.015 24.2 9.0 91 60-174 14-106 (457)
467 3gkx_A Putative ARSC family re 20.6 1.8E+02 0.006 21.0 5.1 46 88-134 6-51 (120)
468 2wan_A Pullulanase; hydrolase, 20.5 52 0.0018 33.7 2.9 25 152-176 531-555 (921)
469 3ikh_A Carbohydrate kinase; tr 20.5 3.9E+02 0.013 22.5 11.1 124 61-195 34-184 (299)
470 2jlj_A YSCU, YOP proteins tran 20.4 45 0.0015 25.3 1.8 20 155-174 82-101 (144)
471 3ruf_A WBGU; rossmann fold, UD 20.4 4.1E+02 0.014 22.8 10.4 18 125-143 90-107 (351)
472 3tfo_A Putative 3-oxoacyl-(acy 20.3 3.7E+02 0.013 22.2 10.6 79 60-145 5-90 (264)
473 3ksm_A ABC-type sugar transpor 20.1 1.5E+02 0.0051 24.4 5.5 56 109-171 29-89 (276)
474 3m4x_A NOL1/NOP2/SUN family pr 20.1 5.1E+02 0.017 23.8 10.1 96 47-152 94-191 (456)
475 3guv_A Site-specific recombina 20.1 2.1E+02 0.0071 21.8 5.8 35 137-171 76-110 (167)
476 2fep_A Catabolite control prot 20.0 2.3E+02 0.0078 23.6 6.7 57 108-171 44-100 (289)
477 1yb1_A 17-beta-hydroxysteroid 20.0 3.7E+02 0.013 22.2 9.2 77 61-145 34-117 (272)
478 3qtp_A Enolase 1; glycolysis, 20.0 3.1E+02 0.011 25.1 7.6 81 87-172 296-379 (441)
No 1
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=3.8e-51 Score=389.05 Aligned_cols=396 Identities=66% Similarity=1.121 Sum_probs=342.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh--hccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 78 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l 78 (397)
||+++++++|+.+++++.+.+. ..+++|....+..++...+...+++++++++++++++++++++|+++|+.+++.++
T Consensus 26 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l 105 (423)
T 3lvm_A 26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGA 105 (423)
T ss_dssp CBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred ecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHH
Confidence 6889999999999999999988 66777766456667777889999999999999999889999999999999999988
Q ss_pred HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
...+.++||+|+++.++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|
T Consensus 106 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i 185 (423)
T 3lvm_A 106 ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAI 185 (423)
T ss_dssp HHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHH
T ss_pred HHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHH
Confidence 85444579999999999999998887776669999999999889999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
.++|++||++||+|++++.+..+.+...+++|++++|+||++|+.|+|+++++++....+.+...++.....+..++++.
T Consensus 186 ~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
T 3lvm_A 186 GEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265 (423)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCH
T ss_pred HHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcccccccCCCCCH
Confidence 99999999999999999988887777777899999999998888889999999888777777766665555677788898
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEeccc
Q psy8850 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318 (397)
Q Consensus 239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g 318 (397)
..+.++.++++.+.+.++++.+++.++++++.+.|++ ++++.+..++....+.++.+.+++.+..++...|..+.+.+|
T Consensus 266 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~v~~g 344 (423)
T 3lvm_A 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSG 344 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTTEECBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhhheeccC
Confidence 9999998899988777889999999999999999988 889998877655556778888877788888888888899999
Q ss_pred CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhccccccccccccC
Q psy8850 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397 (397)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (397)
..|.+....++..+..+|.......++|||+++..++++++++++++|+++++++++.+|.|.+.|++.|++++||+||
T Consensus 345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (423)
T 3lvm_A 345 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423 (423)
T ss_dssp CC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSCC------
T ss_pred ccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccCchhhhcC
Confidence 9998877777788888888766667999999998899999999999999999999999999999999999999999998
No 2
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=1.6e-47 Score=358.74 Aligned_cols=376 Identities=41% Similarity=0.767 Sum_probs=322.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++++++|+.+++++.+.+...+++|+. .+..++...+...+++++++++++++++++++++|+++|+.+++.++..
T Consensus 4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~ 82 (382)
T 4hvk_A 4 FDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred ecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhh
Confidence 799999999999999999999887788887 7777788889999999999999999888899999999999999998874
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
.+.++||+|+++.++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus 83 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~ 162 (382)
T 4hvk_A 83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISE 162 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHH
T ss_pred hhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHH
Confidence 34458899999999999999988887777999999999988899999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (397)
+|++||+ +|+|++|+.+..+.+....++|++++|+||++|+.|+|+++++++. .+.+...++.....+..++++...
T Consensus 163 l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 239 (382)
T 4hvk_A 163 VLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPS 239 (382)
T ss_dssp HHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred HHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHH
Confidence 9999999 9999999988877776666889999999998888889999999765 555566666556667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG 318 (397)
Q Consensus 241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g 318 (397)
+.++.+++++..++++++.+++.++++++.+.|++ ++++.+..++....++++.+.+++.+..++.+.|. ||.+.+|
T Consensus 240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 318 (382)
T 4hvk_A 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG 318 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeC
Confidence 99998999887778899999999999999999998 88998887655455567888888777888888886 9999999
Q ss_pred CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccch
Q psy8850 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWD 381 (397)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (397)
..|.+....++..+..+|.......++|||+++..++++++++++++|+++++++++.+|.|.
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4hvk_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp --------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 888776555666777888776555689999999989999999999999999999999988774
No 3
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=1.6e-46 Score=352.32 Aligned_cols=377 Identities=41% Similarity=0.764 Sum_probs=314.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++++++|+.|++++.+.+...++++.+ .|..+....+...++++++++++|++++++++|+|+++|+.+++.++..
T Consensus 4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~ 82 (382)
T 4eb5_A 4 FDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHh
Confidence 699999999999999999999876667765 5666666678899999999999999888999999999999999998863
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
.+.++||+|++++++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus 83 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~ 162 (382)
T 4eb5_A 83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISE 162 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHH
T ss_pred hccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHH
Confidence 33257899999999999998888776556999999999888889999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (397)
+|++||++ |+|++|+++..++++..++.|++++|+||++|+.|+|+++++++. .+.+...++.....+..++++...
T Consensus 163 l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~ 239 (382)
T 4eb5_A 163 VLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPS 239 (382)
T ss_dssp HHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred HHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCccHHH
Confidence 99999999 999999988766665555789999999998888889999998763 233333333333345567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG 318 (397)
Q Consensus 241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g 318 (397)
+.++.++++.+.++++++.+++.++++++.+.|++ ++++.+..++....+.++.+.+++.+..++.+.|. ||.+.+|
T Consensus 240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 318 (382)
T 4eb5_A 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG 318 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEecc
Confidence 88888899988778889999999999999999998 88888776543233557778887667778888776 9999999
Q ss_pred CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy8850 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDM 382 (397)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 382 (397)
..|.+....++..++.+|.......+++||+++..++++++++++++|+++++++++.++.|++
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 382 (382)
T 4eb5_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYRR 382 (382)
T ss_dssp CGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC--
T ss_pred ccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 8887755555667777776544456899999998889999999999999999999999998853
No 4
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=8.9e-44 Score=333.73 Aligned_cols=370 Identities=39% Similarity=0.627 Sum_probs=295.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++.+++|+.+++++.+.+...+.++.. .+..++...+...++++.+++++|++++++++++|+++|+.+++.++..
T Consensus 5 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 83 (384)
T 1eg5_A 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE 83 (384)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred EecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhh
Confidence 689999999999999999999876667766 6677777788999999999999999888999999999999999998862
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
...++||+|++++++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus 84 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~ 163 (384)
T 1eg5_A 84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTR 163 (384)
T ss_dssp HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred hccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHH
Confidence 11147899999999999998887655556999999999888889999999999999999999999999999999999999
Q ss_pred HHHhcC--cEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850 161 LCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (397)
Q Consensus 161 l~~~~g--i~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
+|++|| +++|+|++|+++..+.++..++.|++++|+||++|+.|+|+++++++. .+.+.+.++.....+..++.+.
T Consensus 164 l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 241 (384)
T 1eg5_A 164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV 241 (384)
T ss_dssp HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCH
T ss_pred HHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcccccccCCCCCh
Confidence 999999 999999999987766666666799999999998888789999998765 2233333322222345567788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS 316 (397)
Q Consensus 239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~ 316 (397)
..+.++.++++...++++++.+++.++++++.+.|++ +++.+..++....+.++.+.+++.+..++.+.|. ||.+.
T Consensus 242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~ 319 (384)
T 1eg5_A 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVS 319 (384)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEe
Confidence 8888888889887667889999999999999999998 6787776543334567788877667778887776 99999
Q ss_pred ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
+|..|.+....++..++.+|.......+++||+++..++++++++++++|+++++++++
T Consensus 320 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99877654444455666666653334589999999888999999999999999987754
No 5
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=2.2e-44 Score=339.86 Aligned_cols=368 Identities=40% Similarity=0.623 Sum_probs=295.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++++++|+.+++++.+.+...++++.. .+..++...+...+++++++++++++++++++++|+++|+.+++.++..
T Consensus 24 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~ 102 (400)
T 3vax_A 24 LDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAP 102 (400)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHH
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence 689999999999999999999877777776 6666777778899999999999999888999999999999999998863
Q ss_pred hhccCCC-EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850 81 FYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 81 ~~~~~g~-~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
...++|| +|+++.++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.
T Consensus 103 ~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~ 182 (400)
T 3vax_A 103 YGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELA 182 (400)
T ss_dssp HHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHH
T ss_pred hhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHH
Confidence 3335789 999999999999998888766799999999998899999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEE-EecCCC----CccccccccCCccccccCC
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY-IRRNPR----TRIEAQIHGGGHEYGLRSG 234 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~ 234 (397)
++|++||+++|+|++|+.+..+.++..+ +|++++|+||++|+.|+|+++ ++++.. ..+.+...++.....+..+
T Consensus 183 ~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (400)
T 3vax_A 183 QQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPG 261 (400)
T ss_dssp HHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCS
T ss_pred HHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCCceeeeecC
Confidence 9999999999999999988887777766 999999999988888899999 887322 2444555555555567788
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-Cc
Q psy8850 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-DI 313 (397)
Q Consensus 235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~i 313 (397)
+++...++++.++++.+.++++++.+++.++++++.+.|+ .+++.+..++....++++.+.+++.+..++.+.|. ||
T Consensus 262 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~gi 339 (400)
T 3vax_A 262 TLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA--STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLKDLV 339 (400)
T ss_dssp CCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT--TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC--CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhcCc
Confidence 8899999999899998877889999999999999999998 58888887655445567888888777777777775 88
Q ss_pred EecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHH
Q psy8850 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.+.+|..|.+....++..+..+|.......++|||++ +..++++++++++++|++++++
T Consensus 340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 340 AVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred EEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 8888887776555556677778877655569999999 8888999999999999988753
No 6
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=6.8e-42 Score=323.32 Aligned_cols=359 Identities=22% Similarity=0.328 Sum_probs=291.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~ 79 (397)
||+++.+++|+.+++++.+.+.....++++..+..++...+...++++.++++++. ++++|++++|+|+|+.+++.++.
T Consensus 27 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~ 106 (406)
T 1kmj_A 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG 106 (406)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred ecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhh
Confidence 67888888899999999999988666776544555666778899999999999999 67789999999999999999983
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
....++|++|+++.++|++....+..+. ..|.+++.+|.++++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus 107 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i 186 (406)
T 1kmj_A 107 NSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEM 186 (406)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHH
T ss_pred hhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHH
Confidence 1111789999999999998876544332 239999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~----------- 227 (397)
.++|++||+++|+|++|+.+..++++...++|++++|+||.+|+.|+|+++++++..+.+.+...++..
T Consensus 187 ~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (406)
T 1kmj_A 187 ITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT 266 (406)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEE
T ss_pred HHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccc
Confidence 999999999999999999887666655567999999999966888899999987766666554443321
Q ss_pred ----cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC
Q psy8850 228 ----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (397)
Q Consensus 228 ----~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (397)
...+..++++..+++++.++++.+.+ +++++.+++.++++++.+.|++ ++++.+..+. ..++++.+.+++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~~~~~~~~~~~~~~ 343 (406)
T 1kmj_A 267 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ--NRLGVIAFNLGKHH 343 (406)
T ss_dssp ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT--TCCSEEEEEETTCC
T ss_pred cCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC--CcCCEEEEEECCCC
Confidence 12355678888888888888888764 6888999999999999999999 8888887653 12556667776666
Q ss_pred hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
..++.+.|. ||.+.+|..|.+ ...+.+|. .+++||+++.+++++|+++++++|+++++.+
T Consensus 344 ~~~~~~~l~~~gi~v~~g~~~~~------~~~~~~g~-----~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 344 AYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNV-----PAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHHHTTEECEEECTTCH------HHHHHTTC-----SCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeccccch------HHHHhcCC-----CCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 777877775 999999876653 22223332 3889999999899999999999999998765
No 7
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=1e-40 Score=316.66 Aligned_cols=363 Identities=25% Similarity=0.357 Sum_probs=286.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~ 79 (397)
||++..+++|+.+++++.+.+.....++++..+.++....+...++++.++++++. +++++++++|+++|+.+++.++.
T Consensus 32 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~ 111 (420)
T 1t3i_A 32 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWG 111 (420)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred ecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhh
Confidence 57777788899999999999987666665423444444467889999999999999 67789999999999999999982
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
....++|++|+++.++|++....+..+. ..|.+++.+|.+.++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus 112 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i 191 (420)
T 1t3i_A 112 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEI 191 (420)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred hcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHH
Confidence 1111789999999999999644332221 229999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~----------- 227 (397)
.++|++||+++|+|++|+.+..++++..+++|++++|+||++|+.|+|+++++++..+.+.+...++..
T Consensus 192 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (420)
T 1t3i_A 192 AQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT 271 (420)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE
T ss_pred HHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccccCC
Confidence 999999999999999999887665666667999999999987887899999987765555554433321
Q ss_pred ---cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecCC
Q psy8850 228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFI 301 (397)
Q Consensus 228 ---~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 301 (397)
..++..++++..+.+++.++++.+.+ +++++.+++.++++++.+.|++ ++++.+..+... ..+.++.+.+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (420)
T 1t3i_A 272 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNVAGL 350 (420)
T ss_dssp CCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEETTB
T ss_pred CCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCCCccccccCCEEEEEECCC
Confidence 12345678888888888778887765 5788999999999999999999 788888765310 1245667777765
Q ss_pred ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
+..++.+.|. ||.+.+|..|.. .....+|. .+++||+++..++++++++++++|+++++++++
T Consensus 351 ~~~~~~~~l~~~gi~v~~~~~~~~------~~~~~~g~-----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 351 HASDVATMVDQDGIAIRSGHHCTQ------PLHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHHHHTTTEECBCSCTTCH------HHHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHCCeEEeeccccch------HHHHhcCC-----CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6777877775 899998876543 22222222 378999999889999999999999999887654
No 8
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6e-41 Score=316.99 Aligned_cols=353 Identities=17% Similarity=0.217 Sum_probs=284.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++++++|+.+++++.+.+.....++.. .+..+....+...++++.+++++|+++++|++++|+|+++.+++.++..
T Consensus 30 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~ 108 (406)
T 3cai_A 30 FDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSS 108 (406)
T ss_dssp CBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGG
T ss_pred EeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhh
Confidence 678888899999999999999876666654 5655556678899999999999999888999999999999999988721
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
. .++||+|+++.++|+++...+..+.. .|.+++.+|.+ +++.+|+++|++++++++++|++++++||||.+.|+++|
T Consensus 109 ~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i 187 (406)
T 3cai_A 109 R-AGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAM 187 (406)
T ss_dssp G-GBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHH
T ss_pred c-cCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHH
Confidence 1 16889999999999998887776433 38999999998 678899999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCce-EEEEecCCCCcccccc--ccCCccccccCCC
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQI--HGGGHEYGLRSGT 235 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 235 (397)
.++|+++|+++|+|++|+.+..++++..+++|++++|+||++||. +| +++++++....+.+.. +++....++..++
T Consensus 188 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t 266 (406)
T 3cai_A 188 TKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGV 266 (406)
T ss_dssp HHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSC
T ss_pred HHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcccCCCCCccccccCCC
Confidence 999999999999999999887766666668999999999987875 78 9998876555554432 1222223455778
Q ss_pred CchhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850 236 LATHQIVGMGEAFRLARI---------------EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (397)
Q Consensus 236 ~~~~~~~~l~~al~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
++...+.++.++++++.+ +++++.+++.++++++.+.|++ ++++.+..+.... ..++.+.+++
T Consensus 267 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~-~~~~~~~~~~ 344 (406)
T 3cai_A 267 HQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQ-IPVVSFAVHK 344 (406)
T ss_dssp CCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCCCSSB-CSEEEEEETT
T ss_pred ccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCcccc-CCEEEEEECC
Confidence 888888888888887764 4788899999999999999999 8888877654323 3367777776
Q ss_pred CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (397)
.+..++.+.|. ||.+.+|. . +..+..+|... ..+++||+++.+++++++++++++|++
T Consensus 345 ~~~~~~~~~L~~~gi~v~~g~--~------~~~~~~~g~~~--~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 345 VPADRVVQRLADNGILAIANT--G------SRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp BCHHHHHHHHHHTTEECEECC--S------CHHHHHHTTTT--TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHCCcEEecCC--h------HHHHHHcCCCC--CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 67778887775 89888875 1 13444555432 247899999998999999999999875
No 9
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=2.6e-40 Score=315.19 Aligned_cols=372 Identities=34% Similarity=0.540 Sum_probs=295.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++++++|+.+++++.+.+...+++|+. .|..+....+...++++++++++|+++++|++++|+++|+.+++.++..
T Consensus 22 Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 100 (432)
T 3a9z_A 22 MDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVR 100 (432)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred eeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHh
Confidence 688888899999999999999876677776 6666666778889999999999999888999999999999999998753
Q ss_pred hhc----cCCC-------------EEEEcCCCChhhHHHHHHHhh-CCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEE
Q psy8850 81 FYK----KRGK-------------HIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKN-NGLITLSQLEEKICSDTILVS 141 (397)
Q Consensus 81 ~~~----~~g~-------------~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~ 141 (397)
.+. ++|| +|+++..+|++...++..+.+ .|.+++.+|.++ ++.+|+++|++++++++++|+
T Consensus 101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~ 180 (432)
T 3a9z_A 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVT 180 (432)
T ss_dssp HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEE
T ss_pred hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEE
Confidence 211 2564 667777777777777766544 489999999985 778999999999999999999
Q ss_pred EecccCcccccccHHHHHHHHHhcC----------cEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEe
Q psy8850 142 VMLVNNEIGVIQPILEIGELCRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211 (397)
Q Consensus 142 ~~~~~~~tG~~~~l~~i~~l~~~~g----------i~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~ 211 (397)
+++++||||.+.|+++|.++|+++| +++|+|++|+.+..++++...++|++++|+||++|+. +|+++++
T Consensus 181 ~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~ 259 (432)
T 3a9z_A 181 IMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259 (432)
T ss_dssp CCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS-CEEEEET
T ss_pred EECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc-ceEEEEc
Confidence 9999999999999999999999999 9999999999887666665567899999999987876 8999999
Q ss_pred cCC-CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE--EEeCCC--
Q psy8850 212 RNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDM-- 286 (397)
Q Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~-- 286 (397)
++. ...+.+...++.....+..++++...+.++.++++.+.++++++.+++.++++++.+.|++ ++++ .+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~ 338 (432)
T 3a9z_A 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA-EFGKRIHLNSRFPG 338 (432)
T ss_dssp TBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGEEESSCCTT
T ss_pred cccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEeCCCCc
Confidence 775 4455555555544455667888888888888899988778889999999999999999988 5443 333331
Q ss_pred CCCCCceEEEEecCC--ChHHHHHHhCCcEecccCccCCCC-CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHH
Q psy8850 287 NNRIPHNLNISFNFI--EGESLLMAIKDIAVSSGSACTSAS-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 363 (397)
Q Consensus 287 ~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~ 363 (397)
....+.++.+.+++. +..++...+.++.+..|..|.++. ..+...+...|+......++|||+++.+++++|+++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~ 418 (432)
T 3a9z_A 339 VERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIV 418 (432)
T ss_dssp CCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHH
T ss_pred ccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHH
Confidence 123355777887752 466777777788888888776521 12234566667653334589999999989999999999
Q ss_pred HHHHHHHHHHHh
Q psy8850 364 KLLKMKVKKLRE 375 (397)
Q Consensus 364 ~~l~~~~~~~~~ 375 (397)
++|+++++++++
T Consensus 419 ~~l~~~~~~~~~ 430 (432)
T 3a9z_A 419 QDLKQAVNQLEG 430 (432)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC
Confidence 999999877653
No 10
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=302.95 Aligned_cols=340 Identities=14% Similarity=0.076 Sum_probs=274.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCC---cchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRN---HIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAI 75 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l 75 (397)
||.+++++.|++|++++.+.+..+++|+.+ . +..+..+.+.++++|+.+++++++++ .+|+| ++|+|+++++++
T Consensus 16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s-~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~ 94 (377)
T 3e77_A 16 ENLYFQSMLPHSVLLEIQKELLDYKGVGIS-VLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVP 94 (377)
T ss_dssp CCEECSCCCCHHHHHHHHHTSSSGGGSSSC-TTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHhcccCCcc-ccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHH
Confidence 688899999999999999999887777665 3 44566788999999999999999975 46888 589999999999
Q ss_pred HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccH
Q psy8850 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l 155 (397)
.++... ++||+|++...++.+. .....+.+.|..++.++.+.++..++++++.++++++++|.+++.+|.||++.|+
T Consensus 95 ~~l~~~--~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi 171 (377)
T 3e77_A 95 LNLIGL--KAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF 171 (377)
T ss_dssp HHHGGG--STTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS
T ss_pred HhccCC--CCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh
Confidence 998731 2389998888877775 3445555669888888887666678888888888999999999999999999998
Q ss_pred HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-----cccc
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HEYG 230 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----~~~~ 230 (397)
+|+++|+++++|+++++|..++|+..++ ++++|.||++||.|+|+++++++..+.+.+...... ....
T Consensus 172 -----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~ 244 (377)
T 3e77_A 172 -----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNS 244 (377)
T ss_dssp -----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTT
T ss_pred -----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcC
Confidence 4889999999999999999999998765 688999997799999999999998877654332211 1123
Q ss_pred ccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC-CCCCCCCceEEEEecCCCh----
Q psy8850 231 LRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIEG---- 303 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---- 303 (397)
.+.+|+++..++++.++++++.+ |++++.++..++.+++++.|++ ++++.+.. .+..+.+.++.|.+++.++
T Consensus 245 ~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~ 323 (377)
T 3e77_A 245 SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN-SQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL 323 (377)
T ss_dssp TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSEECCSCGGGBCSSEEEEEESSTTCCHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-cCCceecCCCHHHcCCcEEEEEcCCCCCchhH
Confidence 45789999999999999998865 6999999999999999999999 88887543 2233445668888887543
Q ss_pred -HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 304 -ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 304 -~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
..+...+. ||.+.+|... .+.+|+|+..++|.+|||+++++|++++++.
T Consensus 324 ~~~~l~~l~~~Gi~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 324 EKRFLDKALELNMLSLKGHRS---------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEeCCCCc---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 24555443 8887766311 2569999999999999999999999998763
No 11
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=5.5e-39 Score=297.61 Aligned_cols=330 Identities=12% Similarity=0.093 Sum_probs=266.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
+++++++++|+.+++++.+.+.. ..++...+...++++++++++|++++++++++|+++|+.+++.++.
T Consensus 4 l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~- 72 (352)
T 1iug_A 4 LLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF- 72 (352)
T ss_dssp ECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-
T ss_pred cccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-
Confidence 36788889999999998876532 1233456678899999999999987889999999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++||+|+++.++|+++. ....+...|.+++.+|.+.++.+|++++++ +++++|++++++||||.+.|+++|.+
T Consensus 73 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~ 145 (352)
T 1iug_A 73 ---APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALAR 145 (352)
T ss_dssp ---CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHH
T ss_pred ---CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHH
Confidence 78999999999999986 334444459999999998888889999887 67899999999999999999999999
Q ss_pred HHHhc--CcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc---------ccccCCcc
Q psy8850 161 LCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA---------QIHGGGHE 228 (397)
Q Consensus 161 l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~---------~~~~~~~~ 228 (397)
+|++| |+++|+|++|+++..++++..+++|++++|+|| ++|+.|+|+++++++..+.+.+ .... ..
T Consensus 146 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 223 (352)
T 1iug_A 146 AFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA--QK 223 (352)
T ss_dssp HHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH--HT
T ss_pred HHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh--cc
Confidence 99999 999999999998877766666678999999999 8888889999998765433221 0000 01
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL 307 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 307 (397)
.....++++...+.++.++++.+.+.++++.+++.++++++.+.|++ + ++.+..+. ..+.++++.++ +.+..++.
T Consensus 224 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 299 (352)
T 1iug_A 224 EGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-G-GLRPVPKR--FSPAVAAFYLPEGVPYARVK 299 (352)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS--BCTTCEEEECCTTCCHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccccc--cCCeEEEEEcCCCCCHHHHH
Confidence 13445678888888888888887656788999999999999999999 6 77776543 23567788876 45677888
Q ss_pred HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+.|. ||.+.+|..+ ...+++||+++..++++++++++++|+++++++
T Consensus 300 ~~l~~~gi~v~~~~~~-------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 300 EAFAQRGAVIAGGQGP-------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHHTTTEECEECCGG-------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEeCCCc-------------------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 8775 8888877421 123789999998889999999999999988655
No 12
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=7.5e-38 Score=294.06 Aligned_cols=338 Identities=19% Similarity=0.273 Sum_probs=272.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCCcchhhh-HHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQF-GNPASRNHIYGWT-AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 78 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l 78 (397)
||+++.+++|+.+++++.+.+.... .++.. +. .|. ..+...++++.+++++|+++++|++++|+++|+.+++.++
T Consensus 20 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~-~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~ 96 (390)
T 1elu_A 20 FNFGGQGILPTVALEAITAMYGYLQENGPFS--IA-ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGL 96 (390)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HH-HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHS
T ss_pred ecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hh-hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCC
Confidence 5778888889999999999887522 11111 11 122 2467889999999999998889999999999999999988
Q ss_pred -HhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850 79 -AHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 79 -~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
. ++|++|+++.++|+++...+..+ ...|.+++.+|.+ .++.+|++++++++++++++|++++++||||.+.|
T Consensus 97 ~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~ 172 (390)
T 1elu_A 97 DW----HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP 172 (390)
T ss_dssp CC----CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC
T ss_pred CC----CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecC
Confidence 5 78999999999999988765432 2238999999987 57789999999999999999999999999999999
Q ss_pred HHHHHHHHH----hcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc--
Q psy8850 155 ILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-- 227 (397)
Q Consensus 155 l~~i~~l~~----~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-- 227 (397)
+++|.++|+ +||+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|+++++++..+.+.+...++..
T Consensus 173 ~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~ 252 (390)
T 1elu_A 173 LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSIT 252 (390)
T ss_dssp HHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEE
T ss_pred HHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCccc
Confidence 999999999 99999999999998887777666689999999999 88888899999998877776655444321
Q ss_pred -------------cccccCCCCchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850 228 -------------EYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292 (397)
Q Consensus 228 -------------~~~~~~~~~~~~~~~~l~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 292 (397)
...+..++++...+.++.++++.+.+ + ++++.+++.++++++.+.|++ ++++.+..+. ...++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-~~~~~ 330 (390)
T 1elu_A 253 YGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATS-APQAG 330 (390)
T ss_dssp ECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSS-CCSSS
T ss_pred ccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEecCc-ccccc
Confidence 12445677888888888888887755 3 888999999999999999999 7888877542 12255
Q ss_pred eEEEEec-CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 293 NLNISFN-FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 293 ~~~~~~~-~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
++.+.++ +.+..++.+.|. ||.+.+|. ..+++||+++..++++++++++++|+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~----------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 331 LVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp EEEEEECSSSCHHHHHHHHHHTTEECEEET----------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCEEEEecC----------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 6677774 456777877776 88888763 1378999998889999999999998753
No 13
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=7.7e-39 Score=301.10 Aligned_cols=340 Identities=14% Similarity=0.107 Sum_probs=269.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++++++|+.+++++.+.+.. + .++...+...++++.+++++|++++++++|+|+|+|+.+++.++.
T Consensus 12 l~~~~~~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~- 80 (392)
T 2z9v_A 12 TLTAGPVNAYPEVLRGLGRTVLY---------D-YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI- 80 (392)
T ss_dssp ECSSSCCCCCHHHHHHTTSCCCC---------T-TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC-
T ss_pred eecCCCcCCCHHHHHHHhccccc---------c-ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc-
Confidence 57888899999999998765532 1 123456678899999999999988899999999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEecccCcccccccHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
++||+|+++.++|+++. ....+...|.+++.+|.+.++.+|++++++++. +++++|++++++||||.+.|+++|
T Consensus 81 ---~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i 156 (392)
T 2z9v_A 81 ---SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAI 156 (392)
T ss_dssp ---CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHH
T ss_pred ---CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHH
Confidence 78999999999998874 223323338999999998888899999999994 589999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc-------ccC-----
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI-------HGG----- 225 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~-------~~~----- 225 (397)
.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|+++++++..+.+.+.. .+.
T Consensus 157 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 236 (392)
T 2z9v_A 157 GALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWEN 236 (392)
T ss_dssp HHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTT
T ss_pred HHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHh
Confidence 9999999999999999998877766666678999999999 788888999999876554443311 110
Q ss_pred -CccccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEec-CC
Q psy8850 226 -GHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN-FI 301 (397)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 301 (397)
........++++...++++.++++.+.+. ++++.+++.++++++.+.|++ + ++.+..++. ...+.++++.++ +.
T Consensus 237 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 314 (392)
T 2z9v_A 237 AWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-M-GLSVWAASDSIASPTTTAVRTPDGV 314 (392)
T ss_dssp TTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCTTEEEEECCTTC
T ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCCccccCCceEEEECCCCC
Confidence 01123456778888888888899887665 888999999999999999998 6 766655221 223566777775 45
Q ss_pred ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
+..++.+.|. ||.+.+|..+. ..+++||++ +..++++++++++++|++++++++-.
T Consensus 315 ~~~~l~~~L~~~~gi~v~~g~~~~-------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 374 (392)
T 2z9v_A 315 DEKALRQAARARYGVVFSSGRGET-------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAGRK 374 (392)
T ss_dssp CHHHHHHHHHHHHCEECEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhcCCEEEecCCCCC-------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcCCC
Confidence 6777887774 88888775321 248899996 43689999999999999998877543
No 14
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=5.5e-39 Score=301.09 Aligned_cols=336 Identities=16% Similarity=0.205 Sum_probs=268.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCChhHHHHHHHHHhH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~i~~~~g~t~a~~~~l~~l~ 79 (397)
.++++.++++++++++.+.+.. ..++...+...++++++++++++++ +++++++|+++|+. ++.++.
T Consensus 6 ~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~ 74 (384)
T 3zrp_A 6 LHVGPTTIKEDVLVAGLENNVG----------FTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL 74 (384)
T ss_dssp CCSSCSCCCHHHHHHTTCCSCC----------TTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC
T ss_pred ccCCCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc
Confidence 4567788899999988765532 1233456788999999999999987 78999999999999 888776
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHH
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
++||+|+++++.|++.. ........|.+++.+|.+.++.+|++++++++++ ++++|++++++||||.+.|+++|
T Consensus 75 ----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 149 (384)
T 3zrp_A 75 ----KPNDKILVVSNGVFGDR-WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDV 149 (384)
T ss_dssp ----CTTCEEEEECSSHHHHH-HHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHH
T ss_pred ----CCCCEEEEecCCcchHH-HHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHH
Confidence 79999999999887742 1122234499999999998888999999999988 89999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc-ccccccC-----------
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI-EAQIHGG----------- 225 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~-~~~~~~~----------- 225 (397)
.++|++||+++|+|++|+.+..+.++...++|++++|+|| +.|+.|+|+++++++..+.+ .+.....
T Consensus 150 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (384)
T 3zrp_A 150 INKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPV 229 (384)
T ss_dssp HHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHH
T ss_pred HHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 9999999999999999999888877777789999999999 66788899999987765544 1100000
Q ss_pred Ccc----ccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec
Q psy8850 226 GHE----YGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN 299 (397)
Q Consensus 226 ~~~----~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 299 (397)
... .....++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..++ ....+.++++.++
T Consensus 230 ~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 307 (384)
T 3zrp_A 230 MRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVILK 307 (384)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEECS
T ss_pred HHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEECC
Confidence 000 1222357888888988889988765 4889999999999999999999 5 77666544 2223566678887
Q ss_pred CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
+.+..++.+.|. ||.+.+|..+.. +++||+++..++++++++++++|++++++++.
T Consensus 308 ~~~~~~~~~~l~~~gi~v~~g~~~~~--------------------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 308 VADPQKVLAGTVNEGVEFAPGVHPAF--------------------KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp SSCHHHHHHHHHTTTCCCEECCCTTC--------------------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHCCEEEecCCCCCc--------------------CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 767788888876 888887743221 78999999889999999999999999988754
No 15
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-38 Score=295.68 Aligned_cols=336 Identities=15% Similarity=0.196 Sum_probs=266.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~ 79 (397)
+|+++++++++.+.+++.+.+.. .+ +....+...++++.+++++|++ ++++++++|+++|+.+++.++.
T Consensus 23 l~~~~~~~~~~~v~~a~~~~~~~--------~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~ 92 (386)
T 2dr1_A 23 LFTAGPVACFPEVLEIMKVQMFS--------HR--SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV 92 (386)
T ss_dssp ECCSSSCCCCHHHHHHTTSCCCC--------TT--SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS
T ss_pred eecCCCcCCcHHHHHHHhccccc--------cc--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh
Confidence 47888889999999887665432 11 2234678889999999999997 6679999999999999999886
Q ss_pred hhhccCCCEEEEcCCCChh--hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh--cCCceEEEEecccCcccccccH
Q psy8850 80 HFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~~~tG~~~~l 155 (397)
++||+|++++++|++ +...+... |.+++.++.+.++.+|+++|++++ .+++++|++++++||||.+.|+
T Consensus 93 ----~~gd~vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 165 (386)
T 2dr1_A 93 ----SKGGKVLVTIIGAFGKRYKEVVESN---GRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPL 165 (386)
T ss_dssp ----CTTCEEEEEESSHHHHHHHHHHHHT---TCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred ----cCCCeEEEEcCCchhHHHHHHHHHh---CCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCH
Confidence 789999999999998 55444444 999999999888889999999999 5689999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc-ccCC-------
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI-HGGG------- 226 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~-~~~~------- 226 (397)
++|.++|++||+++|+|++|+.+..+.++..+++|++++|+|| +.++.|+|+++++++..+.+.+.. .++.
T Consensus 166 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (386)
T 2dr1_A 166 PELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYV 245 (386)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHH
T ss_pred HHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHH
Confidence 9999999999999999999998877666666688999999999 555657899999876544442210 0000
Q ss_pred --cc-ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850 227 --HE-YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (397)
Q Consensus 227 --~~-~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (397)
.. .....++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..++....+.++++.++ +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 323 (386)
T 2dr1_A 246 KYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I-GLDILAEPGHESPTITAVLTPPG 323 (386)
T ss_dssp HHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCTTCBCSSEEEEECCTT
T ss_pred HhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCeeCcCccccCCceEEEEcCCC
Confidence 00 1234557777888888889988765 3888999999999999999998 5 766655432223567777776 4
Q ss_pred CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
.+..++.+.|. ||.+.+|..+. ..+++||+++.+++++++++++++|++++++++
T Consensus 324 ~~~~~~~~~l~~~gi~v~~~~~~~-------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 324 IKGDEVYEAMRKRGFELAKGYGSV-------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CCHHHHHHHHHHTTEECEECCGGG-------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 56777887776 89888875321 237899999988899999999999999987763
No 16
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=1.5e-38 Score=299.29 Aligned_cols=339 Identities=17% Similarity=0.213 Sum_probs=268.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++.++.++|+.+++++.+.+.. .+ .....+...++++++++++|++++ ++++++|+++|+.+++.++.
T Consensus 23 ~~~g~~~~~~~v~~a~~~~~~~--------~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~- 91 (393)
T 2huf_A 23 MGPGPSNAPQRVLDAMSRPILG--------HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL- 91 (393)
T ss_dssp CSSSCCCCCHHHHHHTTSCCCC--------TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-
T ss_pred ecCCCCCCCHHHHHHHHhhhcc--------CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-
Confidence 5667778899999987765432 11 234467889999999999999875 79999999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++||+|+++.++|+++. ....+...|.+++.+|.+.++.+|++++++++++ ++++|++++++||||.+.|+++|.
T Consensus 92 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 167 (393)
T 2huf_A 92 ---EDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVG 167 (393)
T ss_dssp ---CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---CCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHH
Confidence 78999999999998853 2233344599999999988888999999999988 899999999999999999999999
Q ss_pred HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc-------c---------
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------I--------- 222 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~-------~--------- 222 (397)
++|++||+++|+|++++++..+.++..+++|++++|+|| ++|+.|.|+++++++..+.+... .
T Consensus 168 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
T 2huf_A 168 ALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDY 247 (393)
T ss_dssp HHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred HHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhh
Confidence 999999999999999998877777666689999999999 68888899999987655443322 1
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (397)
.++....++..++++...++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..++....+.++.+.++ +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 2huf_A 248 WGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVTTIKVPQG 325 (393)
T ss_dssp TTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEEEEECCTT
T ss_pred hccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEEEEEcCCC
Confidence 1111123456678888999988889988765 5888999999999999999998 5 766654432223457777775 4
Q ss_pred CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
.+..++.+.|. ||.+.+|..+. ..+++||++ +..++++++++++++|+++++++++.
T Consensus 326 ~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~ 386 (393)
T 2huf_A 326 VDWLKAAQYAMKTYLVEISGGLGPT-------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD 386 (393)
T ss_dssp CCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHhCCEEEecCcccc-------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 56778887773 89888775331 137899999 54457999999999999999887654
No 17
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=1e-39 Score=302.96 Aligned_cols=337 Identities=12% Similarity=0.064 Sum_probs=251.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCC--CcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHHH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIK 76 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l~ 76 (397)
||++++++.|++|++++.+++...++||.+. .+..+..+.+.++++|+.++++++++. .+|+| |+|+|+++++++.
T Consensus 30 l~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~ 109 (386)
T 3qm2_A 30 NFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPL 109 (386)
T ss_dssp ECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence 5899999999999999999888777777651 122355667889999999999999964 46888 6999999999999
Q ss_pred HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCC-CCHHHHHHHhcCCceEEEEecccCccccc-
Q psy8850 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGL-ITLSQLEEKICSDTILVSVMLVNNEIGVI- 152 (397)
Q Consensus 77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~-~d~~~l~~~i~~~~~~v~~~~~~~~tG~~- 152 (397)
++. ++||+|++...++.+.. ....+.+.| +++.++.+ +.|. +++++++++++++|++|.+++.+|.+|++
T Consensus 110 ~l~----~~gd~v~~~~~~~~~~~-~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i 183 (386)
T 3qm2_A 110 NLL----GDKTTADYVDAGYWAAS-AIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAI 183 (386)
T ss_dssp HHC----TTCCEEEEEESSHHHHH-HHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEEC
T ss_pred hcc----CCCCeEEEEeCCHHHHH-HHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEec
Confidence 987 68898876666666653 334445558 89999988 6675 78889999999999999999999999996
Q ss_pred ccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccC-----Cc
Q psy8850 153 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG-----GH 227 (397)
Q Consensus 153 ~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~-----~~ 227 (397)
.|+++|. +|+++++|++|++|..++|+..++ ++++|.||++||.|+|+++++++..+.+.+..... ..
T Consensus 184 ~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~ 256 (386)
T 3qm2_A 184 DETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLN 256 (386)
T ss_dssp CCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHH
T ss_pred Cchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHh
Confidence 8898885 799999999999999999998765 67899999779999999999998877665432211 12
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CCh
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 303 (397)
..+.+.+|+|+..++++.++++++.+ +++++.++..++++++++.|++ ++-+....++..+.+.++.|.+++ .+
T Consensus 257 ~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~iv~f~~~~~~~~- 334 (386)
T 3qm2_A 257 DNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDN-SDFYRNDVAQANRSRMNVPFQLADNTLD- 334 (386)
T ss_dssp HC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT-CSSEECCBCGGGBCSSEEEEEESSGGGH-
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCHHHcCceEEEEECCCcccc-
Confidence 23456789999999999999999866 5999999999999999999998 532222223333446788888874 33
Q ss_pred HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.++...|. ||.+..|..+. +.+|+|+..++|.+|||+++++|+++.++.
T Consensus 335 ~~~~~~L~~~gI~~~~g~~~~---------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 335 KVFLEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeCCCCCc---------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 56666565 88887764332 459999999999999999999999988653
No 18
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=9.7e-38 Score=295.40 Aligned_cols=335 Identities=18% Similarity=0.246 Sum_probs=268.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhh
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~ 81 (397)
..++.++++.+++++.+.+. .+ ..+...+...+++++++++++.+.++ +++++|+++|+.+++.++.
T Consensus 18 ~pgp~~~~~~v~~a~~~~~~---------~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-- 85 (411)
T 3nnk_A 18 GPGPINADPRVLRAMSSQLI---------GQ-YDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-- 85 (411)
T ss_dssp SSSCCCCCHHHHHHHTSCCC---------CT-TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--
T ss_pred cCCCCCCCHHHHHHhhcccc---------cc-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--
Confidence 45666778888888765331 11 12344577889999999999998665 8899999999999999886
Q ss_pred hccCCCEEEEcCCCChh--hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHH
Q psy8850 82 YKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
++||+|+++.++|++ +...+... |.+++.+|.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|
T Consensus 86 --~~gd~Vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 160 (411)
T 3nnk_A 86 --RPGDKVLVPVFGRFGHLLCEIARRC---RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAEL 160 (411)
T ss_dssp --CTTCEEEEEECSHHHHHHHHHHHHT---TCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred --CCCCEEEEecCCchHHHHHHHHHHc---CCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHH
Confidence 799999999999987 54444444 99999999988888999999999987 89999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc------cccCCc----
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ------IHGGGH---- 227 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~------~~~~~~---- 227 (397)
.++|++||+++|+|++++.+..+++....++|++++|+|| ++|+.|+|+++++++..+.+... +.++..
T Consensus 161 ~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~ 240 (411)
T 3nnk_A 161 GEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGD 240 (411)
T ss_dssp HHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCS
T ss_pred HHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccccccc
Confidence 9999999999999999999888888877789999999999 68888999999987755444322 111110
Q ss_pred -------------------cccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC
Q psy8850 228 -------------------EYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN 287 (397)
Q Consensus 228 -------------------~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 287 (397)
..++..++++...+.++.++++...+. ++++.+++.++++++.+.|++ + ++.+..++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~ 318 (411)
T 3nnk_A 241 EEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA-M-GLETFGDLK 318 (411)
T ss_dssp SCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBCSCGG
T ss_pred CCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCEeCCCcc
Confidence 223556788889999998999887664 889999999999999999998 4 776665544
Q ss_pred CCCCceEEEEec-CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHH
Q psy8850 288 NRIPHNLNISFN-FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFT 362 (397)
Q Consensus 288 ~~~~~~~~~~~~-~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~ 362 (397)
...+.++.+.++ +.+..++.+.|. ||.+.+|... ..++++||++ +..+++++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~-------------------~~~~~iRi~~~~~~~~~~~i~~~ 379 (411)
T 3nnk_A 319 HKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGP-------------------LHGKVWRIGTMGYNARKDCVMTT 379 (411)
T ss_dssp GBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGG-------------------GTTTEEEEECCGGGCSHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCC-------------------CCCCEEEEeCccCcCCHHHHHHH
Confidence 344667788875 557778887763 8888876311 1247999998 666789999999
Q ss_pred HHHHHHHHHHHHh
Q psy8850 363 IKLLKMKVKKLRE 375 (397)
Q Consensus 363 ~~~l~~~~~~~~~ 375 (397)
+++|+++++++..
T Consensus 380 ~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 380 LSALEAVLNYLKF 392 (411)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987754
No 19
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=1.4e-37 Score=288.06 Aligned_cols=331 Identities=16% Similarity=0.164 Sum_probs=261.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~ 79 (397)
.+++++++|+.+++++.+.+.. + .++...+...++++++++++|.+ ++++++|+|+++|+.+++.++.
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG---------H-LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC---------T-TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc---------c-cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence 5678889999999998776532 1 12344567899999999999985 6679999999999999999886
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHH
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
+ |+|+++.++|+++ .....+...|.+++.+|.++++.+|++++++++++ ++++|++++++||||.+.|+++|
T Consensus 74 ----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 146 (353)
T 2yrr_A 74 ----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAI 146 (353)
T ss_dssp ----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred ----C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHH
Confidence 4 7899999999987 32333344599999999988888999999999988 89999999999999999999999
Q ss_pred HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC---------Ccc
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG---------GHE 228 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~---------~~~ 228 (397)
.++|++||+++|+|++|+++..+.++..+++|++++|+|| ++|+.|+|+++++++..+.+.. ..+. ...
T Consensus 147 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 225 (353)
T 2yrr_A 147 GALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVAEHWE 225 (353)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHhhhhh
Confidence 9999999999999999998776666555578999999999 7787889999999875544431 0000 000
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESL 306 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 306 (397)
.....++++...+.++.++++.+.+. ++++.+++.++++++.+.|++ + ++.+..++ ...+.++++.++ +.+..++
T Consensus 226 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 302 (353)
T 2yrr_A 226 RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKA-SPLPTVLVVRPPEGVDADRL 302 (353)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS-SBCTTEEEEECCTTCCHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCc-cCCCeEEEEECCCCCCHHHH
Confidence 12345677888888888888887554 888999999999999999998 6 77776532 123556677775 4567788
Q ss_pred HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH-HHHHHHHHHHHH
Q psy8850 307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID-FTIKLLKMKVKK 372 (397)
Q Consensus 307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~-~~~~~l~~~~~~ 372 (397)
.+.|. ||.+.+|..+.. ++++|+++....++++++ +++++|++++++
T Consensus 303 ~~~l~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 303 VRALYAEGVAVAGGIGPTR-------------------GQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHHHHHTTEECEECCGGGT-------------------TTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCEEEeCCccccC-------------------CCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 87776 899888753321 378999997777899999 999999988753
No 20
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1.2e-37 Score=290.75 Aligned_cols=341 Identities=14% Similarity=0.169 Sum_probs=258.5
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHhhccCC-CCCCCcchhhhHHHHHHHHHHH-HHHHhCCCCCcEEEeCChhHHHHHHHHH
Q psy8850 1 MDY-SATTPIDPRVVDKMIPYLRVQFGN-PASRNHIYGWTAEKAIEKARNE-VAQLIYADPREIIWTSGATESNNLAIKG 77 (397)
Q Consensus 1 ~~~-~~~~~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~i~~~~g~t~a~~~~l~~ 77 (397)
||+ ++.+++++.+++++.+.+...... ..+ .+..++...+...++++. ++++++.+ ++++++|+|+|+.+++.+
T Consensus 12 ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~ 88 (371)
T 2e7j_A 12 IDPLQTGGKLTEEARQALLEWGDGYSVCDFCT-TGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHS 88 (371)
T ss_dssp CCHHHHTCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHH
T ss_pred ecccccCCCCCHHHHHHHHHHHhhcccCCccc-cccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHH
Confidence 355 446788999999999887652210 000 122334445678899999 99999988 899999999999999999
Q ss_pred hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEec--cCCCCCCCHHHHHHHhc-----CCceEEEEecccCccc
Q psy8850 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK--PKNNGLITLSQLEEKIC-----SDTILVSVMLVNNEIG 150 (397)
Q Consensus 78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~--~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~~~tG 150 (397)
+. ++|++|+++.++|+++...+... |.+++.+| .++++.+|+++|+++++ +++++|++++++||||
T Consensus 89 ~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG 161 (371)
T 2e7j_A 89 LA----KKDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG 161 (371)
T ss_dssp HC----CTTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred Hh----CCCCEEEEccCcchHHHHHHHHc---CCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCc
Confidence 86 78999999999999999886665 99999999 77778899999999998 7899999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCc-cccccccCCcc
Q psy8850 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIHGGGHE 228 (397)
Q Consensus 151 ~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~-~~~~~~~~~~~ 228 (397)
.+.|+++|.++|++||+++|+|++|+.+..+.++..+++|++++|+|| +.++.++|+++++++..+. +.+...++...
T Consensus 162 ~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
T 2e7j_A 162 NLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKE 241 (371)
T ss_dssp CCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSB
T ss_pred ccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccc
Confidence 999999999999999999999999998877666655678999999999 6776688999999887776 66544332222
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI--LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (397)
..++.++++..+++++.++++.+.+ ++.+++ .++++++.+.|++ + ++.+..+... .++++++.++ +..++
T Consensus 242 ~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~-~~~~~~~~~~--~~~~~ 313 (371)
T 2e7j_A 242 VELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPH-NHDLMFFHAE--VLYEI 313 (371)
T ss_dssp GGGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSC-CSSEEEEECH--HHHHH
T ss_pred cccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCc-cCceEEEECC--CHHHH
Confidence 2233677788888888788887654 667777 8999999999998 5 8877765321 2457777776 56677
Q ss_pred HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE-EeeCCC-CCHHHHHHHHHHHHHHHHHH
Q psy8850 307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR-FTIGRF-TTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR-i~~~~~-~~~~~i~~~~~~l~~~~~~~ 373 (397)
.+.|. ||.+.+ ..+.. ...|. ..+++| ++++.. ++++++++++++|+++++++
T Consensus 314 ~~~l~~~gi~~~~-~~~~~---------~~~g~----~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 314 SKKAKGGRFFLYR-ELKSR---------KIHGI----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHSSSGGGHHHH-HHHHT---------TEECS----CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCEEEEe-ccccc---------cccCC----CCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 77776 666654 11100 00011 147899 999987 89999999999999988653
No 21
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=1.3e-37 Score=299.30 Aligned_cols=347 Identities=15% Similarity=0.147 Sum_probs=268.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~ 79 (397)
||+++.++.|+.+.+++.+.+..+...... .+..+ ........++++++++++|+++++|++++|+|+++++++.++.
T Consensus 71 ld~~~~g~~p~~v~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~ 149 (465)
T 3e9k_A 71 FLGNSLGLQPKMVKTYLEEELDKWAKIAAY-GHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF 149 (465)
T ss_dssp CBTTTSCCEETTHHHHHHHHHHHHHHHGGG-GGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHC
T ss_pred ecCCccCCChHHHHHHHHHHHHHHHhhCCc-ccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhc
Confidence 678888888888988888777542211110 11111 1122345678999999999998899999999999999999886
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE-----EEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCccc
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV-----TYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIG 150 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v-----~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG 150 (397)
... .++++|+++.++|++....+.. +...|.++ ..+|.+.++.+|+++++++++ +++++|++++++||||
T Consensus 150 ~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG 228 (465)
T 3e9k_A 150 KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTG 228 (465)
T ss_dssp CCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTC
T ss_pred ccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcc
Confidence 211 2345699999999998876664 33347663 455667778899999999996 6899999999999999
Q ss_pred ccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccccc--CCCCceEEEEecCCCCccccccccCC--
Q psy8850 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGGG-- 226 (397)
Q Consensus 151 ~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~--g~~g~g~~~~~~~~~~~~~~~~~~~~-- 226 (397)
.+.|+++|.++|++||+++|+|++|+.|..++++..+++|++++|+||++ ||.|+|+++++++....+.+...+|.
T Consensus 229 ~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~ 308 (465)
T 3e9k_A 229 QHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGH 308 (465)
T ss_dssp BBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGB
T ss_pred eeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCC
Confidence 99999999999999999999999999999988888889999999999944 67778999999887776665544421
Q ss_pred ----------------ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc---------CcE
Q psy8850 227 ----------------HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESI---------EEI 280 (397)
Q Consensus 227 ----------------~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~---------~~~ 280 (397)
...+++.|+++...++++.++++.+.+ +++++.++..++++++.+.|++.+ +++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 388 (465)
T 3e9k_A 309 ELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVV 388 (465)
T ss_dssp CHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CE
T ss_pred CCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCe
Confidence 123456779999999999999998876 489999999999999999999822 788
Q ss_pred EEeCCCC-CCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCH
Q psy8850 281 YINGDMN-NRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTE 356 (397)
Q Consensus 281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~ 356 (397)
.+..+.. ...+.++.+.++ .+..++.+.|. ||.+..+ .+++|||++ +.+++.
T Consensus 389 ~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~-----------------------~~~~iRis~~~~~~t~ 444 (465)
T 3e9k_A 389 NIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCDKR-----------------------NPNGIRVAPVPLYNSF 444 (465)
T ss_dssp EECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECEEE-----------------------TTTEEEEBCCTTTCCH
T ss_pred EEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEecC-----------------------CCCEEEEeCcccCCCH
Confidence 8887542 122456677776 44556766665 7766521 138999998 788999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8850 357 KEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 357 ~~i~~~~~~l~~~~~~~ 373 (397)
+||++++++|++++++.
T Consensus 445 edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 445 HDVYKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988654
No 22
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=3e-37 Score=292.55 Aligned_cols=311 Identities=18% Similarity=0.239 Sum_probs=253.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCcEE-EeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChh--hHHHHHHHhhCCcEE
Q psy8850 37 WTAEKAIEKARNEVAQLIYADPREII-WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRV 113 (397)
Q Consensus 37 ~~~~~~~~~~~~~la~~~~~~~~~i~-~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v 113 (397)
+...+...+++++++++++.++++++ +++|+++|+.+++.++. ++||+|+++.++|++ +...+.. .|.++
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~~---~g~~~ 112 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI----EPEDDVLIPIYGRFGYLLTEIAER---YGANV 112 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHHHHHHHHH---TTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----CCCCEEEEecCCcccHHHHHHHHh---cCCee
Confidence 44567889999999999999877665 89999999999999886 799999999999988 3333333 39999
Q ss_pred EEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEE
Q psy8850 114 TYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (397)
Q Consensus 114 ~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~ 192 (397)
+.+|.+.++.+|+++++++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+..+.+...+++|++
T Consensus 113 ~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~ 192 (416)
T 3isl_A 113 HMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAA 192 (416)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred EEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEE
Confidence 999999888999999999998 5899999999999999999999999999999999999999999888888877789999
Q ss_pred Eecccc-ccCCCCceEEEEecCCCCcccccc---------------ccC----------------CccccccCCCCchhH
Q psy8850 193 SFSAHK-IYGPKGIGALYIRRNPRTRIEAQI---------------HGG----------------GHEYGLRSGTLATHQ 240 (397)
Q Consensus 193 ~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~---------------~~~----------------~~~~~~~~~~~~~~~ 240 (397)
++|+|| ++|+.|+|+++++++..+.+.+.. .++ .....+..++++...
T Consensus 193 ~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (416)
T 3isl_A 193 IGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTM 272 (416)
T ss_dssp ECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHH
T ss_pred EecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHH
Confidence 999999 788889999999877654443211 000 012345677888899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHhC---CcEe
Q psy8850 241 IVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAIK---DIAV 315 (397)
Q Consensus 241 ~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~---~i~~ 315 (397)
+.++.++++...+. ++++.+++.++++++.+.|++ + ++.+..++....+.++.+.++ +.+..++.+.|. ||.+
T Consensus 273 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v 350 (416)
T 3isl_A 273 LYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA-M-GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEI 350 (416)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEE
Confidence 99998999987765 899999999999999999999 4 777665544344567778875 567788888774 8888
Q ss_pred cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH-HHHHHHHHHHHHHHHHh
Q psy8850 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE-IDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~-i~~~~~~l~~~~~~~~~ 375 (397)
.+|... ..++++||++..+.+.++ +++++++|+++++++..
T Consensus 351 ~~g~~~-------------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 392 (416)
T 3isl_A 351 ASSFGP-------------------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNA 392 (416)
T ss_dssp BCCCST-------------------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCC-------------------CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 877421 124899999966656666 99999999999987643
No 23
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=4.9e-37 Score=288.94 Aligned_cols=332 Identities=15% Similarity=0.207 Sum_probs=262.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~ 79 (397)
+|+++++++++++++++.+.+.. . ++....+...++++.+++++|++++ ++++|+|+++|+.+++.++.
T Consensus 37 l~~~~~~~~~~~v~~a~~~~~~~--------~--~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~ 106 (393)
T 1vjo_A 37 LLGPGPSNAHPSVLQAMNVSPVG--------H--LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV 106 (393)
T ss_dssp ECSSSCCCCCHHHHHHHSSCCCC--------T--TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred eccCCCCCCCHHHHHHHhccccc--------c--cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc
Confidence 46788888999999998775532 1 1223457888999999999999888 89999999999999999886
Q ss_pred hhhccCCCEEEEcCCCChh--hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHH
Q psy8850 80 HFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL 156 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~ 156 (397)
++|++|+++.++|++ +...+... |.+++.+|.+.++.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus 107 ----~~gd~Vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~ 179 (393)
T 1vjo_A 107 ----EPGDVVLIGVAGYFGNRLVDMAGRY---GADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLE 179 (393)
T ss_dssp ----CTTCEEEEEESSHHHHHHHHHHHHT---TCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred ----CCCCEEEEEcCChhHHHHHHHHHHc---CCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHH
Confidence 789999999999998 65555544 99999999988888999999999988 899999999999999999999
Q ss_pred HHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc---cccCCc-----
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ---IHGGGH----- 227 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~---~~~~~~----- 227 (397)
+|.++|+++|+++|+|++|+++..++++...++|++++|+|| +.++.|+|+++++++..+.+... ..+...
T Consensus 180 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
T 1vjo_A 180 GVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLL 259 (393)
T ss_dssp THHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred HHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhh
Confidence 999999999999999999998877777777788999999999 66676789999987654443211 111100
Q ss_pred -----cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850 228 -----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (397)
Q Consensus 228 -----~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (397)
...+..++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+.....+.++.+.++ +
T Consensus 260 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 337 (393)
T 1vjo_A 260 GKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-I-GLSLHVEKEYRLPTLTTVCIPDG 337 (393)
T ss_dssp HHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCTT
T ss_pred hhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCccccCCcEEEEEcCCC
Confidence 01223347788888888889988644 5888999999999999999998 5 766655432223456677775 4
Q ss_pred CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~ 370 (397)
.+..++.+.|. ||.+.+|..+.. .+++||++ +..++++++++++++|++++
T Consensus 338 ~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 338 VDGKAVARRLLNEHNIEVGGGLGELA-------------------GKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCEEEecCccccC-------------------CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 56777877774 899988864321 38899995 44467888999999999875
No 24
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=7.3e-37 Score=288.03 Aligned_cols=337 Identities=16% Similarity=0.205 Sum_probs=260.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++.++.++++.+++++.+.+.. .+ .+.......++++.++++++.+++ ++++++|+++|+.+++.++.
T Consensus 22 ~~~~p~~~~~~v~~a~~~~~~~--------~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~- 90 (396)
T 2ch1_A 22 MGPGPSNCSKRVLTAMTNTVLS--------NF--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL- 90 (396)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCC--------TT--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-
T ss_pred ecCCCCCCCHHHHHHhcccccc--------CC--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-
Confidence 4556667788888887654321 11 223345688999999999999887 79999999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++||+|+++.++|+++.. ...+...|.+++.++.+.++.+|++++++++++ ++++|++++++||||.+.|+++|.
T Consensus 91 ---~~gd~vl~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 166 (396)
T 2ch1_A 91 ---EEGDRVLIAVNGIWAERA-VEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVG 166 (396)
T ss_dssp ---CTTCEEEEEESSHHHHHH-HHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---CCCCeEEEEcCCcccHHH-HHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHH
Confidence 789999999999999741 122333499999999988888999999999988 899999999999999999999999
Q ss_pred HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc-------ccc-------
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------IHG------- 224 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~-------~~~------- 224 (397)
++|++||+++|+|++|+++..++++..+++|++++|+|| ++++.|+|+++++++....+... ..+
T Consensus 167 ~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (396)
T 2ch1_A 167 QICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNY 246 (396)
T ss_dssp HHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred HHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHh
Confidence 999999999999999998887777777788999999999 77788899999987544333211 111
Q ss_pred C--CccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEec-
Q psy8850 225 G--GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN- 299 (397)
Q Consensus 225 ~--~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~- 299 (397)
+ .....+..++++...+.++.++++.+. ++++++.+++.++++++.+.|++ + ++.+..+.. ...+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 324 (396)
T 2ch1_A 247 WGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-M-GLDIFVKDPRHRLPTVTGIMIPK 324 (396)
T ss_dssp TTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-H-TCCBSSCSGGGBCTTEEEEECCT
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCeeccCCccccCCceEEEEcCC
Confidence 0 001234556788888888888888764 45888999999999999999998 5 766665433 123446777775
Q ss_pred CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 300 FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 300 ~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
+.+..++.+.|. ||.+.+|..+. ..+++||++ +..++++++++++++|++++++++
T Consensus 325 ~~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 325 GVDWWKVSQYAMNNFSLEVQGGLGPT-------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp TCCHHHHHHHHHHHHCBCCBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCEEEecCcccc-------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 456778887773 88887764221 237899999 555689999999999999987664
No 25
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=6.6e-37 Score=287.84 Aligned_cols=338 Identities=16% Similarity=0.216 Sum_probs=263.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++.++.++++++++++.+.... + ..+...+...+++++++++++.+.+ ++++++|+++|+.++++++.
T Consensus 27 ~~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~- 95 (393)
T 3kgw_A 27 LGPGPSNLAPRVLAAGSLRMIG---------H-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL- 95 (393)
T ss_dssp CSSSCCCCCHHHHHHTTCCCCC---------T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-
T ss_pred ccCCCCCCCHHHHHHhcccccC---------c-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-
Confidence 4566777888888887653211 1 1233456788999999999998755 49999999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++||+|+++.+.|.+.. ....+...|.+++.+|.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|.
T Consensus 96 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 171 (393)
T 3kgw_A 96 ---EPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFG 171 (393)
T ss_dssp ---CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---CCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHH
Confidence 79999999988775432 1222333499999999988888999999999998 999999999999999999999999
Q ss_pred HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc----------------
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI---------------- 222 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~---------------- 222 (397)
++|++||+++|+|++|+.+..+++....++|++++|+|| ++|+.|+|+++++++..+.+....
T Consensus 172 ~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
T 3kgw_A 172 ELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKL 251 (393)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHH
T ss_pred HHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHh
Confidence 999999999999999998887777777789999999999 778888999999877554443221
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec-
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN- 299 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~- 299 (397)
.++....++..++++...++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+. ....+.++++.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 3kgw_A 252 WGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-M-GLKFFVKDPEIRLPTITTVTVPA 329 (393)
T ss_dssp TTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCSSEEEEECCT
T ss_pred hhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcCCeEEEEeCCC
Confidence 1111223455678888888888888887755 4889999999999999999999 5 66655322 2233456667775
Q ss_pred CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 300 FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 300 ~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
+.+..++.+.|. ||.+.+|..+. .++++||++ +..++++++++++++|+++++++++
T Consensus 330 ~~~~~~~~~~l~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 330 GYNWRDIVSYVLDHFSIEISGGLGPT-------------------EERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp TBCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHhCCEEEeCCcccC-------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 456778887774 88888875322 247999998 6556999999999999999987653
No 26
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=4.3e-37 Score=282.79 Aligned_cols=332 Identities=12% Similarity=0.039 Sum_probs=256.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCc---chhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNH---IYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIK 76 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l~ 76 (397)
-+++++++|++|++++.+.+...++|+.+ .+ ..+..+.+.++++|+.++++++++. .+|+| |+|+|+++++++.
T Consensus 9 f~pgpt~~~~~V~~a~~~~~~~~~~~~~s-~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~ 87 (361)
T 3m5u_A 9 FSAGPSTLPLEILEQAQKELCDYQGRGYS-IMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPM 87 (361)
T ss_dssp CCSSSCCCCHHHHHHHHHTSSSGGGSSSC-GGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ecCCCCCCcHHHHHHHHHHHHhcccCCce-eeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHH
Confidence 36789999999999999999877777765 32 2355778899999999999999964 47888 9999999999999
Q ss_pred HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCC--CCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL--ITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~--~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
++. +++++++....+.+. .....+.+.|.+++.++.+.++. +++++ + +++++++|.+++.+|.+|++.|
T Consensus 88 ~~~-----~~~~~~~i~~~~~~~-~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~~~ 158 (361)
T 3m5u_A 88 NLA-----LNGVCEYANTGVWTK-KAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSNNTIYGTQYQ 158 (361)
T ss_dssp HHC-----CSSCEEEEECSHHHH-HHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESEETTTTEECS
T ss_pred hcC-----CCCeEEEEeCCHHHH-HHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCCCCCcceeCC
Confidence 876 345442212223333 23344455699999999998774 56666 4 8889999999999999999877
Q ss_pred HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCcccc----ccccCC--cc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA----QIHGGG--HE 228 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~----~~~~~~--~~ 228 (397)
. +++ +|+++++|+++++|..++|+. ..|++++|.||++||.|+|+++++++..+.+.+ .+.++. ..
T Consensus 159 ~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~ 230 (361)
T 3m5u_A 159 N-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAE 230 (361)
T ss_dssp S-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHH
T ss_pred c-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHhh
Confidence 2 344 499999999999999999998 479999999997799999999999877655433 221111 12
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecCC-C-h
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNFI-E-G 303 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~ 303 (397)
...+.+|+|+..++++.++++++.+ |++++.++..++++++++.|++ ++++ .+..++..+.+.++.|.+++. . .
T Consensus 231 ~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~ 309 (361)
T 3m5u_A 231 NQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIAKNKDLE 309 (361)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEESSCTTHH
T ss_pred cCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECCCchhhh
Confidence 3456689999999999999999876 5999999999999999999999 7765 554443344467888888751 1 2
Q ss_pred HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.++...|. ||.+..|... .+.+|+|+..++|.+|||+++++|+++.++.
T Consensus 310 ~~~~~~L~~~gI~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 310 PLFVKEAEEAGMIGLKGHRI---------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp HHHHHHHHHTTEECCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEecCCCc---------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence 45666665 8888766421 1559999999999999999999999988763
No 27
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=8.8e-36 Score=282.49 Aligned_cols=347 Identities=14% Similarity=0.155 Sum_probs=262.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||+++.+++|+.+++++.+.+...++++.. .........+...++++.+++++|+++++|++++|+++++.+++.++..
T Consensus 32 ld~~~~~~~~~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~ 110 (416)
T 1qz9_A 32 LDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR 110 (416)
T ss_dssp CCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH
T ss_pred ecCCCcCCCcHHHHHHHHHHHHHHHhccCc-cccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcc
Confidence 688888899999999999998764443321 0011111235778899999999999888999999999999988887652
Q ss_pred hh--ccCCCE-EEEcCCCChhhHHHHHHHhh-C--CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850 81 FY--KKRGKH-IITVQTEHKSVLDSIRKLEN-D--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 81 ~~--~~~g~~-vl~~~~~~~s~~~~~~~~~~-~--g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
.. .++||+ |+++.++|+++..++..+.. . |.+++.+|. +++|++++++++++|++++++||||.+.|
T Consensus 111 ~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~~~~nptG~~~~ 183 (416)
T 1qz9_A 111 VQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLTHVNYKTGYMHD 183 (416)
T ss_dssp HHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEESBCTTTCBBCC
T ss_pred cccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCceEEEEeccccCcccccC
Confidence 10 035665 67777899988877655433 2 889998886 78999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCc-eEEEEecCCCCccccccccCC-c----
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGI-GALYIRRNPRTRIEAQIHGGG-H---- 227 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~-g~~~~~~~~~~~~~~~~~~~~-~---- 227 (397)
+++|.++|++||+++|+|++|+.|..+.++..+++|++++|+|| ++++.|+ |+++++++..+.+.+...++. .
T Consensus 184 l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~ 263 (416)
T 1qz9_A 184 MQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQF 263 (416)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTS
T ss_pred HHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCcccccc
Confidence 99999999999999999999998877666555578999999999 5566677 999999887776665433310 0
Q ss_pred -----------cccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcC--cEEEeCCCCC-CCCc
Q psy8850 228 -----------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNN-RIPH 292 (397)
Q Consensus 228 -----------~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~-~~~~ 292 (397)
...+..++++...++++.++++.+. ++++++.+++.++++++.+.|++.++ ++.+..+... ..++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~ 343 (416)
T 1qz9_A 264 AMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS 343 (416)
T ss_dssp CCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS
T ss_pred CCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCC
Confidence 1245667888888888888998875 46888999999999999999988325 7777655321 1245
Q ss_pred eEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHH
Q psy8850 293 NLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 369 (397)
++++.+++ ..++.+.|. ||.+... ..+++||+++ ..++++++++++++|+++
T Consensus 344 ~~~~~~~~--~~~l~~~l~~~gi~~~~~-----------------------~~~~lRis~~~~~~t~~~i~~~~~~l~~~ 398 (416)
T 1qz9_A 344 HVSFEHPE--GYAVIQALIDRGVIGDYR-----------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEI 398 (416)
T ss_dssp EEEEECTT--HHHHHHHHHTTTEECEEE-----------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEecCC--HHHHHHHHHhCCcEeccC-----------------------CCCeEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 66666653 667777765 6654311 2388999998 478999999999999999
Q ss_pred HHHHHhcCccc
Q psy8850 370 VKKLRELSPLW 380 (397)
Q Consensus 370 ~~~~~~~~~~~ 380 (397)
+++..-+.|.+
T Consensus 399 ~~~~~~~~~~~ 409 (416)
T 1qz9_A 399 LDRKTWAQAQF 409 (416)
T ss_dssp HHHTTTC----
T ss_pred Hhccccccccc
Confidence 98766566665
No 28
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1e-35 Score=276.62 Aligned_cols=333 Identities=14% Similarity=0.118 Sum_probs=259.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++.++.++|+++++++.+.+..... . .....+...+...++++.+++++|.+ ++++++++|+++|+.+++.++.
T Consensus 8 ~~p~p~~~~~~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~- 82 (362)
T 3ffr_A 8 FTPGPSELYPTVRQHMITALDEKIG---V-ISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV- 82 (362)
T ss_dssp ECSSSCCCCTTHHHHHHHHHHTTTT---T-SCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-
T ss_pred ccCCCcCCCHHHHHHHHHHhcCCcc---C-cCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-
Confidence 4567778899999999888765210 0 11223455678899999999999985 5679999999999999999987
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++ .+++..+.|++. .....+...|.+++.++.+.++.+|+++++ +++++++|++++++||||.+.|+++|.+
T Consensus 83 ---~~--~~i~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~ 154 (362)
T 3ffr_A 83 ---EK--KSFHCVNGSFSK-RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINT 154 (362)
T ss_dssp ---SS--EEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTT
T ss_pred ---CC--cEEEEcCcHHHH-HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHH
Confidence 55 444444444442 222333445999999999888889999999 7889999999999999999999999999
Q ss_pred HHHhc-CcEEEEecccccCccccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCcc----------
Q psy8850 161 LCRSK-GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHE---------- 228 (397)
Q Consensus 161 l~~~~-gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~---------- 228 (397)
+|++| |+++|+|++|+.+..+.+... .|++++|+||+++ +.|+|+++++++....+.+...|++..
T Consensus 155 la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 232 (362)
T 3ffr_A 155 FRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSML 232 (362)
T ss_dssp SGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHH
T ss_pred HHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHH
Confidence 99999 999999999998887766653 8999999999554 888999999987666555443322110
Q ss_pred ----ccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEecCCC
Q psy8850 229 ----YGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFNFIE 302 (397)
Q Consensus 229 ----~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 302 (397)
.....++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ ++++.+..+. ......++++.+++ +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~ 310 (362)
T 3ffr_A 233 EKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMTTIVANTTM-L 310 (362)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSSEEEEEESS-C
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCceEEEecCC-C
Confidence 1222677888888888888887654 4889999999999999999998 8899887632 22335677778876 7
Q ss_pred hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
..++.+.|. ||.+.+|..+. .+++|||+++..++++++++++++|++++
T Consensus 311 ~~~~~~~l~~~gi~~~~g~~~~-------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 311 PGEINKILEPFDMAVGAGYGSK-------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHGGGTEEEEECSGGG-------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 788888887 89998874332 23889999999899999999999998764
No 29
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=2.3e-36 Score=281.29 Aligned_cols=330 Identities=14% Similarity=0.148 Sum_probs=252.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCC--CcEEEeCChhHHHHHHHHHhH
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~--~~i~~~~g~t~a~~~~l~~l~ 79 (397)
+.++.++|+++++++.+.+ .+..+ ... +...++++.++++++.+. +++++++|+++|+.+++.++.
T Consensus 9 ~~gp~~~~~~v~~a~~~~~----------~~~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~ 77 (366)
T 1m32_A 9 TPGPLTTSRTVKEAMLFDS----------CTWDD-DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL 77 (366)
T ss_dssp SSSSCCCCHHHHHTTCCCC----------CTTSH-HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC
T ss_pred cCCCcCCCHHHHHHHhhhh----------cCCCH-HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc
Confidence 3445567899999887632 11111 122 567889999999999432 369999999999999999987
Q ss_pred hhhccCCCEEEEcC-CCChhh-HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--CceEEEEecccCcccccccH
Q psy8850 80 HFYKKRGKHIITVQ-TEHKSV-LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 80 ~~~~~~g~~vl~~~-~~~~s~-~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l 155 (397)
++|++|++.. ++|++. ....... |.+++.+|.+.++.+|++++++++++ ++++|++++++||||.+.|+
T Consensus 78 ----~~gd~vi~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 150 (366)
T 1m32_A 78 ----GPQDKVLIVSNGAYGARMVEMAGLM---GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI 150 (366)
T ss_dssp ----CTTCCEEEEESSHHHHHHHHHHHHH---TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred ----CCCCeEEEEeCCCccHHHHHHHHHh---CCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCH
Confidence 6888876654 666653 3333444 89999999988888999999999986 58899999999999999999
Q ss_pred HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc-------
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH------- 227 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~------- 227 (397)
++|.++|++||+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|+++++++..+.+.....+...
T Consensus 151 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 1m32_A 151 DEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWR 230 (366)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHh
Confidence 9999999999999999999998877777666679999999999 67888899999998765555432111000
Q ss_pred ----cccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--
Q psy8850 228 ----EYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-- 299 (397)
Q Consensus 228 ----~~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (397)
......++++...++++.++++.+.+. ++++.+++.++++++.+.|++ + ++.+..++....+.++++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (366)
T 1m32_A 231 CMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYSPED 308 (366)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCCC
T ss_pred hhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEcCcc
Confidence 001223567788888888899887654 788999999999999999998 5 665554321223457778876
Q ss_pred -CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 300 -FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 300 -~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.+..++.+.|. ||.+.+|..|.. +++|++++..++++++++++++|++++++
T Consensus 309 ~~~~~~~~~~~l~~~gi~v~~~~~~~~--------------------~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 309 PQYRFSEFYRRLKEQGFVIYPGKVSQS--------------------DCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp TTCCHHHHHHHHHHTTEECEECCCSSS--------------------CEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHCCEEEECCcCCCC--------------------CEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 456778887776 899888765432 88999999988999999999999987643
No 30
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.3e-35 Score=275.04 Aligned_cols=326 Identities=17% Similarity=0.130 Sum_probs=250.3
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh----
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---- 81 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~---- 81 (397)
.+++++.+.+++.+++.....++. ..+...+...+++++++++++++++++++++|+++|+.+++.++...
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~ 113 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPG-----LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREK 113 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGG-----GBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcc-----cChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhh
Confidence 456778999999998876443322 11245677888999999999999889999999999999999988742
Q ss_pred -----hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850 82 -----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 82 -----~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l 155 (397)
...+||+|+++.++|+++...+... |.+++.+|.++++.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus 114 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 190 (397)
T 3f9t_A 114 RRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNI 190 (397)
T ss_dssp HHTTCCCCSSCEEEEETTCCTHHHHHHHHH---TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCH
T ss_pred hhhcccCCCCeEEEECCcchhHHHHHHHHc---CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCH
Confidence 1124899999999999999988887 99999999998899999999999998 99999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEecccccCcc--------------ccccCcccccEEEecccc-ccCCCCceEEEEecCCCC-cc-
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKI--------------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-RI- 218 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~--------------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~-~~- 218 (397)
++|.++|++||+++|+|++|+.+.. ++++.. ++|++++|+|| +.++.++|+++++++... .+
T Consensus 191 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~ 269 (397)
T 3f9t_A 191 EELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLD 269 (397)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTC
T ss_pred HHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhc
Confidence 9999999999999999999985433 334444 78999999999 546667899998765332 22
Q ss_pred --ccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEE
Q psy8850 219 --EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (397)
Q Consensus 219 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (397)
.+...++. .....++.+.....++.+++..+. .+++++.+++.++++++.+.|++ + ++.+..++. .+++.
T Consensus 270 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~ 342 (397)
T 3f9t_A 270 VDAPYLTETR--QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEPI---LNIVA 342 (397)
T ss_dssp EECTTSSSSE--ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCCS---SSEEE
T ss_pred cCCccccCCC--ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCCC---ccEEE
Confidence 22221111 111123333345556666666553 35788899999999999999999 5 766554432 45656
Q ss_pred EEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 296 ISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 296 ~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
+.++. ..++.+.|. ||.+.++.. ++++||+++..++++++++++++|+++++
T Consensus 343 ~~~~~--~~~~~~~l~~~gi~v~~~~~----------------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 343 IEDED--YKEVCKKLRDRGIYVSVCNC----------------------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EECTT--HHHHHHHHHHTTCBCEECSS----------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEeCC--HHHHHHHHHhCCeEEeccCC----------------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 66543 567777765 788776531 28999999988999999999999998764
No 31
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=3e-35 Score=275.01 Aligned_cols=331 Identities=14% Similarity=0.118 Sum_probs=253.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChhHHHHHHHHHhHh
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~-i~~~~g~t~a~~~~l~~l~~ 80 (397)
++++.++|+++++++.+.+.. +. .....+...++++++++++|++++ + +++++|+++|++++++++.
T Consensus 24 ~pgp~~~~~~v~~a~~~~~~~---------~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~- 92 (376)
T 3f0h_A 24 TVGPVMSSEEVRAIGAEQVPY---------FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF- 92 (376)
T ss_dssp SSSSCCCCHHHHHHHTSCCCC---------CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-
T ss_pred cCCCCCCcHHHHHHhcCCCCC---------CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-
Confidence 456677899999988765421 11 234456788999999999999753 4 5558999999999999887
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++||+|++..+.|++.. ........|.++..++.+.++.+|++++++++++++++|++++++||||.+.|+++|.+
T Consensus 93 ---~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~ 168 (376)
T 3f0h_A 93 ---TKKDKVLVIDGGSFGHR-FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGE 168 (376)
T ss_dssp ---CTTCCEEEEESSHHHHH-HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHH
T ss_pred ---CCCCeEEEEeCChhhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHH
Confidence 78999999988777643 22344445999999999888889999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC-c---------cc
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-H---------EY 229 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~-~---------~~ 229 (397)
+|++||+++|+|++++.+..++++..+++|++++|+|| +.|+.|+|+++++++....+.+...... . ..
T Consensus 169 l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (376)
T 3f0h_A 169 FCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQER 248 (376)
T ss_dssp HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTT
T ss_pred HHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhccc
Confidence 99999999999999998887777666678999999999 5548889999998776554433211110 0 00
Q ss_pred cccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHH
Q psy8850 230 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL 307 (397)
Q Consensus 230 ~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (397)
.....+++...++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+. ....++.+..++.+..++.
T Consensus 249 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 324 (376)
T 3f0h_A 249 GQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSES--PANGVTSVHPTTANAYDIF 324 (376)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSS--BBTTEEEEEESSSCHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCccc--cCceEEEEeCCCCCHHHHH
Confidence 122345666666788888887765 4888999999999999999998 5 56665432 1234444555556777887
Q ss_pred HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
+.|. ||.+.+|.. ...++++||+++..++++++++++++|+++++
T Consensus 325 ~~l~~~~gi~v~~g~~-------------------~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 325 LKLKDEYGIWICPNGG-------------------EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp HHHHHHSSEECEECCG-------------------GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEecCcc-------------------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 7775 788887621 11248899999988999999999999999875
No 32
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=100.00 E-value=8.1e-35 Score=270.78 Aligned_cols=335 Identities=11% Similarity=0.069 Sum_probs=246.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCC--CCcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChhHHHHHHHH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPAS--RNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIK 76 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~-i~~~~g~t~a~~~~l~ 76 (397)
+|+++++++|+.+++++.+.+....+++.+ .....++...+..+++++.+++++|++++ + +++|+|+++|+.+++.
T Consensus 7 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~ 86 (362)
T 2c0r_A 7 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPM 86 (362)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHH
Confidence 478899999999999999988653222111 01112334556788999999999999864 5 5678999999999999
Q ss_pred HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC---CC-CCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NG-LITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~---~~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
++. ++||+|++..+.|.+... ...+...| +++.++.+. .+ .+|.++++ ++++|++|++++++||||.+
T Consensus 87 ~l~----~~gd~vl~~~~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~ 158 (362)
T 2c0r_A 87 NFL----KEGQTANYVMTGSWASKA-LKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQ 158 (362)
T ss_dssp HHC----CTTCEEEEEECSHHHHHH-HHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTTTEE
T ss_pred hcC----CCCCeEEEEecCcHhHHH-HHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCcccee
Confidence 987 789999887766555321 12222238 999998762 22 35666654 67889999999999999996
Q ss_pred -ccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-----
Q psy8850 153 -QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG----- 226 (397)
Q Consensus 153 -~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~----- 226 (397)
.|+++| +|+++++|++|+.+..++++.. .|++++|+||++|+.|+|+++++++..+.+.+......
T Consensus 159 ~~~l~~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~ 230 (362)
T 2c0r_A 159 FKAFPDT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTY 230 (362)
T ss_dssp CSSCCCC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHH
T ss_pred ccccccc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHHH
Confidence 667776 8999999999999887776654 48999999997788899999999887766643211000
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecC-CC
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IE 302 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 302 (397)
.......++++...++++.++++.+.+ +++++.+++.++++++.+.|++ ++++ .+..++....+..+++.++. .+
T Consensus 231 ~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (362)
T 2c0r_A 231 VKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRLASEEL 309 (362)
T ss_dssp HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSSEESSCGGGBCSSEEEEECSCHHH
T ss_pred hhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-cCCccccCCChHHcCCcEEEEEcCCcch
Confidence 011233568888888999999998766 6899999999999999999998 6535 66443222224556666653 34
Q ss_pred hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
..++.+.|. ||.+.+|..+ .+.||||++.+++.+++++++++|+++++++
T Consensus 310 ~~~~~~~L~~~gi~~~~g~~~---------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 310 EKEFVKASEQEGFVGLKGHRS---------------------VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeccCCCC---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 567777775 8877665321 1579999999899999999999999987654
No 33
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=4.2e-35 Score=274.81 Aligned_cols=335 Identities=13% Similarity=0.134 Sum_probs=248.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC----CCcEEEeCChhHHHHHHHHHh
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD----PREIIWTSGATESNNLAIKGA 78 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~i~~~~g~t~a~~~~l~~l 78 (397)
.+++.++++++++++.+.... + ..........+++++++++++.. ++++++++|+|+|+.+++.++
T Consensus 10 ~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~ 79 (385)
T 2bkw_A 10 IPGPIILSGAVQKALDVPSLG---------H-TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNF 79 (385)
T ss_dssp SSSSCCCCHHHHHTTSCCCCC---------T-TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHH
T ss_pred cCCCcCchHHHHHHHhccccc---------c-CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHH
Confidence 455566778888776554321 1 12233456777889999998863 568999999999999999987
Q ss_pred HhhhccCCCEEEEcCC-CChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850 79 AHFYKKRGKHIITVQT-EHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 79 ~~~~~~~g~~vl~~~~-~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l 155 (397)
... .++||+|++.++ .|+... ...+...|.+++.++. +.++.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus 80 ~~~-~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l 156 (385)
T 2bkw_A 80 ILS-KAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDL 156 (385)
T ss_dssp SCT-TCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH
T ss_pred hcc-CCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCH
Confidence 521 147899887744 343332 1223334999999999 77888999999999987 89999999999999999999
Q ss_pred HHHHHHHHhc--CcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCC-cccc------ccccC
Q psy8850 156 LEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-RIEA------QIHGG 225 (397)
Q Consensus 156 ~~i~~l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~-~~~~------~~~~~ 225 (397)
++|.++|++| |+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|+++++++... .+.+ ...++
T Consensus 157 ~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (385)
T 2bkw_A 157 KAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFS 236 (385)
T ss_dssp HHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTT
T ss_pred HHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceee
Confidence 9999999999 999999999998887777766789999999999 777888999999876544 3321 00000
Q ss_pred ------------CccccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hhhcCcEEEeCCC-CC-C
Q psy8850 226 ------------GHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGL-MESIEEIYINGDM-NN-R 289 (397)
Q Consensus 226 ------------~~~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~-~~-~ 289 (397)
........++++...++++.++++.+.+. ++++.+++.++++++.+.| ++ + ++.+..+. .. .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~~~~~ 314 (385)
T 2bkw_A 237 SLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-L-QLTSVSRYPSNMS 314 (385)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-T-CCEESSCSSSTTB
T ss_pred cHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-c-CceecccCccccc
Confidence 00011224578888888888899887654 8889999999999999999 88 6 77776432 11 2
Q ss_pred CCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe-eC---CCCCHHHHHHHH
Q psy8850 290 IPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IG---RFTTEKEIDFTI 363 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~-~~---~~~~~~~i~~~~ 363 (397)
.+.++++.+++ ..++.+.|. ||.+.+|..+. ...+++||+ ++ ..++++++++++
T Consensus 315 ~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~------------------~~~~~iRis~~~~~~~~~~~e~i~~~~ 374 (385)
T 2bkw_A 315 AHGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKD------------------IGPKYIRIGHMGVTACNKNLPYMKNCF 374 (385)
T ss_dssp CSSCEEEECSC--HHHHHHHHHHTTEECBCCCCTT------------------TGGGEEEECCCGGGTSSTTCTHHHHHH
T ss_pred CCceEEEecCC--HHHHHHHHHHCCeEEeCCCCcc------------------cCCCEEEEEccccccccCCHHHHHHHH
Confidence 35677777764 667777775 88888775321 123789999 65 246899999999
Q ss_pred HHHHHHHHH
Q psy8850 364 KLLKMKVKK 372 (397)
Q Consensus 364 ~~l~~~~~~ 372 (397)
++|++++++
T Consensus 375 ~~l~~~~~~ 383 (385)
T 2bkw_A 375 DLIKLALQR 383 (385)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999988654
No 34
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=100.00 E-value=3.2e-35 Score=273.25 Aligned_cols=334 Identities=11% Similarity=0.082 Sum_probs=249.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcch---hhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh-hHHHHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIY---GWTAEKAIEKARNEVAQLIYAD-PREIIWTSGA-TESNNLAIK 76 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~-t~a~~~~l~ 76 (397)
+++++.++|+.+++++.+.+... .++....+.. .+...+...++++++++++|++ +++|++++|+ |+|+.+++.
T Consensus 7 ~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~ 85 (360)
T 1w23_A 7 FNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPM 85 (360)
T ss_dssp CCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHH
Confidence 56777889999999999988653 4444322222 4455678889999999999996 4689999998 999999998
Q ss_pred HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHH-HhcCCceEEEEecccCccccccc
Q psy8850 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~-~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
++.... +++++|+++.++|.+.. .+...| +++.+|.++ ++.+|++++++ ++++++++|++++++||||.++|
T Consensus 86 ~l~~~~-~~g~~vi~~~~~~~~~~----~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~ 159 (360)
T 1w23_A 86 NLLTKG-TIGNYVLTGSWSEKALK----EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ 159 (360)
T ss_dssp HHCCTT-CEEEEEECSHHHHHHHH----HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS
T ss_pred HhcCCC-CcccEEEecchhHHHHH----HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc
Confidence 887311 23567777766555422 223349 999999875 66789999999 89889999999999999999987
Q ss_pred HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCcc------
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHE------ 228 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~------ 228 (397)
+++++||++||+|++|+.+..+.++..+ |++++|+||.+|+.|+|+++++++..+.+.+.. ++...
T Consensus 160 -----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 231 (360)
T 1w23_A 160 -----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIK 231 (360)
T ss_dssp -----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHH
T ss_pred -----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhhhhhhhh
Confidence 3344899999999999988776666543 899999999778888999999987665554432 11110
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecCC-ChH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNFI-EGE 304 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 304 (397)
.++..++++...++++.++++.+.+ +++++.++++++++++.+.|++ ++++ .....+....+.++++.+++. +..
T Consensus 232 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (360)
T 1w23_A 232 SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNLRNEELNQ 310 (360)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEECSSHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEcCCCccHH
Confidence 2244567888888888889988765 5888999999999999999998 7654 433112112244677777642 345
Q ss_pred HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
++.+.|. ||.+.+|..+ .++|||+++..++++++++++++|++++++
T Consensus 311 ~~~~~l~~~gi~~~~~~~~---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 311 QFLAKAKEQGFVGLNGHRS---------------------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeeeecCCCC---------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 6666664 8877765311 278999999888999999999999988754
No 35
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=8.4e-33 Score=264.63 Aligned_cols=347 Identities=13% Similarity=-0.008 Sum_probs=255.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-----EEEeCChhHHHHHHHHHhHhhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-----IIWTSGATESNNLAIKGAAHFY 82 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----i~~~~g~t~a~~~~l~~l~~~~ 82 (397)
++++.+.+++.+++.....+ +...+...+...++++++++++|++.++ +++|+|+|+|+.+++.++...+
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWID-----KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTC-----TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCC-----hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 56678888887777542222 2223455677888999999999998765 9999999999999998876321
Q ss_pred c----cCC-----CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850 83 K----KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 83 ~----~~g-----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
. .+| ++|+++. .|.++..++..+ |++++.+|.++ ++.+|+++|+++++++|++|++++++||||.+
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~ 203 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY 203 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBB
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc---CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCccc
Confidence 1 133 6999999 999999888777 99999999986 78999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhc------CcEEEEecccccCcc-------ccccCcccccEEEecccc-ccCCCCceEEEEecC-CC-C
Q psy8850 153 QPILEIGELCRSK------GVIFHCDAAQAVGKI-------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PR-T 216 (397)
Q Consensus 153 ~~l~~i~~l~~~~------gi~livD~a~~~~~~-------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~-~ 216 (397)
.|+++|.++|+++ |+++|+|++|+.+.. +.++...++|++++|+|| +++|.|+|+++++++ .. .
T Consensus 204 ~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~ 283 (452)
T 2dgk_A 204 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 283 (452)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred CCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHH
Confidence 9999999999996 999999999986543 123333479999999999 567888999999754 22 2
Q ss_pred ccc--cccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCc
Q psy8850 217 RIE--AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPH 292 (397)
Q Consensus 217 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~ 292 (397)
.+. +...++........++.+....+++.+++..+ .+++.++.+++.++++++.+.|++ ++++.+..+.. ....+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~~ 362 (452)
T 2dgk_A 284 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIP 362 (452)
T ss_dssp GGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBSS
T ss_pred HhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCeE
Confidence 221 11111111000012344444556666666654 457889999999999999999999 88888875421 01246
Q ss_pred eEEEEecCC-----ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850 293 NLNISFNFI-----EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 365 (397)
Q Consensus 293 ~~~~~~~~~-----~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 365 (397)
++.|.++.. +..++.+.|. |+.+... ..+.. .....++|++++..+|.+++|++++.
T Consensus 363 ~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~--~~~~~--------------~~~~~~lRis~~~~~t~e~id~li~~ 426 (452)
T 2dgk_A 363 AVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF--TLGGE--------------ATDIVVMRIMCRRGFEMDFAELLLED 426 (452)
T ss_dssp EEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE--ECSTT--------------CTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEEecCcccccCCHHHHHHHHHhcCCeeeee--eCCcc--------------cCCeEEEEEEecCCCCHHHHHHHHHH
Confidence 777777642 3467888876 7654421 11100 01236899999998999999999999
Q ss_pred HHHHHHHHHhcCccc
Q psy8850 366 LKMKVKKLRELSPLW 380 (397)
Q Consensus 366 l~~~~~~~~~~~~~~ 380 (397)
|+++++++++..+.+
T Consensus 427 l~~~~~~~~~~~~~~ 441 (452)
T 2dgk_A 427 YKASLKYLSDHPKLQ 441 (452)
T ss_dssp HHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999888765555
No 36
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-33 Score=263.18 Aligned_cols=307 Identities=17% Similarity=0.098 Sum_probs=241.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
.++|+.+++++.+.+.....+| .....++++.++++++++++++++++|+++|+.+++.++. ++|
T Consensus 44 ~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~----~~g 108 (363)
T 3ffh_A 44 LGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL----DTT 108 (363)
T ss_dssp TCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----STT
T ss_pred CCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc----cCC
Confidence 3578999999888664322111 2356889999999999988899999999999999999886 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc-
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK- 165 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~- 165 (397)
++|+++.++|+++...+... |.+++.+|.++++.+|++++++++++++++|++++++||||.+.|.+++.++++.+
T Consensus 109 d~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 185 (363)
T 3ffh_A 109 TNTVMATPTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVP 185 (363)
T ss_dssp CEEEEEESSCHHHHHHHHHH---TCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSC
T ss_pred CEEEEcCCChHHHHHHHHHc---CCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCC
Confidence 99999999999998888777 99999999988888999999999999999999999999999999999999998887
Q ss_pred -CcEEEEecccccCcc-----ccc-cCcccccEEEeccccccCCCCc--eEEEEecCCCCccccccccCCccccccCCCC
Q psy8850 166 -GVIFHCDAAQAVGKI-----DIN-IQNYKVDLMSFSAHKIYGPKGI--GALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236 (397)
Q Consensus 166 -gi~livD~a~~~~~~-----~~~-~~~~~~d~~~~s~~K~~g~~g~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (397)
|+++|+|++|+.... ... ....+.++++.|++|.+|+.|. |+++++++..+.+..... ..+.
T Consensus 186 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~---------~~~~ 256 (363)
T 3ffh_A 186 SDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP---------PFNT 256 (363)
T ss_dssp TTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC---------SCCC
T ss_pred CCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC---------CCCC
Confidence 999999999983221 111 1122456889999997775554 999998765555443321 2346
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcE
Q psy8850 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIA 314 (397)
Q Consensus 237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~ 314 (397)
+.....++.++++.. +++++..+++.++++++.+.|++ ++++.+..+. +.++++.++. +..++.+.|. ||.
T Consensus 257 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~~-~~~~~~~~l~~~gi~ 329 (363)
T 3ffh_A 257 TSIGQKLAIEAIKDQ-AFIGECRTSNANGIKQYEAFAKR-FEKVKLYPAN----GNFVLIDLGI-EAGTIFSYLEKNGYI 329 (363)
T ss_dssp BHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCC----SSEEEEECSS-CHHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHhh-CCCceECCCC----CeEEEEECCC-CHHHHHHHHHHCCeE
Confidence 666677776777632 56788899999999999999998 7788776432 3456777764 6777877776 899
Q ss_pred ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
+.+|..+.. ++++||+++ +++|+++++++|+++
T Consensus 330 v~~g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 330 TRSGAALGF-------------------PTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp CEETTTTTC-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred EEeCccCCC-------------------CCeEEEECC---CHHHHHHHHHHHHHh
Confidence 998865432 389999987 899999999999875
No 37
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=7.7e-34 Score=266.83 Aligned_cols=324 Identities=15% Similarity=0.110 Sum_probs=246.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++|+.+++++.+.+..... .|. ....+..+++++.+++.+| +++++|++++|+++|+.+++.++. ++
T Consensus 40 ~~~~~v~~a~~~~~~~~~~-----~y~--~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~----~~ 108 (391)
T 3dzz_A 40 KIAPEIMASMEEKLKVAAF-----GYE--SVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT----SP 108 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCC-----CCB--CCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred CCCHHHHHHHHHHHhcCcC-----CCC--CCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC----CC
Confidence 5789999999998865210 111 1235677788888888888 567789999999999999999987 78
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC--CCCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI 158 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i 158 (397)
||+|+++.++|+++...+... |.+++.+|.+ .+ +.+|+++++++++ +++++|++++++||||.++| +++|
T Consensus 109 gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i 185 (391)
T 3dzz_A 109 GDQILVQEPVYNMFYSVIEGN---GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRI 185 (391)
T ss_dssp TCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCeEEECCCCcHHHHHHHHHc---CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHH
Confidence 999999999999998887776 9999999985 22 3489999999998 68999999999999999954 7889
Q ss_pred HHHHHhcCcEEEEecccccCc----cccccCccc---cc--EEEeccccccCCC--CceEEEEe-cCCCCccccccccCC
Q psy8850 159 GELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VD--LMSFSAHKIYGPK--GIGALYIR-RNPRTRIEAQIHGGG 226 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~----~~~~~~~~~---~d--~~~~s~~K~~g~~--g~g~~~~~-~~~~~~~~~~~~~~~ 226 (397)
.++|++||+++|+|++|+.+. ...++..+. .| +++.|+||.+|+. ++|+++++ ++..+.+......
T Consensus 186 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-- 263 (391)
T 3dzz_A 186 AELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFL-- 263 (391)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHh--
Confidence 999999999999999998432 222232222 45 9999999955533 47998887 5444444332210
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE 304 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 304 (397)
....+++...+.++.++++...++++++.+++.++++++.+.|++.++++.+..+.. +..+++.++. .+..
T Consensus 264 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 336 (391)
T 3dzz_A 264 ----AGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNA---SYLAWVDISALGMNAE 336 (391)
T ss_dssp ----HTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCB---SSEEEEECGGGCSCHH
T ss_pred ----hccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCc---eEEEEEehhhcCCCHH
Confidence 112345666666666777765556788899999999999999988567887775543 3445567763 5778
Q ss_pred HHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 305 SLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 305 ~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
++.+.| . ||.+.+|..|... ..+++||+++ ++++++++++++|.++++++
T Consensus 337 ~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 337 DFCKYLREKTGLIISAGNGYRGN-----------------GHEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHCEECEESGGGCTT-----------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 888887 3 9999998766541 2488999998 58999999999999988764
No 38
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-32 Score=264.00 Aligned_cols=343 Identities=15% Similarity=0.092 Sum_probs=256.7
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCc---EEEeCChhHHHHHHHHHhHh
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PRE---IIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~---i~~~~g~t~a~~~~l~~l~~ 80 (397)
++++++.+.+++.+.+.....++.. .+...+...++++++++++|++ +++ ..+++|+++|+.+++.++..
T Consensus 65 t~~~~~~v~~~l~~~~~~~~~~~~~-----~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~ 139 (502)
T 3hbx_A 65 TTWMEPECDKLIMSSINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKR 139 (502)
T ss_dssp CCCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCCChhc-----ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHH
Confidence 4567899999999887664443322 2345677788999999999998 444 34699999999999888764
Q ss_pred hhc----cCCC-----EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCccc
Q psy8850 81 FYK----KRGK-----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIG 150 (397)
Q Consensus 81 ~~~----~~g~-----~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG 150 (397)
.+. .+|+ +|+++.++|.++...+..+ |++++.+|.+++ +.+|+++++++++++|++|++++++|+||
T Consensus 140 ~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG 216 (502)
T 3hbx_A 140 KWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNG 216 (502)
T ss_dssp HHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHT---TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTC
T ss_pred HHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHc---CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCC
Confidence 321 1254 9999999999998888777 999999999865 89999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhc------CcEEEEecccccCc-------cccccCcccccEEEecccc-ccCCCCceEEEEecC-CC
Q psy8850 151 VIQPILEIGELCRSK------GVIFHCDAAQAVGK-------IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PR 215 (397)
Q Consensus 151 ~~~~l~~i~~l~~~~------gi~livD~a~~~~~-------~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~ 215 (397)
.+.|+++|.++|+++ |+++|+|++|+.+. .+.++...++|++++|+|| +++|.|+|+++++++ ..
T Consensus 217 ~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l 296 (502)
T 3hbx_A 217 EFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296 (502)
T ss_dssp CBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred cccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHh
Confidence 999999999999999 99999999998443 2333444489999999999 568889999998754 22
Q ss_pred Ccc---ccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCC
Q psy8850 216 TRI---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRI 290 (397)
Q Consensus 216 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~ 290 (397)
... .+...++........++.+...++++.+++..+ .+++.++.++..+++++|.+.|++ ++++.++.+ +.
T Consensus 297 ~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~--- 372 (502)
T 3hbx_A 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSKDEG--- 372 (502)
T ss_dssp CGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSCSSS---
T ss_pred hHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCC---
Confidence 221 111112111111112344444667777777765 457889999999999999999999 888988765 22
Q ss_pred CceEEEEecC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850 291 PHNLNISFNF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 365 (397)
Q Consensus 291 ~~~~~~~~~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 365 (397)
..++.|.+++ .+..++.+.|. |+.+.... .+. .......+||++...++.++++++++.
T Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~--~p~--------------~~~~~~~lRisv~~~~t~edid~li~~ 436 (502)
T 3hbx_A 373 VPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYT--MPP--------------NAQHITVLRVVIREDFSRTLAERLVID 436 (502)
T ss_dssp SSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEE--CCT--------------TCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ceEEEEEecCCCcCCHHHHHHHHHhCCcEEeecc--CCc--------------ccCCceEEEEEeCCCCCHHHHHHHHHH
Confidence 4577777764 34558888886 77664321 110 011236899999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy8850 366 LKMKVKKLREL 376 (397)
Q Consensus 366 l~~~~~~~~~~ 376 (397)
|+++++++++.
T Consensus 437 L~~~l~~l~~~ 447 (502)
T 3hbx_A 437 IEKVMRELDEL 447 (502)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999888763
No 39
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.6e-33 Score=262.24 Aligned_cols=306 Identities=15% Similarity=0.090 Sum_probs=240.4
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
.++|+.+++++.+.+.....++.. ...++++.+++++++++++|++++|+++|+.+++.++. ++|
T Consensus 42 ~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~g 106 (365)
T 3get_A 42 FGTPPKAIECLRQNANKAHLYPDD-----------SMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL----NSK 106 (365)
T ss_dssp TCSCHHHHHHHHHHGGGTTSCCCT-----------TCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----CTT
T ss_pred CCCCHHHHHHHHHHHHhhccCCCC-----------ChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh----CCC
Confidence 357899999999988754433322 11478999999999988899999999999999999887 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHH--
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR-- 163 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~-- 163 (397)
|+|+++.++|+++...+... |.+++.+|. ++++ +|++++++++++++++|++++++||||.++|.+++.++++
T Consensus 107 d~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 182 (365)
T 3get_A 107 NAFLQAGVTFAMYEIYAKQC---GAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGV 182 (365)
T ss_dssp CEEEECSSCCTHHHHHHHHH---TCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS
T ss_pred CEEEEeCCChHHHHHHHHHc---CCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC
Confidence 99999999999998888877 999999998 6677 9999999999999999999999999999999988888887
Q ss_pred hcCcEEEEecccccCc------ccccc----CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccc
Q psy8850 164 SKGVIFHCDAAQAVGK------IDINI----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL 231 (397)
Q Consensus 164 ~~gi~livD~a~~~~~------~~~~~----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (397)
++|+++|+|++|+.+. .+.+. ...+.++++.|+||.+|+.| +|+++++++....+......
T Consensus 183 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~------- 255 (365)
T 3get_A 183 NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP------- 255 (365)
T ss_dssp CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT-------
T ss_pred CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC-------
Confidence 7799999999998322 11211 12256789999999655434 79999876555544433211
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC
Q psy8850 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK 311 (397)
Q Consensus 232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (397)
.+++.....++.++++.. +++++..+++.++++++.+.|++ + ++.+..+. +.++++.++..+..++.+.|.
T Consensus 256 --~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~l~ 326 (365)
T 3get_A 256 --FNVSNLALKAAVAAMDDD-EFTEKTLENNFSQMELYKEFAKK-H-NIKIIDSY----TNFITYFFDEKNSTDLSEKLL 326 (365)
T ss_dssp --TCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECSSSCHHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHh-C-CCEECCCC----CeEEEEECCCCCHHHHHHHHH
Confidence 235666666666777642 56788899999999999999999 5 77765432 345677776546778887776
Q ss_pred --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
||.+.+|..|. .+++||+++ +++++++++++|++++
T Consensus 327 ~~gi~v~~g~~~~--------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 327 KKGIIIRNLKSYG--------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp TTTEECEECGGGT--------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HCCEEEEECccCC--------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 89998885433 289999987 7999999999998875
No 40
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=3.8e-34 Score=268.09 Aligned_cols=319 Identities=17% Similarity=0.159 Sum_probs=242.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
++++.+.+++.+.+.. . + .|.. .....++++.++++++++++++++++|+++|+.+++.++. ++|+
T Consensus 38 ~~~~~v~~a~~~~~~~-~-~----~y~~----~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd 103 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGR-Q-D----QYAP----PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGD 103 (381)
T ss_dssp CCCHHHHHHHHHHTTT-S-C----SCCC----TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHHH-h-c----CCCC----CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCC
Confidence 4678999999988764 1 1 1211 1235789999999999988899999999999999999886 7899
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccC---CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHH
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 161 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l 161 (397)
+|++++++|+++...+... |.+++.+|.+ +++.+|++++++++++++++|++++++||||.++| +++|+++
T Consensus 104 ~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~ 180 (381)
T 1v2d_A 104 EVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL 180 (381)
T ss_dssp EEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHc---CCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHH
Confidence 9999999999998776655 9999999986 45778999999999989999999999999999987 7889999
Q ss_pred HHhcCcEEEEecccccCc---cccccC--cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCC
Q psy8850 162 CRSKGVIFHCDAAQAVGK---IDINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (397)
Q Consensus 162 ~~~~gi~livD~a~~~~~---~~~~~~--~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (397)
|++||+++|+|++|+.+. .+.++. ..+.|+++.|+||.+|+.| +|+++++++..+.+..... +...
T Consensus 181 ~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~ 253 (381)
T 1v2d_A 181 ARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ-------WTSF 253 (381)
T ss_dssp HHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHH-------HHTS
T ss_pred HHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHh-------hccc
Confidence 999999999999998532 222222 3478999999999767556 8999998766555443221 1123
Q ss_pred CCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850 235 TLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK- 311 (397)
Q Consensus 235 ~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 311 (397)
+.+.....++.++++.. .++++++.+++.++++++.+.|++ .++.+..+.. +.++++.++..+ +...+.
T Consensus 254 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~~~~~~~~~~~~---~~~~l~~ 325 (381)
T 1v2d_A 254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELPGWD---AFRLVEE 325 (381)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECTTCC---HHHHHHH
T ss_pred CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecCCCc---ceEEEEecChHh---HHHHHHh
Confidence 45556666666778765 456788999999999999999998 4777765432 345666766442 444443
Q ss_pred -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
||.+.+|..|... ....+++||+++. +++++++++++|++++++.++
T Consensus 326 ~gi~v~~g~~~~~~---------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 326 ARVALIPASAFYLE---------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp TCEECEEGGGGCSS---------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred CCEEEecchHhCCC---------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence 9999988765430 0124789999986 899999999999999887665
No 41
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.4e-33 Score=268.11 Aligned_cols=324 Identities=15% Similarity=0.092 Sum_probs=244.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
.++++.+++++.+.+..... . .| .......++++.++++++ +++++|++|+|+++|+.+++.++.
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~---~-~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~-- 139 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKY---N-GY----APSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA-- 139 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCS---S-SC----CCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHhcCcC---C-CC----CCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--
Confidence 47889999999998876211 0 11 112346789999999999 677899999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++|++|+++.++|+++...+... |.+++.++.+ .++.+|++++++++++++++|++++++||||.+.| ++
T Consensus 140 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~ 214 (427)
T 3dyd_A 140 --NPGQNILVPRPGFSLYKTLAESM---GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQ 214 (427)
T ss_dssp --CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHH
Confidence 78999999999999998877776 9999999886 35678999999999999999999999999999999 89
Q ss_pred HHHHHHHhcCcEEEEecccccCc----cccccCcccc---cEEEeccccccCCCC--ceEEEEecCCCC---cccccccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQNYKV---DLMSFSAHKIYGPKG--IGALYIRRNPRT---RIEAQIHG 224 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~----~~~~~~~~~~---d~~~~s~~K~~g~~g--~g~~~~~~~~~~---~~~~~~~~ 224 (397)
+|+++|++||+++|+|++|+... ....+..++. .+++.|++|.+|..| +|++++++.... .+...+..
T Consensus 215 ~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~ 294 (427)
T 3dyd_A 215 KILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK 294 (427)
T ss_dssp HHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH
Confidence 99999999999999999998422 2222222222 367889999655445 799998854211 11111100
Q ss_pred CCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec----
Q psy8850 225 GGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---- 299 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 299 (397)
......+++.....++.++++.. .+++.+..+++.++++++.+.|++ ++++.+..+.. +.++++.++
T Consensus 295 ----~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~p~~---g~~~~~~l~~~~~ 366 (427)
T 3dyd_A 295 ----LSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPVRPSG---AMYLMVGIEMEHF 366 (427)
T ss_dssp ----HHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCSB---TTEEEEEECGGGC
T ss_pred ----HHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe---eEEEEEecCHhhc
Confidence 00012355666677776777742 446788889999999999999998 88988765543 345555654
Q ss_pred --CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 300 --FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 300 --~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
..+..++...|. ||.+.+|..|.. .+++||+++ ++++++++++++|.+++++++
T Consensus 367 ~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 367 PEFENDVEFTERLVAEQSVHCLPATCFEY-------------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp TTCSSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEESC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHCCEEEECCcccCC-------------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHHhh
Confidence 134567776662 999999865543 389999987 689999999999999998765
No 42
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=1.3e-32 Score=267.42 Aligned_cols=336 Identities=19% Similarity=0.164 Sum_probs=253.8
Q ss_pred CCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcE--EEeCChhHHHHHHHHHhHhhhc
Q psy8850 9 IDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REI--IWTSGATESNNLAIKGAAHFYK 83 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~i--~~~~g~t~a~~~~l~~l~~~~~ 83 (397)
..+.+.+++.+.+.... .++. .+...+...+...++++++++++|.++ +++ ++++|+++|+.++++++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~ 185 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPL--HPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR 185 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTT--CTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCc--ccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhh
Confidence 44666666666665422 2222 222233445667778999999999874 567 9999999999999998873210
Q ss_pred ----cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850 84 ----KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 84 ----~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
.++|+|+++.+.|+++...+..+ |.+++.+|.++++.+|+++|++++++++++|++++++||+|.+.|+++|.
T Consensus 186 ~~~g~~~d~Vi~~~~~~~~~~~~~~~~---G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~ 262 (514)
T 3mad_A 186 ATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIA 262 (514)
T ss_dssp HHHCCSSCEEEEETTSCTHHHHHHHHH---TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHH
T ss_pred hhcCCCCCeEEEeCccchHHHHHHHHc---CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHH
Confidence 11289999999999999988888 99999999998999999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEecccccCcc-----------ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc----ccc
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKI-----------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA----QIH 223 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~-----------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~----~~~ 223 (397)
++|++||++||+|++|+.+.. +++....++|++++|+|| ++++.|+|+++++++....... ...
T Consensus 263 ~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 342 (514)
T 3mad_A 263 ALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWP 342 (514)
T ss_dssp HHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCT
T ss_pred HHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccC
Confidence 999999999999999985432 344455588999999999 5788889999998753322211 111
Q ss_pred cCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC
Q psy8850 224 GGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (397)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (397)
++........++.+....+++.++++.+. .+++++.+++.++++++.+.|++ ++++.+..++ ..++.+...+.+
T Consensus 343 ~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~----~~~~~~~~~~~~ 417 (514)
T 3mad_A 343 GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA-IPSLKILGDP----LWVIAVASDELN 417 (514)
T ss_dssp TCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCEESSCC----SSEEEEECSSSC
T ss_pred CCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCC----eEEEEEeCCCCC
Confidence 11111112245566666777778887664 46888999999999999999999 8888887654 236666666667
Q ss_pred hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
..++.+.|. |+.+ +|..+ ++.+|++++.. ++++++++++++|+++++++++.
T Consensus 418 ~~~l~~~L~~~Gi~v-~g~~~---------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 418 IYQVMEEMAGRGWRL-NGLHR---------------------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp HHHHHHHHHTTTCBC-EEETT---------------------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCEe-ccCCC---------------------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 778888876 6666 33211 26799999843 56799999999999999988763
No 43
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=3e-33 Score=260.65 Aligned_cols=307 Identities=12% Similarity=0.103 Sum_probs=240.9
Q ss_pred CCCHHHHHHHHHHHhh--ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++|+.+++++.+.+.. ...++. ....++++++++++|+ ++++|++|+|+++|+++++.++. +
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----~ 107 (367)
T 3euc_A 43 RLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA----R 107 (367)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC----C
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc----C
Confidence 5789999999998874 221111 1357899999999999 77799999999999999999887 7
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCccccccc---HHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILEIGE 160 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~---l~~i~~ 160 (397)
+||+|++..++|+++...+... |.+++.+|.++++.+|++++++++++ ++++|++++++||||.++| +++|++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~ 184 (367)
T 3euc_A 108 PGAKVMAPVPGFVMYAMSAQFA---GLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVR 184 (367)
T ss_dssp TTCEEEEEESCSCCSCHHHHTT---TCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 8999999999999998876665 99999999998888999999999998 9999999999999999986 567888
Q ss_pred HHHhc--CcEEEEecccccCc---cccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850 161 LCRSK--GVIFHCDAAQAVGK---IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (397)
Q Consensus 161 l~~~~--gi~livD~a~~~~~---~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
+|++| |+++|+|++|+... ....+...+.++++.|++|. +..| +|+++++++....+..... .
T Consensus 185 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~---------~ 254 (367)
T 3euc_A 185 AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP---------P 254 (367)
T ss_dssp HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC---------S
T ss_pred hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC---------C
Confidence 89999 99999999988322 11122333567889999996 4434 7888887655544433321 2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-- 311 (397)
Q Consensus 234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 311 (397)
.+.+.....++.++++. .+++++..+++.++++++.+.|++ ++++.+... . +.++++.++ +..++.+.|.
T Consensus 255 ~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~-~---~~~~~~~~~--~~~~l~~~l~~~ 326 (367)
T 3euc_A 255 YNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAA-HGGVTVFPS-A---ANFLLARVP--DAAQTFDRLLAR 326 (367)
T ss_dssp SCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHT-STTCEECCC-S---SSEEEEECS--CHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCC-C---CeEEEEECC--CHHHHHHHHHHC
Confidence 24566667777677776 556788899999999999999998 888875433 2 445567766 6777877776
Q ss_pred CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
||.+.+|..|.. ...+++||+++ +++++++++++|++++
T Consensus 327 gi~v~~~~~~~~-----------------~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 327 KVLIKNVSKMHP-----------------LLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp TEECEECGGGCG-----------------GGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred CeEEEECCccCC-----------------CCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 899998865532 12489999987 8999999999999875
No 44
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=3.2e-33 Score=262.56 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=238.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCChhHHHHHHHHHhHh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPRE-IIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~-i~~~~g~t~a~~~~l~~l~~ 80 (397)
++++.+.+++.+.+.... . .|... ....++++.+++++ | +++++ +++++|+++|+.+++.++.
T Consensus 39 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~- 108 (389)
T 1gd9_A 39 DTPQHIKEYAKEALDKGL----T-HYGPN----IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL- 108 (389)
T ss_dssp CCCHHHHHHHHHHHHTTC----C-SCCCT----TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-
T ss_pred CCCHHHHHHHHHHHhCCC----C-CCCCC----CCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-
Confidence 467899999999886521 1 12211 12344555555555 8 46778 9999999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l 155 (397)
++|++|+++.++|+++...+... |.+++.+|.++ ++.+|++++++++++++++|++++++||||.++| +
T Consensus 109 ---~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l 182 (389)
T 1gd9_A 109 ---KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDL 182 (389)
T ss_dssp ---CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHH
Confidence 78999999999999998887776 99999999874 4568999999999989999999999999999986 7
Q ss_pred HHHHHHHHhcCcEEEEecccccCcc----ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~ 225 (397)
++|+++|++||+++|+|++|+.+.. +.++.. .+.|+++.|+||.+|++| +|+++++++..+.+.....++
T Consensus 183 ~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 262 (389)
T 1gd9_A 183 EEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN 262 (389)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhh
Confidence 8999999999999999999985543 122222 357899999999777556 699999866555544332211
Q ss_pred CccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CC
Q psy8850 226 GHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FI 301 (397)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 301 (397)
..+.+.....++.++++.... +++++.+++.++++++.+.|++ + ++.+..+.. +.++++.++ +.
T Consensus 263 -------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~ 330 (389)
T 1gd9_A 263 -------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKPKG---AFYIFPRIRDTGL 330 (389)
T ss_dssp -------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCB---TTEECCBCGGGTC
T ss_pred -------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eeEEEEeccCCCC
Confidence 124455555666667765444 6788899999999999999998 5 665554322 334455665 34
Q ss_pred ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+..++.+.|. ||.+.+|..|.+ ...+++||+++. +++++++++++|.+++++.
T Consensus 331 ~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 331 TSKKFSELMLKEARVAVVPGSAFGK-----------------AGEGYVRISYAT--AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp CHHHHHHHHHHHTCEECEEGGGGCG-----------------GGTTBEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 6677777763 899998865542 123789999985 8999999999999988653
No 45
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=2.4e-33 Score=259.96 Aligned_cols=307 Identities=15% Similarity=0.105 Sum_probs=240.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
++|+.+++++.+.+.... .|. .....++++.++++++++++++++++|+++|+.+++.++. ++||
T Consensus 29 ~~~~~v~~a~~~~~~~~~------~y~-----~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~gd 93 (354)
T 3ly1_A 29 GMSPKAQAAARDAVVKAN------RYA-----KNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA----SLEA 93 (354)
T ss_dssp CCCHHHHHHHHHTGGGTT------SCC-----HHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHhhCc------CCC-----CCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh----CCCC
Confidence 578999999998886522 221 2357899999999999988899999999999999999887 7899
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEecccCcccccccHHHHHHHHHh-
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRS- 164 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~- 164 (397)
+|+++.++|+++...+... |.+++.+|.++++.+|+++++++++ +++++|++++++||||.++|.+++.++++.
T Consensus 94 ~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 170 (354)
T 3ly1_A 94 QLVIPELTYGDGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASK 170 (354)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC
T ss_pred eEEECCCCchHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 9999999999998877766 9999999999788899999999998 789999999999999999998888888777
Q ss_pred -cCcEEEEecccccCcccc---c----cCcc-cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850 165 -KGVIFHCDAAQAVGKIDI---N----IQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (397)
Q Consensus 165 -~gi~livD~a~~~~~~~~---~----~~~~-~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
||+++|+|++|+.....- . .... +.++++.|+||.+|..| +|+++++++..+.+..... .
T Consensus 171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~ 241 (354)
T 3ly1_A 171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVA---------G 241 (354)
T ss_dssp CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTT---------C
T ss_pred CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcC---------C
Confidence 999999999998433211 1 1122 56699999999666434 7998887655444443321 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-- 311 (397)
Q Consensus 234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 311 (397)
.+.+.....++.++++.. +++++..+++.++++++.+.|++ + ++.+..+ . +.++++.++. +..++...|.
T Consensus 242 ~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~-~---~~~~~~~~~~-~~~~~~~~l~~~ 313 (354)
T 3ly1_A 242 EKINFSGVDAALASMNDS-AFITYSKKSNDVSRQILLKALED-L-KLPYLPS-E---GNFVFHQLVV-PLKDYQTHMADA 313 (354)
T ss_dssp SCCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC-C---SSEEEEECSS-CHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC-C---ceEEEEECCC-CHHHHHHHHHHC
Confidence 356666666666777643 56788899999999999999998 4 5554432 1 4556777765 6777877776
Q ss_pred CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
||.+. |.++. ..+++||+++ +++++++++++|++++++
T Consensus 314 gi~v~-g~~~~-------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 314 GVLIG-RAFPP-------------------ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp TEECC-CCCTT-------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CEEEe-ecCCC-------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 88887 65332 1389999986 799999999999988753
No 46
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=267.36 Aligned_cols=338 Identities=16% Similarity=0.125 Sum_probs=257.8
Q ss_pred CCCHHHHHHHHHHHhhccC-CCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhh-c
Q psy8850 8 PIDPRVVDKMIPYLRVQFG-NPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY-K 83 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~-~ 83 (397)
..++.+.+++.+.+..... ++. .+.......+...++++++++++|++ ++++++++|+++|+.+++.++.... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~ 152 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALH 152 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHh
Confidence 3457888888888876332 222 22223345577788999999999987 6789999999999999999886321 1
Q ss_pred cCC---CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850 84 KRG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 84 ~~g---~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++| ++|+++.+.|+++..++..+ |.+++.+|.++ ++.+|+++|++++++++++|++++++||+|.+.|+++|.
T Consensus 153 ~~g~~~~~Vi~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 153 HRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp HSCCSSCEEEEETTSCHHHHHHHHHS---CCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred cCCCCCceEEEeCCccHHHHHHHHHc---CCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 134 89999999999999888877 99999999987 788999999999999999999999999999999999999
Q ss_pred HHHHhcCcEEEEecccccCcc------------ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc----cccc
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKI------------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI----EAQI 222 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~------------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~----~~~~ 222 (397)
++|++||+++|+|++|+.+.. +++....++|+++.|+|| ++++.|+|+++++++..... .+..
T Consensus 230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 309 (497)
T 3mc6_A 230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW 309 (497)
T ss_dssp THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTC
T ss_pred HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccc
Confidence 999999999999999984322 345555689999999999 57888899999886533222 1111
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (397)
.++........++.+...++++.++++.+. .++.++.++..++++++++.|++.++++.+..++. ..++.+..++.
T Consensus 310 ~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~---~~~v~~~~~~~ 386 (497)
T 3mc6_A 310 TGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR---YSVISFSSKTL 386 (497)
T ss_dssp TTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC---SSEEEEECTTT
T ss_pred cCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC---eeEEEEeCCCC
Confidence 111111112234445555777778887664 46888999999999999999998347888876533 45666666666
Q ss_pred ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
+..++.+.|. |+.+..+. . ...+|++++ .++.+++++++++|+++++++++.
T Consensus 387 ~~~~l~~~L~~~Gi~v~~~~--~--------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 387 NIHELSDRLSKKGWHFNALQ--K--------------------PVALHMAFT-RLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp THHHHHHHHHTTTCBCEECC--S--------------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhCCEEEecCC--C--------------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 7788888876 77665331 1 256899998 579999999999999999887653
No 47
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=4e-33 Score=261.99 Aligned_cols=320 Identities=12% Similarity=0.137 Sum_probs=244.6
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++|+.+++++.+.+.... +.++....+...++++.++++++ ++++++++++|+++|+.+++.++. ++
T Consensus 45 ~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~ 113 (391)
T 4dq6_A 45 KAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT----KA 113 (391)
T ss_dssp CCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred CCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC----CC
Confidence 568999999999886511 11112235678889999999999 677889999999999999999887 78
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 158 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i 158 (397)
|++|+++.++|+++...+... |.+++.+|.+ .+ +.+|++++++++++ +++|++++++||||.++| +++|
T Consensus 114 gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i 189 (391)
T 4dq6_A 114 NDKIMIQEPVYSPFNSVVKNN---NRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKL 189 (391)
T ss_dssp TCEEEECSSCCTHHHHHHHHT---TCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHHHc---CCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHH
Confidence 999999999999998887766 9999999987 33 35899999999998 999999999999999965 6788
Q ss_pred HHHHHhcCcEEEEecccccCc----cccccCcc-----cccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCC
Q psy8850 159 GELCRSKGVIFHCDAAQAVGK----IDINIQNY-----KVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGG 226 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~----~~~~~~~~-----~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~ 226 (397)
+++|++||+++|+|++|+... ...++..+ +.++++.|+||.+|+.| +|++++++ +..+.+......
T Consensus 190 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-- 267 (391)
T 4dq6_A 190 GDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTR-- 267 (391)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH--
T ss_pred HHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHh--
Confidence 999999999999999998532 22223322 33488999999555333 78888875 444444332211
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChH
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE 304 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 304 (397)
...++++...+.++.++++...+.++++.++++++++++.+.|++.++++.+..+.. ..++++.++ +.+..
T Consensus 268 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 340 (391)
T 4dq6_A 268 ----IDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEG---TYLLWVDFSALGLSDE 340 (391)
T ss_dssp ----TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSB---SSEEEEECGGGCCCHH
T ss_pred ----hcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCc---cEEEEEEhhhcCCCHH
Confidence 123356666777776777765556788899999999999999987567888776543 344557776 35777
Q ss_pred HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
++.+.|. ||.+.+|..|.. ...+++||+++ ++++++++++++|++++
T Consensus 341 ~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 341 ELESILVQKGKVALNQGNSFGI-----------------GGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHTTCEECEEGGGGCT-----------------TCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEeeCchhhCC-----------------CCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 8887774 899999876654 12489999998 58999999999999875
No 48
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=4.3e-33 Score=261.30 Aligned_cols=315 Identities=14% Similarity=0.091 Sum_probs=231.6
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++|+.+.+++.+.+.... . .|... ....++++.+++++ | +++++|++|+|+++|+.+++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~-- 112 (385)
T 1b5p_A 44 DTPEHVKEAARRALAQGK----T-KYAPP----AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-- 112 (385)
T ss_dssp CCCHHHHHHHHHHHHTTC----C-SCCCT----TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhcCC----C-CCCCC----CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc--
Confidence 457889999988875411 1 12211 12345555665555 5 356789999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++||+|+++.|+|+++...+... |.+++.+|.++ ++.+|++++++++++++++|++++++||||.++| ++
T Consensus 113 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~ 187 (385)
T 1b5p_A 113 --DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLE 187 (385)
T ss_dssp --CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHH
Confidence 79999999999999998877766 99999999974 4578999999999989999999999999999988 78
Q ss_pred HHHHHHHhcCcEEEEecccccCcc---ccccCcc--cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~~--~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~ 229 (397)
+|+++|++||++||+|++|+.... ..++..+ +.++++.|+||.+|++| +|+++++++....+......
T Consensus 188 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~----- 262 (385)
T 1b5p_A 188 ALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQ----- 262 (385)
T ss_dssp HHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhh-----
Confidence 899999999999999999984332 1222222 56889999999777656 89999886554444332211
Q ss_pred cccCCCCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChH
Q psy8850 230 GLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE 304 (397)
Q Consensus 230 ~~~~~~~~~~~~~~l~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 304 (397)
. ..+.+.....+..++++. ..+++++..+++.++++++.+.|++ + ++.+..+.. +..+++.++ +.+..
T Consensus 263 -~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~~~~ 335 (385)
T 1b5p_A 263 -S-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAVRPSG---AFYVLMDTSPIAPDEV 335 (385)
T ss_dssp -T-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSB---TTEEEEECTTTCSSHH
T ss_pred -c-cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEEEEEecCCCCCCHH
Confidence 1 113344444445566653 3456788889999999999999998 5 666554432 334455554 34667
Q ss_pred HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
++.+.|. ||.+.+|..|.. .+++||+++ ++++++++++++|.++++
T Consensus 336 ~l~~~l~~~gv~v~~g~~f~~-------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 336 RAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp HHHHHHHHTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred HHHHHHHHCCeEEecccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 7877775 999999865532 278999998 689999999998887653
No 49
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=2.9e-32 Score=259.01 Aligned_cols=323 Identities=14% Similarity=0.148 Sum_probs=247.0
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
.+++.+++++.+.+..+. +++. +...+...+...++++.+++++|.+ +.++++||++|+..++.++. ++|
T Consensus 78 ~~~~~v~~a~~~~~~~~~~~~~~---~~~~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~----~~g 148 (427)
T 2w8t_A 78 TFDPDVIAAGKEALEKFGSGTCG---SRMLNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLA----GKG 148 (427)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCS---CTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhc----CCC
Confidence 367999999999987632 2222 1122222357789999999999986 67777888889999888876 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
|+|+++.++|+++...+... |.+++.++. +|+++|++++++ ++++|++++++||+|.+.|+++|+++|
T Consensus 149 d~vl~~~~~h~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~ 220 (427)
T 2w8t_A 149 EYVILDADSHASIYDGCQQG---NAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVA 220 (427)
T ss_dssp CEEEEETTCCHHHHHHHHHS---CSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHH
T ss_pred CEEEECCcccHHHHHHHHHc---CCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHH
Confidence 99999999999999887766 889888874 589999999976 789999999999999999999999999
Q ss_pred HhcCcEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccC
Q psy8850 163 RSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
++||+++|+|++|+.+... +++. .++|+++.|++|.+|+.| |+++++++..+.+...... . ...
T Consensus 221 ~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l~~~~~~----~-~~~ 293 (427)
T 2w8t_A 221 KKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAVRLACRP----Y-IFT 293 (427)
T ss_dssp HHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGGGGTCHH----H-HSS
T ss_pred HHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHHHHhccc----c-ccc
Confidence 9999999999999976543 2332 257999999999777776 9999988776665443111 0 112
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC-
Q psy8850 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK- 311 (397)
Q Consensus 234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~- 311 (397)
++.+...++++.++++.+. .++++.+++.++++++.+.|++ + ++.+..+. ..+.++++.+++ .+..++...|.
T Consensus 294 ~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 368 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKA-M-GFRLGTET--CDSAIVAVMLEDQEQAAMMWQALLD 368 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSS--CCSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC--CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4566677777777888754 3577889999999999999998 5 77666332 124577777764 23556777765
Q ss_pred -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
||.+.++..+.. +.+.+++||+++..++++++++++++|+++++++.+
T Consensus 369 ~Gi~v~~~~~~~~----------------~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 369 GGLYVNMARPPAT----------------PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp TTEECEEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEeeeCCCCC----------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 899888754332 112378999999989999999999999999877654
No 50
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=8.6e-33 Score=259.52 Aligned_cols=322 Identities=13% Similarity=0.072 Sum_probs=235.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++|+.+.+++.+.+.... . .|.......+....+.+.+.+.+|+ ++++|++|+|+++|+.+++.++. ++
T Consensus 43 ~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~ 113 (388)
T 1j32_A 43 NTPKHIVEAAKAALEQGK----T-RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----EP 113 (388)
T ss_dssp CCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CT
T ss_pred CCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc----CC
Confidence 357899999998885411 1 2222112234444455555555564 56789999999999999999886 78
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 160 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~ 160 (397)
||+|+++.++|+++...+... |.+++.+|.+. ++.+|+++|++++++++++|++++++||||.++| +++|++
T Consensus 114 gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~ 190 (388)
T 1j32_A 114 GDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQ 190 (388)
T ss_dssp TCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCEEEEcCCCChhHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 999999999999998877665 99999999874 5678999999999999999999999999999976 789999
Q ss_pred HHHhcCcEEEEecccccCcc----ccccCc-----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850 161 LCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~ 229 (397)
+|++||+++|+|++|+.+.. ..++.. .+.|+++.|+||.+|+.| +|+++++++..+.+......
T Consensus 191 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~----- 265 (388)
T 1j32_A 191 VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGH----- 265 (388)
T ss_dssp HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHT-----
T ss_pred HHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhh-----
Confidence 99999999999999985332 111111 357899999999777666 89999887655444433221
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHH
Q psy8850 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLL 307 (397)
Q Consensus 230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 307 (397)
...+ .+.....+..++++...+++++..+++.++++++.+.|++ ++++.+..+.. +.++++.++ +.+..++.
T Consensus 266 -~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 339 (388)
T 1j32_A 266 -STSN-VCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDG---AFYMFPSIAKTGRSSLDFC 339 (388)
T ss_dssp -TTCS-CCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCB---TTEECCBCGGGTCCHHHHH
T ss_pred -cccC-CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCe---eEEEEEecCCCCCCHHHHH
Confidence 1122 2333344444556533445778889999999999999998 77876654432 233344454 34667787
Q ss_pred HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+.|. ||.+.+|..|.. .+++|++++ ++++++++++++|+++++++
T Consensus 340 ~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 340 SELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEeChhhhCC-------------------CCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 7763 899998865432 278999997 58999999999999988764
No 51
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=4.1e-33 Score=262.59 Aligned_cols=321 Identities=14% Similarity=0.107 Sum_probs=243.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
+++.+.+++.+.+.... +... .+.......+...++++.+++++|.+ ++++++|+++|+.+++.++. ++||+
T Consensus 58 ~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~~----~~gd~ 129 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKYG-TGCA-GSRFLNGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCLM----GRNDY 129 (398)
T ss_dssp GCHHHHHHHHHHHHHHC-SCCC-SBTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHSS----CTTCE
T ss_pred CCHHHHHHHHHHHHHcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCE
Confidence 78999999999886532 1111 12222223467888999999999974 89999999999999999987 79999
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRS 164 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~ 164 (397)
|+++.++|+++...+... |.+++.+|. +|++++++++++ ++++|++++++||||.+.|+++|.++|++
T Consensus 130 V~~~~p~~~~~~~~~~~~---g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~ 201 (398)
T 3a2b_A 130 ILLDERDHASIIDGSRLS---FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE 201 (398)
T ss_dssp EEEETTCCHHHHHHHHHS---SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHc---CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence 999999999998887766 999999986 489999999987 78999999999999999999999999999
Q ss_pred cCcEEEEecccccCcc---ccccCc-c----cccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850 165 KGVIFHCDAAQAVGKI---DINIQN-Y----KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236 (397)
Q Consensus 165 ~gi~livD~a~~~~~~---~~~~~~-~----~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (397)
||+++|+|++|+.+.. ...+.. + ++|+++.|+||.+|+.| |+++++++..+.+...... ....+++
T Consensus 202 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~-----~~~~~~~ 275 (398)
T 3a2b_A 202 FDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLKHNARS-----VMFSASM 275 (398)
T ss_dssp HTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHHHHCHH-----HHSSBCC
T ss_pred cCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHHHhccc-----ceecCCC
Confidence 9999999999985532 111111 1 26999999999878877 9999987655544332110 0122345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--Cc
Q psy8850 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--DI 313 (397)
Q Consensus 237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~i 313 (397)
+..+.++..++++.. +.++++.+++.++++++.+.|++ + ++.+..+. +.++++.++. .+..++.+.|. ||
T Consensus 276 ~~~~~a~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----g~~~~~~~~~~~~~~~l~~~l~~~gi 348 (398)
T 3a2b_A 276 TPASVASTLKALEII-QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLGATE----SPILPIFIRSNEKTFWVTKMLQDDGV 348 (398)
T ss_dssp CHHHHHHHHHHHHHH-HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBCSCC----SSEEEEECCCHHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcCCCC----CCEEEEEcCCHHHHHHHHHHHHHCCc
Confidence 555555555777764 34667889999999999999998 5 66554332 4566777753 24566777765 89
Q ss_pred EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
.+.+|..|.. +...+++||+++..++++++++++++|++++++++
T Consensus 349 ~v~~~~~~~~----------------~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 349 FVNPVVSPAV----------------PAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp ECEEECTTTS----------------CGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred EEEeeCCCCC----------------CCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9998865542 01247899999988899999999999999987653
No 52
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=6.3e-33 Score=262.88 Aligned_cols=325 Identities=13% Similarity=0.089 Sum_probs=241.2
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------------CCCCcEEEeCChhHHHHH
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESNNL 73 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~i~~~~g~t~a~~~ 73 (397)
..++++.+++++.+.+.... .. .|. ......++++.++++++ +++++|++++|+++|+.+
T Consensus 48 ~~~~~~~v~~a~~~~~~~~~---~~-~y~----~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~ 119 (416)
T 1bw0_A 48 NLLTSAAQIKKLKEAIDSQE---CN-GYF----PTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILM 119 (416)
T ss_dssp CSCCCHHHHHHHHHHHHTTC---SS-SCC----CTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhCCc---cC-CcC----CCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHH
Confidence 35678999999999886521 01 121 11235677888888887 667899999999999999
Q ss_pred HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (397)
Q Consensus 74 ~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~ 151 (397)
++.++. ++|++|+++.++|+++...+... |.+++.+|.++ ++.+|+++|+++++++++++++++++||||.
T Consensus 120 ~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~ 192 (416)
T 1bw0_A 120 AITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 192 (416)
T ss_dssp HHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred HHHHhC----CCCCEEEEcCCCcHhHHHHHHHc---CcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCc
Confidence 999886 78999999999999998776665 99999998864 3568999999999989999999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEecccccCc--------cccccCcc---cccEEEeccccccCCCC--ceEEEEecC--
Q psy8850 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK--------IDINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRN-- 213 (397)
Q Consensus 152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~--------~~~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~~-- 213 (397)
++| +++|+++|++||++||+|++|+... ...++..+ +.++++.|++|.++.+| +|+++++++
T Consensus 193 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~ 272 (416)
T 1bw0_A 193 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 272 (416)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchh
Confidence 999 8899999999999999999998522 11122222 23578899999655445 799998874
Q ss_pred CCCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292 (397)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 292 (397)
....+...... ......+.+.....++.++++.. .+++++..++++++++++.+.|++ ++++.+..+.. +.
T Consensus 273 ~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~ 344 (416)
T 1bw0_A 273 NGPSFLEGLKR----VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRG---AM 344 (416)
T ss_dssp SCHHHHHHHHH----HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCB---TT
T ss_pred hHHHHHHHHHH----HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eE
Confidence 44333211100 00112345666667776777642 446788889999999999999998 77887664432 34
Q ss_pred eEEEEecC------CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHH
Q psy8850 293 NLNISFNF------IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 363 (397)
Q Consensus 293 ~~~~~~~~------~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~ 363 (397)
++++.++. .+..++...| . ||.+.+|..|.. .+++||+++ ++++++++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~iRis~~--~~~e~l~~~l 403 (416)
T 1bw0_A 345 YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRLTTT--RPVEVYREAV 403 (416)
T ss_dssp EEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECC--SCHHHHHHHH
T ss_pred EEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-------------------CCeEEEEec--CCHHHHHHHH
Confidence 55666642 3566777765 2 999998865532 378999996 5899999999
Q ss_pred HHHHHHHHHHH
Q psy8850 364 KLLKMKVKKLR 374 (397)
Q Consensus 364 ~~l~~~~~~~~ 374 (397)
++|.+++++.+
T Consensus 404 ~~l~~~l~~~~ 414 (416)
T 1bw0_A 404 ERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHHHHB
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 53
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=7.2e-33 Score=259.50 Aligned_cols=321 Identities=12% Similarity=0.102 Sum_probs=242.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++|+.+.+++.+.+..... .|.. ...+...++++.+++.+| +++++|++|+|+++|+++++.++. ++
T Consensus 37 ~~~~~v~~a~~~~~~~~~~-----~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~----~~ 105 (383)
T 3kax_A 37 EVPQPIQTALKKRIEHPIF-----GYTL--PPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFT----KE 105 (383)
T ss_dssp CCCHHHHHHHHHHHHSCCC-----CCCC--CCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHC----CT
T ss_pred CCCHHHHHHHHHHHhcCCC-----CCCC--CCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhC----CC
Confidence 5689999999999875110 1111 134567888899999998 667789999999999999999887 78
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC---CCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIG 159 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~---~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i~ 159 (397)
||+|+++.++|+++...+... |.+++.+|.+.+ +.+|++++++++++++++|++++++||||.++|. ++|+
T Consensus 106 gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~ 182 (383)
T 3kax_A 106 NESVLVQPPIYPPFFEMVTTN---NRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLG 182 (383)
T ss_dssp TCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred CCEEEEcCCCcHHHHHHHHHc---CCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 999999999999998887766 999999998743 3489999999998899999999999999999984 5666
Q ss_pred HHHHhcCcEEEEecccccCcc----ccccCcc-----cccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCc
Q psy8850 160 ELCRSKGVIFHCDAAQAVGKI----DINIQNY-----KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGH 227 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~~~~~----~~~~~~~-----~~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~ 227 (397)
++|++||+++|+|++|+.... ..++..+ +.++++.|++|.+|+.| +|+++++ ++..+.+......
T Consensus 183 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--- 259 (383)
T 3kax_A 183 SLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYR--- 259 (383)
T ss_dssp HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH---
T ss_pred HHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhh---
Confidence 779999999999999985321 1222222 45588999999655334 6888874 4444444332211
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES 305 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 305 (397)
...++++...+.++.++++...+.++++.+++.++++++.+.|++.++++.+..+.. ...+++.++. .+..+
T Consensus 260 ---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 333 (383)
T 3kax_A 260 ---QGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEG---SFLLWIDCSALNLSQDE 333 (383)
T ss_dssp ---TTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSB---SSEEEEECGGGCCCHHH
T ss_pred ---cccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCc---eEEEEEEccccCCCHHH
Confidence 112356666777766777655556788899999999999999987567887775543 3444567763 57778
Q ss_pred HHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 306 LLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 306 ~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
+...|. ||.+.+|..|... ..+++||+++ .+++++++++++|++++
T Consensus 334 ~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 334 RTKLLEEKGKIIVEPGEKYGLG-----------------GEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp HHHHHHHTSCEECEESGGGCTT-----------------CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEeECchhhcCC-----------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 887773 8999998766541 2489999998 48999999999998875
No 54
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=1.6e-33 Score=262.78 Aligned_cols=308 Identities=16% Similarity=0.135 Sum_probs=232.5
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHFY 82 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~~ 82 (397)
+|+.+.+++.+.+.... . .|.. .....++++.++++++ ++++++++++|+++|+.+++.++.
T Consensus 43 ~~~~v~~a~~~~~~~~~----~-~y~~----~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--- 110 (370)
T 2z61_A 43 TPKPIVDEGIKSLKEGK----T-HYTD----SRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII--- 110 (370)
T ss_dssp CCHHHHHHHHHHHHTTC----C-SCCC----TTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHcCc----c-CCCC----CCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc---
Confidence 57899999998886411 1 1211 1123456666666654 566789999999999999999886
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
++||+|++++++|+++...+... |.+++.+| +|+++|++++++++++|++++++||||.++|.+ |.++|
T Consensus 111 -~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~ 179 (370)
T 2z61_A 111 -DDGDEVLIQNPCYPCYKNFIRFL---GAKPVFCD------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFA 179 (370)
T ss_dssp -CTTCEEEEESSCCTHHHHHHHHT---TCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHH
T ss_pred -CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeC------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHH
Confidence 78999999999999998887666 99999888 689999999998999999999999999999999 99999
Q ss_pred HhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850 163 RSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
++||+++|+|++|+.+.. +.++.. .+.|+++.|+||.+|++| +|+++++++..+.+...... ..
T Consensus 180 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-------~~ 252 (370)
T 2z61_A 180 YENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQN-------LF 252 (370)
T ss_dssp HHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH-------HT
T ss_pred HHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhh-------cc
Confidence 999999999999985432 222222 367899999999777556 79999887655554433221 12
Q ss_pred CCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850 234 GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK- 311 (397)
Q Consensus 234 ~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 311 (397)
++.+.....++.++++. ..+++++..+++.++++++.+.|++ + ++.+..+.. +.++++.++. +..++.+.|.
T Consensus 253 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~~ 326 (370)
T 2z61_A 253 ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVNNPIG---AYYVFPNIGE-DGREFAYKLLK 326 (370)
T ss_dssp SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCCCCCB---TTEECCBCSS-CHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCc---ceEEEEecCC-CHHHHHHHHHH
Confidence 24555666666677765 4556788899999999999999998 5 665544322 3344556654 6677777763
Q ss_pred --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
||.+.+|..|.. ...+++||+++ ++++++++++++|+++++
T Consensus 327 ~~gi~v~~g~~f~~-----------------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 327 EKFVALTPGIGFGS-----------------KGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHCEECEEGGGGCG-----------------GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred hCCEEEeCchhhCC-----------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 899998865532 12378999999 589999999999998764
No 55
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-33 Score=264.39 Aligned_cols=339 Identities=14% Similarity=0.101 Sum_probs=238.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPR-EIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~-~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++++.+.+++.+.+... .. .|.......+..+.+.+.+.+.+|. +++ +|++|+|+++|+.+++.++. +
T Consensus 38 ~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~----~ 108 (411)
T 2o0r_A 38 DGPPKMLQAAQDAIAGG----VN-QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV----E 108 (411)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc----C
Confidence 46789999999988651 11 2222212233444445555555574 566 89999999999999999886 7
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC---CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEI 158 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i 158 (397)
+||+|+++.++|+++...+... |.+++.+|.+. ++.+|+++|++++++++++|++++++||||.++|. ++|
T Consensus 109 ~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i 185 (411)
T 2o0r_A 109 PGSEVLLIEPFYDSYSPVVAMA---GAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAI 185 (411)
T ss_dssp TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHc---CCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence 8999999999999998777665 99999999864 35689999999999999999999999999999884 889
Q ss_pred HHHHHhcCcEEEEecccccCcc----ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~ 228 (397)
+++|++||+++|+|++|+.+.. +.++.. .+.|+++.|+||.+|+.| +|+++++++..+.+......
T Consensus 186 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~---- 261 (411)
T 2o0r_A 186 AEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQY---- 261 (411)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHH----
T ss_pred HHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhh----
Confidence 9999999999999999985432 112221 367999999999777556 89999886555444332211
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGES 305 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 305 (397)
...+.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+..+.. +.++++.++. .+..+
T Consensus 262 ---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~ 333 (411)
T 2o0r_A 262 ---LSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE-I-GFAVHDSYG---TYFLCADPRPLGYDDSTE 333 (411)
T ss_dssp ---HTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCCB---SSEEEEECGGGTCCCHHH
T ss_pred ---ccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCCe---eEEEEEecCCCCCCCHHH
Confidence 11223444555566777655556788899999999999999998 5 777665432 4466777764 45667
Q ss_pred HHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q psy8850 306 LLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378 (397)
Q Consensus 306 ~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 378 (397)
+...|. ||.+.+|..|......++..+. ....+++||+++. +++++++++++|++++++.+...|
T Consensus 334 ~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~------~~~~~~iRis~~~--~~e~i~~~~~~l~~~~~~~~~~~~ 401 (411)
T 2o0r_A 334 FCAALPEKVGVAAIPMSAFCDPAAGQASQQA------DVWNHLVRFTFCK--RDDTLDEAIRRLSVLAERPATGVP 401 (411)
T ss_dssp HHHHHHHHHSEECEEGGGGSCCC--------------CCGGGCEEEECCS--CHHHHHHHHHHHGGGGC-------
T ss_pred HHHHHHHhCCEEEcChhhhCCCccccccccc------cCCCCeEEEEecC--CHHHHHHHHHHHHHHHhccCcCCC
Confidence 777652 9999998776431111111110 0124789999974 899999999999988766655443
No 56
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=2.5e-33 Score=267.65 Aligned_cols=326 Identities=15% Similarity=0.103 Sum_probs=240.2
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC-CCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA-DPREIIWTSGATESNNLAIKGAAHFYK 83 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~ 83 (397)
+++.+.+++.+.+.... .....|.......++++.+++++ |. ++++|++|+|+++|+.+++.++.
T Consensus 92 p~~~v~~a~~~~l~~~~------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~---- 161 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYA------DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL---- 161 (448)
T ss_dssp CHHHHHHHHHHHHHHSH------HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhhh------HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc----
Confidence 56789999888876411 00011111123456667777666 88 67789999999999999999987
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----C--CceEE-EEecccCccccccc--
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVIQP-- 154 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~--~~~~v-~~~~~~~~tG~~~~-- 154 (397)
++||+|++..++|+++...+... |.+++.+|.++++ +|+++|+++++ + ++++| ++++++||||.++|
T Consensus 162 ~~Gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~ 237 (448)
T 3aow_A 162 NPGDIVVVEAPTYLAALQAFNFY---EPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNED 237 (448)
T ss_dssp CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHH
Confidence 78999999999999998877665 9999999988765 89999999997 6 78987 57899999999998
Q ss_pred -HHHHHHHHHhcCcEEEEecccccCcc----ccccC---cccccEEEeccccccCCCC--ceEEEEecCCCCcccccccc
Q psy8850 155 -ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQ---NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (397)
Q Consensus 155 -l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~---~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~ 224 (397)
+++|+++|++||++||+|++|+.+.. ..++. ..+.++++.|++|.++ +| +|+++++++..+.+......
T Consensus 238 ~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~ 316 (448)
T 3aow_A 238 RRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQS 316 (448)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHH
Confidence 46899999999999999999985432 11222 2246789999999666 45 79999987665555432211
Q ss_pred CCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEecC-
Q psy8850 225 GGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNF- 300 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 300 (397)
... +.+.....++.++++.. .++++++.++++++++++.+.|++.++ ++.+..+.. +.++++.++.
T Consensus 317 ------~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~---g~~~~v~~~~~ 386 (448)
T 3aow_A 317 ------TDL-CTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEG---GMFIWVTLPDG 386 (448)
T ss_dssp ------HHS-SCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSB---SSEEEEECSTT
T ss_pred ------hcC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCc---cEEEEEEcCCC
Confidence 112 23445555555666642 446788889999999999999987456 577654433 4566777763
Q ss_pred CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
.+..++...|. ||.+.+|..|.+. ....+++||+++. .++++|++++++|.+++++..+
T Consensus 387 ~~~~~l~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 387 IDSKKMLERAIKKGVAYVPGEAFYAH---------------RDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp CCHHHHHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCcEEEcchhhcCC---------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 46677877775 9999999766541 0124789999986 4899999999999999877643
No 57
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.7e-33 Score=265.98 Aligned_cols=327 Identities=14% Similarity=0.106 Sum_probs=243.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIWTSGATESNNLAIKGAAHFYK 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~-~~i~~~~g~t~a~~~~l~~l~~~~~ 83 (397)
.++++.+++++.+.+...... .|.......+...++++.+++++|.+ + +++++++|+++|+..++.++.
T Consensus 52 ~~~~~~v~~a~~~~~~~~~~~----~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~---- 123 (407)
T 3nra_A 52 HEPTPGAFDLFSAGVQSGGVQ----AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV---- 123 (407)
T ss_dssp SCCCTTHHHHHHHHHHHTHHH----HSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC----
T ss_pred CCCcHHHHHHHHHHHhcCCCC----CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC----
Confidence 367899999999988642100 11112233567788899999999974 3 689999999999999999887
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc------CCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP------KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~------~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~--- 154 (397)
++||+|+++.++|+++...+... |.+++.+|. +.++.+|++++++++++++++|++++++||||.++|
T Consensus 124 ~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~ 200 (407)
T 3nra_A 124 ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEE 200 (407)
T ss_dssp CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCcccchHHHHHHc---CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHH
Confidence 78999999999999998887776 999999998 366789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEecccccCcc----cccc-----CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~----~~~~-----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~ 223 (397)
+++|+++|++||+++|+|++|+.+.. ...+ ...+.++++.|++|.+|+.| +|+++++++....+.....
T Consensus 201 l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~ 280 (407)
T 3nra_A 201 IGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQA 280 (407)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHh
Confidence 88999999999999999999985321 1111 12356799999999666334 7998887665554443321
Q ss_pred cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--C
Q psy8850 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I 301 (397)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 301 (397)
. +.. +.+.....++.++++...+.+++..+++.++++++.+.|++ ++++.+..+.. +.++++.++. .
T Consensus 281 ~------~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~~~~~~~~~~ 349 (407)
T 3nra_A 281 I------VSL-RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFARTPQA---GSYLFPRLPKLAV 349 (407)
T ss_dssp H------HTS-SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCCCCSB---SSEECCBCCCBSS
T ss_pred h------hcc-CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCe---eEEEEEeCCCCCC
Confidence 1 111 23333444443444322234677788899999999999998 77876654432 3444555553 4
Q ss_pred ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
+..++...|. ||.+.+|..|.+ ...+++||+++. ++++|++++++|++++++++
T Consensus 350 ~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 350 APAEFVKILRLQAGVVVTPGTEFSP-----------------HTADSVRLNFSQ--DHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp CHHHHHHHHHHHHCEECEEGGGTCT-----------------TCTTBEEEECCS--CHHHHHHHHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHHHhh
Confidence 6778887773 999999877654 124899999985 89999999999999998764
No 58
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4e-33 Score=263.91 Aligned_cols=325 Identities=14% Similarity=0.120 Sum_probs=237.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CC-CcEEEeCChhHHHHHHHHHhHhh
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DP-REIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~-~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
+++.+.+++.+.+.... .. .|. ......++++.+++++ |. ++ ++|++|+|+++|+.+++.++.
T Consensus 51 ~~~~v~~a~~~~~~~~~---~~-~y~----~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~-- 120 (412)
T 2x5d_A 51 TPPHIVEKLCTVAQRED---TH-GYS----TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL-- 120 (412)
T ss_dssp CCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhCCC---CC-CCC----CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--
Confidence 57899999888775420 00 111 1123456667777766 85 55 689999999999999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-C-CCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-G-LITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++||+|+++.++|+++...+... |.+++.+|.+++ + .+|++++++++++++++|++++++||||.++| ++
T Consensus 121 --~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~ 195 (412)
T 2x5d_A 121 --DHGDTILVPNPSYPIHIYGAVIA---GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFE 195 (412)
T ss_dssp --CTTCEEEEEESCCHHHHHHHHHH---TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHH
Confidence 78999999999999999888776 999999998764 3 37899999999989999999999999999988 57
Q ss_pred HHHHHHHhcCcEEEEecccccCcc----ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~ 226 (397)
+|+++|++||+++|+|++|+.+.. ..++.. .+.++++.|+||.+|+.| +|+++++++....+.....
T Consensus 196 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~--- 272 (412)
T 2x5d_A 196 RVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKS--- 272 (412)
T ss_dssp HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHh---
Confidence 899999999999999999985432 122222 367899999999666445 7999998765554443221
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CC---C
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FI---E 302 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~ 302 (397)
....+.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+..+.. +.++++.++ +. +
T Consensus 273 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~ 343 (412)
T 2x5d_A 273 ----YHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVENPKA---SMYVWAKIPEPYAHLG 343 (412)
T ss_dssp ----HHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCCCCSB---SSEEEEECCTTTGGGC
T ss_pred ----hhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEecCCCe---eeEEEEEcCCccCCCC
Confidence 112344555566665677644456788899999999999999998 5 655543322 345667775 33 5
Q ss_pred hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8850 303 GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPL 379 (397)
Q Consensus 303 ~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 379 (397)
..++...| . ||.+.+|..|.. ...+++||+++. +++++++++++|.++++++..++++
T Consensus 344 ~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~~~~~ 404 (412)
T 2x5d_A 344 SLEFAKKLLQDAKVSVSPGIGFGD-----------------YGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGLLSPQ 404 (412)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCCcChH
Confidence 67787776 2 999999876542 124789999996 7999999999999999988877765
No 59
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=8.8e-33 Score=262.24 Aligned_cols=321 Identities=15% Similarity=0.165 Sum_probs=245.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++++.+++++.+.+.... +.++....+...++++.+++.++ +++++|++++|+++|++++++++. ++
T Consensus 74 ~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~----~~ 142 (421)
T 3l8a_A 74 LPVPEIKEAIINYGREHI-------FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS----EK 142 (421)
T ss_dssp CCCHHHHHHHHHHHHHCC-------SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred CCCHHHHHHHHHHHhcCC-------cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc----CC
Confidence 568999999999887511 11111225677888899999988 567789999999999999999887 78
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC--CCCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI 158 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i 158 (397)
|++|++..+.|+++...+... |.+++.+|.+ .+ +.+|+++|+++++ +++++|++++++||+|.+.| +++|
T Consensus 143 gd~Vi~~~~~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l 219 (421)
T 3l8a_A 143 GDAVLINSPVYYPFARTIRLN---DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKI 219 (421)
T ss_dssp EEEEEEEESCCHHHHHHHHHT---TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHC---CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHH
Confidence 999999999999998887776 9999999986 33 3689999999998 78999999999999998854 7889
Q ss_pred HHHHHhcCcEEEEecccccCcc----ccccCc-----ccccEEEeccccccCCC--CceEEEEe-cCCCCccccccccCC
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPK--GIGALYIR-RNPRTRIEAQIHGGG 226 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~--g~g~~~~~-~~~~~~~~~~~~~~~ 226 (397)
+++|++||+++|+|++|+.... ...+.. .+.++++.|++|.+|+. ++|+++++ ++....+......
T Consensus 220 ~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~-- 297 (421)
T 3l8a_A 220 AELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLA-- 297 (421)
T ss_dssp HHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH--
T ss_pred HHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHh--
Confidence 9999999999999999974221 111111 25568899999955533 36998887 4444444332211
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE 304 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 304 (397)
...++.+...+.++.++++...++++++.+++.++++++.+.|++ ++++.+..+.. ..++++.++. .+..
T Consensus 298 ----~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~~~~~---~~~~~v~~~~~~~~~~ 369 (421)
T 3l8a_A 298 ----NNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEG---TYLVWLDFSAYAIAQP 369 (421)
T ss_dssp ----TTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEECCSB---SSEEEEECGGGTCCTT
T ss_pred ----cccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEeCCCe---eEEEEEeccccCCCHH
Confidence 223456777777777888765566888999999999999999998 58888876544 3444577764 4667
Q ss_pred HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
++...|. ||.+.+|..|.. .+.+++||+++ +++++|++++++|+++++
T Consensus 370 ~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 370 QLSEKLQNEAKVVLNDGAHFGK-----------------EGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCEEEECchhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 7877773 899998876543 12489999998 489999999999998764
No 60
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.1e-31 Score=259.90 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=242.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~ 79 (397)
||+..+++.++.+.+++...... +....+..+........++++++++++|+++ +.+++|+|||+|+.+++.++.
T Consensus 104 l~~~~~~~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar 179 (497)
T 2qma_A 104 IAHLHTPPLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLAR 179 (497)
T ss_dssp CSSSCCCCBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHH
T ss_pred eEeCCCCCcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHH
Confidence 57788888889998888666542 2111233344556677778999999999975 689999999999999998753
Q ss_pred hhhc---------cC------CC-EEEEcCCCChhhHHHHHHHhhCCc-EEEEeccCCCCCCCHHHHHHHhcCC------
Q psy8850 80 HFYK---------KR------GK-HIITVQTEHKSVLDSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICSD------ 136 (397)
Q Consensus 80 ~~~~---------~~------g~-~vl~~~~~~~s~~~~~~~~~~~g~-~v~~v~~~~~~~~d~~~l~~~i~~~------ 136 (397)
..+. .+ ++ +|+++..+|+++..++..++. |. +++.+|.++++.+|+++|+++++++
T Consensus 180 ~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~ 258 (497)
T 2qma_A 180 DWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLI 258 (497)
T ss_dssp HHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-CcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCc
Confidence 2111 11 35 899999999999988887732 33 7999999988999999999999763
Q ss_pred ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc----cCcc-cccEEEecccc-ccCCCCceEEEE
Q psy8850 137 TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN----IQNY-KVDLMSFSAHK-IYGPKGIGALYI 210 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~----~~~~-~~d~~~~s~~K-~~g~~g~g~~~~ 210 (397)
+.+|++++++|++|.+.|+++|+++|++||+++|+|++|+.+..+.+ +..+ ++|++++|+|| +++|.++|++++
T Consensus 259 ~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~ 338 (497)
T 2qma_A 259 PFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLV 338 (497)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEE
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEEE
Confidence 34889999999999999999999999999999999999997766444 2233 68999999999 777888999999
Q ss_pred ecCC-CCcccc---ccccCCcc-cc---cc-CCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850 211 RRNP-RTRIEA---QIHGGGHE-YG---LR-SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEI 280 (397)
Q Consensus 211 ~~~~-~~~~~~---~~~~~~~~-~~---~~-~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (397)
+++. ...+.. ++...... .. +. .++.. ...+++.++++.+ .+++.++.++..++++++.+.|++ ++++
T Consensus 339 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~ 416 (497)
T 2qma_A 339 NDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKR-FDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT-NDQF 416 (497)
T ss_dssp SCGGGGGGGCC--------------------CCSCC-CTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT-CTTE
T ss_pred eCHHHHHHhcCCchhcCCccccCCCccccCCCCCCc-hhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh-CCCe
Confidence 8654 222211 00000000 00 00 00111 1123444566644 457888999999999999999998 8899
Q ss_pred EEeCCCCCCCCceEEEEecCCC--h----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-C
Q psy8850 281 YINGDMNNRIPHNLNISFNFIE--G----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-G 351 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~ 351 (397)
.++.++. ..++.|.+.... . .++...+. |+.+.++.. ..+..++|+++ +
T Consensus 417 ~~~~~~~---~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~-------------------~~g~~~lRis~~~ 474 (497)
T 2qma_A 417 ELLAEPS---LSTVLFRATHETADLDELNKALRLEALTRGIAVLGETI-------------------VDGKTALKFTILN 474 (497)
T ss_dssp EECSCCS---SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEE-------------------ETTEEEEEEECCC
T ss_pred EEEcCCC---ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeE-------------------ECCEEEEEEEecC
Confidence 8876543 456677765321 1 23333443 544432210 01236899998 7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy8850 352 RFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 352 ~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
..+++++|+++++.|+++++++
T Consensus 475 ~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 475 PCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999987653
No 61
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-33 Score=265.80 Aligned_cols=319 Identities=13% Similarity=0.125 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++++.+.+++.+.+.... . .|... ....++++.+++++ | +++++|++|+|+++|+.+++.++.
T Consensus 54 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-- 122 (406)
T 1xi9_A 54 QPPEHMKEAYCKAIKEGH----N-YYGDS----EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-- 122 (406)
T ss_dssp CCCHHHHHHHHHHHHTTC----C-SCCCT----TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhcCC----C-CCCCC----CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--
Confidence 467899999998886421 0 12211 12344555555555 3 566789999999999999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++||+|+++.++|+++...+... |.+++.+|.++ ++.+|+++|++++++++++|++++++||||.++| ++
T Consensus 123 --~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~ 197 (406)
T 1xi9_A 123 --DPGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLE 197 (406)
T ss_dssp --CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHH
Confidence 78999999999999998877665 99999999874 4568999999999999999999999999999987 88
Q ss_pred HHHHHHHhcCcEEEEecccccCcc---ccccCc--ccc-cEEEeccccccCCCC--ceEEE--Eec----CCCCcccccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN--YKV-DLMSFSAHKIYGPKG--IGALY--IRR----NPRTRIEAQI 222 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~--~~~-d~~~~s~~K~~g~~g--~g~~~--~~~----~~~~~~~~~~ 222 (397)
+|+++|++||+++|+|++|+.+.. ...+.. .+. |+++.|+||.+|+.| +|+++ .++ +..+.+....
T Consensus 198 ~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~ 277 (406)
T 1xi9_A 198 EILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLA 277 (406)
T ss_dssp HHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHH
Confidence 999999999999999999985432 112221 255 889999999776556 79998 665 3333332221
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec---
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--- 299 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 299 (397)
. .. .+.+.....++.++++...++++++.+++.++++++.+.|++ ++++.+..+.. +.++++.++
T Consensus 278 ~-------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~~~~~~~~~ 345 (406)
T 1xi9_A 278 R-------IR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKPQG---AFYIFPKIEVGP 345 (406)
T ss_dssp H-------HT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCCCB---SSEECCEECSCS
T ss_pred H-------hh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeecCCe---eEEEEEecCccC
Confidence 1 11 244555566666777533345778889999999999999998 77887654432 333444555
Q ss_pred CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 300 FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 300 ~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+.+..++.+.|. ||.+.+|..|.. ...+++||+++ ++++++++++++|+++++++
T Consensus 346 ~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 346 WKNDKEFVLDVLHNAHVLFVHGSGFGE-----------------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp CSSHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhcCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 346677777653 899998865532 12378999998 78999999999999998765
No 62
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.8e-32 Score=257.01 Aligned_cols=326 Identities=13% Similarity=0.102 Sum_probs=237.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++++.+.+++.+.+.... . .|... ..+..+.+.+.+.+.+| +++++|++|+|+++|+.+++.++. ++
T Consensus 44 ~~~~~v~~a~~~~~~~~~----~-~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~----~~ 112 (399)
T 1c7n_A 44 KNPPELIEGLKKYLDETV----L-GYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----KP 112 (399)
T ss_dssp CCCHHHHHHHHHHHHHCC----C-SSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CT
T ss_pred CCCHHHHHHHHHHHhcCC----C-CCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc----CC
Confidence 468899999999886411 1 22221 23334444444444457 567789999999999999999887 78
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCC--CCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNG--LITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI 158 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~--~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i 158 (397)
||+|++..++|+++...+... |.+++.+|.+ +++ .+|+++|+++++ +++++|++++++||||.++| +++|
T Consensus 113 gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i 189 (399)
T 1c7n_A 113 GDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI 189 (399)
T ss_dssp TCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCEEEEcCCCcHhHHHHHHHc---CCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHH
Confidence 999999999999998777655 9999999885 333 589999999998 68999999999999999999 8899
Q ss_pred HHHHHhcCcEEEEecccccCcc----ccccCc-----ccccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCC
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGG 226 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~ 226 (397)
+++|++||+++|+|++|+.... ..++.. .+.++++.|++|.+|+.| +|++++++ +....+......
T Consensus 190 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~-- 267 (399)
T 1c7n_A 190 KDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA-- 267 (399)
T ss_dssp HHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH--
T ss_pred HHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh--
Confidence 9999999999999999985321 222322 245688999999666445 69999874 344444332221
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE 304 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 304 (397)
+..++++.....++.++++...+++++..+++.++++++.+.|++.++++.+..+.. +.++++.++. .+..
T Consensus 268 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 340 (399)
T 1c7n_A 268 ----TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEG---TYLQWIDFRALKMDHK 340 (399)
T ss_dssp ----TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSB---SSEEEEECGGGCCCHH
T ss_pred ----cccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCc---eEEEEEEcccCCCCHH
Confidence 112345666666666777654456788889999999999999987456765554322 3344577764 4677
Q ss_pred HHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 305 SLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 305 ~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
++.+.| + ||.+.+|..|.+ ...+++||+++. +++++++++++|.++++++++
T Consensus 341 ~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 341 AMEEFMIHKAQIFFDEGYIFGD-----------------GGIGFERINLAA--PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp HHHHHHHHTTCCCCEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCEEEeCccccCC-----------------CCCCeEEEEecc--CHHHHHHHHHHHHHHHHHHHh
Confidence 787777 3 899998866542 124789999986 489999999999999988754
No 63
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=1.1e-33 Score=266.39 Aligned_cols=327 Identities=13% Similarity=0.125 Sum_probs=240.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
+++.+.+++.+.+..... ...+|.......++++.+++++|+++++|++++|+++|+.+++.++. ++|++
T Consensus 48 ~~~~v~~a~~~~~~~~~~------~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~----~~gd~ 117 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGE------VALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL----DEGSP 117 (397)
T ss_dssp CHHHHHHHHHHHHHHHHH------HHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTCE
T ss_pred CHHHHHHHHHHHHHhcch------hhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC----CCCCE
Confidence 568899999888764110 00011112245788999999999888899999999999999999886 78999
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEE-EEecccCcccccccH---HHHHHHHH
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILV-SVMLVNNEIGVIQPI---LEIGELCR 163 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v-~~~~~~~~tG~~~~l---~~i~~l~~ 163 (397)
|++..++|+++...+... |.+++.+|.++++ +|+++|++++++ ++++| ++++++||||.++|. ++|+++|+
T Consensus 118 Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~ 193 (397)
T 2zyj_A 118 VLLEAPSYMGAIQAFRLQ---GPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVM 193 (397)
T ss_dssp EEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHc---CCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHH
Confidence 999999999988776655 9999999987665 899999999986 78887 578999999999985 48999999
Q ss_pred hcCcEEEEecccccCcc----ccccCccc------ccEEEeccccccCC-CCceEEEEecCCCCccccccccCCcccccc
Q psy8850 164 SKGVIFHCDAAQAVGKI----DINIQNYK------VDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (397)
Q Consensus 164 ~~gi~livD~a~~~~~~----~~~~~~~~------~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (397)
+||+++|+|++|+.+.. +.++..++ .++++.|+||.+|+ .++|+++++++..+.+...... +.
T Consensus 194 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~------~~ 267 (397)
T 2zyj_A 194 ERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQG------AD 267 (397)
T ss_dssp HHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHH------HH
T ss_pred HcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHHh------hc
Confidence 99999999999985332 22233332 33889999996663 2379999886655444432211 11
Q ss_pred CCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEec-CCChHHHHHH
Q psy8850 233 SGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFN-FIEGESLLMA 309 (397)
Q Consensus 233 ~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 309 (397)
.++ +.....++.++++... +++++..+++.++++++.+.|++.++ ++.+..+.. +.++++.++ +.+..++.+.
T Consensus 268 ~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~ 343 (397)
T 2zyj_A 268 LHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG---GMFVWMELPKGLSAEGLFRR 343 (397)
T ss_dssp SSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB---SSEEEEECSTTCCHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc---cEEEEEEcCCCCCHHHHHHH
Confidence 233 4444555556665322 45778888999999999999987456 577654432 456677776 3466778777
Q ss_pred hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 310 IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 310 l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
|. ||.+.+|..|.+. ....+++||+++.. +++++++++++|.++++++.+
T Consensus 344 l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 344 ALEENVAFVPGGPFFAN---------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp HHHTTEEEEESGGGCTT---------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEechHHhcCC---------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 76 9999998766431 01247899999974 899999999999999987653
No 64
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=3.4e-32 Score=255.29 Aligned_cols=320 Identities=14% Similarity=0.071 Sum_probs=235.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++++.+.+++.+.+... .. .|.......+..+.+.+.+.+.+| ++++ +|++|+|+++|+.+++.++. +
T Consensus 43 ~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~ 113 (386)
T 1u08_A 43 DGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV----R 113 (386)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHHhh----cc-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC----C
Confidence 46789999999988641 11 222211223344444444444457 4577 89999999999999999886 7
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 160 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~ 160 (397)
+|++|+++.++|+++...+... |.+++.+|.+. ++.+|+++|++++++++++|++++++||||.++| +++|++
T Consensus 114 ~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~ 190 (386)
T 1u08_A 114 NGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQ 190 (386)
T ss_dssp TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHc---CCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHH
Confidence 8999999999999998877666 99999999875 5679999999999989999999999999999987 588999
Q ss_pred HHHhcCcEEEEecccccCcc----ccccC----cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850 161 LCRSKGVIFHCDAAQAVGKI----DINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 230 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~----~~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~ 230 (397)
+|++||+++|+|++|+.... ...+. ..+.|+++.|+||.+|+.| +|+++++++..+.+......
T Consensus 191 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~------ 264 (386)
T 1u08_A 191 AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQY------ 264 (386)
T ss_dssp HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHH------
T ss_pred HHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHh------
Confidence 99999999999999985221 11221 2367999999999777556 79999887655544432211
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHHH
Q psy8850 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLL 307 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 307 (397)
...+.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+..+.. +.++++.++. .+..++.
T Consensus 265 -~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~ 338 (386)
T 1u08_A 265 -LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-S-RLEILPCEG---TYFLLVDYSAVSTLDDVEFC 338 (386)
T ss_dssp -HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEECCCCB---SSEEEEECTTTCCSCHHHHH
T ss_pred -hccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc---eEEEEEecCCCCCCCHHHHH
Confidence 11234445555666677654456788899999999999999998 5 777664432 4566777765 3567777
Q ss_pred HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850 308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (397)
+.|. ||.+.+|..|... ....+++||+++. ++++|++++++|++
T Consensus 339 ~~l~~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~--~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 339 QWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFAK--KESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred HHHHHhCCEEEeCchHhCCC---------------CCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence 7552 9999988655431 0124789999984 89999999998864
No 65
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=8.8e-33 Score=263.59 Aligned_cols=322 Identities=14% Similarity=0.107 Sum_probs=240.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++++.+++++.+.+..... . .|.. .....++++.++++++ +++++|++|+|+++|+.+++.++..
T Consensus 57 ~~~~~v~~a~~~~~~~~~~---~-~y~~----~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~- 127 (437)
T 3g0t_A 57 PAPQIGIETEIQKLREGVA---S-IYPN----LDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR- 127 (437)
T ss_dssp CCCHHHHHHHHHHHHHTGG---G-SCCC----TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHhCCcC---c-CCCC----CCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhc-
Confidence 5689999999998874110 0 1111 1123556666666665 5677899999999999999998751
Q ss_pred hccCCC--EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHh-cCCceEEEEecccCccccccc---
Q psy8850 82 YKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQP--- 154 (397)
Q Consensus 82 ~~~~g~--~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~--- 154 (397)
.++|| +|+++.++|+++...+... |.+++.+|.++ ++.+|+++|++++ ++++++|++++++||||.++|
T Consensus 128 -~~~gd~~~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~ 203 (437)
T 3g0t_A 128 -THKNREYGTLFIDPGFNLNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEE 203 (437)
T ss_dssp -SCTTCSCCEEEEESCCHHHHHHHHHH---TCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHH
T ss_pred -CCCCCccEEEEeCCCcHhHHHHHHHc---CCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHH
Confidence 13788 9999999999999888877 99999999864 4468999999999 778999999999999999998
Q ss_pred HHHHHHHHHhcCcEEEEecccccCcc----c--------cccCc-ccccEEEeccccccCCCC--ceEEEEecCCCC-c-
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKI----D--------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRT-R- 217 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~----~--------~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~-~- 217 (397)
+++|+++|++||+++|+|++|+.... + .++.. .+.++++.|+||.+|+.| +|+++++++... .
T Consensus 204 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 283 (437)
T 3g0t_A 204 LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREY 283 (437)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBC
T ss_pred HHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhh
Confidence 66789999999999999999984221 1 12222 467799999999766444 799999876544 4
Q ss_pred ----------------cccccccCCccccccCCCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q psy8850 218 ----------------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE---MKEELKRILFLQKRLYNGLMESIE 278 (397)
Q Consensus 218 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~ 278 (397)
+.... .....+.+.....++.++++....+ ++++.+++.++++++.+.|++ +
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~- 354 (437)
T 3g0t_A 284 PDLEESFGRLRFGEALSSSAL-------YALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD-N- 354 (437)
T ss_dssp GGGHHHHSCSBHHHHHHTTHH-------HHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-T-
T ss_pred hcccccccccchhHHHHHHHH-------hhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH-c-
Confidence 22111 1123355666666666777765433 788999999999999999999 5
Q ss_pred cEEEe------CC-CCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850 279 EIYIN------GD-MNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349 (397)
Q Consensus 279 ~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (397)
++.+. .+ .. +.++++.+++.+..++.+.|. ||.+.++..|.. ..++++||+
T Consensus 355 g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~-----------------~~~~~iRis 414 (437)
T 3g0t_A 355 GFNIVYDKDGNEPLAD---GFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGS-----------------KRNEAMRIC 414 (437)
T ss_dssp TEEESSCEETTEECCS---SSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTC-----------------CCTTCEEEE
T ss_pred CCEEeccccCCCCCce---eEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCC-----------------CCCCEEEEE
Confidence 77776 22 22 456677777667888888886 899998866543 112779999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 350 IGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
++. .+++++++++++|++++++
T Consensus 415 ~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 415 TSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CSS-SCGGGHHHHHHHHHHHHHH
T ss_pred Eec-CCHHHHHHHHHHHHHHHhc
Confidence 995 5899999999999988753
No 66
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=2e-32 Score=257.91 Aligned_cols=325 Identities=14% Similarity=0.117 Sum_probs=231.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCC-CCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPA-SRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++++.+.+++.+.+.... +. ...|.......+..+.+.+.+.+.+| +++++|++|+|+++|+.+++.++. +
T Consensus 48 ~~~~~v~~a~~~~~~~~~--~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~----~ 121 (398)
T 3ele_A 48 PAPQIVNDTIKELVTDYD--SVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT----S 121 (398)
T ss_dssp CCCHHHHHHHHHHHHHSC--HHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcCC--ccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc----C
Confidence 568999999999886510 00 00111111223344555555555556 567789999999999999999987 7
Q ss_pred CC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHH
Q psy8850 85 RG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (397)
Q Consensus 85 ~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~ 159 (397)
+| |+|++..++|+++...+... |.+++.+|.++ ++.+|++++++++++++++|++++++||||.++| +++|+
T Consensus 122 ~g~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~ 198 (398)
T 3ele_A 122 DAYDEFITIAPYFPEYKVFVNAA---GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLS 198 (398)
T ss_dssp STTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 89 99999999999998887766 99999999975 5589999999999999999999999999999999 56777
Q ss_pred HHHHh------cCcEEEEecccccCc-----cccccCcccccEEEeccccccCCCC--ceEEEEecCCCCc--ccccccc
Q psy8850 160 ELCRS------KGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR--IEAQIHG 224 (397)
Q Consensus 160 ~l~~~------~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~--~~~~~~~ 224 (397)
++|++ ||+++|+|++|+... .+......+.++++.|+||.+|.+| +|+++++++.... +......
T Consensus 199 ~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 278 (398)
T 3ele_A 199 DLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCG 278 (398)
T ss_dssp HHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHH
T ss_pred HHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHH
Confidence 89999 999999999998422 2222233367799999999665334 8999998775542 1111100
Q ss_pred CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (397)
.. ........+.....++..+++. ....+++.++++++.+.|++ + ++.+..+.. +..+++.++..+..
T Consensus 279 ~~--~~~~~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~~ 346 (398)
T 3ele_A 279 AG--RALGYVCAPSLFQKMIVKCQGA-----TGDINAYKENRDLLYEGLTR-I-GYHCFKPDG---AFYMFVKALEDDSN 346 (398)
T ss_dssp HH--HHTTCCCSCHHHHHHHTTCTTC-----CCCHHHHHHHHHHHHHHHHH-H-TCCEECCSB---SSEEEEECSSSCHH
T ss_pred Hh--hhccccCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eEEEEEEcCCCCHH
Confidence 00 0000112333333333333331 11456778889999999988 4 666665433 44467777766777
Q ss_pred HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
++.+.|. ||.+.+|..|.. .+++||+++ ++++++++++++|.+++++++
T Consensus 347 ~~~~~l~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 347 AFCEKAKEEDVLIVAADGFGC-------------------PGWVRISYC--VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHTTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEeCccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 8887775 899999876643 379999997 589999999999999998765
No 67
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.5e-32 Score=258.09 Aligned_cols=322 Identities=15% Similarity=0.124 Sum_probs=231.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++|+.+++++.+.+.... .+|.......++++.+++++ | +++++|++|+|+++|+++++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-- 112 (391)
T 3h14_A 44 GAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-- 112 (391)
T ss_dssp CSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc--
Confidence 457889999998886411 11222223455666666665 4 567789999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++||+|++..++|+++...+... |.+++.+|.+.+ +.+|+++++++ ++++|++++++||||.++| ++
T Consensus 113 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~ 184 (391)
T 3h14_A 113 --DSGDRVGIGAPGYPSYRQILRAL---GLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMG 184 (391)
T ss_dssp --CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHH
Confidence 78999999999999998877766 999999999854 46799999877 7899999999999999998 78
Q ss_pred HHHHHHHhcCcEEEEecccccCcc---ccccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 230 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~ 230 (397)
+|+++|++||+++|+|++|+.... +..... .+.++++.|++|.+|+.| +|+++++++....+......
T Consensus 185 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~------ 258 (391)
T 3h14_A 185 ALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQN------ 258 (391)
T ss_dssp HHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHH------
T ss_pred HHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhh------
Confidence 899999999999999999984321 222222 256788999999665444 78988887655554433211
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHHH
Q psy8850 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLM 308 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 308 (397)
...+++.....++.++++ ..+++++..+++.++++++.+.|++ ++...+..+.. +.++++.++ ..+..++..
T Consensus 259 -~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 3h14_A 259 -MFICAPHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPK-AGFTRIAPPDG---AFYVYADVSDLTDDSRAFAA 332 (391)
T ss_dssp -TTCCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCBCCCCB---TTEEEEECTTTCSCHHHHHH
T ss_pred -hccCCCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCe---eEEEEEecCccCCCHHHHHH
Confidence 123455555555556666 3456788899999999999999998 54322222222 345566665 346777877
Q ss_pred HhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q psy8850 309 AIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378 (397)
Q Consensus 309 ~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 378 (397)
.|. ||.+.+|..|... ...+++||+++. +++++++++++|++++++....++
T Consensus 333 ~l~~~~gi~v~~g~~~~~~----------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~~~~ 387 (391)
T 3h14_A 333 EILEKAGVAVTPGLDFDPE----------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGEGHH 387 (391)
T ss_dssp HHHHHHCEECEEGGGTCTT----------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHCCEEEcCchhhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhccccc
Confidence 753 9999999776540 124899999997 789999999999999887665544
No 68
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.2e-32 Score=257.47 Aligned_cols=335 Identities=13% Similarity=0.111 Sum_probs=246.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
+++++.+++.+ .++++.. .| .+....+...++++.++++++++ +.+++++|||+|+++++.. . ++||+
T Consensus 9 ~~~~~~~~~~~----~~~~~~~-~h-~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~-~----~~gd~ 76 (379)
T 3ke3_A 9 IDPNGLLEYSV----VYTDRAL-NH-MSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQ-L----TIDED 76 (379)
T ss_dssp CSTTSCCCCCS----SCCTTSC-CT-TSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHH-H----CTTCE
T ss_pred CCHHHHHHHHH----hccCCCC-CC-CCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHh-C----CCCCe
Confidence 34444444432 2445543 33 35667789999999999999998 6799999999999998764 3 58999
Q ss_pred EEEcCCCChhhHHHHHHHhhCC--cEEEEeccCCC---------CCCCHHHHHHHhc-CCceEEEEecccCccccccc--
Q psy8850 89 IITVQTEHKSVLDSIRKLENDG--FRVTYLKPKNN---------GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP-- 154 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g--~~v~~v~~~~~---------~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~-- 154 (397)
|++.+++|++.... ..+...| .+++.++.+.. +.+|++++++++. +++++|++++++|++|.+.|
T Consensus 77 vi~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~ 155 (379)
T 3ke3_A 77 CLIIRNGWFSYRWT-QILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEE 155 (379)
T ss_dssp EEEEECSHHHHHHH-HHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHH
T ss_pred EEEEeCCchhHHHH-HHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHH
Confidence 99999988876422 2222224 57888876431 2589999999995 48999999999999999999
Q ss_pred -HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccc-cCCc----
Q psy8850 155 -ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH-GGGH---- 227 (397)
Q Consensus 155 -l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~-~~~~---- 227 (397)
+++|.++|++||+++|+|++++ |..++++..+++|++++|+|| +.||.|+|+++++++..+.+.+... +...
T Consensus 156 ~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 234 (379)
T 3ke3_A 156 YIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQ 234 (379)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHH
Confidence 9999999999999999999999 877777777789999999999 7778889999999776544432110 0000
Q ss_pred ----------cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE
Q psy8850 228 ----------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296 (397)
Q Consensus 228 ----------~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 296 (397)
..+...++++...++++.++++++.+ +++++.++..++++++++.|++ + ++.+..++....+.+..+
T Consensus 235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~-g~~~~~~~~~~~~~i~~~ 312 (379)
T 3ke3_A 235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD-K-GIESVAAEGFEAPGVVVS 312 (379)
T ss_dssp HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSBCTTCBCSSEEEE
T ss_pred HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCccccCceEEEE
Confidence 00111248889999999999998865 4899999999999999999998 4 776665544333444444
Q ss_pred EecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 297 SFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 297 ~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
..++. ...+...|. ||.+.+|..|..+ .+..++.|||++..++|++||++++++|+++++++.
T Consensus 313 ~~~~~-~~~~~~~L~~~Gi~v~~g~~~~~~--------------~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 313 YTERD-DMHKGSAFAEAGLQIAAGVPLKVG--------------EPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ECSCH-HHHSSHHHHHTTCCCEECCCCSSC--------------CCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccCCc-chHHHHHHHHCCeEEeCCcccccc--------------ccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 44321 111133443 8888888654321 011248899999988999999999999999988765
No 69
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=100.00 E-value=6.5e-32 Score=252.26 Aligned_cols=335 Identities=12% Similarity=0.089 Sum_probs=235.5
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh---Hhhh
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA---AHFY 82 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l---~~~~ 82 (397)
.+++|+.+++++.+.+.....+| .....++++.++++++.+ ++++++|+++|+.+++.++ .
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~--- 71 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFS--- 71 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCC---
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccC---
Confidence 45789999999999886522111 235788999999999987 8999999999999999998 5
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
++||+|+++.++|+++...+... |.+++.++.++++.+|++++++++++++++|+++++ ||.+.|+++|.++|
T Consensus 72 -~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~ 144 (375)
T 2fnu_A 72 -ADRNEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLC 144 (375)
T ss_dssp -TTSCEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHH
T ss_pred -CCCCEEEECCCccHhHHHHHHHC---CCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHH
Confidence 78999999999999999887776 999999999877789999999999999999888776 99999999999999
Q ss_pred HhcCcEEEEecccccCccccc--cCcccccEEEeccc--cccCCCCceEEEEe--cCCCCccccccccCCc---ccccc-
Q psy8850 163 RSKGVIFHCDAAQAVGKIDIN--IQNYKVDLMSFSAH--KIYGPKGIGALYIR--RNPRTRIEAQIHGGGH---EYGLR- 232 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~~~~~--~~~~~~d~~~~s~~--K~~g~~g~g~~~~~--~~~~~~~~~~~~~~~~---~~~~~- 232 (397)
++||+++|+|++|+.+..+.. +..++ |++++|++ |++|+ |.|+++++ ++..+.+.+...++.. ...+.
T Consensus 145 ~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2fnu_A 145 KKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV 222 (375)
T ss_dssp HHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred HHcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence 999999999999997765422 22222 56655555 97787 78988885 2243444433222210 00111
Q ss_pred --CCCC-chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC--CCCCCceEEEEecC--C-Ch
Q psy8850 233 --SGTL-ATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--I-EG 303 (397)
Q Consensus 233 --~~~~-~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~ 303 (397)
.+.+ ....+. +++... .++++++.++..++++++.+.|++ ++++.+..++ ....+.++.+.++. . +.
T Consensus 223 ~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2fnu_A 223 KSIGHNFRLNEIQ---SALGLSQLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCK 298 (375)
T ss_dssp SSCCCBCCCCHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGH
T ss_pred ccccccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccchH
Confidence 1111 111111 111111 235677888999999999999999 8888877542 11224455667663 2 56
Q ss_pred HHHHHHhC--CcEecccCccCCCCCChhhHHH-hhC---C--CccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLR-ALG---C--NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~-~~g---~--~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.++.+.|. ||.+.. .|.+....+ .+. .+. . ......+.|||+++..++++|+++++++|+++++++
T Consensus 299 ~~l~~~L~~~gi~v~~--~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 299 KLILESLHKRGILAQV--HYKPIYQYQ--LYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHTTEECBC--CCCCGGGSH--HHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccc--cccccccch--hhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 67877776 887773 233311000 010 000 0 001123789999999999999999999999998764
No 70
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=2.8e-33 Score=269.42 Aligned_cols=333 Identities=17% Similarity=0.204 Sum_probs=249.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc----EEEeCChhHHHHHHHHH
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE----IIWTSGATESNNLAIKG 77 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----i~~~~g~t~a~~~~l~~ 77 (397)
++..++|+.|++++.+.+...+ ++|.+..|..+....+....+++++++++|+++++ |++++|+ +|+.+++.+
T Consensus 51 a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~a 129 (483)
T 1rv3_A 51 ASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTA 129 (483)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHH
Confidence 4566889999999999887655 56665334444445567778899999999998653 6666666 888888888
Q ss_pred hHhhhccCCCEEEEcCCCChhhHHHH--------HHHhhCC--cEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecc
Q psy8850 78 AAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG--FRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLV 145 (397)
Q Consensus 78 l~~~~~~~g~~vl~~~~~~~s~~~~~--------~~~~~~g--~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~ 145 (397)
++ ++||+|++++++|+++.... ... | .+++.++++ +++.+|+++|+++++ ++|++|++ ++
T Consensus 130 ll----~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~---G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~ 201 (483)
T 1rv3_A 130 LV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISAT---SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GT 201 (483)
T ss_dssp HT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHH---HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CC
T ss_pred hc----CCCCEEEEecCccCcCcchhhhhcccCcccc---cceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eC
Confidence 87 89999999999998886432 222 3 456666556 578899999999998 79999999 88
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcc---cccEEEecccc-ccCCCCceEEEEecCCCCccc--
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE-- 219 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~---~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~-- 219 (397)
+|++ .+.|+++|.++|+++|++|++|++|+.|....+.... ++|++++|+|| +.||.| |+++++++... +.
T Consensus 202 sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~~~ 278 (483)
T 1rv3_A 202 SCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VDPK 278 (483)
T ss_dssp SSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-----
T ss_pred CcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-hccc
Confidence 8888 8899999999999999999999999866554433333 68999999999 778887 99999976431 11
Q ss_pred ----------cccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850 220 ----------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288 (397)
Q Consensus 220 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 288 (397)
..+.. .......|+++...++++.++++... .+++++.+++.++++++.+.|.+ + ++.+..+..
T Consensus 279 ~g~~~~y~~~~~~~~--~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~- 353 (483)
T 1rv3_A 279 TGKEILYNLESLINS--AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYKIVTGGS- 353 (483)
T ss_dssp ---CCBCCHHHHHHH--HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC-
T ss_pred cCcchhhHHHHHhhh--hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCEeccCCC-
Confidence 00000 00111256788888999988998875 46888999999999999999999 5 888776422
Q ss_pred CCCceEEEEec--CCChHHHHHHhC--CcEec----ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC----H
Q psy8850 289 RIPHNLNISFN--FIEGESLLMAIK--DIAVS----SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----E 356 (397)
Q Consensus 289 ~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~----~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~ 356 (397)
..+++++.+. +.+..++...|. ||.+. +|..+. ...+.+||+++.+++ +
T Consensus 354 -~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~------------------~~~~~iRis~~~~~t~g~~~ 414 (483)
T 1rv3_A 354 -DNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSA------------------LRPSGLRLGTPALTSRGLLE 414 (483)
T ss_dssp -SSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCT------------------TSCCEEEEECHHHHHTTCCH
T ss_pred -CCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcC------------------CCCceEEeecCCcccCCCCH
Confidence 1345566664 356677777665 88887 654211 123789999987666 9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8850 357 KEIDFTIKLLKMKVKK 372 (397)
Q Consensus 357 ~~i~~~~~~l~~~~~~ 372 (397)
+|+++++++|.+++..
T Consensus 415 edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 415 KDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 71
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-31 Score=249.52 Aligned_cols=306 Identities=18% Similarity=0.152 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
++|+.+++++.+.+.....+|.. ...++++.++++++++++++++|+|+++|+.+++.++ |
T Consensus 39 ~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--------d 99 (361)
T 3ftb_A 39 GIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--------E 99 (361)
T ss_dssp CSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC--------S
T ss_pred CCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc--------C
Confidence 46899999999988764433221 3478899999999998889999999999999998866 7
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHh
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRS 164 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~ 164 (397)
+|+++.++|+++...+... |.+++.+|.++++.++++++++++++ ++++++++++||||.+.| +++|+++|++
T Consensus 100 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 175 (361)
T 3ftb_A 100 KILIIVPSYAEYEINAKKH---GVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEE 175 (361)
T ss_dssp EEEEEESCCTHHHHHHHHT---TCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHH
T ss_pred cEEEecCChHHHHHHHHHc---CCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh
Confidence 8999999999998887777 99999999998777899999999998 999999999999999998 5668888889
Q ss_pred cCcEEEEecccccCccc-----cc-cCcccccEEEeccccccCCCC--ceEEE-EecCCCCccccccccCCccccccCCC
Q psy8850 165 KGVIFHCDAAQAVGKID-----IN-IQNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT 235 (397)
Q Consensus 165 ~gi~livD~a~~~~~~~-----~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (397)
||+++|+|++|+..... .. ....+.++++.|++|.+|+.| +|+++ .+++..+.+..... ..+
T Consensus 176 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~---------~~~ 246 (361)
T 3ftb_A 176 KKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN---------PWN 246 (361)
T ss_dssp HTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC---------TTC
T ss_pred cCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC---------CCC
Confidence 99999999999843321 11 112245588899999666434 68877 45444333332211 235
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE-EeCCCCCCCCceEEEEecCCChHHHHHHhC--C
Q psy8850 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIEGESLLMAIK--D 312 (397)
Q Consensus 236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 312 (397)
.+.....++.++++. .+++++..+++.++++++.+.|++ ++++. +..+. +.++++.+++.+..++.+.|. |
T Consensus 247 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~g 320 (361)
T 3ftb_A 247 INCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNK-IGFIKRVFSPH----ANFVLCRLENISGEKLYDSLLKED 320 (361)
T ss_dssp SCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEECCS----SSEEEEEESSSCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCceecCCC----CeEEEEEcCCCCHHHHHHHHHHCC
Confidence 566667777677764 456788899999999999999998 88887 65443 446677887667778888776 8
Q ss_pred cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
|.+.+|..|.. ..++++|++++ +.+++++++++|+++.+
T Consensus 321 i~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 321 IVIRRCCNFIG-----------------LDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp EECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred eEEeeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 99999876643 12489999997 78899999999987764
No 72
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=100.00 E-value=1.6e-32 Score=254.73 Aligned_cols=319 Identities=18% Similarity=0.183 Sum_probs=233.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
||++..+++++.+++++.+.+..+ ..+....+...++++.+++++|.+++++++++|+++|+.+++.++.
T Consensus 18 l~~~~~~~~~~~v~~a~~~~~~~~---------~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~- 87 (359)
T 1svv_A 18 FVNDYSVGMHPKILDLMARDNMTQ---------HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL- 87 (359)
T ss_dssp CSCSCSSCCCHHHHHHHHHHTTCC---------CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-
T ss_pred ecCCCcCCCCHHHHHHHHHHHhhc---------cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh-
Confidence 567777788999999999988631 1112234578889999999999988899999999999999999887
Q ss_pred hhccCCCEEEEcCCCChhhHHH--HHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC-------ceEEEEecccCcccc
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVMLVNNEIGV 151 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~--~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-------~~~v~~~~~~~~tG~ 151 (397)
++|++|++++++|+++... +... |.+++.+|.+ ++.+|+++|+++++++ +++|+++++ ||||.
T Consensus 88 ---~~gd~vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~ 159 (359)
T 1svv_A 88 ---RPWEAVIATQLGHISTHETGAIEAT---GHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT 159 (359)
T ss_dssp ---CTTEEEEEETTSHHHHSSTTHHHHT---TCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred ---CCCCEEEEcccchHHHHHHHHHhcC---CCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence 7899999999999998774 4433 9999999986 6779999999999876 899999998 79999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEeccc---ccCccccccCc----ccccEEEeccccccCCCCceEEEEecCCCCccccc
Q psy8850 152 IQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQN----YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ 221 (397)
Q Consensus 152 ~~~---l~~i~~l~~~~gi~livD~a~---~~~~~~~~~~~----~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~ 221 (397)
++| +++|.++|++||+++|+|++| +.+..+.+... ...|++++|++|++++.|.|+++++++..+.+...
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~ 239 (359)
T 1svv_A 160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL 239 (359)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH
T ss_pred ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHH
Confidence 999 888999999999999999999 44544433332 35799999999987787889999988777666543
Q ss_pred cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (397)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (397)
...+. ... ..+.....++.++++. .+++++.+++.++++++.+.| + .+++.+..+.. ..++++.++
T Consensus 240 ~~~~~----~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~L-~-~~~~~~~~~~~---~~~~~~~~~-- 305 (359)
T 1svv_A 240 IKQRG----ALM-AKGWLLGIQFEVLMKD--NLFFELGAHSNKMAAILKAGL-E-ACGIRLAWPSA---SNQLFPILE-- 305 (359)
T ss_dssp HHHTT----CCC-TTTHHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHH-H-HTTCCBSSCCS---SSEECBEEE--
T ss_pred HhcCC----ccc-ccchhhHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHh-c-cCCeEEccCCc---cceEEEEcC--
Confidence 21111 000 1111222223222221 246778899999999999999 5 57776664432 334344443
Q ss_pred ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.++.+.|. ||.+... . ....++|||+++..++++++++++++|+++++++
T Consensus 306 --~~~~~~l~~~~gi~v~~~-~-------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 --NTMIAELNNDFDMYTVEP-L-------------------KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp --HHHHHHHTTTEECEEEEE-E-------------------TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHhcCEEEEec-c-------------------cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 46766664 5665210 0 0123789999988889999999999999887653
No 73
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2.9e-33 Score=265.88 Aligned_cols=327 Identities=12% Similarity=0.065 Sum_probs=237.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
+++.+.+++.+.+...... .. .|.. .....++++.+++++ | +++++|++|+|+++|+.+++.++.
T Consensus 59 ~~~~v~~a~~~~~~~~~~~-~~-~y~~----~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-- 130 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHY-TL-QYST----TEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-- 130 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHH-HT-SCCC----TTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhhcchh-hc-CCCC----CCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC--
Confidence 5688999999888651100 00 1111 122455666666666 8 567789999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--------CceEE-EEecccCccccc
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--------DTILV-SVMLVNNEIGVI 152 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--------~~~~v-~~~~~~~~tG~~ 152 (397)
++||+|++..++|+++...+... |.+++.+|.++++ +|+++|++++++ ++++| ++++++||||.+
T Consensus 131 --~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~ 204 (425)
T 1vp4_A 131 --DDESYCVLDDPAYLGAINAFRQY---LANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT 204 (425)
T ss_dssp --CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC
T ss_pred --CCCCEEEEeCCCcHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc
Confidence 78999999999999998777665 9999999987665 899999999876 78887 578999999999
Q ss_pred cc---HHHHHHHHHhcCcEEEEecccccCcc----ccccC---cccccEEEeccccccCCCC--ceEEEEecCCCCcccc
Q psy8850 153 QP---ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQ---NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 220 (397)
Q Consensus 153 ~~---l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~---~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~ 220 (397)
+| +++|+++|++||+++|+|++|+.+.. ..++. ..+.++++.|++|.+| .| +|+++++++..+.+..
T Consensus 205 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~ 283 (425)
T 1vp4_A 205 TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQ 283 (425)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHHHHHHHHH
Confidence 98 56789999999999999999985321 12221 1246788999999766 45 6999988665544433
Q ss_pred ccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEE
Q psy8850 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLN 295 (397)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~ 295 (397)
.... .. .+.+.....++.++++.. .+++++..+++.++++++.+.|++.++ ++.+..+.. +.+++
T Consensus 284 ~~~~------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~---g~~~~ 353 (425)
T 1vp4_A 284 AKQS------AD-LCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG---GLFIW 353 (425)
T ss_dssp HHHH------HH-SSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB---SSEEE
T ss_pred Hhhh------hc-CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCc---cEEEE
Confidence 2211 11 133555556666677653 446778888999999999999988435 577654432 45667
Q ss_pred EEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 296 ISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 296 ~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.++. .+..++.+.|. ||.+.+|..|.+. ....++|||+++.. +++++++++++|++++++
T Consensus 354 ~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 354 LTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp EECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHCCCEEECchhhcCC---------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 77763 34556666665 9999998766531 01237899999874 899999999999999988
Q ss_pred HHhc
Q psy8850 373 LREL 376 (397)
Q Consensus 373 ~~~~ 376 (397)
+.+.
T Consensus 418 ~~~~ 421 (425)
T 1vp4_A 418 YGKE 421 (425)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7654
No 74
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.4e-32 Score=257.36 Aligned_cols=321 Identities=17% Similarity=0.172 Sum_probs=240.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
+++.+.+++.+.+... +++.. .+.+.+...+...++++.++++++.+ +.+++++|++|+..++.++. ++|++
T Consensus 58 ~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~l~~~~----~~gd~ 129 (399)
T 3tqx_A 58 DHPALIKTAQTVVEQY-GFGMA-SVRFICGTQTIHKELEKDISEFLGTD--DTILYSSCFDANGGLFETLL----GPEDA 129 (399)
T ss_dssp TCHHHHHHHHHHHHHH-CSCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTCE
T ss_pred CCHHHHHHHHHHHHHh-CCCCC-CcCccccCchHHHHHHHHHHHHHCCC--cEEEECchHHHHHHHHHHhc----CCCCE
Confidence 5799999999998763 22222 12222233467889999999999987 45555667889999988877 79999
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHH
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
|+++.++|+++...+... |.++..+|. +|++++++++++ ++++|++++++||||.+.|+++|.++|
T Consensus 130 v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 201 (399)
T 3tqx_A 130 IISDELNHASIIDGIRLC---KAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLA 201 (399)
T ss_dssp EEEETTCCHHHHHHHHSC---CSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHc---CCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 999999999998876665 899998886 378899998876 899999999999999999999999999
Q ss_pred HhcCcEEEEecccccCccc------cccCc--ccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCccccccC
Q psy8850 163 RSKGVIFHCDAAQAVGKID------INIQN--YKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~~~------~~~~~--~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
++||+++|+|++|+.+... .+... .++|+++.|+||.++ +.| |+++.+++..+.+...... . ...
T Consensus 202 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~~----~-~~~ 275 (399)
T 3tqx_A 202 DKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSRP----Y-LFS 275 (399)
T ss_dssp HHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCHH----H-HSS
T ss_pred HHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCcc----e-ecc
Confidence 9999999999999755422 11111 157999999999555 776 9999987655554432111 0 113
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC-
Q psy8850 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK- 311 (397)
Q Consensus 234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~- 311 (397)
++.+...++++.++++...++.+++.+++.++++++.+.|++ + ++.+..+ . +.++++.++.. +..++...|.
T Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~ 349 (399)
T 3tqx_A 276 NTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK-L-GFQLVPG-N---HPIIPVMLGDAQLATNMADHLLQ 349 (399)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC-S---SSEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-c-CCCcCCC-C---CCEEEEEeCCHHHHHHHHHHHHH
Confidence 456677777777888876556788999999999999999998 4 5555422 2 45666776642 4566777665
Q ss_pred -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
||.+.++.++.. ....+++||+++..++++++++++++|+++++++
T Consensus 350 ~gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 350 EGIYVVGFSYPVV----------------PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TTEECCEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEeeeCCCCC----------------CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 888887533211 1224789999998899999999999999998765
No 75
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.3e-32 Score=257.20 Aligned_cols=316 Identities=11% Similarity=0.065 Sum_probs=234.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++++.+++++.+.+.... . .|.. . . .++++.++++++ +++++|++|+|+++|+++++.++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~----~-~y~~-~----~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~-- 102 (377)
T 3fdb_A 36 STCPAVLQAITDAVQREA----F-GYQP-D----G-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT-- 102 (377)
T ss_dssp CCCHHHHHHHHHHHHTTC----C-SSCC-S----S-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHcCC----C-CCCC-C----C-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc--
Confidence 578999999999887511 0 1111 1 1 345566666655 667789999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 158 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i 158 (397)
++|++|+++.++|+++...+... |.+++.+|.+.+ +|+++++++++++++++++++++||||.++| +++|
T Consensus 103 --~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l 175 (377)
T 3fdb_A 103 --PAQSKVIVPTPAYPPFFHLLSAT---QREGIFIDATGG--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNEL 175 (377)
T ss_dssp --CTTCCEEEEESCCTHHHHHHHHH---TCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHH
T ss_pred --CCCCEEEEcCCCcHhHHHHHHHc---CCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 78999999999999998888777 999999999876 8999999999999999999999999999987 5667
Q ss_pred HHHHHhcCcEEEEecccccCc-----cccccCc---ccccEEEeccccccCCCC--ceEEEE-ecCCCCccccccccCCc
Q psy8850 159 GELCRSKGVIFHCDAAQAVGK-----IDINIQN---YKVDLMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGH 227 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~-----~~~~~~~---~~~d~~~~s~~K~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~ 227 (397)
+++|++||+++|+|++|+... ...++.. .+.++++.|++|.+|..| +|++++ +++....+....
T Consensus 176 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~----- 250 (377)
T 3fdb_A 176 CDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS----- 250 (377)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC-----
T ss_pred HHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH-----
Confidence 778999999999999998522 1222222 245688999999665444 687776 433333333221
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHH
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESL 306 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 306 (397)
.....+.+.....+..++++...++++++.+++.++++++.+.|++.++++.+..+.. +.++++.++.. ...++
T Consensus 251 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 325 (377)
T 3fdb_A 251 --PVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA---TYLMWIDFRDTTIEGSP 325 (377)
T ss_dssp --HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB---CSEEEEECTTSCCCSCH
T ss_pred --HhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe---eEEEEEECcccCCCHHH
Confidence 1112345666666666777755556788899999999999999988567888776543 34456777642 22344
Q ss_pred HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
...+. ||.+.+|..|... ..+++||+++. +++++++++++|++++++
T Consensus 326 ~~~l~~~~gi~v~~g~~~~~~-----------------~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 326 SEFFIEKAKVAMNDGAWFGED-----------------GTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp HHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCEEecCChhccCC-----------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 44442 8999998766540 24899999984 899999999999988754
No 76
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-32 Score=255.54 Aligned_cols=315 Identities=13% Similarity=0.090 Sum_probs=233.0
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCC--CC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--PR-EIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~~-~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
+++.+++++.+.+.... .+. |.......++++.+++++ |.+ ++ +|++++|+++|+.+++.++.
T Consensus 39 ~~~~v~~a~~~~~~~~~------~~~--y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~-- 108 (376)
T 2dou_A 39 PPEAPLKALAEALNDPT------TYG--YCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT-- 108 (376)
T ss_dssp CCHHHHHHHHHHTTCGG------GSS--CCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhCCC------cCC--CCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc--
Confidence 57899999988875410 111 111235667777777776 874 45 89999999999999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 158 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i 158 (397)
++||+|++..++|+++...+... |.+++.+|.+++..+|++++++++++++++|++++++||||.++| +++|
T Consensus 109 --~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l 183 (376)
T 2dou_A 109 --EPEDLLLLPEVAYPSYFGAARVA---SLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEA 183 (376)
T ss_dssp --CTTCEEEEESSCCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred --CCCCEEEECCCCcHhHHHHHHHc---CCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHH
Confidence 78999999999999998877766 999999998444468999999999888999999999999999988 5788
Q ss_pred HHHHHhcCcEEEEecccccCcc---c---ccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKI---D---INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~---~---~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~ 229 (397)
+++|++||+++|+|++|+.+.. + .+. ...+.++++.|++|.+|+.| +|+++++++..+.+......
T Consensus 184 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~----- 258 (376)
T 2dou_A 184 LGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGV----- 258 (376)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHH-----
T ss_pred HHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHh-----
Confidence 9999999999999999985321 1 122 11256789999999665444 79999887655544432211
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHH
Q psy8850 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLM 308 (397)
Q Consensus 230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 308 (397)
+ ..+.+.....++.++++...+++++..+++.++++++.+.|++ + +.+..+.. +.++++.++ +.+..++.+
T Consensus 259 -~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 330 (376)
T 2dou_A 259 -I-DFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLLPPRA---TMYLWGRLPEGVDDLEFGL 330 (376)
T ss_dssp -H-CCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEECCCCB---SSEEEEECCTTCCHHHHHH
T ss_pred -c-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCccCCCe---eEEEEEECCCCCCHHHHHH
Confidence 1 1234555556666677654456788889999999999999998 4 55544322 345667776 345667777
Q ss_pred HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.|. ||.+.+|..|.+ ...+++||+++. +++++++++++|++++
T Consensus 331 ~l~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 331 RLVERGVALAPGRGFGP-----------------GGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp HHHHTTEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred HHHHCCEEEcCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 775 999998865542 124789999985 7999999999998754
No 77
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=2e-32 Score=257.03 Aligned_cols=311 Identities=15% Similarity=0.123 Sum_probs=229.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++++.+.+++.+.+.... . .|... ....++++.+++++ |+ +++++++++|+++|+.+++.++.
T Consensus 54 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~-- 122 (389)
T 1o4s_A 54 PTPEPVVEEAVRFLQKGE----V-KYTDP----RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-- 122 (389)
T ss_dssp CCCHHHHHHHHHHHTTCC----C-CCCCT----TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhcCC----C-CCCCC----CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--
Confidence 457899999998886421 1 12211 12345555555555 75 56789999999999999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++||+|++++++|+++...+... |.+++.+|.++ ++.+|+++|++++++++++|++++++||||.++| ++
T Consensus 123 --~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~ 197 (389)
T 1o4s_A 123 --DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLE 197 (389)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHH
Confidence 78999999999999998877666 99999999874 4578999999999989999999999999999988 88
Q ss_pred HHHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 227 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~ 227 (397)
+|+++|++||+++|+|++|+.+.. ..++.. .+.|+++.|+||.+|+.| +|+++++++..+.+......
T Consensus 198 ~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~--- 274 (389)
T 1o4s_A 198 GLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSH--- 274 (389)
T ss_dssp HHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhh---
Confidence 999999999999999999985443 112211 367999999999767556 79999987655544433221
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHH
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL 307 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (397)
... +.+.....+..++++. +++++.+++.++++++.+.|++ + ++.+..+.. +.++++.++ .+..++.
T Consensus 275 ---~~~-~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~-~~~~~l~ 341 (389)
T 1o4s_A 275 ---TTS-CINTVAQYAALKALEV---DNSYMVQTFKERKNFVVERLKK-M-GVKFVEPEG---AFYLFFKVR-GDDVKFC 341 (389)
T ss_dssp ---HTC-SCCHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCSB---SSEEEEECS-SCHHHHH
T ss_pred ---ccc-CCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHh-c-CCeeecCCc---ceEEEEeCC-CCHHHHH
Confidence 111 2233333333344432 3677888999999999999998 5 665554322 345566665 5677787
Q ss_pred HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
+.|. ||.+.+|..|.. ++++||+++. +++++++++++|.++++
T Consensus 342 ~~l~~~~gi~v~~g~~f~~-------------------~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 342 ERLLEEKKVALVPGSAFLK-------------------PGFVRLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHCEECEEGGGGTC-------------------TTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCEEEeCchhcCC-------------------CCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 7763 899988865432 2689999984 89999999999988763
No 78
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.1e-31 Score=252.06 Aligned_cols=324 Identities=11% Similarity=0.089 Sum_probs=234.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHH-HHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEK-AIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++|+.+.+++.+.+... .. .|... ..+ ..+.+.+.+.+.+| +++++|++|+|+++|+.+++.++. +
T Consensus 41 ~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~----~ 109 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMHG----VF-GYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----E 109 (390)
T ss_dssp CCCHHHHHHHHHHHTTC----CC-CCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----C
T ss_pred CCCHHHHHHHHHHHhCC----CC-CCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc----C
Confidence 46899999999988541 11 22211 122 33333344444446 667789999999999999999987 7
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC---CCCHHHHHHHhcC-CceEEEEecccCccccccc---HHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG---LITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILE 157 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~---~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~---l~~ 157 (397)
+||+|++..++|+++...+... |.+++.+|.+.++ .+|+++|++++++ ++++|++++++||||.++| +++
T Consensus 110 ~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 110 TGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp TTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred CCCEEEEcCCCcHHHHHHHHHC---CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 8999999999999998887766 9999999986432 4899999999986 8999999999999999988 788
Q ss_pred HHHHHHhcCcEEEEecccccCcc----ccccCccc---ccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCc
Q psy8850 158 IGELCRSKGVIFHCDAAQAVGKI----DINIQNYK---VDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGH 227 (397)
Q Consensus 158 i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~---~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~ 227 (397)
|+++|++||+++|+|++|+.+.. ..++..+. .|. +.|+||.+|+.| +|+++++ ++....+.....+
T Consensus 187 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--- 262 (390)
T 1d2f_A 187 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG--- 262 (390)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHT---
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhh---
Confidence 99999999999999999985321 22222222 266 999999666445 6999986 3443444332210
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES 305 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 305 (397)
....++.+.....+..++++...+.+++..+++.++++++.+.|++.++++.+..+.. +.++++.++. .+..+
T Consensus 263 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 337 (390)
T 1d2f_A 263 --RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---TYLAWLDLRPLNIDDNA 337 (390)
T ss_dssp --TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---CSEEEEECGGGCCCHHH
T ss_pred --hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCc---cEEEEEEccccCCCHHH
Confidence 1222356666666666777754456788889999999999999987456765544322 3445677764 46677
Q ss_pred HHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 306 LLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 306 ~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+...|. ||.+.+|..|.+ ..++++||+++. +++++++++++|.++++++
T Consensus 338 l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 338 LQKALIEQEKVAIMPGYTYGE-----------------EGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCEEeeCccccCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 777663 899998865542 123789999996 5899999999999988764
No 79
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=3.8e-32 Score=256.29 Aligned_cols=320 Identities=14% Similarity=0.172 Sum_probs=237.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
+++.+++++.+.+.. ++.... .+.+.+...+...++++.+++++|++ +.+++++|++|+..++.++. ++|++
T Consensus 60 ~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~----~~gd~ 131 (401)
T 1fc4_A 60 NHPDLIAAAKAGMDS-HGFGMA-SVRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLL----GAEDA 131 (401)
T ss_dssp TCHHHHHHHHHHHHH-HCSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTCE
T ss_pred CCHHHHHHHHHHHHH-hCCCCC-CCCcccCCcHHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHc----CCCCE
Confidence 489999999998865 222221 22222212467889999999999987 44556677889999888876 78999
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHH
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
|+++.++|+++...+... |.+++.++. +|++++++++++ ++++|++++++||||.+.|+++|.++|
T Consensus 132 v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 203 (401)
T 1fc4_A 132 IISDALNHASIIDGVRLC---KAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLA 203 (401)
T ss_dssp EEEETTCCHHHHHHHHTS---CSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred EEEcchhHHHHHHHHHHc---CCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHH
Confidence 999999999887765544 999988874 489999998875 789999999999999999999999999
Q ss_pred HhcCcEEEEecccccCcc-c--------cccCcccccEEEecccccc-CCCCceEEEEecCCCCccccccccCCcccccc
Q psy8850 163 RSKGVIFHCDAAQAVGKI-D--------INIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~~-~--------~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (397)
++||+++|+|++|+.+.. + .++.. +.|+++.|+||.+ |+.| |+++++++..+.+...... ..+
T Consensus 204 ~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~~----~~~- 276 (401)
T 1fc4_A 204 DKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSRP----YLF- 276 (401)
T ss_dssp HHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCHH----HHH-
T ss_pred HHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCcC----cee-
Confidence 999999999999974443 1 22222 5799999999954 7666 9999987655544332110 011
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC
Q psy8850 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK 311 (397)
Q Consensus 233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 311 (397)
.++.+...++++.++++.... .+++.+++.++++++.+.|++ + ++.+.. . .+.++++.++. .+..++.+.|.
T Consensus 277 ~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-~---~~~~~~~~~~~~~~~~~l~~~l~ 349 (401)
T 1fc4_A 277 SNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA-A-GFTLAG-A---DHAIIPVMLGDAVVAQKFARELQ 349 (401)
T ss_dssp SCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH-T-TCCBCC-S---SSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCcccC-C---CCCEEEEEcCChHHHHHHHHHHH
Confidence 235566677777778876643 467888999999999999998 5 655542 1 25667777764 24566777665
Q ss_pred --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
||.+.++..+.. +...+++||+++..++++++++++++|++++++++
T Consensus 350 ~~gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 350 KEGIYVTGFFYPVV----------------PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp HTTEECCEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HCCcEEeeecCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 899988764432 01237899999988899999999999999987653
No 80
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=7e-32 Score=256.74 Aligned_cols=328 Identities=14% Similarity=0.142 Sum_probs=236.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++++.+.+++.+.+.... .... .|.......+..+.+.+.+.+.+| ++++ +|++++|+++|+.++++++. +
T Consensus 50 ~~~~~v~~a~~~~~~~~~-~~~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~ 123 (429)
T 1yiz_A 50 HAPKYALNALAAAANSPD-PLAN-QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV----D 123 (429)
T ss_dssp CCCHHHHHHHHHHHTCSC-GGGG-SCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhccc-cCcc-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc----C
Confidence 467999999999886510 0000 111111122333444444444457 4677 89999999999999999886 7
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC----------CCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----------NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
+|++|++..+.|+++...+... |.+++.+|.+. ++.+|+++|++++++++++|++++++||||.++|
T Consensus 124 ~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~ 200 (429)
T 1yiz_A 124 EGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMD 200 (429)
T ss_dssp TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred CCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCC
Confidence 8999999999999998877665 99999999875 3568999999999989999999999999999997
Q ss_pred ---HHHHHHHHHhcCcEEEEecccccCc------ccc-ccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccc
Q psy8850 155 ---ILEIGELCRSKGVIFHCDAAQAVGK------IDI-NIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 221 (397)
Q Consensus 155 ---l~~i~~l~~~~gi~livD~a~~~~~------~~~-~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~ 221 (397)
+++|+++|++||+++|+|++|+... .++ .+. ..+.|+++.|+||.+|+.| +|+++++++..+.+...
T Consensus 201 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 280 (429)
T 1yiz_A 201 RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMV 280 (429)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHHHHHH
Confidence 7899999999999999999998421 122 121 3468999999999766556 89999887655444332
Q ss_pred cccCCccccccCCCCchhHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-----A--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 294 (397)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~-----~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (397)
.. ....+.+.....++.++++. . .+.+++..+++.++++++.+.|++ + ++.+..+.. +.++
T Consensus 281 ~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~ 348 (429)
T 1yiz_A 281 HQ-------NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-GMNPTVPQG---GYFM 348 (429)
T ss_dssp HH-------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-H-TCEEEECSB---SSEE
T ss_pred Hh-------hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCc---ceEE
Confidence 21 11224455556666677776 3 345788889999999999999998 5 666664432 4566
Q ss_pred EEEecCC-------------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 295 NISFNFI-------------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 295 ~~~~~~~-------------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
++.++.. +..++...|. ||.+.+|..|.... . .....++|||+++. ++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~--------~----~~~~~~~iRis~~~--~~e~ 414 (429)
T 1yiz_A 349 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP--------N----KHLGEDFVRYCFFK--KDEN 414 (429)
T ss_dssp EEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG--------G----GGGTTTEEEEECCS--CHHH
T ss_pred EEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc--------c----cCCCCCeEEEEecC--CHHH
Confidence 7777642 3456766552 89999886554300 0 00124789999984 8999
Q ss_pred HHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKV 370 (397)
Q Consensus 359 i~~~~~~l~~~~ 370 (397)
|++++++|++++
T Consensus 415 i~~~l~~l~~~l 426 (429)
T 1yiz_A 415 LQKAAEILRKWK 426 (429)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 81
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=258.59 Aligned_cols=347 Identities=17% Similarity=0.184 Sum_probs=234.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
|+..+++.|+.+... ++.. +.|+....+..++...+...++++++++++|.+++++++++|||+|+.+++.++...
T Consensus 113 ~~~~~~~~~~~~~~~---~l~~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~ 188 (515)
T 2jis_A 113 NQLFSGLDPHALAGR---IITE-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQ 188 (515)
T ss_dssp SSSCCCCCHHHHHHH---HHHH-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHH---HHHH-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence 555555556555553 3332 224443244445566678888999999999998788999999999999998876432
Q ss_pred h----ccCCC------EEEEcCCCChhhHHHHHHHhhCCc---EEEEeccCCCCCCCHHHHHHHhcC------CceEEEE
Q psy8850 82 Y----KKRGK------HIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICS------DTILVSV 142 (397)
Q Consensus 82 ~----~~~g~------~vl~~~~~~~s~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~ 142 (397)
+ ..+|+ +|+++..+|+++..++..+ |. +++.+|.++++.+|+++|++++++ +|++|++
T Consensus 189 ~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~ 265 (515)
T 2jis_A 189 RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSA 265 (515)
T ss_dssp HCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 12354 8999999999999988877 55 899999988899999999999976 4899999
Q ss_pred ecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc-----cCcc-cccEEEecccc-ccCCCCceEEEEecC--
Q psy8850 143 MLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRN-- 213 (397)
Q Consensus 143 ~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~-- 213 (397)
++++|++|.+.|+++|+++|++||+++|+|++|+.+..+.+ +..+ ++|++++|+|| +++|.|+|+++++++
T Consensus 266 ~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~ 345 (515)
T 2jis_A 266 TSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSN 345 (515)
T ss_dssp EBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSC
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHH
Confidence 99999999999999999999999999999999997776543 3333 78999999999 456888999999976
Q ss_pred CCCc----cccccccCCc--cccccCCCCch-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850 214 PRTR----IEAQIHGGGH--EYGLRSGTLAT-----HQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIY 281 (397)
Q Consensus 214 ~~~~----~~~~~~~~~~--~~~~~~~~~~~-----~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (397)
.... ..+++.++.. ...+..++.+. ....++.+++..+ .++++++.++..++++++.+.|++ ++++.
T Consensus 346 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~ 424 (515)
T 2jis_A 346 LLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK-REGFE 424 (515)
T ss_dssp HHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEE
T ss_pred HHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEE
Confidence 2222 1222222111 00011111100 0122333334433 457888999999999999999999 88999
Q ss_pred EeCCCCCCCCceEEEEec-C-C----ChHHHHHH-------hCCcEecccCccCCCCCChhhHHHhhCCCc-cccCceEE
Q psy8850 282 INGDMNNRIPHNLNISFN-F-I----EGESLLMA-------IKDIAVSSGSACTSASLEPSYVLRALGCND-ELAHSSIR 347 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~-------l~~i~~~~g~~~~~~~~~~~~~~~~~g~~~-~~~~~~iR 347 (397)
++.++. ...+.|.+. . . +..++... +.+.....|..+.. ... ....+++|
T Consensus 425 ~~~~~~---~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~-------------~~~~~~~~~~lR 488 (515)
T 2jis_A 425 LVMEPE---FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIG-------------YQPHGTRGNFFR 488 (515)
T ss_dssp ESSCCS---SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEE-------------EEEETTEEEEEE
T ss_pred EeCCCC---eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-------------EEEECCceEEEE
Confidence 887533 234455442 1 0 11121111 11112222221100 000 01136899
Q ss_pred Eee-CCCCCHHHHHHHHHHHHHHHHH
Q psy8850 348 FTI-GRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 348 i~~-~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+++ +.+++++||+++++.|++++++
T Consensus 489 is~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 489 VVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999 7889999999999999987643
No 82
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-32 Score=259.25 Aligned_cols=318 Identities=12% Similarity=0.040 Sum_probs=233.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCC--C-CcEEEeCChhHHHHHHHHHhHhh
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--P-REIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~-~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
+++.+.+++.+.+..... . .|.. .....++++.+++++ |.+ + ++|++++|+++|+.+++.++.
T Consensus 61 ~~~~v~~a~~~~~~~~~~---~-~y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-- 130 (404)
T 2o1b_A 61 TPQGIIDHFQKALTIPEN---Q-KYGA----FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI-- 130 (404)
T ss_dssp CCHHHHHHHHHHTTCHHH---H-SCCC----TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhCCCC---C-CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc--
Confidence 578999999888743100 0 1111 112345666666665 864 3 689999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 157 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~ 157 (397)
++||+|++..++|+++...+... |.+++.+|.+. +..+|+++|++++++++++|++++++||||.++| +++
T Consensus 131 --~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 205 (404)
T 2o1b_A 131 --NPGDYVLLPDPGYTDYLAGVLLA---DGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDE 205 (404)
T ss_dssp --CTTCEEEEEESCCSSHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred --CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHH
Confidence 78999999999999998887766 99999999875 3358999999999888999999999999999997 678
Q ss_pred HHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850 158 IGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (397)
Q Consensus 158 i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~ 228 (397)
|+++|++||+++|+|++|+.+.. +.++.. .+.++++.|+||.+|+.| +|+++++++..+.+......
T Consensus 206 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---- 281 (404)
T 2o1b_A 206 AIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTH---- 281 (404)
T ss_dssp HHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHH----
T ss_pred HHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhh----
Confidence 99999999999999999985331 222222 256799999999666444 69999887655554432211
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL 307 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 307 (397)
...+.+.....++.++++...+++++..++++++++++.+.|++ + ++.+..+.. +.++++.++ +.+..++.
T Consensus 282 ---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~l~ 353 (404)
T 2o1b_A 282 ---TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFVHAKG---GIYVWLETPPGYDSEQFE 353 (404)
T ss_dssp ---HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCCB---SSEEEEECCTTCCHHHHH
T ss_pred ---ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeecCCCc---ceEEEEeCCCCCCHHHHH
Confidence 11245555666666677654456788889999999999999998 5 666654432 344667776 34566777
Q ss_pred HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.|. ||.+.+|..|.. ...+++||+++. +++++++++++|++++++
T Consensus 354 ~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 354 QFLVQEKSILVAPGKPFGE-----------------NGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp HHHHHHHCEECEESGGGCG-----------------GGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred HHHHHHCCEEEeCchhhCc-----------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 7642 999998866542 123789999996 688999999999887654
No 83
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-32 Score=259.06 Aligned_cols=322 Identities=13% Similarity=0.070 Sum_probs=235.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++++.+.+++ +.+.... . .|... ....++++.++++++ ++++++++++|+++|+.+++.++.
T Consensus 56 ~~~~~v~~a~-~~l~~~~----~-~y~~~----~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-- 123 (409)
T 2gb3_A 56 KTPEVFFERI-YENKPEV----V-YYSHS----AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-- 123 (409)
T ss_dssp CCCTHHHHHH-HHTCCSS----C-CCCCT----TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHH-HHHhcCC----C-CCCCC----CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--
Confidence 4578899999 7775311 0 12111 123556666666653 456789999999999999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~ 156 (397)
++||+|+++.++|+++...+... |.+++.+|.++ ++.+ +++|++++++++++|++++++||||.++| ++
T Consensus 124 --~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~ 197 (409)
T 2gb3_A 124 --NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMR 197 (409)
T ss_dssp --CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHH
Confidence 78999999999999999887777 99999999875 3344 89999999889999999999999999876 78
Q ss_pred HHHHHHHhcCcEEEEecccccCcc---ccc-cCc-ccccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCCcc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKI---DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHE 228 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~---~~~-~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~ 228 (397)
+|+++|++||+++|+|++|+.+.. ... +.. .+.|+++.|+||.+|+.| +|++++++ +..+.+......
T Consensus 198 ~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~---- 273 (409)
T 2gb3_A 198 YLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG---- 273 (409)
T ss_dssp HHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhc----
Confidence 899999999999999999985432 112 222 257999999999767556 79999887 555544433221
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE-eCCCCCCCCceEEEEecCCChHHHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFNFIEGESLL 307 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (397)
. . +.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+ ..+.. +.++++.+++.+..++.
T Consensus 274 --~-~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~~l~ 344 (409)
T 2gb3_A 274 --R-L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKPSG---AFYITAELPVEDAEEFA 344 (409)
T ss_dssp --S-C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCCSB---SSEEEEECSSSCHHHHH
T ss_pred --c-C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCCCe---eEEEEEEeCCCCHHHHH
Confidence 1 1 34555555666677543456788889999999999999998 5 6655 33322 34555566655667777
Q ss_pred HHh--C------CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 308 MAI--K------DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 308 ~~l--~------~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
..| + ||.+.+|..|... .....+++||+++ ++++++++++++|+++++++++-
T Consensus 345 ~~l~~~~~~~~~gi~v~~g~~f~~~--------------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 405 (409)
T 2gb3_A 345 RWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFCSS 405 (409)
T ss_dssp HHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhccccccCcEEEeCchHhCCC--------------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhhhc
Confidence 666 3 7888887655430 0112488999998 68999999999999999887653
No 84
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.6e-31 Score=245.98 Aligned_cols=302 Identities=16% Similarity=0.140 Sum_probs=227.0
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
+.++++.+++++.+.+..... |. .....++++.+++++++++++|++|+|+++++.+++.++ +
T Consensus 27 ~~~~~~~v~~a~~~~~~~~~~------y~-----~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~------~ 89 (337)
T 3p1t_A 27 PEAVEPRVQAAIAAAAARINR------YP-----FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF------S 89 (337)
T ss_dssp CSCCCHHHHHHHHHHGGGTTS------CC-----TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS------T
T ss_pred CCCCCHHHHHHHHHhhhhhcc------CC-----CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc------C
Confidence 346789999999998765322 21 136788999999999999889999999999999999876 6
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~ 165 (397)
||+|+++.++|+++...+... |.+++.+|.++++.+|+++++++ .+++++++++++||||.++|++++.++|+++
T Consensus 90 gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~ 164 (337)
T 3p1t_A 90 SMRFVTAWPGFDGYRARIAVS---GLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRA 164 (337)
T ss_dssp TSEEEEESSSCSHHHHHHTTS---CCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHC
T ss_pred CCeEEEeCCCcHHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence 799999999999988766655 99999999988888999999876 5689999999999999999999999999999
Q ss_pred CcEEEEecccccC--ccccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHH
Q psy8850 166 GVIFHCDAAQAVG--KIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI 241 (397)
Q Consensus 166 gi~livD~a~~~~--~~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (397)
++ +|+|++|+.. .........+.++++.|+||.+|+.| +|+++++++....+.... ...+.+...+
T Consensus 165 ~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~---------~~~~~~~~~~ 234 (337)
T 3p1t_A 165 GK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ---------WFCNVGTLDL 234 (337)
T ss_dssp SE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS---------CTTCSCHHHH
T ss_pred Cc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc---------CCCCCCHHHH
Confidence 97 5669998721 11222222357899999999666444 688888766554443321 1234555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850 242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS 319 (397)
Q Consensus 242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~ 319 (397)
.++.++++.. +.+.+..+++.++++++.+.|++ + ++.+..+. ..++++..+ +..++.+.|. ||.+.+|.
T Consensus 235 ~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~ 305 (337)
T 3p1t_A 235 HALEAALDND-RAREAHIAKTLAQRRRVADALRG-L-GYRVASSE----ANFVLVENA--AGERTLRFLRERGIQVKDAG 305 (337)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCS----SSEEEEECT--TTHHHHHHHHHTTEECEEGG
T ss_pred HHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHH-C-cCEECCCC----CeEEEEEcC--CHHHHHHHHHHCCeEEEECc
Confidence 6665666542 23566677778888999999998 5 66554332 344445443 3456666665 99999987
Q ss_pred ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.|.. .+++||+++ +++++++++++|+++.
T Consensus 306 ~~~~-------------------~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 306 QFGL-------------------HHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp GGTC-------------------CSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred cCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 6543 379999997 6999999999998765
No 85
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=1.6e-31 Score=248.39 Aligned_cols=305 Identities=20% Similarity=0.166 Sum_probs=232.0
Q ss_pred CCCCHHHHHHHHHHHhh----ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850 7 TPIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY 82 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~ 82 (397)
.++|+.+++++.+.+.. ...++.. ...++++++++++|+++++|++++|+++|+.+++.++.
T Consensus 38 ~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~--- 103 (360)
T 3hdo_A 38 YPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA--- 103 (360)
T ss_dssp SCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh---
Confidence 35789999999998875 2222221 23688999999999988899999999999999999887
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
++||+|+++.++|+++...+... |.+++.+|.++++.+ +++++.+ +++++++++++||||.++|++++.++|
T Consensus 104 -~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~ 175 (360)
T 3hdo_A 104 -AEGEEIGYVHPSYSYYGTLAEVQ---GARVRTFGLTGDFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEYIDELA 175 (360)
T ss_dssp -CTTCEEEEESSSCTHHHHHHHHH---TCEEEEECBCTTSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred -CCCCEEEEcCCChHHHHHHHHHC---CCEEEEeeCCCCCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence 78999999999999999888877 999999999876544 4444333 467999999999999999999999999
Q ss_pred HhcCcEEEEecccccCc--ccccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850 163 RSKGVIFHCDAAQAVGK--IDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~--~~~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
+++|+++|+|++|+... ..... ...+.++++.|++|.+|+.| +|+++++++..+.+..... ..+.+
T Consensus 176 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~ 246 (360)
T 3hdo_A 176 RRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD---------HYNLD 246 (360)
T ss_dssp HHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC---------SCCSC
T ss_pred HHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC---------CCCCC
Confidence 99999999999998421 11111 12256688999999655334 7888887655444433221 12456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV 315 (397)
Q Consensus 238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~ 315 (397)
.....++.++++. .+++++..+++.++++++.+.|++ + ++.+..+. +.++++.+++.+..++.+.|. ||.+
T Consensus 247 ~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~gi~v 319 (360)
T 3hdo_A 247 RLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRS-I-GYDVIPSQ----GNYLFATPPDRDGKRVYDGLYARKVLV 319 (360)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECTTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEcCCC----ccEEEEECCCCCHHHHHHHHHHCCEEE
Confidence 6666666677775 446788899999999999999998 5 77665332 445667777667788888776 8888
Q ss_pred cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
.++.. + ...+++||+++ +++++|+++++|+++.+
T Consensus 320 ~~~~~--~-----------------~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 320 RHFSD--P-----------------LLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp BCCCS--T-----------------TTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred EECCC--C-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 87642 1 12388999997 79999999999887653
No 86
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=8.9e-32 Score=252.24 Aligned_cols=316 Identities=15% Similarity=0.146 Sum_probs=236.1
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
++++.+++++.+.+.... +++.+ .+.. ...+...++++.+++++|++ +.+++++|++|+..++.++. ++|
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~~-~~~~--g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~----~~g 123 (384)
T 1bs0_A 53 SHHPQIIRAWQQGAEQFGIGSGGS-GHVS--GYSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKE 123 (384)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSB-TTTT--CCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCc-Cccc--CChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCC
Confidence 478999999999987622 11111 1221 22357889999999999986 56666677999999998876 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC---ceEEEEecccCcccccccHHHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCR 163 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~~~tG~~~~l~~i~~l~~ 163 (397)
++|+++.++|+++...+... |.+++.+|. +|++++++++++. +++|++++++||||.+.|+++|.++|+
T Consensus 124 d~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 195 (384)
T 1bs0_A 124 DRIAADRLSHASLLEAASLS---PSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ 195 (384)
T ss_dssp CEEEEETTCCHHHHHHHHTS---SSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred cEEEEcccccHHHHHHHHHc---CCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 99999999999998877665 999999884 4899999998763 789999999999999999999999999
Q ss_pred hcCcEEEEecccccCccc------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCcccccc-CCCC
Q psy8850 164 SKGVIFHCDAAQAVGKID------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR-SGTL 236 (397)
Q Consensus 164 ~~gi~livD~a~~~~~~~------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 236 (397)
+||+++|+|++|+.+... .+....++|+++.|+||.+|+.| |+++++++..+.+...... +. .++.
T Consensus 196 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~------~~~~~~~ 268 (384)
T 1bs0_A 196 QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFARH------LIYSTSM 268 (384)
T ss_dssp HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCHH------HHSSBCC
T ss_pred HcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhchh------hhcCCCC
Confidence 999999999999865421 11111357999999999778877 9999987655444332111 11 1245
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--C
Q psy8850 237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--D 312 (397)
Q Consensus 237 ~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~ 312 (397)
+...+.++.++++.+.+ +.+++.+++.++++++.+.|++ + ++.+... . +.++++.++. .+..++.+.|. |
T Consensus 269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~l~~~l~~~g 342 (384)
T 1bs0_A 269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLADS-C---SAIQPLIVGDNSRALQLAEKLRQQG 342 (384)
T ss_dssp CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEECSC-C---SSBCCEEEESHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCcccCC-C---CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 66667777778887654 5678899999999999999998 5 6666532 2 3455566653 34566777765 8
Q ss_pred cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
|.+.++..+.. +...+++||+++..++++++++++++|+++
T Consensus 343 i~v~~~~~~~~----------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 343 CWVTAIRPPTV----------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EECCEECTTSS----------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cEEEeecCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 99888754321 112478999999888999999999999864
No 87
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=4.5e-32 Score=259.49 Aligned_cols=330 Identities=14% Similarity=0.079 Sum_probs=234.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCC-------CC--cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChh-HH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPAS-------RN--HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGAT-ES 70 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t-~a 70 (397)
||++++++.|+.|.+++.+.....+.++.. .. +..+....+..+++++++++++|++++ +++|+|+| .+
T Consensus 84 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a 162 (456)
T 2z67_A 84 PKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMS 162 (456)
T ss_dssp TTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHH
T ss_pred ccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHH
Confidence 689999999999999988744221222211 00 111223556778899999999999876 99999999 56
Q ss_pred HHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc---CCCCCCCHHHHHHHh-c----CCceEEEE
Q psy8850 71 NNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNNGLITLSQLEEKI-C----SDTILVSV 142 (397)
Q Consensus 71 ~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~---~~~~~~d~~~l~~~i-~----~~~~~v~~ 142 (397)
+.+++.++... .++++|+++.++|+++...+... |++++.++. ++++.+|+++|++++ + .++.+|++
T Consensus 163 ~~~al~~~~~~--~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~ 237 (456)
T 2z67_A 163 ISLCLSAARKK--YGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 237 (456)
T ss_dssp HHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEECCCcHHHHHHHHHc---CCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEE
Confidence 66566655421 16788999999999988777665 999999887 667889999999999 5 36778888
Q ss_pred ecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc---ccccCcc--cccEEEecccc-ccCCCCceEEEEe-cCCC
Q psy8850 143 MLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY--KVDLMSFSAHK-IYGPKGIGALYIR-RNPR 215 (397)
Q Consensus 143 ~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~---~~~~~~~--~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~ 215 (397)
+.++|+||.+.|+++|.++|+++|+++|+|++|+.... +.+...+ ++|++++|+|| +++|.|+|+++++ ++..
T Consensus 238 ~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~ 317 (456)
T 2z67_A 238 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI 317 (456)
T ss_dssp ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHH
T ss_pred eCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHH
Confidence 99999999999999999999999999999998874433 3333223 79999999999 6788899999995 3344
Q ss_pred CccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCC
Q psy8850 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIP 291 (397)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~ 291 (397)
..+.+...++ .+....+++.+++..+ .++++++.++..++++++.+.|++ ++ ++.+..++
T Consensus 318 ~~l~~~~~g~----------~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~v~~~~----- 381 (456)
T 2z67_A 318 KEISLSYPGR----------ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVE----- 381 (456)
T ss_dssp HHHHTTSCSC----------BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCCBCCCC-----
T ss_pred hhcCcCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCEecCCC-----
Confidence 4443333321 1111244454555554 457888999999999999999998 64 65555433
Q ss_pred ceEEEEe--cCCChHHHHHHhC--Cc---Eec------ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 292 HNLNISF--NFIEGESLLMAIK--DI---AVS------SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 292 ~~~~~~~--~~~~~~~~~~~l~--~i---~~~------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
.++.+.+ ++. ..++...|. ++ .+. .|.+|.. ...+++|++++.++++++
T Consensus 382 ~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~-----------------~~~~~vr~s~~~~~t~ee 443 (456)
T 2z67_A 382 SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT-----------------YTHDYIVMNAAIGVRTED 443 (456)
T ss_dssp CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSC-----------------CSCCEEEEECCTTCCHHH
T ss_pred CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccc-----------------cCcchhhhhhhcCCCHHH
Confidence 3344555 332 356766665 43 222 0111111 124789999999899999
Q ss_pred HHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKV 370 (397)
Q Consensus 359 i~~~~~~l~~~~ 370 (397)
||+++++|++++
T Consensus 444 id~~l~~L~~~~ 455 (456)
T 2z67_A 444 IVNSVSKLEKIL 455 (456)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 88
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=3.4e-32 Score=257.05 Aligned_cols=324 Identities=17% Similarity=0.170 Sum_probs=234.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY 82 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~ 82 (397)
+++.+.+++.+.+.... .. .. |.......++++.+++++ | +++++|++|+|+++|+.+++.++.
T Consensus 50 ~~~~v~~a~~~~~~~~~---~~-~~---y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~--- 119 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEP---KS-VM---YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI--- 119 (407)
T ss_dssp CHHHHHHHHHHHHHHCG---GG-GS---CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHhhcc---cc-cc---CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc---
Confidence 56889999998886521 00 11 111123456677777776 8 466789999999999999999987
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----C--CceEE-EEecccCcccccccH
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVIQPI 155 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~--~~~~v-~~~~~~~~tG~~~~l 155 (397)
++|++|++..++|+++...+... |.+++.+|.++++ +|+++|+++++ + ++++| ++++++||||.+.|.
T Consensus 120 -~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~ 194 (407)
T 2zc0_A 120 -DPGDVVITENPSYINTLLAFEQL---GAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSM 194 (407)
T ss_dssp -CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCH
T ss_pred -CCCCEEEEeCCChHHHHHHHHHc---CCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCH
Confidence 78999999999999988776655 9999999987665 89999999998 6 78887 578999999999997
Q ss_pred H---HHHHHHHhcCcEEEEecccccCcc----ccccCcc---cccEEEeccccccCCC-CceEEEEecCCCCcccccccc
Q psy8850 156 L---EIGELCRSKGVIFHCDAAQAVGKI----DINIQNY---KVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHG 224 (397)
Q Consensus 156 ~---~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~---~~d~~~~s~~K~~g~~-g~g~~~~~~~~~~~~~~~~~~ 224 (397)
+ +|+++|++||+++|+|++|+.+.. ..++..+ +.++++.|++|.+|+. .+|+++++++..+.+......
T Consensus 195 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~ 274 (407)
T 2zc0_A 195 ERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQP 274 (407)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHh
Confidence 6 899999999999999999985432 1122222 4568899999966631 379999886555444433221
Q ss_pred CCccccccCCCCchhHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850 225 GGHEYGLRSGTLATHQIVGMGEAFRLA--R-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~al~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (397)
... ..+.....++.++++.. . +++++..+++.++++++.+.|++.++++.+..+.. +.++++.++ +
T Consensus 275 ------~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~ 344 (407)
T 2zc0_A 275 ------IDF-CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIA---GMFVMFFLPEG 344 (407)
T ss_dssp ------TTS-SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSB---SSEEEEECSTT
T ss_pred ------hcC-CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCC---cEEEEEEcCCC
Confidence 111 22444444555566542 3 45677888889999999999987446665544322 446677775 3
Q ss_pred CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.+..++.+.|. ||.+.+|..|.... ...+++||+++.. +++++++++++|+++++++
T Consensus 345 ~~~~~l~~~l~~~~gi~v~~g~~~~~~~---------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 345 ADGISFANELMEREGVVVVPGKPFYTDE---------------SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp CCHHHHHHHHHHHTCEECBCSGGGCSSS---------------CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCeEEECchhccCCC---------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 46777877774 89999987665310 1237899999975 8999999999999998765
No 89
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=5.8e-31 Score=245.39 Aligned_cols=307 Identities=13% Similarity=0.063 Sum_probs=230.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH------hCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++++.+.+++.+.+...... .. .|.... . .++++.++++ +++++++|++++|+++|+++++.++.
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~-~~-~y~~~~----~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-- 113 (369)
T 3cq5_A 43 PPSEALVADLVATVDKIATE-LN-RYPERD----A-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-- 113 (369)
T ss_dssp CCCHHHHHHHHHHHHHHGGG-TT-SCCCTT----C-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhcccc-cc-cCCCcc----H-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc--
Confidence 46899999999988652100 01 121111 1 3566666666 45567789999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++||+|+++.++|+++...+... |.+++.+|.++++.+|++++++++++ ++++|++++++||||.+.|.+++.+
T Consensus 114 --~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (369)
T 3cq5_A 114 --GPGRTALGFQPSYSMHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVER 188 (369)
T ss_dssp --STTCEEEEEESSCTHHHHHHHHT---TCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred --CCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 78999999999999998877666 99999999887778999999999987 8999999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCccc---ccc-Cccc-ccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850 161 LCRSKGVIFHCDAAQAVGKID---INI-QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~---~~~-~~~~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
+|+.+++++|+|++|+.+... .+. ...+ .++++.|+||.+|+.| +|+++++++..+.+..... .
T Consensus 189 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~---------~ 259 (369)
T 3cq5_A 189 IINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRL---------P 259 (369)
T ss_dssp HHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSC---------T
T ss_pred HHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCC---------C
Confidence 999999999999999855432 222 2234 6799999999666445 6999998655444433221 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-- 311 (397)
Q Consensus 234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 311 (397)
.+.+.....+..++++. .+++++..+++.++++++.+.|++ .++.+... . +.++++.++ .+..++.+.|.
T Consensus 260 ~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~---~~~~~~~~~-~~~~~l~~~l~~~ 331 (369)
T 3cq5_A 260 YHLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEE--LGYAVVPS-E---SNFVFFGDF-SDQHAAWQAFLDR 331 (369)
T ss_dssp TCSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHH--HTCEEECC-S---SSEEEEECC-SSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCEECCC-C---CeEEEEECC-CCHHHHHHHHHHC
Confidence 23555556666566764 345778889999999999999988 36766632 2 345666665 45667777775
Q ss_pred CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
||.+.+|. . ++++||+++ +++++++++++|++++
T Consensus 332 gi~v~~~~--~--------------------~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 332 GVLIRDVG--I--------------------AGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp TEECBCCS--C--------------------TTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CEEEEECC--C--------------------CCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 88887761 0 278999997 7899999999999875
No 90
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=2.5e-32 Score=259.28 Aligned_cols=329 Identities=15% Similarity=0.110 Sum_probs=235.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCC-CcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADP-REIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++|+.+++++.+.+.... ... .|.......+....+.+.+.+.+| +++ ++|++|+|+++|+.+++.++. +
T Consensus 41 ~~~~~v~~a~~~~~~~~~--~~~-~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~----~ 113 (422)
T 3fvs_A 41 PPPDFAVEAFQHAVSGDF--MLN-QYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV----D 113 (422)
T ss_dssp CCCHHHHHHHHHHHHSCG--GGG-SCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhCCC--ccC-CCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc----C
Confidence 478999999999887521 000 121111123344445555555555 445 589999999999999999887 7
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC----C--------CCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----N--------GLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~----~--------~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
+|++|++..++|+++...+... |.+++.+|.+. + +.+|++++++++++++++|++++++||||.+
T Consensus 114 ~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~ 190 (422)
T 3fvs_A 114 EGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKV 190 (422)
T ss_dssp TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCC
T ss_pred CCCEEEEcCCCchhhHHHHHHc---CCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcC
Confidence 8999999999999998877766 99999999875 3 3689999999999999999999999999999
Q ss_pred cc---HHHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccc
Q psy8850 153 QP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE 219 (397)
Q Consensus 153 ~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~ 219 (397)
.| +++|+++|++||+++|+|++|+... .+.++.. .+.++++.|++|.+|+.| +|+++++++....+.
T Consensus 191 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~ 270 (422)
T 3fvs_A 191 FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR 270 (422)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHH
Confidence 95 7899999999999999999998422 1222221 256688999999666444 799888766554443
Q ss_pred cccccCCccccccCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292 (397)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 292 (397)
..... ...+.+.....++.++++. ..++++++.+++.++++++.+.|++ + ++.+..+.. +.
T Consensus 271 ~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~ 338 (422)
T 3fvs_A 271 TVHQN-------SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS-V-GLKPIIPQG---SY 338 (422)
T ss_dssp HHHHT-------TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCSB---SS
T ss_pred HHHhh-------ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---ee
Confidence 32211 1224455666666667764 2345788899999999999999998 4 777665533 44
Q ss_pred eEEEEecCC----C----------hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850 293 NLNISFNFI----E----------GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (397)
Q Consensus 293 ~~~~~~~~~----~----------~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~ 355 (397)
++++.++.. + ..++...+ . ||.+.+|..|... . ....+.+++||+++. +
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~------~------~~~~~~~~iRis~~~--~ 404 (422)
T 3fvs_A 339 FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV------P------HQKHFDHYIRFCFVK--D 404 (422)
T ss_dssp EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH------H------HHTTSCSEEEEECCC--C
T ss_pred EEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC------c------CCCCCCCeEEEEecC--C
Confidence 556665421 1 33565553 2 9999999877540 0 011235899999986 9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8850 356 EKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 356 ~~~i~~~~~~l~~~~~~ 372 (397)
++++++++++|++++++
T Consensus 405 ~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 405 EATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988754
No 91
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=4.2e-31 Score=248.70 Aligned_cols=323 Identities=11% Similarity=0.001 Sum_probs=236.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC---CCC-cEEEeCChhHHHHHHHHHhHhhhc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA---DPR-EIIWTSGATESNNLAIKGAAHFYK 83 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~-~i~~~~g~t~a~~~~l~~l~~~~~ 83 (397)
++|+.+++++.+.+.....++.. ....+....+.+.+.+.+|. +++ +|++|+|+++|+.+++.++.
T Consensus 43 ~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~---- 112 (396)
T 3jtx_A 43 PTPKVITDALTASLHELEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL---- 112 (396)
T ss_dssp CCCHHHHHHHHHTGGGGGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHhhhccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh----
Confidence 46889999999888654433322 11234555566666666674 477 99999999999999999887
Q ss_pred cCC-----CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC-CCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850 84 KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG-LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (397)
Q Consensus 84 ~~g-----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~ 157 (397)
++| ++|+++.++|+++...+... |.+++.+|.++++ .+|++++++++++++++|++++++||||.++|.++
T Consensus 113 ~~g~~~~~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 189 (396)
T 3jtx_A 113 NPVSDGIKPAIVSPNPFYQIYEGATLLG---GGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDG 189 (396)
T ss_dssp CC---CCCCEEEEEESCCHHHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCccCCCEEEEcCCCcHhHHHHHHHc---CCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHH
Confidence 675 79999999999998877766 9999999996544 68999999999989999999999999999998654
Q ss_pred ---HHHHHHhcCcEEEEecccccCcc----ccccC--------cccccEEEeccccccCCCC--ceEEEEecCCCCcccc
Q psy8850 158 ---IGELCRSKGVIFHCDAAQAVGKI----DINIQ--------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 220 (397)
Q Consensus 158 ---i~~l~~~~gi~livD~a~~~~~~----~~~~~--------~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~ 220 (397)
|+++|++||+++|+|++|+.... +.... ..+.++++.|++|.+|..| +|+++.+++....+..
T Consensus 190 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 269 (396)
T 3jtx_A 190 WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL 269 (396)
T ss_dssp HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH
Confidence 89999999999999999984321 21110 2467899999999555434 7888887655554443
Q ss_pred ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (397)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
... ....+.+.....++.++++. .+++.+..+++.++++++.+.|++ . +.+..+.. +.++++.++.
T Consensus 270 ~~~-------~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~--~~~~~~~~---~~~~~~~~~~ 335 (396)
T 3jtx_A 270 YRT-------YHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQ-V--FDVKLPDA---SFYIWLKVPD 335 (396)
T ss_dssp HHH-------HHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTT-T--SCCCCCSS---SSEEEEECTT
T ss_pred HHh-------hcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-c--CCccCCCe---eEEEEEECCC
Confidence 221 11234566666666666653 346788889999999999999987 3 22232222 4567778876
Q ss_pred CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 301 ~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.+..++...| + ||.+.+|..|..... ......+++||+++. +++++++++++|++++
T Consensus 336 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~-----------~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 336 GDDLAFARNLWQKAAIQVLPGRFLARDTE-----------QGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp SCHHHHHHHHHHHHCEECEEGGGGCCCCT-----------TCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHCCEEEeCChHhCCccc-----------ccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 6777888777 3 999999987765210 011235899999986 8999999999998764
No 92
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=5.2e-31 Score=245.25 Aligned_cols=311 Identities=14% Similarity=0.086 Sum_probs=230.6
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
.+++.+.+++.+.+..... |.. ....++++.+++++++++++|++++|+++|+.+++.++ +|+
T Consensus 37 ~~~~~v~~a~~~~~~~~~~------y~~-----~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~------~gd 99 (364)
T 1lc5_A 37 GMPVSVKRALIDNLDCIER------YPD-----ADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL------KPR 99 (364)
T ss_dssp CCCHHHHHHHHHTGGGGGS------CCC-----TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH------CCS
T ss_pred CCCHHHHHHHHHHHHHhhc------CCC-----CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc------CCC
Confidence 3678999999988754221 111 13578999999999998889999999999999999876 348
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCC-HHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHH
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT-LSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCR 163 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d-~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~ 163 (397)
+|++..++|+++...+... |.+++.+|.+....++ ++++.+.+++++++|++++++||||.++| +++|+++|+
T Consensus 100 ~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 176 (364)
T 1lc5_A 100 RAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCK 176 (364)
T ss_dssp EEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCcHHHHHHHHHc---CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence 9999999999998877766 9999999987522234 57677777778999999999999999999 789999999
Q ss_pred hcCcEEEEecccccCcc----cccc-CcccccEEEeccccccCCCC--ceEEE-EecCCCCccccccccCCccccccCCC
Q psy8850 164 SKGVIFHCDAAQAVGKI----DINI-QNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT 235 (397)
Q Consensus 164 ~~gi~livD~a~~~~~~----~~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (397)
+||+++|+|++|+.+.. ..+. ...+.++++.|+||.+|+.| +|+++ .+++..+.+..... ..+
T Consensus 177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~---------~~~ 247 (364)
T 1lc5_A 177 SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM---------PWS 247 (364)
T ss_dssp HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC---------TTC
T ss_pred hcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC---------CCC
Confidence 99999999999984332 1222 23467899999999666445 69998 77655544443221 124
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DI 313 (397)
Q Consensus 236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i 313 (397)
.+.....++.++++. .+++++..+++.++++++.+.|++ ++++.+..+ . +.++++.++. +..++.+.|. ||
T Consensus 248 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---g~~~~~~~~~-~~~~l~~~l~~~gi 320 (364)
T 1lc5_A 248 VNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPG-R---ANYLLLRCER-EDIDLQRRLLTQRI 320 (364)
T ss_dssp SCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCC-S---SSEEEEEESC-TTCCHHHHHHTTTE
T ss_pred CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhc-CCCCEECCC-C---CeEEEEECCC-cHHHHHHHHHHCCc
Confidence 555666666666665 346788889999999999999998 788876532 2 3455667663 2345666654 89
Q ss_pred EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
.+.+|..|.. ...+++||+++ +.+++++++++|++++++++
T Consensus 321 ~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 321 LIRSCANYPG-----------------LDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp ECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred EEeeCcccCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 9998865542 12378999986 68999999999998876653
No 93
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.6e-31 Score=249.65 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHh-CCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850 42 AIEKARNEVAQLI-YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120 (397)
Q Consensus 42 ~~~~~~~~la~~~-~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~ 120 (397)
...++++.+++++ +++++++++++|+++|+.+++.++. ++||+|++..+.|+++...+... |.+++.+|.+.
T Consensus 64 g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~ 136 (375)
T 3op7_A 64 GSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIPKSL---GAEVDLWQIEE 136 (375)
T ss_dssp CCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHHHHT---TCEEEEEEEEG
T ss_pred ChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccc
Confidence 3578899999988 4777899999999999999999887 79999999999999998877766 99999999873
Q ss_pred --CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCccc---cccCcccccEE
Q psy8850 121 --NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID---INIQNYKVDLM 192 (397)
Q Consensus 121 --~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~---~~~~~~~~d~~ 192 (397)
++.+|++++++++++++++|++++++||||.++| +++|+++|++||+++|+|++|+..... .-....+.+++
T Consensus 137 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 216 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA 216 (375)
T ss_dssp GGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred cCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence 4458999999999999999999999999999999 899999999999999999998853321 11112356688
Q ss_pred EeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 193 SFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270 (397)
Q Consensus 193 ~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~ 270 (397)
+.|++|.+|..| +|+++++++..+.+...... ...+.+.....+...+++...+.+++..+++.++++++.
T Consensus 217 ~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 289 (375)
T 3op7_A 217 VNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDY-------TMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILD 289 (375)
T ss_dssp EEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGG-------TTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEChhhcCCcccceEEEEeCHHHHHHHHHHHhh-------hccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999665434 69998876655555433221 112334444455556677655567788888899999999
Q ss_pred HHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850 271 NGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 346 (397)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 346 (397)
+.|++ .+++.+..+.. +...++.++ ..+..++...+ . ||.+.+|..|.. .+++
T Consensus 290 ~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~i 346 (375)
T 3op7_A 290 QWIEE-EPLVSYIRPAV---VSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-------------------DGYV 346 (375)
T ss_dssp HHHHH-CTTEEECCCSS---SSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEE
T ss_pred HHHhh-CCCceEecCCC---eEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCeE
Confidence 99998 78887765543 333445554 34567777766 3 999998865542 3889
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 347 RFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
|++++. +.+++++++++|.+++++++
T Consensus 347 Ri~~~~--~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 347 RLGFAC--EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 999885 56999999999999987653
No 94
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=2.3e-31 Score=250.61 Aligned_cols=335 Identities=12% Similarity=0.076 Sum_probs=228.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
|+.++++..+++.+++.. +.++.. .+.++....+...++++++++++|.+ +.++++||++|+.+++.++.
T Consensus 31 d~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~-- 100 (398)
T 2rfv_A 31 IFQTSTFVFDSAEQGAAR-----FALEES-GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC-- 100 (398)
T ss_dssp CCCCSBCCCSSHHHHHHH-----C------CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred CcCCCccccCCHHHHHHh-----hcCCCC-CCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--
Confidence 455555556666666552 222222 34444445678899999999999987 56677778899999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++|++|+++.++|+++...+..+ ...|.+++.+|.+ |++++++++++++++|++++++||||.+.|+++|.+
T Consensus 101 --~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~ 173 (398)
T 2rfv_A 101 --QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAG 173 (398)
T ss_dssp --CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred --CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHH
Confidence 78999999999999998877432 3349999999875 899999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCccccccCcccccEEEeccccc-cCCCC--ceEEEEecCCCC-ccccccccCCccccccCCCC
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTL 236 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (397)
+|++||+++|+|++|+.+..... ..+++|+++.|+||. .++.+ .|+++++++... .+.....+ ++.++.
T Consensus 174 l~~~~~~~li~De~~~~~~~~~~-~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~------~~~~~~ 246 (398)
T 2rfv_A 174 IAHQQGALLVVDNTFMSPYCQQP-LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD------ITGGCM 246 (398)
T ss_dssp HHHHTTCEEEEECTTTCTTTCCG-GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH------TTCCCC
T ss_pred HHHHcCCEEEEECCCcccccCCc-hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHh------CCCCCC
Confidence 99999999999999997664322 234789999999995 45544 499999876544 33332221 112345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe--------------CCCCCCCCceEEEEecCC-
Q psy8850 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN--------------GDMNNRIPHNLNISFNFI- 301 (397)
Q Consensus 237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~- 301 (397)
+....++..++++.+. ...++..++.+.+.+.|++ .+.+... .+.....++++.+.+++.
T Consensus 247 ~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 321 (398)
T 2rfv_A 247 SPFNAWLTLRGVKTLG----IRMERHCENALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL 321 (398)
T ss_dssp CHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred CHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH
Confidence 5555555556665433 3344555666777777766 4332221 111112367777887642
Q ss_pred -ChHHHHHHhC--CcEecccCccCCC------C--CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 302 -EGESLLMAIK--DIAVSSGSACTSA------S--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 302 -~~~~~~~~l~--~i~~~~g~~~~~~------~--~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
+...+.+.+. ++.+..|..++.. . ..++..+...|+. .+.|||+++..++++++++++++|+++
T Consensus 322 ~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 322 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGIT----DGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 2334444443 5666667543210 0 0022334455544 389999999999999999999988754
No 95
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=100.00 E-value=2.1e-31 Score=250.91 Aligned_cols=329 Identities=14% Similarity=0.104 Sum_probs=234.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHHHHhH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIKGAA 79 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l~~l~ 79 (397)
++++++++|+.+++++.++.....+ .....+...+...++++++++++|++. ++|++ |+|+|+|+++++.++.
T Consensus 44 ~~~~~~~~~~~v~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~ 118 (398)
T 2fyf_A 44 FGSGPSKVRLEQLQTLTTTAAALFG-----TSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI 118 (398)
T ss_dssp CCSSSCCCCHHHHHGGGTTTTTTTT-----SCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC
T ss_pred ccCCCCCCCHHHHHHHhhcCCCccC-----cCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc
Confidence 4567778899999998763111000 111223445678899999999999973 58998 9999999999999986
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHHHhhC--CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRKLEND--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~--g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~ 157 (397)
++| .++++...|..... ...... |.+++.++.+. +..+.. .+++++++|++++++||||.+.|+++
T Consensus 119 ----~~g-v~~v~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~-g~~~~~----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 119 ----DKR-SLHLTYGEFSAKFA--SAVSKNPFVGEPIIITSDP-GSAPEP----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp ----SSC-EEEEECSHHHHHHH--HHHHHCTTSCCCEEEECCT-TCCCCC----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred ----CCC-eEEEeCCHHHHHHH--HHHHHhCCCCceEEEecCC-CCCCCc----cccCCCCEEEEeCcCCCcceecchHH
Confidence 565 33444444432211 122222 77888888873 333222 25678999999999999999999998
Q ss_pred HHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCC-CceEEEEecCCCCcccc----------ccccCC
Q psy8850 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEA----------QIHGGG 226 (397)
Q Consensus 158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-g~g~~~~~~~~~~~~~~----------~~~~~~ 226 (397)
|.++ +|+++|+|++|+.+..++++. ++|++++|+||++|+. |+|+++++++....+.. ...++.
T Consensus 187 i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 261 (398)
T 2fyf_A 187 PEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI 261 (398)
T ss_dssp CTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred hhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence 8776 899999999999888776654 4899999999966655 68999998766554421 111110
Q ss_pred cc----ccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEEEeC-CCCCCCCceEEEEec
Q psy8850 227 HE----YGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFN 299 (397)
Q Consensus 227 ~~----~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (397)
.. .....++++...++++.++++.+.+. ++++.+++.++++++.+.|++ ++++.+.. .+....+.++++.++
T Consensus 262 ~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T 2fyf_A 262 AVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVGTIDFV 340 (398)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEEEEEEC
T ss_pred HhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEEEEECC
Confidence 00 12445678888888888899877653 889999999999999999998 77888774 221122347778775
Q ss_pred -CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 300 -FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 300 -~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.+..++.+.|. ||.+.+|... .+++++||+++.+++++|+++++++|++++++
T Consensus 341 ~~~~~~~l~~~L~~~gI~v~~g~~~-------------------~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 341 DDVDAGTVAKILRANGIVDTEPYRK-------------------LGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp TTSCHHHHHHHHHHTTCBCCSCCTT-------------------TCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCcEEecCccc-------------------CCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 456778888776 8888765110 11378999999889999999999999988754
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=3.4e-31 Score=249.73 Aligned_cols=323 Identities=16% Similarity=0.162 Sum_probs=233.7
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
++|.+++++.+++.....+++. +...+...+...++++.++++++.+ +++++++|++ ++..++..+... .+|++
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sG~~-a~~~~~~~l~~~--~~gd~ 134 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQKE-AALVFSSAYN-ANDATLSTLRVL--FPGLI 134 (401)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTCS-EEEEESCHHH-HHHHHHHHHHHH--STTCE
T ss_pred CCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCCC-cEEEECCcHH-HHHHHHHHHhcC--CCCCE
Confidence 4678999999999874444332 2222333457889999999999975 5677766554 777777765321 47899
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS 164 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~ 164 (397)
|+++.++|+++...+... |.+++.+|.+ |+++++++++ +++++|++++++||||.+.|+++|.++|++
T Consensus 135 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 206 (401)
T 2bwn_A 135 IYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE 206 (401)
T ss_dssp EEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEECchhhHHHHHHHHHc---CCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence 999999999999887665 8999999875 7899998887 578999999999999999999999999999
Q ss_pred cCcEEEEecccccCcccc------ccCcc--cccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850 165 KGVIFHCDAAQAVGKIDI------NIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236 (397)
Q Consensus 165 ~gi~livD~a~~~~~~~~------~~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (397)
||+++|+|++|+.|.... ..... ..|+++.|++|.+|..| |+++.+++....+...... ..+..+++
T Consensus 207 ~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~----~~~~~~~~ 281 (401)
T 2bwn_A 207 FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAPG----FIFSTSLP 281 (401)
T ss_dssp HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCHH----HHTSBCCC
T ss_pred cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-CEEecCHHHHHHHHHhCcC----ceecCCCC
Confidence 999999999999543210 11111 35899999999777656 8888875443333221110 11233444
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHh-C--
Q psy8850 237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-K-- 311 (397)
Q Consensus 237 ~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~-- 311 (397)
+ ..++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+. .+++++.++. .+..++.+.| .
T Consensus 282 ~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~~ 354 (401)
T 2bwn_A 282 P-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPIIDHG----SHIVPVVIGDPVHTKAVSDMLLSDY 354 (401)
T ss_dssp H-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCS----SSCEEEECCCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC----CCeEEEEeCChHHHHHHHHHHHhcC
Confidence 4 666677788887654 4688899999999999999998 5 66655432 3466777753 3456677766 2
Q ss_pred CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
||.+.++..+.. +.+.+++|++++.+++++++++++++|+++++++
T Consensus 355 gi~v~~~~~~~~----------------~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 355 GVYVQPINFPTV----------------PRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CEECCEECTTTS----------------CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CEEEeecCCCCC----------------CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 898887643211 0123689999998899999999999999887543
No 97
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=256.81 Aligned_cols=320 Identities=14% Similarity=0.125 Sum_probs=232.6
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++|+.+.+++.+++.... .. .|... ....++++.+++++ | .++++|++|+|+++|+.++++++.
T Consensus 70 ~~~~~v~~a~~~~~~~~~---~~-~Y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~-- 139 (447)
T 3b46_A 70 SPPQFAIKEAQKALDIPM---VN-QYSPT----RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL-- 139 (447)
T ss_dssp CCCHHHHHHHHHHTTSGG---GG-SCCCT----TCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhCcC---CC-CCCCC----CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc--
Confidence 367899999998886411 00 12111 12345666666665 4 355689999999999999999987
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC------------CCCCCHHHHHHHhcCCceEEEEecccCcc
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNNEI 149 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~~~~~t 149 (397)
++||+|++..+.|+++...+... |.+++.+|.+. ++.+|+++|++++++++++|++++++|||
T Consensus 140 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 214 (447)
T 3b46_A 140 --NAGDEVIVFEPFFDQYIPNIELC---GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPI 214 (447)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred --CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCC
Confidence 78999999999999998887766 99999998864 35689999999999899999999999999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEecccccCcc---ccccC-----cccccEEEeccccccCCCC--ceEEEE-ecCCC
Q psy8850 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ-----NYKVDLMSFSAHKIYGPKG--IGALYI-RRNPR 215 (397)
Q Consensus 150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~~---~~~~~-----~~~~d~~~~s~~K~~g~~g--~g~~~~-~~~~~ 215 (397)
|.++| +++|+++|++||++||+|++|+.... ...+. ..+.++++.|++|.+|+.| +|++++ +++..
T Consensus 215 G~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~ 294 (447)
T 3b46_A 215 GKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELL 294 (447)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHH
Confidence 99976 78899999999999999999984321 11121 2367999999999666555 899999 76554
Q ss_pred CccccccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCce
Q psy8850 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN 293 (397)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 293 (397)
+.+..... ....+.+.....++.++++.. .++++++.++++++++++.+.|++ + ++.+..+.. +.+
T Consensus 295 ~~l~~~~~-------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~ 362 (447)
T 3b46_A 295 SYAAKAHT-------RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L-GLPYTAPEG---TYF 362 (447)
T ss_dssp HHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H-TCCEECCSB---SSE
T ss_pred HHHHHHHh-------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEE
Confidence 44433211 112234555566666777765 345788899999999999999998 5 666664433 445
Q ss_pred EEEEecCC----------------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850 294 LNISFNFI----------------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 354 (397)
Q Consensus 294 ~~~~~~~~----------------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 354 (397)
+++.++.. +..++...|. ||.+.+|..|.... ......++|||++..
T Consensus 363 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~------------~~~~~~~~iRls~~~-- 428 (447)
T 3b46_A 363 VLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKE------------HEKAAENLLRFAVCK-- 428 (447)
T ss_dssp EEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGG------------GGGGGTTEEEEECCS--
T ss_pred EEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCC------------ccCCCCCEEEEEEeC--
Confidence 66676532 3446776552 89999987665310 001124889999985
Q ss_pred CHHHHHHHHHHHHH
Q psy8850 355 TEKEIDFTIKLLKM 368 (397)
Q Consensus 355 ~~~~i~~~~~~l~~ 368 (397)
+++++++++++|++
T Consensus 429 ~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 429 DDAYLENAVERLKL 442 (447)
T ss_dssp CHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 79999999998876
No 98
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=1.1e-30 Score=242.13 Aligned_cols=280 Identities=18% Similarity=0.170 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (397)
Q Consensus 43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~ 121 (397)
..++++.+++++++++++|++++|+++|+++++.++. ++| |+|+++.++|+++...+... |.+++.+|.+++
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~ 132 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDN 132 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTT
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHc---CCEEEEeeCCCC
Confidence 5789999999999988899999999999999999887 788 99999999999999888777 999999998877
Q ss_pred CCCCHHHHHHHhcCCceEEEEecccCcccccccHHH---HHHHHHhcCcEEEEecccccCcc--c-ccc-CcccccEEEe
Q psy8850 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGKI--D-INI-QNYKVDLMSF 194 (397)
Q Consensus 122 ~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~---i~~l~~~~gi~livD~a~~~~~~--~-~~~-~~~~~d~~~~ 194 (397)
+.+|+++++++++ ++++|++++++||||.+.|.++ |+++|+ +|+++|+|++|+.... + .++ ...+.++++.
T Consensus 133 ~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 133 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence 7899999999998 8999999999999999999655 555566 9999999999984331 1 122 2235689999
Q ss_pred ccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy8850 195 SAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYN 271 (397)
Q Consensus 195 s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~ 271 (397)
|++|.+|+.| +|+++++++..+.+...... .+.+.....+..++++... +++++..++++++++++.+
T Consensus 211 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 281 (356)
T 1fg7_A 211 TLSKAFALAGLRCGFTLANEEVINLLMKVIAP---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA 281 (356)
T ss_dssp ESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCchhhhEEEEeCHHHHHHHHHhcCC---------CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999777555 69999987655444332211 1344455555545665321 2367888999999999999
Q ss_pred HHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc-cCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850 272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRF 348 (397)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (397)
.|++ ++++....+.. +.++++.++ +..++.+.|. ||.+.+ |..|.. .+++||
T Consensus 282 ~L~~-~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~-------------------~~~iRi 336 (356)
T 1fg7_A 282 ALKE-IPCVEQVFDSE---TNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSL-------------------SGCLRI 336 (356)
T ss_dssp HHHH-STTEEEECCCS---SSEEEEEET--THHHHHHHHHHTTEECEECTTSTTC-------------------TTEEEE
T ss_pred HHHh-CCCceEECCCC---CeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCC-------------------CCeEEE
Confidence 9998 76643333322 456667775 5667777775 899988 754432 268999
Q ss_pred eeCCCCCHHHHHHHHHHHHH
Q psy8850 349 TIGRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 349 ~~~~~~~~~~i~~~~~~l~~ 368 (397)
+++ +++++++++++|++
T Consensus 337 s~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 337 TVG---TREESQRVIDALRA 353 (356)
T ss_dssp ECC---CHHHHHHHHHHHHT
T ss_pred EeC---CHHHHHHHHHHHHh
Confidence 997 58999999999875
No 99
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=2e-30 Score=249.38 Aligned_cols=335 Identities=14% Similarity=0.133 Sum_probs=236.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
...+.+.+++.+.+.. .+|.. ....+....+...++++++++++|.+. .+++++||++|+.+++.++.....++||
T Consensus 77 ~~~p~v~~~~~~~~~~--~~~~~-~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd 152 (474)
T 1wyu_B 77 KYNPKLHEEAARLFAD--LHPYQ-DPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGE 152 (474)
T ss_dssp CCCCHHHHHHHHTTSS--CCTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHh--cCCCC-chhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCC
Confidence 4457777777765322 13322 111345566888999999999999974 4678899999999877665432224665
Q ss_pred -----EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc-ccHHHHHHH
Q psy8850 88 -----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGEL 161 (397)
Q Consensus 88 -----~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-~~l~~i~~l 161 (397)
+|+++.++|+++..++... |.+++.+|.++++.+|+++|++++++++++|+++++ |++|.+ .++++|+++
T Consensus 153 ~~~r~~Vlv~~~~h~~~~~~~~~~---G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l 228 (474)
T 1wyu_B 153 GRTRRVVLVPDSAHGSNPATASMA---GYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRL 228 (474)
T ss_dssp TTTCCEEEEETTSCTHHHHHHHHT---TCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHH
T ss_pred ccCCCEEEEeCCcChhhHHHHHHC---CCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHH
Confidence 9999999999999887766 999999999888999999999999999999999987 689998 689999999
Q ss_pred HHhcCcEEEEecccccCcc-ccccCcccccEEEecccc-ccCCC-----CceEEEEecCCCCccccccc--cCC------
Q psy8850 162 CRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHK-IYGPK-----GIGALYIRRNPRTRIEAQIH--GGG------ 226 (397)
Q Consensus 162 ~~~~gi~livD~a~~~~~~-~~~~~~~~~d~~~~s~~K-~~g~~-----g~g~~~~~~~~~~~~~~~~~--~~~------ 226 (397)
|++||+++|+|++|+.+.. ..+...+++|++++|+|| +.+|. |+|+++++++....+..... ++.
T Consensus 229 ~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~ 308 (474)
T 1wyu_B 229 CKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDF 308 (474)
T ss_dssp HHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEEC
T ss_pred HHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecc
Confidence 9999999999999975543 223334478999999999 55452 58999999876655542111 110
Q ss_pred -cc---ccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850 227 -HE---YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (397)
Q Consensus 227 -~~---~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 300 (397)
.. .++..++.+...+.+..++++.+ .+++++..+++.++++++.+.|++ + ++.+..+.. . ...+.+.++ +
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-~-~~~~~~~~~~~ 384 (474)
T 1wyu_B 309 DRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDGP-S-MHEFVAQPPEG 384 (474)
T ss_dssp CCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCSS-C-CSCEEEBCSTT
T ss_pred cCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCCC-c-ceEEEEEcCCC
Confidence 00 12233344444444444444432 346788899999999999999998 5 666532211 1 122344442 3
Q ss_pred CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.+..++.+.|. |+.+ ++..+.. ...+++||+++..++++++++++++|++++++
T Consensus 385 ~~~~~l~~~L~~~Gi~~-~~~~~~~-----------------~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 385 FRALDLAKGLLELGFHP-PTVYFPL-----------------IVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CCHHHHHHHHHHTTCCC-CEESCST-----------------TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHCCccc-ccccccc-----------------ccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 46677887775 6654 2222110 11378999999888999999999999988754
No 100
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=2.8e-30 Score=249.35 Aligned_cols=334 Identities=13% Similarity=0.119 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCChhHHHHHHHHHhHhh
Q psy8850 11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
..+.+.+..++. +....+..+........++++++++++|.+. ..+++|+|||+|+.+++.++...
T Consensus 88 ~~~~~~~~~~~n-----~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~ 162 (486)
T 1js3_A 88 AMLADMLCGAIG-----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK 162 (486)
T ss_dssp HHHHHHHHHHHC-----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----cCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence 345555555542 2221344455566777789999999999975 35899999999999998876532
Q ss_pred hcc-----CC---------C-EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCc------eEE
Q psy8850 82 YKK-----RG---------K-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT------ILV 140 (397)
Q Consensus 82 ~~~-----~g---------~-~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~------~~v 140 (397)
..+ .| + .|+++.++|+++..++..+ |++++.+|+++++.+|+++|++++++++ .+|
T Consensus 163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~---G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~v 239 (486)
T 1js3_A 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239 (486)
T ss_dssp HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhC---CCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEE
Confidence 111 02 2 4889999999999988888 9999999998889999999999998765 388
Q ss_pred EEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccc-ccCc-----ccccEEEecccc-ccCCCCceEEEEecC
Q psy8850 141 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-NIQN-----YKVDLMSFSAHK-IYGPKGIGALYIRRN 213 (397)
Q Consensus 141 ~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-~~~~-----~~~d~~~~s~~K-~~g~~g~g~~~~~~~ 213 (397)
++++++|++|.+.|+++|+++|++||+++|+|++|+.+.... +... .++|++++|+|| +++|.|+|+++++++
T Consensus 240 v~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~ 319 (486)
T 1js3_A 240 VATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319 (486)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCH
Confidence 999999999999999999999999999999999999765422 2211 268999999999 555778999999764
Q ss_pred C--CCcc---ccccccCCc----ccc---cc-CCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q psy8850 214 P--RTRI---EAQIHGGGH----EYG---LR-SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE 279 (397)
Q Consensus 214 ~--~~~~---~~~~~~~~~----~~~---~~-~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 279 (397)
. ...+ ..++.+... ... +. ..+.. ...+++.+++..+ .+++.++.++..++++++.+.|++ +++
T Consensus 320 ~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~ 397 (486)
T 1js3_A 320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPR 397 (486)
T ss_dssp HHHHGGGC------------CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 2 1222 111111100 000 00 01111 1345555666644 457899999999999999999999 889
Q ss_pred EEEeCCCCCCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCC
Q psy8850 280 IYINGDMNNRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFT 354 (397)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~ 354 (397)
+.+..++. ..++.|.+++.+ ..++.+.|. |+.+..+..+ .+.+++|+++. ..+
T Consensus 398 ~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------------------~~~~~lRi~~~~~~~ 455 (486)
T 1js3_A 398 FEVCAEVT---LGLVCFRLKGSDGLNEALLERINSARKIHLVPCRL-------------------RGQFVLRFAICSRKV 455 (486)
T ss_dssp EEECSCCC---SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE-------------------TTEEEEEEECCCTTC
T ss_pred eEEeCCCc---eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEE-------------------CCEEEEEEEeCCCCC
Confidence 99876533 456677775422 356666664 5432221100 12378999974 557
Q ss_pred CHHHHHHHHHHHHHHHHHHHhc
Q psy8850 355 TEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 355 ~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
+.++|++++++|+++++++.+.
T Consensus 456 t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 456 ESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998877653
No 101
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=7.5e-32 Score=257.66 Aligned_cols=341 Identities=11% Similarity=0.038 Sum_probs=232.8
Q ss_pred CHHHHHHHHHHHhhccCC-------CCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHH
Q psy8850 10 DPRVVDKMIPYLRVQFGN-------PASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIK 76 (397)
Q Consensus 10 ~~~v~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~ 76 (397)
++.+.+++.+++.....+ +.+..+..+|.......++++.+++++ ++++++|++|+|+++|+++++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~ 124 (444)
T 3if2_A 45 IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFN 124 (444)
T ss_dssp CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHH
Confidence 566777777777665544 320022233443445677788888877 5677899999999999999999
Q ss_pred HhHhhhccCCC--------------EEEEc-CCCChhhHHHHH---HHhhCCcEEEEeccCC-CC----CCCHHHHHHH-
Q psy8850 77 GAAHFYKKRGK--------------HIITV-QTEHKSVLDSIR---KLENDGFRVTYLKPKN-NG----LITLSQLEEK- 132 (397)
Q Consensus 77 ~l~~~~~~~g~--------------~vl~~-~~~~~s~~~~~~---~~~~~g~~v~~v~~~~-~~----~~d~~~l~~~- 132 (397)
++. ++|| +|+++ .++|+++..... .+...|..+..++.++ +| .+|+++|+++
T Consensus 125 ~l~----~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l 200 (444)
T 3if2_A 125 LFG----GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLP 200 (444)
T ss_dssp HSS----EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCH
T ss_pred HHh----CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHH
Confidence 987 6776 77775 889998875432 2233478888888875 33 6899999998
Q ss_pred --hcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcccc-----ccCcccccEEEeccccc-cC
Q psy8850 133 --ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI-----NIQNYKVDLMSFSAHKI-YG 201 (397)
Q Consensus 133 --i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~-----~~~~~~~d~~~~s~~K~-~g 201 (397)
+++++++|++++++||||.++| +++|+++|++||++||+|++|+.+.... .....+.+++++|+||+ ..
T Consensus 201 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~ 280 (444)
T 3if2_A 201 ALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLP 280 (444)
T ss_dssp HHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCG
T ss_pred HhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCC
Confidence 6788999999999999999999 7889999999999999999998432211 11223678999999995 22
Q ss_pred CCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHhhhcC
Q psy8850 202 PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKE-ELKRILFLQKRLYNGLMESIE 278 (397)
Q Consensus 202 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~-~~~~~~~~~~~l~~~l~~~~~ 278 (397)
+.++|+++.+++....+...... .. ...+.....++..+++.. .....+ ..+.+.++++.+.+.|.+.++
T Consensus 281 G~r~G~~~~~~~l~~~~~~~~~~------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 353 (444)
T 3if2_A 281 GMRTGIIVADAKVIEAVSAMNAV------VN-LAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALG 353 (444)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHH------HH-SSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCceEEEEECHHHHHHHHHHHHh------cc-CCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33478888776554444332211 01 122333333333444321 122333 566777888888888877555
Q ss_pred c--EEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC
Q psy8850 279 E--IYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (397)
Q Consensus 279 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~ 352 (397)
+ +.+..+.. +.++++.++. .+..++...|. ||.+.+|..|..+...++ .....++|||+++.
T Consensus 354 ~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~---------~~~~~~~iRis~~~ 421 (444)
T 3if2_A 354 DYPLMIHKPEG---AIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSD---------YQHAHECIRMSIAA 421 (444)
T ss_dssp SSSEEEECCCB---SSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT---------CSGGGSEEEEESSS
T ss_pred cCCceEecCCc---cEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcc---------cccCCCeEEEEEeC
Confidence 4 55554433 4566777763 56778887776 999999988765221100 01224789999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 353 FTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 353 ~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
++++|++++++|.++++++.+
T Consensus 422 --~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 422 --DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHHHHHHc
Confidence 899999999999999987754
No 102
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=4.5e-30 Score=248.96 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=222.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhh----ccCC-----C-EEEEcCCCChhhH
Q psy8850 33 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----KKRG-----K-HIITVQTEHKSVL 100 (397)
Q Consensus 33 ~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~----~~~g-----~-~vl~~~~~~~s~~ 100 (397)
+..+........++.+++++++|++ .+++++++|||+|+.+++.++.... .++| + +|+++.++|+++.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~ 203 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK 203 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH
Confidence 3334445566777889999999998 6789999999999999999875321 0134 5 8999999999999
Q ss_pred HHHHHHhhCCc-EEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850 101 DSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 101 ~~~~~~~~~g~-~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~ 173 (397)
.++..++. |. +++.+|.++++.+|+++|++++++ +|++|++++++|++|.+.|+++|+++|++||+++|+|+
T Consensus 204 ~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~ 282 (504)
T 2okj_A 204 KAGAALGF-GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA 282 (504)
T ss_dssp HHHHHTTS-CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHcCC-CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh
Confidence 98887732 33 899999988899999999999976 58999999999999999999999999999999999999
Q ss_pred ccccCccc-----cccCcc-cccEEEeccccc-cCCCCceEEEEecC-CCCc----cccccccCCcccc---------cc
Q psy8850 174 AQAVGKID-----INIQNY-KVDLMSFSAHKI-YGPKGIGALYIRRN-PRTR----IEAQIHGGGHEYG---------LR 232 (397)
Q Consensus 174 a~~~~~~~-----~~~~~~-~~d~~~~s~~K~-~g~~g~g~~~~~~~-~~~~----~~~~~~~~~~~~~---------~~ 232 (397)
+|+.+... ..+... ++|++++|+||+ ++|.|+|+++++++ .... ..+++.++..... ..
T Consensus 283 a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 362 (504)
T 2okj_A 283 AWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362 (504)
T ss_dssp TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSC
T ss_pred hhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCC
Confidence 99876643 223322 789999999995 55888999999875 2221 1223322111000 00
Q ss_pred CCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC---------
Q psy8850 233 SGT-LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--------- 302 (397)
Q Consensus 233 ~~~-~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 302 (397)
.+. .+...+++...++. .+++.++.++..++++++.+.|++ ++++.+..+.... ...+.|.+....
T Consensus 363 ~~rr~~~l~~~a~l~~lg--~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~p~-~~~v~f~~~~~~~~~~~~~~~ 438 (504)
T 2okj_A 363 CGRHVDIFKFWLMWKAKG--TVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPE-HTNVCFWYIPQSLRGVPDSPQ 438 (504)
T ss_dssp SSCBCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT-CTTEEESSSSCCS-SSCEEEEECCGGGSSCCCCHH
T ss_pred CCCCccHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCC-eEEEEEEEeCccccccccchh
Confidence 010 11222333323332 457888999999999999999999 8899888631111 344455542110
Q ss_pred --------hHHHHHHhC--Cc-EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHH
Q psy8850 303 --------GESLLMAIK--DI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 303 --------~~~~~~~l~--~i-~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 370 (397)
..++.+.|. |+ .+.++. +. ...+++|+++. ..++++||++++++|++++
T Consensus 439 ~~~~~~~~~~~l~~~L~~~G~~~~~~~~-~~------------------~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 439 RREKLHKVAPKIKALMMESGTTMVGYQP-QG------------------DKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp HHHHHTTHHHHHHHHHHHHTSCEEEEEE-ET------------------TEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcEEEEeeE-EC------------------CceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 234555554 53 222110 00 01268999996 7899999999999999887
Q ss_pred HH
Q psy8850 371 KK 372 (397)
Q Consensus 371 ~~ 372 (397)
++
T Consensus 500 ~~ 501 (504)
T 2okj_A 500 QD 501 (504)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 103
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.98 E-value=1.2e-30 Score=245.58 Aligned_cols=334 Identities=12% Similarity=0.079 Sum_probs=220.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
|+.++++..+.+.+++.. +.++.. .|.+++...+...++++.+++++|.+ +.++++||++|+.+++.++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~-- 101 (398)
T 1gc0_A 32 VYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL-- 101 (398)
T ss_dssp BCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred ccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--
Confidence 567777777777776642 223333 45455555678899999999999987 56667777899999999886
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++|++|+++.++|+++...+..+ ...|.+++.++.+ |++++++++++++++|++++++||||.+.|+++|++
T Consensus 102 --~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~ 174 (398)
T 1gc0_A 102 --RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAK 174 (398)
T ss_dssp --CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred --cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHH
Confidence 78999999999999998887554 3449999999864 899999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCccccccCcccccEEEeccccccC-CCC--ceEEEEecCCCC-ccccccccCCccccccCCCC
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTL 236 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 236 (397)
+|++||+++|+|++|+.+.....+ ..++|+++.|+||.+| +.+ .|+++++++... .+.....+ +..++.
T Consensus 175 l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~------~~~~~~ 247 (398)
T 1gc0_A 175 IARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD------MTGAVL 247 (398)
T ss_dssp HHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH------HTCCCC
T ss_pred HHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc------cCCCCC
Confidence 999999999999999866543222 3478999999999544 543 599988865433 23322211 012345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE--------------EeCCCCCCCCceEEEEecCCC
Q psy8850 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY--------------INGDMNNRIPHNLNISFNFIE 302 (397)
Q Consensus 237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 302 (397)
+....++...+++.+ ..+.++..++.+.+.+.|++ .+.+. +..+.....++++.+.+++.
T Consensus 248 ~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~- 321 (398)
T 1gc0_A 248 SPHDAALLMRGIKTL----NLRMDRHCANAQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG- 321 (398)
T ss_dssp CHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTH-
T ss_pred CHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC-
Confidence 555555444555543 34455666667777777766 54432 22221123467778887642
Q ss_pred hHHHHHHhC--CcEecc---cCc------cCC--CCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 303 GESLLMAIK--DIAVSS---GSA------CTS--ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 303 ~~~~~~~l~--~i~~~~---g~~------~~~--~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
.......+. ++.... |.. |.. ....++..+...|+.. +.||||++..+++++|+.+.++|+++
T Consensus 322 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 322 IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISE----GLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 222333332 444333 432 111 1123445667777664 89999999999999999999998764
No 104
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.98 E-value=2.2e-31 Score=251.70 Aligned_cols=320 Identities=15% Similarity=0.132 Sum_probs=228.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEeCChhHHHHHHHHHhHh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~-~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++|+.+++++.+.+..... . .|.... ...++++.++++++ +++ ++|++++|+++|+.+++.++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~~---~-~y~~~~----g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~- 106 (410)
T 3e2y_A 36 SPPSYVKEELSKAAFIDNM---N-QYTRGF----GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV- 106 (410)
T ss_dssp CCCHHHHHHHHHHHTCGGG---G-SCCCTT----CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhCccc---c-CCCCCC----ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-
Confidence 5789999999998864210 0 111111 23445555555554 555 789999999999999999887
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-----------CCCCCCHHHHHHHhcCCceEEEEecccCcc
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----------NNGLITLSQLEEKICSDTILVSVMLVNNEI 149 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-----------~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t 149 (397)
++|++|++..+.|+++...+... |.+++.++.+ .++.+|++++++++++++++|++++++|||
T Consensus 107 ---~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~npt 180 (410)
T 3e2y_A 107 ---DPGDEVIIMVPFYDCYEPMVRMA---GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPL 180 (410)
T ss_dssp ---CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred ---CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCC
Confidence 78999999999999998877776 9999999876 244689999999999999999999999999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEecccccCc----cccccC----cccccEEEeccccccCCCC--ceEEEEecCCCC
Q psy8850 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRT 216 (397)
Q Consensus 150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~ 216 (397)
|.+++ +++|+++|++||+++|+|++|+... ...++. ..+.++++.|++|.+|+.| +|+++++++...
T Consensus 181 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 181 GKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIK 260 (410)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHH
Confidence 99974 7889999999999999999997422 111221 1245688999999666444 799988876555
Q ss_pred ccccccccCCccccccCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCC
Q psy8850 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 289 (397)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 289 (397)
.+...... ...+.+.....++.++++. ..++++++.++++++++++.+.|++ + ++.+..+..
T Consensus 261 ~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-- 329 (410)
T 3e2y_A 261 HLQTVQQN-------SFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS-V-GLKPIVPDG-- 329 (410)
T ss_dssp HHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCSB--
T ss_pred HHHHHHHh-------hccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc--
Confidence 44332211 1223455555555566653 2335788889999999999999998 5 777665543
Q ss_pred CCceEEEEecCCC------------hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850 290 IPHNLNISFNFIE------------GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 354 (397)
Q Consensus 290 ~~~~~~~~~~~~~------------~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 354 (397)
+.++++.+.... ..++...+ . ||.+.+|..|.... ..+...++|||+++.
T Consensus 330 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~~~~~~~iRis~~~-- 394 (410)
T 3e2y_A 330 -GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK------------SKPHFEKLVRFCFIK-- 394 (410)
T ss_dssp -SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTT------------THHHHTTEEEEECCC--
T ss_pred -cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCC------------CCCCCCCEEEEEEcC--
Confidence 445566664311 12555544 2 99999998775411 011234899999886
Q ss_pred CHHHHHHHHHHHHH
Q psy8850 355 TEKEIDFTIKLLKM 368 (397)
Q Consensus 355 ~~~~i~~~~~~l~~ 368 (397)
+++++++++++|++
T Consensus 395 ~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 395 KDSTLDAAEEIFRA 408 (410)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999875
No 105
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.98 E-value=2.9e-31 Score=245.98 Aligned_cols=321 Identities=14% Similarity=0.180 Sum_probs=224.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
|+++..+++++.+++++.+.... +...+...+...++++++++++| ++.++++++||++|+.+++.++.
T Consensus 12 ~~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~- 80 (356)
T 1v72_A 12 FSSDNIAGASPEVAQALVKHSSG---------QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT- 80 (356)
T ss_dssp CSCGGGCCCCHHHHHHHHHTTSS---------CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC-
T ss_pred eccCCccCCCHHHHHHHHhhccC---------cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc-
Confidence 34555567889999999887532 11112224567889999999999 44459999999999999999876
Q ss_pred hhccCCCEEEEcCCCChhhHHH--HHHHhhCCcEEEEeccCCCCCCCHHHHHH-HhcC-------CceEEEEecccCccc
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEE-KICS-------DTILVSVMLVNNEIG 150 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~--~~~~~~~g~~v~~v~~~~~~~~d~~~l~~-~i~~-------~~~~v~~~~~~~~tG 150 (397)
++|++|+++.++|+++... +..... |.+++.+|.+ ++.+|++++++ ++++ ++++|++++++| ||
T Consensus 81 ---~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG 154 (356)
T 1v72_A 81 ---PPWGNIYCHPASHINNDECGAPEFFSN-GAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VG 154 (356)
T ss_dssp ---CTTEEEEECTTSHHHHSSTTHHHHHTT-SCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS
T ss_pred ---CCCCEEEEcCccchhhhhchHHHHHhC-CcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC
Confidence 7899999999988887654 333211 7788888875 46799999999 8876 689999999876 99
Q ss_pred cccc---HHHHHHHHHhcCcEEEEecccccCc-----cccccC--cccccEEEeccccccCCCCceEEEEecCCCCcccc
Q psy8850 151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQ--NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA 220 (397)
Q Consensus 151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~--~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~ 220 (397)
.++| +++|.++|++||+++|+|++|+.+. ...... ..+.|++++|+||.+++.|+|+++.+++....+..
T Consensus 155 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~~~~ 234 (356)
T 1v72_A 155 SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSY 234 (356)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHHhhHHH
Confidence 9655 7889999999999999999987421 111111 12678999999998556666788877665554432
Q ss_pred ccccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec
Q psy8850 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299 (397)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
.... .+........+..++++.+.+ .+.++.+++.++++++.+.|++ ++++.+..+.. ..++++.++
T Consensus 235 ~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~~~~~ 302 (356)
T 1v72_A 235 RRKR--------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANILFCRLD 302 (356)
T ss_dssp HHHH--------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEEEEEEC
T ss_pred Hhhc--------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCC---ccEEEEEcC
Confidence 2110 011111112222233443332 3456678888999999999988 78888765432 445566654
Q ss_pred CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
.++.+.|. ||.+.+|. +. .+++|++++..++++++++++++|++++++.++
T Consensus 303 ----~~~~~~l~~~gi~v~~g~-~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~~ 355 (356)
T 1v72_A 303 ----SAMIDALLKAGFGFYHDR-WG--------------------PNVVRFVTSFATTAEDVDHLLNQVRLAADRTQE 355 (356)
T ss_dssp ----HHHHHHHHHTTCBCBCSS-SS--------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC-----
T ss_pred ----HHHHHHHHhcCeEEeccc-cC--------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 36666665 88887764 11 278999999888999999999999998876654
No 106
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.98 E-value=3.3e-30 Score=245.59 Aligned_cols=300 Identities=13% Similarity=0.115 Sum_probs=222.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEE
Q psy8850 36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVT 114 (397)
Q Consensus 36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~ 114 (397)
.....+...++++++++++|++++++.+++|+|.+++.++.++.. ++|++|+++.++|+++...+..+.+ .|++++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 445567889999999999999877889999999665655554322 6789999999999999988876433 499999
Q ss_pred EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc-cccCccccccCcccccEEE
Q psy8850 115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA-QAVGKIDINIQNYKVDLMS 193 (397)
Q Consensus 115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a-~~~~~~~~~~~~~~~d~~~ 193 (397)
.++. +++.+|+++ ++++|++|+++++ |++|.+.|+++|+++|+++|+++|+|.. ++.|....+ ..+++|+++
T Consensus 180 ~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~ 252 (438)
T 1wyu_A 180 TLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAV 252 (438)
T ss_dssp EECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEE
T ss_pred EEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEE
Confidence 9997 557788776 6788999999999 9999999999999999999999997754 555543332 345789999
Q ss_pred eccccc------cCCCCceEEEEecCCCCccccccccCC-----------------ccccccCCCCch---hHHHHHHHH
Q psy8850 194 FSAHKI------YGPKGIGALYIRRNPRTRIEAQIHGGG-----------------HEYGLRSGTLAT---HQIVGMGEA 247 (397)
Q Consensus 194 ~s~~K~------~g~~g~g~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~l~~a 247 (397)
+|.+|+ +|| |+|+++++++....+.....|+. ...++..++++. ..++++.++
T Consensus 253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa 331 (438)
T 1wyu_A 253 GDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (438)
T ss_dssp EECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred ECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence 997762 355 78999999876655543322210 001233455655 455555555
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe--cccCc
Q psy8850 248 --FRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV--SSGSA 320 (397)
Q Consensus 248 --l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~--~~g~~ 320 (397)
+..+. ++++++.+++.++++++.+.|++ ++++.+..+. .....+.+.++ .+..++.+.|. ||.+ .++.+
T Consensus 332 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~--~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~ 407 (438)
T 1wyu_A 332 MYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPK--PFFNEFALALP-KDPEAVRRALAERGFHGATPVPRE 407 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCS--SBCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCC--CeEEEEEEeCC-CCHHHHHHHHHHCCceeccccccc
Confidence 55443 46888999999999999999999 8888887642 11233344443 46678887776 7777 44533
Q ss_pred cCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
+. ++++||++..+++.+|+++++++|++++
T Consensus 408 ~~--------------------~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 408 YG--------------------ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SC--------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cC--------------------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 32 3899999999999999999999998763
No 107
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.98 E-value=4.2e-31 Score=246.92 Aligned_cols=315 Identities=12% Similarity=-0.028 Sum_probs=228.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
++|+.+++++.+.+.....++.. ....+...++.+.+.+.+|. ++++|++|+|+++|+.+++.++. ++
T Consensus 36 ~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~----~~ 105 (376)
T 3ezs_A 36 ETPKFIQDALKNHTHSLNIYPKS------AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL----FD 105 (376)
T ss_dssp CCCHHHHHHHHTTGGGGGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT----TT
T ss_pred CCCHHHHHHHHHhhhhcCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc----CC
Confidence 46789999998877443322211 11234455555555555687 67789999999999999999987 78
Q ss_pred --CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850 86 --GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 160 (397)
Q Consensus 86 --g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~ 160 (397)
||+|++..++|+++...+... |.+++.+|.++++.+++ ++++++.+++++|++++++||||.++| +++|++
T Consensus 106 ~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~ 181 (376)
T 3ezs_A 106 YQNPTIAYPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVK 181 (376)
T ss_dssp CSSCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred CCCCEEEEecCCcHhHHHHHHHc---CCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHH
Confidence 899999999999998887766 99999999986644555 777777778999999999999999998 567788
Q ss_pred HHHhcCcEEEEecccccCcc---ccccC---------cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850 161 LCRSKGVIFHCDAAQAVGKI---DINIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~---~~~~~---------~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~ 226 (397)
+|++||+++|+|++|+.... +.... ..+.++++.|++|.+|..| +|+++.+++....+.....
T Consensus 182 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--- 258 (376)
T 3ezs_A 182 LALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRA--- 258 (376)
T ss_dssp HHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHT---
T ss_pred HHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHh---
Confidence 89999999999999985332 11111 3467899999999665444 7998887665555443321
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (397)
....+.+.....++.++++. .+.+++..+++.++++++.+.|+ ++. .+. .+.++++.++ +..++
T Consensus 259 ----~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~--~~~---~~~~~~~~~~--~~~~~ 322 (376)
T 3ezs_A 259 ----YLGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK----NTL--IYP---YSFYVYLPVQ--NGENF 322 (376)
T ss_dssp ----TTCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST----TCC--CCS---BSSEEEEECS--CHHHH
T ss_pred ----hhcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc----CCC--CCC---cceEEEEECC--CHHHH
Confidence 11234566666666666664 33567788888888888888876 222 121 1455666665 56677
Q ss_pred HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.+.|. ||.+.+|..|... ....+++||+++. +++++++++++|++++++
T Consensus 323 ~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 323 AKTLYQNEGIITLPALYLGRN---------------RIGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHCCBCEEGGGGCST---------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEeCcHHhCCC---------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 76663 8999999777631 1224899999985 899999999999998754
No 108
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.98 E-value=2.7e-31 Score=253.15 Aligned_cols=296 Identities=18% Similarity=0.220 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850 42 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 113 (397)
Q Consensus 42 ~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v 113 (397)
...++++.++++++ ++++++++++|+++|+.+++.++. ++||+|+++.+.|+++...+.. ..|.++
T Consensus 87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~~ 160 (435)
T 3piu_A 87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEI 160 (435)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEE
T ss_pred CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHHH--hcCCEE
Confidence 45678888888887 667899999999999999999987 7899999999999999876551 239999
Q ss_pred EEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc--
Q psy8850 114 TYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI-- 180 (397)
Q Consensus 114 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~-- 180 (397)
+.++.++ ++.+|+++|++++++ ++++|++++++||||.++|. ++|+++|++||+++|+|++|+.+..
T Consensus 161 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~ 240 (435)
T 3piu_A 161 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240 (435)
T ss_dssp EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred EEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 9999875 345899999999976 89999999999999999885 7788889999999999999985221
Q ss_pred --ccccCc-------------ccccEEEeccccccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHH
Q psy8850 181 --DINIQN-------------YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIV 242 (397)
Q Consensus 181 --~~~~~~-------------~~~d~~~~s~~K~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (397)
...... .+.++++.|++|.+|..| +|+++++++ ....+..... .+..+.....
T Consensus 241 ~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 311 (435)
T 3piu_A 241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS---------FGLVSSQTQH 311 (435)
T ss_dssp SCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG---------GSCCCHHHHH
T ss_pred CCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh---------cCCCCHHHHH
Confidence 111111 233488999999666444 799988533 2222221110 1123334444
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-------ChHHHHHHh--
Q psy8850 243 GMGEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI-- 310 (397)
Q Consensus 243 ~l~~al~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l-- 310 (397)
++.++++ ++.+.+++..+++.++++++.+.|++ . ++.+..+.. +.++++.++.. +..++...|
T Consensus 312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 386 (435)
T 3piu_A 312 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-S-GISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVY 386 (435)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-TCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCe---eEEEEEEcccccccCCchhHHHHHHHHHH
Confidence 4444444 22345677889999999999999998 4 777665433 35667777642 234666665
Q ss_pred C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 311 K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 311 ~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
+ ||.+.+|..|.+ ..++++||+++.. +++++++++++|+++++++++
T Consensus 387 ~~gi~v~~g~~~~~-----------------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~ 434 (435)
T 3piu_A 387 EVHLNISPGSSCHC-----------------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN 434 (435)
T ss_dssp TSCEECEEGGGGTC-----------------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred HCCEEEeCCcccCC-----------------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 3 899999876654 1248899999765 899999999999999987653
No 109
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.98 E-value=8.6e-31 Score=244.65 Aligned_cols=330 Identities=15% Similarity=0.137 Sum_probs=228.3
Q ss_pred HHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCEEEE
Q psy8850 13 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKHIIT 91 (397)
Q Consensus 13 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~vl~ 91 (397)
+.+++.+.+.... + ...+...++++.++++++.+ ++++++||++|+.+++.++ . ++||+|++
T Consensus 21 ~~~~~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~----~~gd~v~~ 83 (374)
T 3uwc_A 21 YLNDLREFIKTAD-------F----TLGAELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI----GAGDEVIT 83 (374)
T ss_dssp HHHHHHHHHHHTC-------C----SSCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC----CTTCEEEE
T ss_pred HHHHHHHHHHcCC-------c----ccChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCCCEEEE
Confidence 8888887776521 1 11346789999999999987 7899999999999999988 6 78999999
Q ss_pred cCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 92 VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 92 ~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+.++|+++...+... |.+++.++.++++.+|++++++++++++++|+ ++||||.+.|+++|.++|++||+++|+
T Consensus 84 ~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~ 157 (374)
T 3uwc_A 84 CANTFIASVGAIVQA---GATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVE 157 (374)
T ss_dssp ESSSCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred CCCccHHHHHHHHHc---CCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEE
Confidence 999999998887766 99999999988888999999999999998887 788999999999999999999999999
Q ss_pred ecccccCccccccCccc--ccEEEeccc--cccCC-CCceEEEEecC-CCCccccccccCCcccccc--CCCCchhHHHH
Q psy8850 172 DAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGP-KGIGALYIRRN-PRTRIEAQIHGGGHEYGLR--SGTLATHQIVG 243 (397)
Q Consensus 172 D~a~~~~~~~~~~~~~~--~d~~~~s~~--K~~g~-~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 243 (397)
|++|+.+.. ++....+ .|++++|+| |.+++ ...|+++.+++ ....+......+.. ..+. ..+.+. .+..
T Consensus 158 D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 234 (374)
T 3uwc_A 158 DACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLI-NRDVCVEYGINC-RMDT 234 (374)
T ss_dssp ECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE-ETTEESSCCCBC-BCCH
T ss_pred eCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcc-ccCccccccccC-CCCH
Confidence 999997754 3322223 699999977 96555 33577776643 22223322221111 0010 011111 1122
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCc-EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850 244 MGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS 319 (397)
Q Consensus 244 l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~ 319 (397)
+.+++... .++++++.++..++.+++.+.|.+ +++ +.+...+......+..+.+...+..++.+.|. ||.+.++.
T Consensus 235 ~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~ 313 (374)
T 3uwc_A 235 IQAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHY 313 (374)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCC
Confidence 22333322 235677888889999999999998 777 77654333221222223333235677888776 88888774
Q ss_pred ccCCCCCChhhHHHhhCCCc-------cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 320 ACTSASLEPSYVLRALGCND-------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~-------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.... .. ...+..++... ....+.+|++++..+|++||++++++|++++++
T Consensus 314 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 314 PIAM-HL--QPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp SSCG-GG--SGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCcc-cc--ChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 1110 00 01122222211 122378999999999999999999999998864
No 110
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.98 E-value=6.4e-30 Score=241.67 Aligned_cols=318 Identities=13% Similarity=0.133 Sum_probs=235.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
+.++.+++++.+.+..+. .... .+...+...+...+++++++++++.+ ..+++++|++|+..++.++. ++||
T Consensus 73 ~~~p~v~~a~~~~l~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~l~~~~----~~gd 144 (409)
T 3kki_A 73 ANHPLIKARLAKSLLEEQ-QSLF-MSASFLQNDYDKPMIEKRLAKFTGFD--ECLLSQSGWNANVGLLQTIC----QPNT 144 (409)
T ss_dssp TTCHHHHHHHHHHHHSCC-CCCC-SBGGGGCSTTTSCHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTC
T ss_pred cCCHHHHHHHHHHHHHcC-CCCC-ccccccCCcHHHHHHHHHHHHHhCCC--eEEEecchHHHHHHHHHHhc----CCCC
Confidence 357999999999987632 1111 22222222345678999999999987 35666777899999999887 8999
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g 166 (397)
+|+++.++|+++...+... |.+++.++. +|+++|++++++ ++++|++++++||||.+.|+++|+++|++||
T Consensus 145 ~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~ 216 (409)
T 3kki_A 145 NVYIDFFAHMSLWEGARYA---NAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFG 216 (409)
T ss_dssp EEEEETTSCHHHHHHHHHT---TCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHT
T ss_pred EEEECCCcCHHHHHHHHHc---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcC
Confidence 9999999999999888776 889888775 489999999986 5899999999999999999999999999999
Q ss_pred cEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850 167 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (397)
Q Consensus 167 i~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
++||+|++|+.+... .+. ..++|+++.|++|.+++.| |+++.+++....+...... ..+ .+..+
T Consensus 217 ~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~~~~----~~~-~~~~~ 289 (409)
T 3kki_A 217 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFISYP----AIF-SSTLL 289 (409)
T ss_dssp CEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHHCHH----HHH-SBCCC
T ss_pred CEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHhCcC----ccc-cCCCc
Confidence 999999999864331 111 1257899999999666654 9999987766555432111 011 12345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcE
Q psy8850 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIA 314 (397)
Q Consensus 238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~ 314 (397)
...++++.++++...+. +++.+++.++++++.+.|++ + ++.+.+ ...++++.++.. +..++.+.|. ||.
T Consensus 290 ~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~Gv~ 361 (409)
T 3kki_A 290 PYEAAGLETTLEIIESA-DNRRQHLDRMARKLRIGLSQ-L-GLTIRS-----ESQIIGLETGDERNTEKVRDYLESNGVF 361 (409)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHT-T-TCCCCC-----SSSEEEEEEESHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCccCC-----CCCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence 56666777788876543 67888999999999999998 4 554432 255667777642 2455666665 888
Q ss_pred ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.+...+.. ..+.+++||+++..++++++++++++|++++++
T Consensus 362 v~~~~~~~~----------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 362 GSVFCRPAT----------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp CEEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeeCCCCc----------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 776432111 123489999999889999999999999998865
No 111
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.98 E-value=2e-30 Score=248.19 Aligned_cols=323 Identities=16% Similarity=0.107 Sum_probs=230.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFYK 83 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~i~~~~g~t~a~~~~l~~l~~~~~ 83 (397)
++++.|++++.+.+......+. .+. |.......++++.+++++ ++++++|++++|+++++.++ .++.
T Consensus 82 ~~~~~v~~a~~~~~~~~~~~~~--~~~--y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~---- 152 (449)
T 3qgu_A 82 PLPKYIADAMAKAAAGLATREG--YSG--YGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMF---- 152 (449)
T ss_dssp CCCHHHHHHHHHHHHGGGGSCC--CCC--STTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH----
T ss_pred CCCHHHHHHHHHHHHhhccccC--CCC--CCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHh----
Confidence 5789999999999876332111 111 122234678899999998 77778999999999999988 7776
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhhCCcE----------EEEeccCCCC--CCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLENDGFR----------VTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGV 151 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~----------v~~v~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~~~~tG~ 151 (397)
++||+|+++.++|+++...+... |.+ ++.+|.++++ ..|++++ +++++|++++++||||.
T Consensus 153 ~~gd~Vl~~~p~~~~~~~~~~~~---g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~ 224 (449)
T 3qgu_A 153 GSKPTVAVQDPSYPVYVDTSVMM---GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGA 224 (449)
T ss_dssp CSSSCEEEEESCCTHHHHHHHHH---TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCC
T ss_pred CCCCEEEEcCCCChhHHHHHHHc---CCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCC
Confidence 78999999999999999888887 777 8889987543 3333321 57899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCc-
Q psy8850 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR- 217 (397)
Q Consensus 152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~- 217 (397)
++| +++|+++|++||+++|+|++|+... .+..+.. .+.++++.|++|.+|..| +|+++++++....
T Consensus 225 ~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~ 304 (449)
T 3qgu_A 225 AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYAN 304 (449)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTT
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhh
Confidence 998 6788888999999999999998522 1222222 256799999999665334 7999998776552
Q ss_pred cccccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE
Q psy8850 218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296 (397)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 296 (397)
................++.+.....+..++++. ..+.++++.+++.++++++.+.|++ + ++.+..+.. +.++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~ 379 (449)
T 3qgu_A 305 GEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSVYGGDD---APYIWV 379 (449)
T ss_dssp SCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEESSS---SSEEEE
T ss_pred hhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---eeEEEE
Confidence 000000000001112224455555555566654 3346788899999999999999998 4 666665433 456677
Q ss_pred EecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 297 SFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 297 ~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
.+++.+..++.+.|. ||.+.+|..|.+ .+.++|||++.. +++++++++++|+++++
T Consensus 380 ~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-----------------~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 380 GFPGKPSWDVFAEILERCNIVTTPGSGYGP-----------------AGEGFVRASAFG--SRENILEAVRRFKEAYG 438 (449)
T ss_dssp ECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHC
T ss_pred ECCCCCHHHHHHHHHHHCCEEEecchHhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 777566777776664 899999876654 124899999754 89999999999988763
No 112
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.97 E-value=1.6e-29 Score=242.56 Aligned_cols=313 Identities=14% Similarity=0.113 Sum_probs=229.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCC---------cEEEeCChhHHHHHHHHHhHhhhc---------------cCCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPR---------EIIWTSGATESNNLAIKGAAHFYK---------------KRGK 87 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~---------~i~~~~g~t~a~~~~l~~l~~~~~---------------~~g~ 87 (397)
.+..++...+...++.+++++++|.+.+ .+++|+|||+|+..++.+...... .+++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 3445566677888899999999999753 589999999999988887653221 1346
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHHH
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGEL 161 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~l 161 (397)
+|+++..+|.++..++... |.+++.+|+++++ +|+++|+++|+++ +.+|++++++|++|.+.|+++|+++
T Consensus 184 ~vi~s~~~H~s~~~~~~~~---g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~l 259 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLG---GVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPV 259 (475)
T ss_dssp EEEEETTSCHHHHHHHHHH---TCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHc---CCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHH
Confidence 8999999999999998877 9999999999889 9999999999764 6788999999999999999999999
Q ss_pred HHhcCcEEEEecccccCcccc-cc----Ccc-cccEEEecccc-ccCCCCceEEEEecCCC-Cc-c---ccccccCCc--
Q psy8850 162 CRSKGVIFHCDAAQAVGKIDI-NI----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR-TR-I---EAQIHGGGH-- 227 (397)
Q Consensus 162 ~~~~gi~livD~a~~~~~~~~-~~----~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~-~---~~~~~~~~~-- 227 (397)
|++||+++|+|++|+.+.... .. ..+ .+|++++|+|| +++|.|+|+++++++.. .. + ..++.....
T Consensus 260 a~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 339 (475)
T 3k40_A 260 GNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS 339 (475)
T ss_dssp HHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------------
T ss_pred HHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCC
Confidence 999999999999998764321 11 111 46999999999 77888999999986532 11 1 111111000
Q ss_pred -----cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850 228 -----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (397)
Q Consensus 228 -----~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (397)
...... +.+ ...+++.+++..+ .++++++.++..++++++.+.|++ ++++.+..++. .+++.|.+++.
T Consensus 340 ~~~~~~~~~~~-sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~l~~~~~---~~iv~f~~~~~ 413 (475)
T 3k40_A 340 APDYRHWQIPL-GRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA-DSRFELAAEIN---MGLVCFRLKGS 413 (475)
T ss_dssp ---------CC-CGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEESSCCB---TTEEEEEESSC
T ss_pred CCCcccccccC-CCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCc---eEEEEEEeCCc
Confidence 001111 111 2455666677655 457899999999999999999999 89999887643 46677777542
Q ss_pred C--hHHHHHHhC--Cc-EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy8850 302 E--GESLLMAIK--DI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 302 ~--~~~~~~~l~--~i-~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~ 374 (397)
+ ..++.+.|. |. .+.++. ..+..++|+++... ++++||++++++|+++.+++.
T Consensus 414 ~~~~~~l~~~L~~~g~~~~~~~~--------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 414 NERNEALLKRINGRGHIHLVPAK--------------------IKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHHHHHHTSCBCEEEE--------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCcEEEEeeE--------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 2 356666665 33 333221 11237899998744 689999999999999988764
No 113
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.97 E-value=6.4e-30 Score=242.81 Aligned_cols=299 Identities=13% Similarity=0.078 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHhCCCC---------CcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCc
Q psy8850 41 KAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF 111 (397)
Q Consensus 41 ~~~~~~~~~la~~~~~~~---------~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~ 111 (397)
+..+.+.+.+++.+|.+. ++|++|+|+++|+.+++.++. ++||+|++..|+|+++...+... |.
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~ 154 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQSLHPL---GC 154 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHGGG---TC
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CC
Confidence 445556666666678753 589999999999999999987 78999999999999988776655 99
Q ss_pred EEEEeccCCCCCCCHHHHHHHhc------------CCceEEEE-ecccCcccccccHH---HHHHHHHhcCcEEEEeccc
Q psy8850 112 RVTYLKPKNNGLITLSQLEEKIC------------SDTILVSV-MLVNNEIGVIQPIL---EIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 112 ~v~~v~~~~~~~~d~~~l~~~i~------------~~~~~v~~-~~~~~~tG~~~~l~---~i~~l~~~~gi~livD~a~ 175 (397)
+++.+|.++++ +|+++|+++++ +++++|++ ++++||||.++|.+ +|+++|++||++||+|++|
T Consensus 155 ~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~ 233 (425)
T 2r2n_A 155 NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY 233 (425)
T ss_dssp EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 99999987655 89999999987 35788866 78999999999865 8999999999999999999
Q ss_pred cc----CccccccCc---ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850 176 AV----GKIDINIQN---YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE 246 (397)
Q Consensus 176 ~~----~~~~~~~~~---~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (397)
+. +....++.. .+.++++.|++|.++ +| +|+++++++....+...... ...+.+.....++.+
T Consensus 234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~-------~~~~~~~~~q~a~~~ 305 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV-------STLHPSTFNQLMISQ 305 (425)
T ss_dssp GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT-------TTCSSCHHHHHHHHH
T ss_pred ccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH-------hcCCCCHHHHHHHHH
Confidence 73 221222222 245688999999666 45 79999997655554433211 123455566666667
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecC-CChHH-HHHHhC--CcEec
Q psy8850 247 AFRLA-----RIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IEGES-LLMAIK--DIAVS 316 (397)
Q Consensus 247 al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~--~i~~~ 316 (397)
+++.+ .+++++..++++++++++.+.|++.++++ .+..+.. +.++++.++. .+..+ +...+. ||.+.
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 382 (425)
T 2r2n_A 306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAA---GMFLWIKVKGINDVKELIEEKAVKMGVLML 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSB---SSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCc---eEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence 77653 24577788899999999999998855675 3443322 4567777764 34445 355554 99999
Q ss_pred ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+|..|... .....+++||+++. .+++++++++++|++++++.
T Consensus 383 pg~~f~~~--------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 383 PGNAFYVD--------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EGGGGSSS--------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCC--------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 99766541 01123789999984 58999999999999988653
No 114
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.97 E-value=1.8e-30 Score=244.27 Aligned_cols=308 Identities=13% Similarity=0.091 Sum_probs=220.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (397)
Q Consensus 33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~ 111 (397)
|.+++...+...++++.+++++|.+ +.++++||++|+++++.++. ++||+|+++.+.|+++...+.. +...|+
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~ 147 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV 147 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 4445555667889999999999986 56677899999999999887 7999999999999999887754 344599
Q ss_pred EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh--cCcEEEEecccccCccccccCcccc
Q psy8850 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKV 189 (397)
Q Consensus 112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~ 189 (397)
+++.++.+ |+++++++++++|++|++++++||+|.+.|+++|+++|++ +|+++|+|++|+.+.....+ .+++
T Consensus 148 ~v~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~ 221 (415)
T 2fq6_A 148 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGI 221 (415)
T ss_dssp EEEEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTC
T ss_pred EEEEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCC
Confidence 99999865 8999999999999999999999999999999999999999 99999999999855322112 3579
Q ss_pred cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
|++++|+||++|+.| .|+++.+++..+.+...... ..+..+....+.+..+++ .+..+.++..+++
T Consensus 222 Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~-------~G~~~~~~~a~~~~~~l~----~l~~r~~~~~~n~ 290 (415)
T 2fq6_A 222 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL-------MGQMVDADTAYITSRGLR----TLGVRLRQHHESS 290 (415)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH-------TTCCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred eEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhh----HHHHHHHHHHHHH
Confidence 999999999666555 69998887654443322110 011222222222223333 3345566677788
Q ss_pred HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC----ChHHHHHHhC--CcEecccCccCCCCC
Q psy8850 267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI----EGESLLMAIK--DIAVSSGSACTSASL 326 (397)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~l~--~i~~~~g~~~~~~~~ 326 (397)
..+.+.|++ .+.+..+..+. ...++++.|.+++. +...+...++ ++.++.|+.|+....
T Consensus 291 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~ 369 (415)
T 2fq6_A 291 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA 369 (415)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEE
T ss_pred HHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEe
Confidence 888888888 66554321111 12467889998762 2345555554 577788877765321
Q ss_pred -Ch---hhHH--HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850 327 -EP---SYVL--RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 327 -~~---~~~~--~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (397)
.| +..+ +.+|+. ++.||+|++..+++++|+.+.++|++
T Consensus 370 ~~p~~~s~~~~~~~~g~~----~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 370 NQPEHIAAIRPQGEIDFS----GTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECHHHHHTTCTTCCCCCC----SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cCCCccccccchhhcCCC----CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 01 1111 123433 48999999999999999999998874
No 115
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.97 E-value=8.5e-31 Score=244.62 Aligned_cols=332 Identities=15% Similarity=0.121 Sum_probs=227.4
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCE
Q psy8850 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKH 88 (397)
Q Consensus 10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~ 88 (397)
++++++++.+.+.... + ...+...++++.++++++.+ ++++++|||+|+.+++.++ . ++||+
T Consensus 16 ~~~~~~a~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~----~~gd~ 78 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW-------F----ILGDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI----GFGDE 78 (373)
T ss_dssp HHHHHHHHHHHHHHTC-------C----SSSHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC----CTTCE
T ss_pred CHHHHHHHHHHHHCCC-------c----cCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC----CCcCE
Confidence 4667777777765521 1 12346889999999999986 7999999999999999988 5 78999
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi 167 (397)
|+++.++|+++...+... |.+++.++.+ +++.+|++++++++++++++|+ ++||+|.+.|+++|.++|++||+
T Consensus 79 Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~ 152 (373)
T 3frk_A 79 VIVPSNTFIATALAVSYT---GAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNL 152 (373)
T ss_dssp EEEETTSCTHHHHHHHHH---SCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTC
T ss_pred EEECCCCcHHHHHHHHHc---CCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCC
Confidence 999999999999888777 9999999998 5788999999999999999888 56789999999999999999999
Q ss_pred EEEEecccccCccccccCccc--ccEEEeccc--cccCC-CCceEEEEecC-CCCccccccccCCccc--cccCCCCchh
Q psy8850 168 IFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGP-KGIGALYIRRN-PRTRIEAQIHGGGHEY--GLRSGTLATH 239 (397)
Q Consensus 168 ~livD~a~~~~~~~~~~~~~~--~d~~~~s~~--K~~g~-~g~g~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~ 239 (397)
++|+|++|+.|.. ++...++ .|++++|++ |.+|+ ...|+++.+++ ....+.....++.... ....+. + .
T Consensus 153 ~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~-~ 229 (373)
T 3frk_A 153 KLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGF-N-S 229 (373)
T ss_dssp EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCC-B-C
T ss_pred EEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccc-c-C
Confidence 9999999998765 4444444 789999965 95555 33577777643 3333333332221100 011111 1 0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850 240 QIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS 316 (397)
Q Consensus 240 ~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~ 316 (397)
.+..+.+++... .++++++.++.+++.+++.+.|++ ++ +.+...+......+..+.+...+..++.+.|. ||.+.
T Consensus 230 ~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 307 (373)
T 3frk_A 230 RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTL 307 (373)
T ss_dssp CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCB
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcc
Confidence 112222333322 235677888889999999999988 66 65543322211222222333235778888886 88887
Q ss_pred ccCccCCCCCChhhHHHhhCCCc-------cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 317 SGSACTSASLEPSYVLRALGCND-------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~-------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
++... +. .....+..++... ....+.||+++...+|++|||+++++|+++..+
T Consensus 308 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 308 IHYPI-PI--HLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp CSCSS-CG--GGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred cCcCC-cc--ccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 65311 10 0011223333221 122378999999999999999999999876543
No 116
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=2.3e-31 Score=251.19 Aligned_cols=340 Identities=17% Similarity=0.165 Sum_probs=241.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~ 79 (397)
|+++..+.|+.+++++.+.+...+ +++.+..+.......+....+++++++++|.+++ .+++++|++|+.+++.++.
T Consensus 28 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~~~ 106 (405)
T 2vi8_A 28 LIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFTVL 106 (405)
T ss_dssp CCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHC
T ss_pred eccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHHhc
Confidence 566777889999999998885322 2333211211223334455588999999999854 3444555999999999886
Q ss_pred hhhccCCCEEEEcCCCChhhHHHH---HHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCccccccc
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSI---RKLENDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~---~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~ 154 (397)
++||+|+++.++|+++.... ...+ .+.++..++.+ .++.+|++++++++++ ++++|+++ +++ .|...+
T Consensus 107 ----~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~~~~ 179 (405)
T 2vi8_A 107 ----EHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPRIID 179 (405)
T ss_dssp ----CTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCSCCC
T ss_pred ----CCCCEEEEecccccchhcccchhhhcc-ceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCccCC
Confidence 78999999999998875321 1221 13478888876 5678999999999986 88888874 333 367778
Q ss_pred HHHHHHHHHhcCcEEEEecccccCccccccCcc---cccEEEeccccc-cCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYG 230 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~---~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 230 (397)
+++|.++|++||+++|+|++|+.+....+.... .+|++++|+||. .|+.| |+++++++..+.+......
T Consensus 180 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~------ 252 (405)
T 2vi8_A 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFP------ 252 (405)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcc------
Confidence 999999999999999999999855432222111 578999999995 45877 9999986655444433211
Q ss_pred ccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHH
Q psy8850 231 LRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLL 307 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 307 (397)
+..++++..+++++.++++... .+++++.+++.++++++.+.|++ + ++.+..+.. .+.++++.++. .+..++.
T Consensus 253 ~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 328 (405)
T 2vi8_A 253 GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGT--DNHLLLVDLRPQQLTGKTAE 328 (405)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCC--CceEEEEEccCCCCCHHHHH
Confidence 2345667778888878888765 47888999999999999999999 5 777765422 25567777763 3567777
Q ss_pred HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+.|. ||.+.+|..+.. .......+++|++++. .++++++++++++|+++++++
T Consensus 329 ~~l~~~gi~v~~g~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 329 KVLDEVGITVNKNTIPYD-------------PESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHcCceeccCcCccc-------------cCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 7776 999988753210 0001123679999985 468999999999999987654
No 117
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.97 E-value=3e-29 Score=237.03 Aligned_cols=310 Identities=12% Similarity=0.098 Sum_probs=219.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV 113 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v 113 (397)
++....+...++++.++++++.+ ++++++||++|+.+++.++. ++||+|+++.++|+++...+.. +...|.++
T Consensus 50 y~~~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~ 123 (412)
T 2cb1_A 50 YARQKDPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTV 123 (412)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEE
T ss_pred cCCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEE
Confidence 33334467899999999999986 79999999999999999886 7899999999999998887765 34459999
Q ss_pred EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (397)
Q Consensus 114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~ 193 (397)
+.++.+ ++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+.........+.|+++
T Consensus 124 ~~~~~~------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~ 197 (412)
T 2cb1_A 124 RYVDPE------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVV 197 (412)
T ss_dssp EEECSS------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEE
T ss_pred EEECCC------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEE
Confidence 999864 89999999999999999999999999999999999999999999999999977322222345799999
Q ss_pred ecccc-ccCCCC-ceEEEEecCCCC-----ccc-cccccC---------Ccccc------ccCC-CCchhHHHHHHHHHH
Q psy8850 194 FSAHK-IYGPKG-IGALYIRRNPRT-----RIE-AQIHGG---------GHEYG------LRSG-TLATHQIVGMGEAFR 249 (397)
Q Consensus 194 ~s~~K-~~g~~g-~g~~~~~~~~~~-----~~~-~~~~~~---------~~~~~------~~~~-~~~~~~~~~l~~al~ 249 (397)
+|+|| +.++.+ +|++++.++... .+. +...++ ..... ...| ..+....+.....++
T Consensus 198 ~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~ 277 (412)
T 2cb1_A 198 ESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE 277 (412)
T ss_dssp EETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG
T ss_pred ECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc
Confidence 99999 445544 677777653211 010 000000 00000 0011 111122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850 250 LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DI 313 (397)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i 313 (397)
.+..+.++..++.+++.+.|.+ .+++.++..+. ...++++.|.+ + +...+...+. ++
T Consensus 278 ----~l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i 350 (412)
T 2cb1_A 278 ----TVALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRL 350 (412)
T ss_dssp ----GHHHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSS
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCe
Confidence 2345566677889999999988 77876442111 13467888888 5 6666666664 88
Q ss_pred EecccC---------ccCCCCC--ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850 314 AVSSGS---------ACTSASL--EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 314 ~~~~g~---------~~~~~~~--~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (397)
.+ .++ .|..... -++..+..+|+.. +.||+|++.++++++|+.++++|++
T Consensus 351 ~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 351 LK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP----GLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp EE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ee-ecccCCCcceeecCcccccccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHhh
Confidence 88 763 4433221 2345667777763 8999999999999999999999864
No 118
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=237.68 Aligned_cols=314 Identities=14% Similarity=0.108 Sum_probs=230.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCC----------cEEEeCChhHHHHHHHHHhHhhhc---------------cCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPR----------EIIWTSGATESNNLAIKGAAHFYK---------------KRG 86 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~i~~~~g~t~a~~~~l~~l~~~~~---------------~~g 86 (397)
.+..++...+...++.+++++++|.+.+ ..++|+|||+|+..++.+...... .++
T Consensus 109 ~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~ 188 (481)
T 4e1o_A 109 TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188 (481)
T ss_dssp STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTT
T ss_pred CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCC
Confidence 3445566678888899999999998753 579999999999999887654211 256
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++|+++..+|.++..++... |.+++.+|.++++.+|+++|+++|+++ +.+|++++++|++|.+.|+++|++
T Consensus 189 ~~v~~s~~~H~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 189 LVAYASDQAHSSVEKAGLIS---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp EEEEEETTSCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred eEEEEcCcchHHHHHHHHhC---CCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 79999999999999998766 899999999989999999999999764 778999999999999999999999
Q ss_pred HHHhcCcEEEEecccccCcccc-cc----Ccc-cccEEEecccc-ccCCCCceEEEEecCCC--Ccc---ccccccCCc-
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDI-NI----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR--TRI---EAQIHGGGH- 227 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~-~~----~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~--~~~---~~~~~~~~~- 227 (397)
+|++||+++|+|++|+.+.... .. ..+ .+|++++++|| +++|.|+|+++++++.. ..+ ..++.....
T Consensus 266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 345 (481)
T 4e1o_A 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSG 345 (481)
T ss_dssp HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTT
T ss_pred HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccC
Confidence 9999999999999998764311 11 111 35999999999 77788999999986421 111 111111100
Q ss_pred ------cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850 228 ------EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (397)
Q Consensus 228 ------~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
...... +.. ...+++.+++..+ .++++++.++..++++++.+.|++ ++++.+..++. ..++.|.+++
T Consensus 346 ~~~~~~~~~~~~-~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~~~~---~~~v~f~~~~ 419 (481)
T 4e1o_A 346 VATDFMHWQIPL-SRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN-DPSFEIPAKRH---LGLVVFRLKG 419 (481)
T ss_dssp TSCCGGGGSSSS-CCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEECCSCCC---SSEEEEEESS
T ss_pred CCCCcccccccC-CCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEeCC
Confidence 001111 111 2345555666654 457899999999999999999999 88998876543 4566777754
Q ss_pred CC--hHHHHHHhC--C-cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy8850 301 IE--GESLLMAIK--D-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 301 ~~--~~~~~~~l~--~-i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~ 374 (397)
.+ ..++.+.|. | +.+.++. ..+..++|+++... ++++||++++++|+++.+++.
T Consensus 420 ~~~~~~~l~~~L~~~g~~~~~~~~--------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 420 PNSLTENVLKEIAKAGRLFLIPAT--------------------IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp CHHHHHHHHHHHHHHCSSBCEEEE--------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeeE--------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 22 345666664 4 3333221 11236899998754 589999999999999987754
No 119
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.97 E-value=4.7e-30 Score=242.96 Aligned_cols=309 Identities=16% Similarity=0.123 Sum_probs=228.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g 110 (397)
.|.+++...+...++++.+++++|.+ ..+++++|++|+.+++.++. ++||+|+++.+.|+++...+.. +...|
T Consensus 105 ~~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 178 (445)
T 1qgn_A 105 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG 178 (445)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 45555555678899999999999986 44555666699999999887 7899999999999998876653 34459
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCc-eEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDT-ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV 189 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~-~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~ 189 (397)
.+++.++.+ |++++++++++++ ++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+... ....+++
T Consensus 179 ~~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~ 252 (445)
T 1qgn_A 179 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA 252 (445)
T ss_dssp CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred CEEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCC
Confidence 999999875 8999999999999 99999999999999999999999999999999999999866533 2234589
Q ss_pred cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
|+++.|+||++|+.| +|+++++++....+...... ..+.++....+.+..+++. +..+.++..+++
T Consensus 253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~-------~g~~~~~~~a~~~~~~l~~----l~~r~~~~~~~a 321 (445)
T 1qgn_A 253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI-------LGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA 321 (445)
T ss_dssp SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHH
T ss_pred EEEEECCcccccccccceEEEEEECHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhHHH----HHHHHHHHHHHH
Confidence 999999999777666 89999987654444322110 1122333333333334443 334456667778
Q ss_pred HHHHHHHhhhcCcE-EEeCCCC-------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCCCC---
Q psy8850 267 KRLYNGLMESIEEI-YINGDMN-------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSAS--- 325 (397)
Q Consensus 267 ~~l~~~l~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~--- 325 (397)
+++.+.|++ .+++ .+..+.. ...++++.|.+++. +...+...++ ++.++.|..|+...
T Consensus 322 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~ 400 (445)
T 1qgn_A 322 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA 400 (445)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred HHHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeeccc
Confidence 889999988 7777 4443310 12467888988753 2456777776 78888888876421
Q ss_pred -----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 326 -----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 326 -----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
..++..+..+|+.+ +.||||++. ||+|.+++.|+++++.
T Consensus 401 ~~~h~~~~~~~~~~~g~~~----~~iRlSvG~----Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 401 IMSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQALDS 444 (445)
T ss_dssp HHHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence 11334566777764 899999983 6899999999998864
No 120
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.97 E-value=1.4e-29 Score=244.91 Aligned_cols=330 Identities=15% Similarity=0.086 Sum_probs=227.2
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
.|+.++++..+.+....+.... .|.......+....+.+.+.+..| +++++|++|+|+++|+.+++.++.. ++|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~g 182 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATG-AYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR---NEK 182 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSS-SCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC---STT
T ss_pred CCHHHHHHHHHHHHcCCCCcCC-CcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC---CCC
Confidence 4666777777776653211111 233322223334444444444445 5677899999999999999998752 478
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcC------CceEEEEecccCccccccc---H
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---I 155 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l 155 (397)
|+|+++.|+|+++...+... |.+++.++++++ +.+|+++|++++++ ++++|++++++||||.+++ +
T Consensus 183 d~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l 259 (500)
T 3tcm_A 183 DGILVPIPQYPLYSASIALH---GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQ 259 (500)
T ss_dssp EEEEEEESCCTHHHHHHHHT---TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHH
T ss_pred CEEEEeCCCcHhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHH
Confidence 99999999999999888877 999999998754 47999999999986 7899999999999999988 4
Q ss_pred HHHHHHHHhcCcEEEEecccccCcc-----ccccC----cc-----c-ccEEEecccccc-CCCC--ceEEEE---ecCC
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKI-----DINIQ----NY-----K-VDLMSFSAHKIY-GPKG--IGALYI---RRNP 214 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~----~~-----~-~d~~~~s~~K~~-g~~g--~g~~~~---~~~~ 214 (397)
++|+++|++||+++|+|++|+.... ..++. .+ + ..+++.|+||.+ |..| +|++++ +++.
T Consensus 260 ~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 339 (500)
T 3tcm_A 260 YDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPV 339 (500)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTH
T ss_pred HHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHH
Confidence 5677779999999999999984322 11111 01 1 236678999944 5444 688888 5444
Q ss_pred CCccccccccCCccccccCCCCchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850 215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284 (397)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 284 (397)
.+.+..... ...+++.....++..+++ .+.+....+.+++.++++++.+.|++ ++++.+..
T Consensus 340 ~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~ 410 (500)
T 3tcm_A 340 REQIYKIAS--------VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEGITCNE 410 (500)
T ss_dssp HHHHHHHHH--------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEECCC
T ss_pred HHHHHHHHh--------cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEec
Confidence 444332211 123456666666656664 24456778889999999999999999 78988775
Q ss_pred CCCCCCCceEE--EEecC----------CChH-HHH-HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850 285 DMNNRIPHNLN--ISFNF----------IEGE-SLL-MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348 (397)
Q Consensus 285 ~~~~~~~~~~~--~~~~~----------~~~~-~~~-~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (397)
+.+ +.+++ +.++. .... .+. ..|. ||.+.+|..|... .+..+||+
T Consensus 411 ~~g---~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~g~~~iRi 471 (500)
T 3tcm_A 411 AEG---AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV----------------PGTWHFRC 471 (500)
T ss_dssp CCB---TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------TTCCBEEE
T ss_pred CCe---EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCCEEEE
Confidence 543 22323 22221 1112 222 3343 9999999877630 12368999
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 349 TIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 349 ~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
++. ++++++++++++|.++++++.+
T Consensus 472 s~~--~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 472 TIL--PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp ESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred EEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 999 6899999999999999988765
No 121
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.97 E-value=3.8e-30 Score=241.50 Aligned_cols=330 Identities=13% Similarity=0.091 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCEE
Q psy8850 11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKHI 89 (397)
Q Consensus 11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~v 89 (397)
+++++++.+.+.... + ++...+...++++.++++++.+ +.|+++ +||+|+++++.++ . ++|++|
T Consensus 17 ~~~~~a~~~~l~~~~-------~--~~~~~~~~~~l~~~la~~~~~~-~~i~~~-sGt~al~~~l~~l~~----~~gd~V 81 (388)
T 1b9h_A 17 DAERNGLVRALEQGQ-------W--WRMGGDEVNSFEREFAAHHGAA-HALAVT-NGTHALELALQVMGV----GPGTEV 81 (388)
T ss_dssp HHHHHHHHHHHHTSC-------C--BTTTCSHHHHHHHHHHHHTTCS-EEEEES-CHHHHHHHHHHHTTC----CTTCEE
T ss_pred HHHHHHHHHHHHcCC-------e--eecCCHHHHHHHHHHHHHhCCC-eEEEeC-CHHHHHHHHHHHcCC----CCcCEE
Confidence 899999999887510 1 1122346788999999999987 445555 5599999999988 5 789999
Q ss_pred EEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850 90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 168 (397)
Q Consensus 90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~ 168 (397)
+++.++|+++...+... |.+++.++.++ ++.+|+++|++++++++++|+ ++||||.+.|+++|.++|++||++
T Consensus 82 i~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVP 155 (388)
T ss_dssp EEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred EECCCccHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCE
Confidence 99999999998887666 99999999985 478999999999998888887 789999999999999999999999
Q ss_pred EEEecccccCccc--cccCcccccEEEec--ccc-ccCCCCceEEEEecCCC---CccccccccCCc--ccc---ccCCC
Q psy8850 169 FHCDAAQAVGKID--INIQNYKVDLMSFS--AHK-IYGPKGIGALYIRRNPR---TRIEAQIHGGGH--EYG---LRSGT 235 (397)
Q Consensus 169 livD~a~~~~~~~--~~~~~~~~d~~~~s--~~K-~~g~~g~g~~~~~~~~~---~~~~~~~~~~~~--~~~---~~~~~ 235 (397)
||+|++|+.|... .++..++ |+.++| .+| +.|+ .+|+++.+++.. ..+......+.. ... ...|+
T Consensus 156 li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 233 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS 233 (388)
T ss_dssp BCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC
T ss_pred EEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccc
Confidence 9999999976543 2333333 455555 557 4454 468888886533 222211111100 000 11222
Q ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---CCCCceEEEEecCC---ChHHH
Q psy8850 236 ---LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFNFI---EGESL 306 (397)
Q Consensus 236 ---~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~ 306 (397)
++....+++...+ +.+++..++++++++++.+.|++ ++++.+..+.. ...++++++.+++. +..++
T Consensus 234 ~~~~~~~~~a~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (388)
T 1b9h_A 234 NMRLNEFSASVLRAQL----ARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL 308 (388)
T ss_dssp BCBCBHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred cCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEeCCcCcccHHHH
Confidence 3333333332322 24556778888899999999998 88887765322 12256778888754 45667
Q ss_pred HHHhC--CcEecccCccCCCCCChhhHHHhhCC--------------CccccCceEEEeeCCCC-CHHHHHHHHHHHHHH
Q psy8850 307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGC--------------NDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMK 369 (397)
Q Consensus 307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~iRi~~~~~~-~~~~i~~~~~~l~~~ 369 (397)
.+.|. ||.+..+.. +.... ..+...|. ......+.|||+++..+ |++||+++++.|+++
T Consensus 309 ~~~L~~~gI~v~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 309 VDRLVEAGLPAFAAFR--AIYRT--DAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHHHTTCCEEECCC--CGGGS--HHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcccccC--ccccC--hHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 77775 888877642 21000 11111221 11223468999999989 999999999999998
Q ss_pred HHH
Q psy8850 370 VKK 372 (397)
Q Consensus 370 ~~~ 372 (397)
+++
T Consensus 385 ~~~ 387 (388)
T 1b9h_A 385 VAR 387 (388)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
No 122
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=1e-30 Score=248.55 Aligned_cols=292 Identities=17% Similarity=0.177 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850 43 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (397)
Q Consensus 43 ~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~ 114 (397)
..++++.++++++ +++++|++++|+++++.+++.++. ++||+|+++.++|+++...+. ...|.+++
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~ 158 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLI 158 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEE
Confidence 4667777777776 667899999999999999999887 789999999999999875432 12389999
Q ss_pred EeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc---
Q psy8850 115 YLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 180 (397)
Q Consensus 115 ~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--- 180 (397)
.+|.+. ++.+|++++++++++ ++++|++++++||||.++| +++|+++|++||+++|+|++|+.+..
T Consensus 159 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 238 (428)
T 1iay_A 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred EeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC
Confidence 999873 346899999999864 7899999999999999999 88999999999999999999985221
Q ss_pred -ccccCc---------cccc--EEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850 181 -DINIQN---------YKVD--LMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (397)
Q Consensus 181 -~~~~~~---------~~~d--~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (397)
..++.. ++.| +++.|+||.+|.+| +|+++++ ++....+.... ...+.+.....++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~ 309 (428)
T 1iay_A 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLA 309 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHH
T ss_pred CccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHH---------hcccCCHHHHHHHH
Confidence 111111 1156 88999999766555 5999884 43333333211 01233445555555
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-------ChHHHHHHh--C-C
Q psy8850 246 EAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--K-D 312 (397)
Q Consensus 246 ~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--~-~ 312 (397)
++++. ..+++++..+++.++++++.+.|++ + ++.+..+.. +.++++.++.. +..++.+.| + |
T Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 384 (428)
T 1iay_A 310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-V-GIKCLKNNA---GLFCWMDLRPLLRESTFDSEMSLWRVIINDVK 384 (428)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCSS---SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCe---eEEEEEechhhcCCCchhHHHHHHHHHHHhCC
Confidence 56653 2345778889999999999999998 5 665543322 45667777642 234566666 3 8
Q ss_pred cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
|.+.+|..|... ..+++||+++ ..+++++++++++|++++++
T Consensus 385 i~v~~~~~~~~~-----------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 385 LNVSPGSSFECQ-----------------EPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EECEEGGGGTCS-----------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred EEEeCchhhCCC-----------------CCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 999888655430 1378999998 47999999999999998754
No 123
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.97 E-value=5.3e-29 Score=241.02 Aligned_cols=316 Identities=16% Similarity=0.188 Sum_probs=226.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhh----c------cCCCEEEEcCCCChhh
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----K------KRGKHIITVQTEHKSV 99 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~----~------~~g~~vl~~~~~~~s~ 99 (397)
.|..++.......++.+++++++|.+ .+.+++++|||+|+..++.++.... . .++++|+++...|+++
T Consensus 126 ~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~ 205 (511)
T 3vp6_A 126 TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI 205 (511)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred CcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH
Confidence 34445666677888999999999997 4579999999999999988776421 0 1467999999999999
Q ss_pred HHHHHHHhhCCc---EEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHHHHHhcCcEEE
Q psy8850 100 LDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170 (397)
Q Consensus 100 ~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li 170 (397)
..++..+ |. +++.+|.+.++.+|+++|+++|+++ +++|++++++|++|.+.|+++|+++|++||+++|
T Consensus 206 ~~~~~~~---g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lh 282 (511)
T 3vp6_A 206 KKAGAAL---GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 282 (511)
T ss_dssp HHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHc---CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEE
Confidence 9998887 65 8999999988999999999999765 8899999999999999999999999999999999
Q ss_pred EecccccCcccc-----ccCc-ccccEEEecccc-ccCCCCceEEEEecCCC-Ccc----ccccccCCc---------cc
Q psy8850 171 CDAAQAVGKIDI-----NIQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNPR-TRI----EAQIHGGGH---------EY 229 (397)
Q Consensus 171 vD~a~~~~~~~~-----~~~~-~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~----~~~~~~~~~---------~~ 229 (397)
+|++|+.+.... .+.. .++|++++++|| +++|.|+|+++++++.. ... ..++..... ..
T Consensus 283 vD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 362 (511)
T 3vp6_A 283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK 362 (511)
T ss_dssp EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred EEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence 999999776522 1221 257999999999 66788899999986532 211 111111000 00
Q ss_pred cccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CC----
Q psy8850 230 GLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IE---- 302 (397)
Q Consensus 230 ~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---- 302 (397)
.... +.. ...+++.+++..+ .++++++.++..++++++++.|++ ++++.+..+.... ..++.+.+.. .+
T Consensus 363 ~~~~-~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~-~pg~~l~~~~~p~-~~~v~f~~~p~~~~~~~~ 438 (511)
T 3vp6_A 363 AIQC-GRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPE-HTNVCFWYIPQSLRGVPD 438 (511)
T ss_dssp SSCS-SCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTEEESSSSCCS-SSCEEEEECCGGGSSCCC
T ss_pred CCCC-CCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCC-eEEEEEEEeCcccccccc
Confidence 0111 111 2345566666655 457899999999999999999998 8899988731112 3445555421 10
Q ss_pred -----------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHH
Q psy8850 303 -----------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 303 -----------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~ 368 (397)
..++.+.|. |+.+... ... ....+++|+++ ...++.+||+++++.|++
T Consensus 439 ~~~~~~~l~~~~~~l~~~L~~~G~~~~~~-~~~-----------------~~~~~~lRi~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 439 SPQRREKLHKVAPKIKALMMESGTTMVGY-QPQ-----------------GDKANFFRMVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCEEEE-EEE-----------------TTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCEEEEE-EEe-----------------CCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 124555554 4332210 000 01125799999 677899999999999987
Q ss_pred HHHH
Q psy8850 369 KVKK 372 (397)
Q Consensus 369 ~~~~ 372 (397)
.-+.
T Consensus 501 ~~~~ 504 (511)
T 3vp6_A 501 LGQD 504 (511)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 7543
No 124
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=4.3e-31 Score=251.35 Aligned_cols=295 Identities=15% Similarity=0.095 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHh-----CCCCCc---EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcE
Q psy8850 42 AIEKARNEVAQLI-----YADPRE---IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR 112 (397)
Q Consensus 42 ~~~~~~~~la~~~-----~~~~~~---i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~ 112 (397)
...++++.+++++ ++++++ |++|+|+++|+.+++.++. ++||+|+++.++|+++...+.. . |.+
T Consensus 89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~~---g~~ 161 (430)
T 2x5f_A 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLVFNTRN---GAN 161 (430)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHTTTT---CCE
T ss_pred CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHHHHHhc---CCe
Confidence 3577888888888 888888 9999999999999999887 7899999999999998876665 4 999
Q ss_pred EEEeccCC-CCCCCHHHHHHHhcC---CceEEEEecccCccccccc---HHHHHHHHHh-----cCcEEEEecccccCcc
Q psy8850 113 VTYLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP---ILEIGELCRS-----KGVIFHCDAAQAVGKI 180 (397)
Q Consensus 113 v~~v~~~~-~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~-----~gi~livD~a~~~~~~ 180 (397)
++.+|.++ ++.+|++++++++++ +++++++++|+||||.++| +++|+++|++ ||+++|+|++|+....
T Consensus 162 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~ 241 (430)
T 2x5f_A 162 LQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFY 241 (430)
T ss_dssp EEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBC
T ss_pred EEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccC
Confidence 99999875 457899999999987 8899999999999999999 7889999999 9999999999984321
Q ss_pred ------cc--ccCc-ccc---cEEEeccccccCCCC--ceEEEE---ecCCCCccccccccCCccccccCCCCchhHHHH
Q psy8850 181 ------DI--NIQN-YKV---DLMSFSAHKIYGPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVG 243 (397)
Q Consensus 181 ------~~--~~~~-~~~---d~~~~s~~K~~g~~g--~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (397)
++ ++.. .+. ++++.|+||.+|++| +|++++ +++..+.+....... .+....+.+.....+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~a 318 (430)
T 2x5f_A 242 EDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL---IRSNISSGPLPTQSA 318 (430)
T ss_dssp SSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH---HHTTTSSCCHHHHHH
T ss_pred CcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh---hhcccCCCChHHHHH
Confidence 11 2222 244 688999999666445 699999 765544443322110 000123456666666
Q ss_pred HHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC---CcEe
Q psy8850 244 MGEAFR-L--ARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK---DIAV 315 (397)
Q Consensus 244 l~~al~-~--~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~ 315 (397)
+.++++ . +.+.+++..+++.++++++.+.|++.+ .++.+..+.. +.++++.+++.+..++.+.|. ||.+
T Consensus 319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v 395 (430)
T 2x5f_A 319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNS---GYFMAIKVHDVDPEALRKHLIDKYSIGV 395 (430)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCB---SSEEEEEESSSCHHHHHHHHHHHHCEEC
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCc---eEEEEeCCCCCCHHHHHHHHHHhCCEEE
Confidence 667777 3 233456688999999999999998311 2676655432 345677776556777777663 8888
Q ss_pred cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.+| . .+++||+++. .+++++++++++|+++++++
T Consensus 396 ~~g---~--------------------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 396 IAL---N--------------------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp EEC---S--------------------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred ecC---C--------------------CCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 776 1 2789999995 48999999999999998765
No 125
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.97 E-value=2.3e-29 Score=238.87 Aligned_cols=302 Identities=10% Similarity=0.075 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHH--HHHHHhHhhhcc--C---------CCEEEEcCCCChhhHHHHHHHh
Q psy8850 41 KAIEKARNEVAQLIYADPREIIWTSGATESNN--LAIKGAAHFYKK--R---------GKHIITVQTEHKSVLDSIRKLE 107 (397)
Q Consensus 41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~--~~l~~l~~~~~~--~---------g~~vl~~~~~~~s~~~~~~~~~ 107 (397)
....++++.+++++++++++|++|+|+++++. +++.++. . + |++|++..|+|+++...+...
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~- 144 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL- 144 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH-
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc-
Confidence 35678999999999999889999999999997 8888877 4 5 599999999999999888877
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHh--cCCceEEEE-ecccCcccccccHH---HHHHHH-HhcCcEEEEecccccCcc
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSV-MLVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGKI 180 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~-~~~~~~tG~~~~l~---~i~~l~-~~~gi~livD~a~~~~~~ 180 (397)
|.+++.+|.++++ +|+++|++++ .+++++|++ ++++||||.++|.+ +|+++| ++||+++|+|++|+....
T Consensus 145 --g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~ 221 (423)
T 3ez1_A 145 --GFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHL 221 (423)
T ss_dssp --TCEEEEEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBC
T ss_pred --CCEEEeccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhc
Confidence 9999999998766 8999999999 578898865 48999999999976 788888 999999999999983211
Q ss_pred -------cccc-------CcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850 181 -------DINI-------QNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (397)
Q Consensus 181 -------~~~~-------~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (397)
..++ ...+.++++.|+|| ++++.++|+++.+++....+...... .....+.....+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~ 294 (423)
T 3ez1_A 222 VEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGA-------QSIGPNKVEQARHV 294 (423)
T ss_dssp CSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHH-------SCSCCCHHHHHHHH
T ss_pred CCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhh-------hccCCCHHHHHHHH
Confidence 1111 12356799999999 54455689999987655554433211 11233444444444
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcC----cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850 246 EAFRL----ARIEMKEELKRILFLQKRLYNGLMESIE----EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV 315 (397)
Q Consensus 246 ~al~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~ 315 (397)
.+++. +.+.+.+..+.+.++++.+.+.|.+.++ ++.+..+.. +.++++.++..+...+...+. ||.+
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v 371 (423)
T 3ez1_A 295 KFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG---GYFISLDTAEPVADRVVKLAEAAGVSL 371 (423)
T ss_dssp HHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB---SSCEEEEESSSCHHHHHHHHHHTTEEC
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc---cEEEEEECCCCcHHHHHHHHHHCCcEE
Confidence 55543 2334555666666666666666554333 366554433 456778887656667777665 9999
Q ss_pred cc-cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 316 SS-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 316 ~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
.+ |..|..+ .....++|||+++.. +++++++++++|.++++++..
T Consensus 372 ~~~g~~~~~~--------------~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 372 TPAGATYPAG--------------QDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CCTTTTSSTT--------------CCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccccCC--------------CCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 98 5555421 012348999999864 899999999999999987754
No 126
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.97 E-value=1.1e-30 Score=247.49 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC-----EEEEc-CCCChhhHHHHHHHh
Q psy8850 40 EKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGK-----HIITV-QTEHKSVLDSIRKLE 107 (397)
Q Consensus 40 ~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~-----~vl~~-~~~~~s~~~~~~~~~ 107 (397)
.....++++.+++++ ++++++|++|+|+++|++++++++. ++|| +|+++ .++|+.+...+....
T Consensus 74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~ 149 (417)
T 3g7q_A 74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDD 149 (417)
T ss_dssp TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----C
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchh
Confidence 345667788888876 5677899999999999999999987 6766 89997 999988876654331
Q ss_pred ---hCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc
Q psy8850 108 ---NDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI 180 (397)
Q Consensus 108 ---~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~ 180 (397)
..+..+..++.+. ++.+|+++++ +++++++|++++++||||.++| +++|+++|++||+++|+|++|+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~ 227 (417)
T 3g7q_A 150 LFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP 227 (417)
T ss_dssp CEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred hhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc
Confidence 2245566666542 3468999998 7788999999999999999999 78899999999999999999974221
Q ss_pred cc-----ccCcccccEEEeccccccCCC--CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH--
Q psy8850 181 DI-----NIQNYKVDLMSFSAHKIYGPK--GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-- 251 (397)
Q Consensus 181 ~~-----~~~~~~~d~~~~s~~K~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-- 251 (397)
.. .....+.++++.|++|+ +.. ++|+++.+++....+...... +. ...+.....++.++++..
T Consensus 228 ~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~l~~~~~ 299 (417)
T 3g7q_A 228 GIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANMNGI------IS-LAPGGMGPAMMCEMIKRNDL 299 (417)
T ss_dssp CCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHHHHH------HC-CCCCSHHHHHHHHHHHTTCH
T ss_pred cccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHhhcc------ee-eCCCcHHHHHHHHHHcCcch
Confidence 11 11123678999999994 433 478888876555544432211 11 122333344443444421
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCC
Q psy8850 252 RIEMKE-ELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSA 324 (397)
Q Consensus 252 ~~~~~~-~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~ 324 (397)
.+...+ +.+++.++++.+.+.|.+.+++ +.+..+.. +.++++.++. .+..++...|. ||.+.+|..|.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~ 376 (417)
T 3g7q_A 300 LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEG---AIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPG 376 (417)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCB---SSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCc---ceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCC
Confidence 122333 5677788888888888775553 56655433 4566777764 56778887776 9999999877652
Q ss_pred CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 325 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
...+ .....++|||+++. +++++++++++|.++++++.+
T Consensus 377 ~~~~----------~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 377 LDKP----------WPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp BSSC----------CGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc----------cccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 1100 00114799999985 899999999999999988764
No 127
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.97 E-value=3.7e-29 Score=235.12 Aligned_cols=333 Identities=14% Similarity=0.064 Sum_probs=231.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRG 86 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g 86 (397)
..|+.+++++.+.+.... +.. .+...++++.++++++.+ ++++++||++|+.+++.++ . ++|
T Consensus 17 ~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~----~~g 79 (393)
T 1mdo_A 17 AMGAEELAAVKTVLDSGW-------ITT----GPKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI----GEG 79 (393)
T ss_dssp CCCHHHHHHHHHHHHHTC-------CSS----SHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred CCCHHHHHHHHHHHhcCC-------cCC----ChHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC----CCC
Confidence 356888999998886521 111 246788999999999986 7999999999999999988 5 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~ 165 (397)
++|+++.++|+++...+... |.+++.++.+++ +.+|++++++++++++++|++++ |+|.+.++++|.++|+++
T Consensus 80 d~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~ 153 (393)
T 1mdo_A 80 DEVITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERY 153 (393)
T ss_dssp CEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHH
T ss_pred CEEEeCCCccHhHHHHHHHC---CCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHc
Confidence 99999999999998877766 999999999864 67999999999998999988764 799999999999999999
Q ss_pred CcEEEEecccccCccccccCccc-ccEEEeccc--cccCCCCceEEEEe-cCCCCccccccccCCc-----------ccc
Q psy8850 166 GVIFHCDAAQAVGKIDINIQNYK-VDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGH-----------EYG 230 (397)
Q Consensus 166 gi~livD~a~~~~~~~~~~~~~~-~d~~~~s~~--K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~-----------~~~ 230 (397)
|+++|+|++|+.|... +...++ .|++++|+| |++++..+|+++.+ ++..+.+.+....+.. ...
T Consensus 154 ~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (393)
T 1mdo_A 154 GIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 232 (393)
T ss_dssp TCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------C
T ss_pred CCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccccc
Confidence 9999999999976533 222234 899999999 84444346888886 4444444332221110 011
Q ss_pred c---cCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC---CCCCCceEEEEec----
Q psy8850 231 L---RSGT-LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM---NNRIPHNLNISFN---- 299 (397)
Q Consensus 231 ~---~~~~-~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~---- 299 (397)
+ ..|+ .....+.+. .++.. .+.+++..++..++++++.+.|.+ ++ +.+...+ ......++++.++
T Consensus 233 ~~~~~~g~~~~~~~~~~a-~~~~~-l~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 308 (393)
T 1mdo_A 233 AEVLAPGYKYNLPDLNAA-IALAQ-LQKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEARC 308 (393)
T ss_dssp CEESSCCCBCCCCHHHHH-HHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHHH
T ss_pred ccccccCccCCCCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEeccccc
Confidence 1 1121 011111111 11111 234566777788899999999988 65 6665322 1122456777776
Q ss_pred CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCC----c---cccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCN----D---ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~----~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
+.+..++.+.|. ||.+.+|..+.... ..... +.. + ....+.||+++...++++|+++++++|++++
T Consensus 309 ~~~~~~l~~~l~~~gi~v~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 383 (393)
T 1mdo_A 309 GITRDALMASLKTKGIGTGLHFRAAHTQ----KYYRE-RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 383 (393)
T ss_dssp SSCHHHHHHHHHHTTBCCBCCCCCGGGS----HHHHH-HSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCCcccccCccccC----hhhhc-cCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 457778888876 89888876552110 11111 110 0 0124689999998899999999999999887
Q ss_pred HHH
Q psy8850 371 KKL 373 (397)
Q Consensus 371 ~~~ 373 (397)
+.+
T Consensus 384 ~~~ 386 (393)
T 1mdo_A 384 GQG 386 (393)
T ss_dssp C--
T ss_pred hcC
Confidence 654
No 128
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.97 E-value=1.3e-29 Score=237.70 Aligned_cols=307 Identities=15% Similarity=0.080 Sum_probs=220.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g 110 (397)
.|.+++...+...++++.++++++.+ ++++++||++|+++++.++. ++|++|+++.++|+++...+... ...|
T Consensus 57 ~~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g 130 (392)
T 3qhx_A 57 GYEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWN 130 (392)
T ss_dssp TBCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence 45555566678899999999999987 68999999999999999886 78999999999999988877544 3449
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d 190 (397)
.+++.++.+ |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+... +...+++|
T Consensus 131 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~-~~~~~~~d 204 (392)
T 3qhx_A 131 VEYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ-QPLSLGAD 204 (392)
T ss_dssp CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-CGGGGTCS
T ss_pred cEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccC-ChHHhCCc
Confidence 999999876 899999999999999999999999999999999999999999999999999865332 23345799
Q ss_pred EEEeccccccCCCC---ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 191 LMSFSAHKIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 191 ~~~~s~~K~~g~~g---~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
+++.|+||++|+.| +|+++.++ +....+...... .....+....+.....++. +..+.++..+++
T Consensus 205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----l~~~~~~~~~~~ 273 (392)
T 3qhx_A 205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG-------AGAVPGPFDAYLTMRGLKT----LVLRMQRHSENA 273 (392)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred EEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHH
Confidence 99999999666544 68888874 333333222111 0112233333333233332 344566777888
Q ss_pred HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCC----C
Q psy8850 267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTS----A 324 (397)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~----~ 324 (397)
+++.+.|++ .+.+..+..+. ...+.++.|.+++ .....+...++ ++.+..|..++. .
T Consensus 274 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~ 352 (392)
T 3qhx_A 274 AAVAEFLAE-HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPS 352 (392)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGG
T ss_pred HHHHHHHhc-CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcc
Confidence 888889988 77765442222 1236688888876 34567777776 677777776543 1
Q ss_pred CCChhhHHH-hhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850 325 SLEPSYVLR-ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (397)
Q Consensus 325 ~~~~~~~~~-~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 366 (397)
.+.++.... ..|+ .++.||||++...+++.++.+.++|
T Consensus 353 ~~~~~~~~~~~~g~----~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 353 AMTHASTAGSQLEV----PDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp GTSCGGGBTTBCCC----CTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred cccccccCHHHcCC----CCCeEEEEeccCCHHHHHHHHHHHh
Confidence 121111111 1222 3588999999877777777776665
No 129
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.97 E-value=1.9e-29 Score=240.05 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=225.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFY 82 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~i~~~~g~t~a~~~~l~~l~~~~ 82 (397)
.++|+.|++++.+.+.... +... .+. |.......++++.+++++ ++++++|++++|+++++.++ ..+.
T Consensus 68 ~~~~~~v~~a~~~~~~~~~-~~~~-~~~--y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l~--- 139 (432)
T 3ei9_A 68 EPIPEVITSAMAKKAHELS-TIEG-YSG--YGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVMF--- 139 (432)
T ss_dssp SCCCHHHHHHHHHHHHHTT-STTT-CCC--CCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH---
T ss_pred CCCCHHHHHHHHHHHhccc-ccCC-ccC--CCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHHc---
Confidence 3678999999999987532 2111 111 111224567788888876 77888999999999999874 5566
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCC---------cEEEEeccCCCC--CCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDG---------FRVTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGV 151 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g---------~~v~~v~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~~~~tG~ 151 (397)
++||+|+++.++|+++...+...+..| .+++.++.+..+ ..|++ + .+++++|++++++||||.
T Consensus 140 -~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~--~~~~~~v~l~~p~NPtG~ 213 (432)
T 3ei9_A 140 -GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLS---T--VGRTDIIFFCSPNNPTGA 213 (432)
T ss_dssp -CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGG---G--CCCCSEEEEESSCTTTCC
T ss_pred -CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChh---h--CCCCCEEEEeCCCCCCCC
Confidence 789999999999999999888774333 367788887432 33433 2 357899999999999999
Q ss_pred ccc---HHHHHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCC----
Q psy8850 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPR---- 215 (397)
Q Consensus 152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~---- 215 (397)
++| +++|+++|++||++||+|++|+.... +..+.. .+.++++.|++|.+|..| +|+++++++..
T Consensus 214 ~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~ 293 (432)
T 3ei9_A 214 AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDG 293 (432)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTS
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcch
Confidence 988 56677779999999999999983321 112211 245799999999666445 79999887662
Q ss_pred ----CccccccccCCccccccCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q psy8850 216 ----TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 290 (397)
Q Consensus 216 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 290 (397)
..+.... ....++.+.....+..+++. ...++++++.+++.++++++.+.|++ + ++.+..+..
T Consensus 294 ~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--- 361 (432)
T 3ei9_A 294 FPVAKDFNRII-------CTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L-GYDVYGGKN--- 361 (432)
T ss_dssp CBHHHHHHHHH-------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEECSS---
T ss_pred HHHHHHHHHHh-------ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-CceecCCCc---
Confidence 2222111 11123445555555545553 33346788899999999999999998 5 666664333
Q ss_pred CceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850 291 PHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 367 (397)
+.++++.+++.+..++...+. ||.+.+|..|.+ .+.+++||++. .+++++++++++|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~-----------------~~~~~iRis~~--~~~e~l~~~l~rl~ 422 (432)
T 3ei9_A 362 APYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGP-----------------GGEGFVRVSAF--GHRENILEACRRFK 422 (432)
T ss_dssp SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHH
Confidence 456778887666777776653 899999876653 12489999985 48999999999998
Q ss_pred HHHH
Q psy8850 368 MKVK 371 (397)
Q Consensus 368 ~~~~ 371 (397)
+-..
T Consensus 423 ~~~~ 426 (432)
T 3ei9_A 423 QLYK 426 (432)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 7543
No 130
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.97 E-value=2.2e-30 Score=246.15 Aligned_cols=303 Identities=12% Similarity=0.054 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHH--HHHHHHhHhhhcc--C----------CCEEEEcCCCChhhHHHHHH
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKK--R----------GKHIITVQTEHKSVLDSIRK 105 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~--~~~l~~l~~~~~~--~----------g~~vl~~~~~~~s~~~~~~~ 105 (397)
.....++++.+++++++++++|++|+|+++++ ++++.++. + + ||+|++.+|+|+++...+..
T Consensus 77 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~ 152 (427)
T 3ppl_A 77 LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFSITER 152 (427)
T ss_dssp SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH
Confidence 34568899999999999989999999999999 58888776 4 4 89999999999999888877
Q ss_pred HhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEe-cccCcccccccHH---HHHHHH-HhcCcEEEEecccccCc
Q psy8850 106 LENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVM-LVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGK 179 (397)
Q Consensus 106 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~-~~~~~tG~~~~l~---~i~~l~-~~~gi~livD~a~~~~~ 179 (397)
. |.+++.+|.+++| +|+++|+++++ +++++|++. +++||||.++|.+ +|+++| ++||++||+|++|+...
T Consensus 153 ~---g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~ 228 (427)
T 3ppl_A 153 F---GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHT 228 (427)
T ss_dssp T---TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred c---CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 7 9999999998776 99999999995 678888755 8899999999976 888888 99999999999998421
Q ss_pred c------ccccC-------cccccEEEeccccc-cCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850 180 I------DINIQ-------NYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (397)
Q Consensus 180 ~------~~~~~-------~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (397)
. +.++. ..+.++++.|+||. +.+.++|++++++++...+...... .....+.....++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~-------~~~~~~~~~q~~~~ 301 (427)
T 3ppl_A 229 LTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGI-------RGIGPNKVNQLAHA 301 (427)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHH-------HCSCCCHHHHHHHH
T ss_pred cCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhc-------ccCCCCHHHHHHHH
Confidence 1 11211 23567999999994 3344589988886554444332211 11123334444444
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc
Q psy8850 246 EAFRL---ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS 317 (397)
Q Consensus 246 ~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~ 317 (397)
.+++. +.+.+.+..+.+.++++.+.+.|.+.++ ++.+..+.. +.++++.++..+..++...|. ||.+.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v~~ 378 (427)
T 3ppl_A 302 RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG---GYFISLDVVPGTASRVAELAKEAGIALTG 378 (427)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSB---SSCEEEECSTTCHHHHHHHHHHTTEECCC
T ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCc---cEEEEEECCcchHHHHHHHHHHCCCEEec
Confidence 44442 2345666777777777777777755333 455554433 556778887656777777775 999999
Q ss_pred cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
|..+.... .....+++||+++.. +++++++++++|.++++++.
T Consensus 379 ~g~~~~~~-------------~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 379 AGSSYPLR-------------QDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp TTTTSGGG-------------CCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCCC-------------CCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 54333200 011248999999764 89999999999999998764
No 131
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.97 E-value=2.4e-29 Score=236.24 Aligned_cols=335 Identities=13% Similarity=0.152 Sum_probs=231.9
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh---
Q psy8850 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF--- 81 (397)
Q Consensus 5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~--- 81 (397)
+..+.++++++++.+.+.... +.. .+...++++.++++++.+ ++++++|||+|+.+++.++...
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~ 75 (390)
T 3b8x_A 9 ASSTWDDLEYKAIQSVLDSKM-------FTM----GEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKP 75 (390)
T ss_dssp CCCCCCHHHHHHHHHHHHHTC-------CSS----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCCHHHHHHHHHHHHcCC-------CCC----ChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhc
Confidence 344568999999999887521 111 346788999999999987 6888999999999999987200
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
..++|++|+++.++|+++...+... |.+++.++.+++ +.+|++++++++++++++|++++ ++|...|+++|.+
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~ 149 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYPLQQY---GLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK 149 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence 0168899999999999999887766 999999999864 88999999999999999998874 5788899999999
Q ss_pred HHHhcCcEEEEecccccCccccccCcccc--cEEEecc--cc-ccCCCCceEEEEec-CCCCccccccccC--Cc-----
Q psy8850 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKV--DLMSFSA--HK-IYGPKGIGALYIRR-NPRTRIEAQIHGG--GH----- 227 (397)
Q Consensus 161 l~~~~gi~livD~a~~~~~~~~~~~~~~~--d~~~~s~--~K-~~g~~g~g~~~~~~-~~~~~~~~~~~~~--~~----- 227 (397)
+|++||+++|+|++|+.|... +...++. |+.++|+ +| +.++.| |+++.++ +....+.+...++ ..
T Consensus 150 l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 227 (390)
T 3b8x_A 150 IIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKN 227 (390)
T ss_dssp HHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEE
T ss_pred HHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccc
Confidence 999999999999999977654 3333343 5666553 34 555555 8888875 3333333322221 00
Q ss_pred ------------------cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCC
Q psy8850 228 ------------------EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 289 (397)
Q Consensus 228 ------------------~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 289 (397)
..+++.++++....+++.. ++ .++++.++..++++++.+.|++ ++++.+..++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~----~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~ 301 (390)
T 3b8x_A 228 KVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LK----KLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGES 301 (390)
T ss_dssp TTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBC
T ss_pred cccccccccccccccceeccccccCcCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCc
Confidence 0112233555555555532 43 4567888889999999999998 8888876543222
Q ss_pred CCceEEEEec---CCChHHHHHHhC--CcEeccc---CccCC-CCCCh-hhH-HHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 290 IPHNLNISFN---FIEGESLLMAIK--DIAVSSG---SACTS-ASLEP-SYV-LRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 290 ~~~~~~~~~~---~~~~~~~~~~l~--~i~~~~g---~~~~~-~~~~~-~~~-~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
....+.+.++ +.+..++.+.|. ||.+... ..|.. ..... +.. +..++.......+.|||+++..+|++|
T Consensus 302 ~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d 381 (390)
T 3b8x_A 302 SWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE 381 (390)
T ss_dssp CCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred ccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence 2334566666 346778888886 8887752 22211 00000 000 011111222334689999999999999
Q ss_pred HHHHHHHH
Q psy8850 359 IDFTIKLL 366 (397)
Q Consensus 359 i~~~~~~l 366 (397)
|+++++.|
T Consensus 382 i~~i~~~l 389 (390)
T 3b8x_A 382 IDYLREVL 389 (390)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999886
No 132
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.97 E-value=8.5e-30 Score=240.06 Aligned_cols=319 Identities=14% Similarity=0.107 Sum_probs=219.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH--hC-CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL--IY-ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~-~~~~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
++++.+++++.+.+.... ++.. .+. |.......++++.++++ .| +++++|++++|+++++.+++. +. +
T Consensus 46 ~~~~~v~~a~~~~~~~~~-~~~~-~~~--y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~-~~----~ 116 (400)
T 3asa_A 46 PLNASVAEAFASSIARLS-SPTT-CRG--YGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLS-FF----G 116 (400)
T ss_dssp CCCHHHHHHHHHHHHHHT-SSSC-CCC--CCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHH-HH----C
T ss_pred CCCHHHHHHHHHHHhccc-cccc-ccC--CCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHH-Hc----C
Confidence 578899999999887532 1111 111 11123467889999999 57 677899999999999998654 44 6
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 160 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~ 160 (397)
+||+|++..++|+++...+... |.+ ++.+|.++++.++.+ +++. +++++|++++++||||.++| +++|++
T Consensus 117 ~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~-l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~ 190 (400)
T 3asa_A 117 PNQTVAIQDPSYPAYLDIARLT---GAKEIIALPCLQENAFFPE-FPED--THIDILCLCSPNNPTGTVLNKDQLRAIVH 190 (400)
T ss_dssp SSCEEEEEESCCHHHHHHHHHT---TCSEEEEEECCGGGTTCCC-CCTT--CCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHHc---CCcceEecccchhcCcccC-hhhc--cCccEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 8899999999999998776665 888 899988753322221 2221 57899999999999999998 567889
Q ss_pred HHHhcCcEEEEecccc-cC---ccccccCcc----cccEEEeccccccCCCC--ceEEEEecCCC-------Cccccccc
Q psy8850 161 LCRSKGVIFHCDAAQA-VG---KIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPR-------TRIEAQIH 223 (397)
Q Consensus 161 l~~~~gi~livD~a~~-~~---~~~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~-------~~~~~~~~ 223 (397)
+|+++|+++|+|++|+ +. ..+.++..+ +.++++.|++|.+|++| +|+++++++.. ..+....
T Consensus 191 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~- 269 (400)
T 3asa_A 191 YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERF- 269 (400)
T ss_dssp HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHH-
T ss_pred HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHH-
Confidence 9999999999999998 32 222233222 24588999999766555 79999887653 2211100
Q ss_pred cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE-ec-CC
Q psy8850 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS-FN-FI 301 (397)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 301 (397)
.....++.+.....++.++++.. ++++..++++++++++.+.|++ + ++.+..+.. +.++++. ++ +.
T Consensus 270 -----~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~ 337 (400)
T 3asa_A 270 -----LSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEH---APYLWVKPTQANI 337 (400)
T ss_dssp -----HHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSS---SSEEEEECCCTTC
T ss_pred -----hccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---ceEEEEeccCCCC
Confidence 01112345555555555666543 4677888999999999999998 5 777665432 4566777 65 23
Q ss_pred ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+..++...|. ||.+.+|..|.+ ...+++||++ ..+++++++++++|+++++++
T Consensus 338 ~~~~~~~~l~~~~gv~v~~g~~f~~-----------------~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 338 SDRDLFDFFLREYHIAITPGIGFGR-----------------SGSGFVRFSS--LGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp CTTTHHHHHHHHHSEECEEGGGGCG-----------------GGTTCEEEEC--CSCHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHhCCEEEeChhHhCC-----------------CCCCEEEEEe--eCCHHHHHHHHHHHHHHHHhh
Confidence 4556665552 899999876643 1237899995 468999999999999887654
No 133
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.97 E-value=3.1e-30 Score=243.62 Aligned_cols=334 Identities=17% Similarity=0.163 Sum_probs=236.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhc--cCCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++..+.|+.+++++.+.+... .++|.. .+..+.......+ .+++.+++++|+++++++++ +|++|+.+++.++.
T Consensus 30 ~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~-sGt~a~~~~~~~~~- 106 (407)
T 2dkj_A 30 ASENFVSKQVREAVGSVLTNKYAEGYPGA-RYYGGCEVIDRVESLAIERAKALFGAAWANVQPH-SGSQANMAVYMALM- 106 (407)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS-SHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHhhhhcCcccCCCcc-cccCCchHHHHHHHHHHHHHHHHhCCCcceEEec-chHHHHHHHHHHhc-
Confidence 444566999999999988641 223333 1211222222333 46789999999985445444 55679999999886
Q ss_pred hhccCCCEEEEcCCCChhhH---HHHHHHhhCCc--EEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcccccc
Q psy8850 81 FYKKRGKHIITVQTEHKSVL---DSIRKLENDGF--RVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQ 153 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~---~~~~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~ 153 (397)
++|++|+++.++|+++. ..+... |. .++.++++ .++.+|++++++++++ ++++|++++++|| ...
T Consensus 107 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~ 178 (407)
T 2dkj_A 107 ---EPGDTLMGMDLAAGGHLTHGSRVNFS---GKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFW 178 (407)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHH---HHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCC
T ss_pred ---CCCCEEEEecccccCccchHHHHHhc---CceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCC
Confidence 78999999999998884 333333 44 45555544 3678999999999985 8999999888886 778
Q ss_pred cHHHHHHHHHhcCcEEEEecccccCccccccCc---ccccEEEecccc-ccCCCCceEEEEe-cCCCCccccccccCCcc
Q psy8850 154 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHE 228 (397)
Q Consensus 154 ~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~---~~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~ 228 (397)
|+++|.++|++||+++|+|++|+.|....+... -..|++++|+|| +.|+.| |+++++ ++..+.+......
T Consensus 179 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~---- 253 (407)
T 2dkj_A 179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFP---- 253 (407)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcc----
Confidence 999999999999999999999986443222110 137999999999 667775 999998 4555554443221
Q ss_pred ccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES 305 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 305 (397)
+..++++...+.++.++++... .+++++.+++.++++++.+.|++ + ++.+..++. .+.++++.++. .+..+
T Consensus 254 --~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 327 (407)
T 2dkj_A 254 --GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGT--DNHLFLVDLRPKGLTGKE 327 (407)
T ss_dssp --TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred --cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCC--CceEEEEECcccCCCHHH
Confidence 2234566666767778888763 57889999999999999999999 5 777765322 25677787763 35677
Q ss_pred HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHH
Q psy8850 306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~ 372 (397)
+.+.|. ||.+.+|..+.. ......++++|++++.+ .+++++++++++|++++++
T Consensus 328 ~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 328 AEERLDAVGITVNKNAIPFD-------------PKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHTTEECEECCCTTC-------------SSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCceecCCcCccc-------------cccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 777775 899988763211 00011236899999642 6899999999999999877
No 134
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=1.8e-29 Score=233.50 Aligned_cols=303 Identities=15% Similarity=0.102 Sum_probs=221.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
.++++.+++++.+.+.....++.. ...++++++++++++++++|++|+|+++|+.+++.++. |
T Consensus 27 ~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~------g 89 (350)
T 3fkd_A 27 DGDKDHLEKHLVENLNCIRHYPEP-----------DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR------G 89 (350)
T ss_dssp CSCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT------T
T ss_pred CCCCHHHHHHHHHhHhHHhcCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC------C
Confidence 356899999999888554433322 12578999999999988899999999999999999764 7
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~ 165 (397)
|+|+++.++|+++...+... |.+++.+|. ++.+.+++ +++++|++++++||||.++|.+++.++++.+
T Consensus 90 d~Vi~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~ 158 (350)
T 3fkd_A 90 SRSLIAIPSFAEYEDACRMY---EHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDH 158 (350)
T ss_dssp CEEEEEESCCHHHHHHHHHT---TCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHC
T ss_pred CEEEEeCCCcHHHHHHHHHc---CCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhC
Confidence 99999999999998777776 999999998 65444544 6789999999999999999999999998887
Q ss_pred C-cEEEEecccccCccc-----cccCcccccEEEeccccccCCC--CceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850 166 G-VIFHCDAAQAVGKID-----INIQNYKVDLMSFSAHKIYGPK--GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (397)
Q Consensus 166 g-i~livD~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
+ .+||+|++|+..... ..+...+.++++.|++|.+|+. ++|+++++++..+.+..... ..+.+
T Consensus 159 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~ 229 (350)
T 3fkd_A 159 PDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST---------PWAVN 229 (350)
T ss_dssp TTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC---------TTCSC
T ss_pred CCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC---------CCCCC
Confidence 5 799999999733221 1222335678999999965533 47998887655544443321 22455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC---CcE
Q psy8850 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK---DIA 314 (397)
Q Consensus 238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~ 314 (397)
.....++.++++......+.+.+ ..++++++.+.|++ ++++.+..+. +.++++.++..+..++.+.|. ||.
T Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~gi~ 303 (350)
T 3fkd_A 230 ALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNR-LDGVEVHPSG----TTFFLLRLKKGTAAELKKYMLEEYNML 303 (350)
T ss_dssp HHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHH-STTEEECCCS----SSEEEEEESSSCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhc-CCCcEECCCC----CcEEEEECCCCCHHHHHHHHHHHCCEE
Confidence 55555555566532212223333 33888999999988 7888875432 445567777556777877764 899
Q ss_pred ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.+|..|.. ...+++||+++ +.+++++++++|+++.++
T Consensus 304 v~~g~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 304 IRDASNFRG-----------------LDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp CEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred EEeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 999876643 12489999987 689999999998877643
No 135
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=9.7e-30 Score=238.57 Aligned_cols=308 Identities=14% Similarity=0.126 Sum_probs=219.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g 110 (397)
.|.+++...+...++++.++++++.+ +.++++||++|+++++. +. ++||+|+++.+.|++....+.. +...|
T Consensus 46 ~~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G 118 (393)
T 1n8p_A 46 TYEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp SCCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred CcceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 34455555567899999999999987 56666777999999999 76 7899999999999987766543 34459
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc----CcEEEEecccccCccccccCc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK----GVIFHCDAAQAVGKIDINIQN 186 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~----gi~livD~a~~~~~~~~~~~~ 186 (397)
.+++.+|.+ | +++++++++++++|++++++||+|.+.|+++|.++|+++ |+++|+|++|+.+... +...
T Consensus 119 ~~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~ 191 (393)
T 1n8p_A 119 VETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLN 191 (393)
T ss_dssp SCCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGG
T ss_pred cEEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHH
Confidence 999999876 7 899999999999999999999999999999999999999 9999999999866542 3444
Q ss_pred ccccEEEeccccccCCCC--c-eEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 187 YKVDLMSFSAHKIYGPKG--I-GALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 262 (397)
Q Consensus 187 ~~~d~~~~s~~K~~g~~g--~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~ 262 (397)
+++|++++|+||++|+.| + |+++++ ++..+.+...... ..++.+....+.+..+++. +....++.
T Consensus 192 ~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----~~~~~~~~ 260 (393)
T 1n8p_A 192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA-------IGAIPSPFDAWLTHRGLKT----LHLRVRQA 260 (393)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHH
T ss_pred cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhccch----HHHHHHHH
Confidence 579999999999777766 5 888885 4444444322110 0112233333333334443 34455666
Q ss_pred HHHHHHHHHHHhhhcCc-EEEe-CCCC-------------CC-C-CceEEEEecCC--ChHHHHHHhC--CcEecccCcc
Q psy8850 263 LFLQKRLYNGLMESIEE-IYIN-GDMN-------------NR-I-PHNLNISFNFI--EGESLLMAIK--DIAVSSGSAC 321 (397)
Q Consensus 263 ~~~~~~l~~~l~~~~~~-~~~~-~~~~-------------~~-~-~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~ 321 (397)
.++++.+.+.|.+ .+. +..+ .+.- .. . +.++.|.+++. +...+...+. ++.++.|+.|
T Consensus 261 ~~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~ 339 (393)
T 1n8p_A 261 ALSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIE 339 (393)
T ss_dssp HHHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSS
T ss_pred HHHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCc
Confidence 6777788888877 554 4322 1100 01 3 67888888753 3455666665 5677777766
Q ss_pred CCCCC--Ch------hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 322 TSASL--EP------SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 322 ~~~~~--~~------~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
+.+.. .+ ...+..+|+. .+.||+|++.++++++++.+.++|+++
T Consensus 340 s~~~~p~~~~h~~~~~~~~~~~g~~----~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 340 SLLEVPAVMTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CEEECTTTTTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ceeeccccccccccCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 53211 11 1234566655 389999999999999999999998764
No 136
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.97 E-value=8e-30 Score=241.69 Aligned_cols=322 Identities=12% Similarity=0.029 Sum_probs=221.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC-CCC---cEEEeCChhHHHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-DPR---EIIWTSGATESNNLAI 75 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~-~~~---~i~~~~g~t~a~~~~l 75 (397)
|.....++++.+.+++.+.... ... |. ......++++.+++++ +. .++ +|++|+|+++|+.+++
T Consensus 50 ~~~~~~~~~~~v~~a~~~~~~~~~~~------y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 119 (418)
T 3rq1_A 50 DEEGNLVFLKTVKEEYLSLSDSEHVG------YA----PIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLI 119 (418)
T ss_dssp CTTSCBCCCHHHHHHHHTCCHHHHHS------CC----CTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhcccccCC------CC----CCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHH
Confidence 3345667788888888764432 111 11 1113456677777755 21 245 8999999999999999
Q ss_pred HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcC----Cce-EEEEecc-cCc
Q psy8850 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICS----DTI-LVSVMLV-NNE 148 (397)
Q Consensus 76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~----~~~-~v~~~~~-~~~ 148 (397)
.++. ++||+|+++.|+|+++...+... |.+++.+|.+ +++.+|++++++++++ +++ ++++++| +||
T Consensus 120 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NP 192 (418)
T 3rq1_A 120 HNYT----EPGDEVLTADWYWGAYRVICSDT---GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNP 192 (418)
T ss_dssp HHHS----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTT
T ss_pred HHhc----CCCCEEEECCCCchhHHHHHHHc---CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCC
Confidence 9887 79999999999999998887776 9999999985 5568999999999975 666 8889889 999
Q ss_pred ccccccHH---HHHHHHH------hcCcEEEEecccccCcc------cc--ccCccccc---EEEeccccccCCCC--ce
Q psy8850 149 IGVIQPIL---EIGELCR------SKGVIFHCDAAQAVGKI------DI--NIQNYKVD---LMSFSAHKIYGPKG--IG 206 (397)
Q Consensus 149 tG~~~~l~---~i~~l~~------~~gi~livD~a~~~~~~------~~--~~~~~~~d---~~~~s~~K~~g~~g--~g 206 (397)
||.++|.+ +|+++|+ +||+++|+|++|..... ++ .......+ +++.|++|.+|..| +|
T Consensus 193 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G 272 (418)
T 3rq1_A 193 TGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVG 272 (418)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCE
T ss_pred CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcce
Confidence 99999965 4556666 89999999999862221 10 11111223 77889999655444 79
Q ss_pred EEEE---ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8850 207 ALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESI 277 (397)
Q Consensus 207 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~ 277 (397)
++++ +++..+.+....... .....+..+.....++.++++. +.+...++.+++.++++++.+.|++ +
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~ 348 (418)
T 3rq1_A 273 AMIGISDDEEIADEFFEVNKST---SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-V 348 (418)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH---HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred EEEEEeCCHHHHHHHHHHHHHH---HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 9888 555544443321100 0001123455555555555532 2334556778899999999999998 5
Q ss_pred CcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850 278 EEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (397)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~ 355 (397)
++.+..+.. +.++++.+ .+..++.+.|. ||.+.+| .+++||+++ .++
T Consensus 349 -g~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~gi~v~~g------------------------~~~iRis~~-~~~ 397 (418)
T 3rq1_A 349 -GLPMLPYRG---GFFITIPT--DSANAICEELKKEHIYVIAL------------------------ANGIRIAAC-GIP 397 (418)
T ss_dssp -TCCCCCCCS---SSEEEEEC--TTHHHHHHHHHHTTEECEEC------------------------SSEEEEEGG-GSC
T ss_pred -CCCCCCCCc---eEEEEcCC--CCHHHHHHHHHhCCEEEecC------------------------CCCeEEEEe-cCC
Confidence 665554332 23334443 35667777665 8888876 277999987 368
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8850 356 EKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 356 ~~~i~~~~~~l~~~~~~~~~ 375 (397)
++++++++++|+++++++.+
T Consensus 398 ~~~i~~~~~~l~~~l~~~~~ 417 (418)
T 3rq1_A 398 KCQMTGLAEKIYNAMKSLGK 417 (418)
T ss_dssp HHHHTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999987653
No 137
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.97 E-value=4.5e-29 Score=236.72 Aligned_cols=302 Identities=12% Similarity=0.056 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChhHHH--HHHHHHhHhhhccC------------CCEEEEcCCCChhhHHHHHHH
Q psy8850 41 KAIEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKKR------------GKHIITVQTEHKSVLDSIRKL 106 (397)
Q Consensus 41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~--~~~l~~l~~~~~~~------------g~~vl~~~~~~~s~~~~~~~~ 106 (397)
....++++.+++++++++++|++|+|+++++ .+++.++. ++ +++|++..|+|+++...+...
T Consensus 76 ~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~ 151 (422)
T 3d6k_A 76 LGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF 151 (422)
T ss_dssp SCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHHHHc
Confidence 3468899999999999989999999999997 67777776 33 347999999999999888877
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEE-EecccCcccccccHH---HHHHHHH-hcCcEEEEeccccc---
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVS-VMLVNNEIGVIQPIL---EIGELCR-SKGVIFHCDAAQAV--- 177 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~-~~~~~~~tG~~~~l~---~i~~l~~-~~gi~livD~a~~~--- 177 (397)
|.+++.+|.++++ +|++++++++++ ++++|+ +++++||||.++|.+ +|+++|+ +||++||+|++|+.
T Consensus 152 ---g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~ 227 (422)
T 3d6k_A 152 ---GFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL 227 (422)
T ss_dssp ---TCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred ---CCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccccc
Confidence 9999999998766 899999999986 788887 789999999999965 7888888 99999999999973
Q ss_pred Ccc---cccc-------CcccccEEEeccccccCC-CCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850 178 GKI---DINI-------QNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE 246 (397)
Q Consensus 178 ~~~---~~~~-------~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (397)
... ...+ ...+.++++.|++|..++ ..+|+++++++....+...... + ..+.+.....+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~------~-~~~~~~~~q~a~~~ 300 (422)
T 3d6k_A 228 SDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANV------R-GIGPNKLNQLAHAQ 300 (422)
T ss_dssp SSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHH------H-CSCCCHHHHHHHHH
T ss_pred CCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHh------h-cCCCCHHHHHHHHH
Confidence 110 1111 123568999999995332 2489999886655544432211 1 12344455555556
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc-
Q psy8850 247 AFRL---ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS- 317 (397)
Q Consensus 247 al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~- 317 (397)
+++. +.+++++..+.++++++++.+.|.+.++ ++.+..+.. +.++++.++..+...+...+. ||.+.+
T Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 377 (422)
T 3d6k_A 301 FFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTG---GYFISVDVVPGTASRVVELAKEAGIALTGA 377 (422)
T ss_dssp HHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSB---SSCEEEEESTTCHHHHHHHHHHTTEECCCT
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCc---ceEEEEECCCCCHHHHHHHHHHCCeEEEcC
Confidence 6643 2345667777778888888777765333 355554433 456777877545566666665 999998
Q ss_pred cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
|..|..+. ....+++||+++. ++++++++++++|+++++++.+
T Consensus 378 g~~f~~~~--------------~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 378 GSSFPLHN--------------DPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp TTTSGGGC--------------CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC--------------CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 44443100 0123789999997 7999999999999999877643
No 138
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1e-28 Score=232.61 Aligned_cols=307 Identities=14% Similarity=0.117 Sum_probs=220.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g 110 (397)
.|.+++...+...++++.+++++|.+ ++++++||++|+.+++.++. ++||+|+++.+.|+++...+.. +...|
T Consensus 72 ~~~y~r~~~p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g 145 (414)
T 3ndn_A 72 HYVYSRYGNPTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSEILPRWG 145 (414)
T ss_dssp CCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred CcCcCCCCChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHHHHHHcC
Confidence 34444555668899999999999975 78999999999999999887 7999999999999998877754 23459
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d 190 (397)
.+++.+|.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.... ....++|
T Consensus 146 ~~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~d 219 (414)
T 3ndn_A 146 VQTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-GFPLGVD 219 (414)
T ss_dssp CEEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-CGGGTCS
T ss_pred cEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCC
Confidence 999999886 8999999999999999999999999999999999999999999999999998654322 2245789
Q ss_pred EEEeccccccCCCC---ceEEEEecCCCC-ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 191 LMSFSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 191 ~~~~s~~K~~g~~g---~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
+++.|++|.+|+.| +|+++++++... .+...... ..++.+....+.....++ .+..+.++..+++
T Consensus 220 iv~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~-------~g~~~~~~~a~~~~~~l~----~l~~r~~~~~~~a 288 (414)
T 3ndn_A 220 VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH-------TGPAMSAFNAWVLLKGLE----TLAIRVQHSNASA 288 (414)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHH-------HCCCCCHHHHHHHHHHGG----GHHHHHHHHHHHH
T ss_pred eEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 99999999666545 699988865443 33221111 011222222222222222 3455667778888
Q ss_pred HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC------ChHHHHHHhC--CcEecccCccCCC
Q psy8850 267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI------EGESLLMAIK--DIAVSSGSACTSA 324 (397)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~l~--~i~~~~g~~~~~~ 324 (397)
+++.+.|++ .+.+..+..+. ...+.++.|.+++. ....+.+.++ ++.+..|..++..
T Consensus 289 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~ 367 (414)
T 3ndn_A 289 QRIAEFLNG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLV 367 (414)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEE
T ss_pred HHHHHHHhc-CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCcee
Confidence 999999988 77765443222 12356888888753 2456777777 6677777655431
Q ss_pred ----C----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 325 ----S----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 325 ----~----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
. ..+.......|+.+ +.||||++. |+++.+++.|++++
T Consensus 368 ~~p~~~~~~~~~~~~~~~~g~~~----~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 368 THPATTTHRAMGPEGRAAIGLGD----GVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp ECGGGTTTCTTHHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHH
T ss_pred eCccccccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHhh
Confidence 1 11223345566665 899999996 55666666666554
No 139
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.97 E-value=9.7e-30 Score=233.52 Aligned_cols=297 Identities=16% Similarity=0.118 Sum_probs=203.0
Q ss_pred HHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEEEeccCCCCC
Q psy8850 45 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL 123 (397)
Q Consensus 45 ~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~~~~~~ 123 (397)
++++.+++++|.+ +.++++||++|+.+++.++. ++|++|+++.++|+++...+.. +...|.+++.++.
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 5789999999987 44555666999999999876 7899999999999999877654 3345999999986
Q ss_pred CCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh-cCcEEEEecccccCccccccCcccccEEEecccc-ccC
Q psy8850 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYG 201 (397)
Q Consensus 124 ~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~-~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g 201 (397)
.|++++++++++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....+. ..+.|++++|+|| +.+
T Consensus 71 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~ 149 (331)
T 1pff_A 71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYING 149 (331)
T ss_dssp TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSS
T ss_pred CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCC
Confidence 38899999999999999999999999999999999999999 99999999999876543333 3579999999999 555
Q ss_pred CCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy8850 202 PKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES-- 276 (397)
Q Consensus 202 ~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 276 (397)
+.+ +|++++++ +..+.+.+...++ ..++.+....+++..+++.... +.++..++.+.+.+.+++.
T Consensus 150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~l~~~~~ 219 (331)
T 1pff_A 150 HTDVVAGLVCSRADIIAKVKSQGIKDI------TGAIISPHDAWLITRGTLTLDM----RVKRAAENAQKVAEFLHEHKA 219 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhh------cCCCCCHHHHHHHHcCcchHHH----HHHHHHHHHHHHHHHHHcCCC
Confidence 544 68999987 5555554443220 1123444444444345554332 2333444444444444430
Q ss_pred -----------cCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC---------ccCCC--CCChhhHH
Q psy8850 277 -----------IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS---------ACTSA--SLEPSYVL 332 (397)
Q Consensus 277 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~---------~~~~~--~~~~~~~~ 332 (397)
++++.+..++....++++.+.++ +..++...+. +|.+...+ +|... ...++..+
T Consensus 220 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~ 297 (331)
T 1pff_A 220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEER 297 (331)
T ss_dssp CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHH
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHH
Confidence 11221111111123567777765 4556666665 77654432 22110 01122334
Q ss_pred HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 333 ~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
...|+.. +.+|++++.+++++++++++++|+++
T Consensus 298 ~~~g~~~----~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 298 EAAGLTD----NLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HhcCCCC----CeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 4555543 89999999999999999999998754
No 140
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.6e-29 Score=238.94 Aligned_cols=329 Identities=13% Similarity=0.054 Sum_probs=223.1
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
|..+.+++.+.+....+.... .|.......+..+.+.+.+.+.. |. ++++|++|+|+++|+.+++.++. ++|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~----~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLG-SYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV----SGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC----CCC
T ss_pred CHHHHHHHHHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc----CCC
Confidence 566667777777653211111 22222222334444444444444 34 57789999999999999999887 565
Q ss_pred ----CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcC-----CceEEEEecccCccccccc-
Q psy8850 87 ----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQP- 154 (397)
Q Consensus 87 ----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~- 154 (397)
++|+++.|.|+++...+... |.+++.+++++ ++.+|+++|++++++ ++++|++++++||||.+++
T Consensus 178 d~~~d~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~ 254 (498)
T 3ihj_A 178 GKSRTGVMIPIPQYPLYSAVISEL---DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSR 254 (498)
T ss_dssp GGGSEEEEEEESCCTHHHHHHHHT---TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCH
T ss_pred CCCCCEEEEeCCCchhHHHHHHHc---CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCH
Confidence 49999999999999888877 99999999875 357899999999987 6899999999999999988
Q ss_pred --HHHHHHHHHhcCcEEEEecccccCcc-----ccccCcc----------c-ccEEEecccccc-CCCC--ceEEEE---
Q psy8850 155 --ILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNY----------K-VDLMSFSAHKIY-GPKG--IGALYI--- 210 (397)
Q Consensus 155 --l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~----------~-~d~~~~s~~K~~-g~~g--~g~~~~--- 210 (397)
+++|+++|++||++||+|++|+.... ..++..+ . ..+++.|+||.+ |..| +|++++
T Consensus 255 ~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~ 334 (498)
T 3ihj_A 255 KCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINL 334 (498)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESC
T ss_pred HHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecC
Confidence 56799999999999999999984322 1111111 1 136788999944 5334 688875
Q ss_pred ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850 211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEI 280 (397)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (397)
+++....+..... ...+++.....++.++++ .+.....++.+++.++++++.+.|++ ++++
T Consensus 335 ~~~l~~~l~~~~~--------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~ 405 (498)
T 3ihj_A 335 HPEIKGQLVKLLS--------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VPGI 405 (498)
T ss_dssp CHHHHHHHHHHHH--------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTE
T ss_pred CHHHHHHHHHHHh--------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 3333333322211 112445555566655553 23334567788999999999999999 8898
Q ss_pred EEeCCCCCCCCceEEEEec------------CCChHHH--HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCc
Q psy8850 281 YINGDMNNRIPHNLNISFN------------FIEGESL--LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHS 344 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 344 (397)
.+..+.+ +..+++.+. +.+..++ ...|. ||.+.+|..|... .+..
T Consensus 406 ~~~~p~g---g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~----------------~~~~ 466 (498)
T 3ihj_A 406 HCNPLQG---AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR----------------EGTY 466 (498)
T ss_dssp ECCCCCB---SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC----------------TTCC
T ss_pred EecCCCe---EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCC
Confidence 8765543 223333332 2333443 33343 9999999877630 1236
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 345 SIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 345 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
++|+++. .+++++++++++|.++++++++.
T Consensus 467 ~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 467 HFRMTIL--PPVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp BEEEECC--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999996 68999999999999999888763
No 141
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.97 E-value=5.7e-29 Score=232.36 Aligned_cols=304 Identities=16% Similarity=0.227 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---cC
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR 85 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~~ 85 (397)
+++.+.+++.+.+... .++.. .|. .....++++.+++++|++ +++++++|+++|+.+++.++ +.+. ++
T Consensus 45 ~~~~v~~a~~~~~~~~-~~~~~-~y~-----~~~~~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~-~~~~~~~~~ 115 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL-LHVSN-LYE-----NPWQEELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLA-RKYWRDKGK 115 (375)
T ss_dssp SCHHHHHHHHHHHHHC-SCCCT-TBC-----CHHHHHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHH-HHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhc-cccCc-ccC-----CHHHHHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHH-HHHhccCCC
Confidence 7899999999998763 23322 221 235678999999999984 78999999999999998853 2222 45
Q ss_pred C-CEEEEcCCCChhhHHHHHHHhhC-----CcE-----EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850 86 G-KHIITVQTEHKSVLDSIRKLEND-----GFR-----VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 86 g-~~vl~~~~~~~s~~~~~~~~~~~-----g~~-----v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
| ++|++.+++|+++...+..+... |.. +..++. +|+++|++++++++++|++++++||||.+.|
T Consensus 116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~ 190 (375)
T 2eh6_A 116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETAGIIIEVIQGEGGVNEA 190 (375)
T ss_dssp CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEEEEEECSEETTTTSEEC
T ss_pred CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCCeEEEEEeCccCCCCCcCC
Confidence 6 99999999988877665544211 111 444443 4899999999999999999999999999988
Q ss_pred ----HHHHHHHHHhcCcEEEEecccc-cCccc--cccCccc--ccEEEecccc-ccCCCCceEEEEecCCCCcccccccc
Q psy8850 155 ----ILEIGELCRSKGVIFHCDAAQA-VGKID--INIQNYK--VDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG 224 (397)
Q Consensus 155 ----l~~i~~l~~~~gi~livD~a~~-~~~~~--~~~~~~~--~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~ 224 (397)
+++|.++|++||+++|+|++|+ ++... .++..++ +|++++| | +.++.++|+++++++..+.+.....+
T Consensus 191 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~~ 268 (375)
T 2eh6_A 191 SEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSHG 268 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSCC
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCCC
Confidence 9999999999999999999998 54322 2233334 7888655 9 55556789999987655555442111
Q ss_pred CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (397)
...+++ .....+..++++... ++.++++++++++.+.|++ ++...+.+. +.++++.++. +..
T Consensus 269 ------~~~~~~-~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-----g~~~~~~~~~-~~~ 330 (375)
T 2eh6_A 269 ------STFGGN-PLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKE-LGKGKVKGR-----GLMLGLELER-ECK 330 (375)
T ss_dssp ------CSSTTC-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTSSEEEEE-----TTEEEEECSS-CCH
T ss_pred ------CCCCCC-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhcCCceEE-----EEEEEEEEcC-cHH
Confidence 112333 333333345666543 6778888999999999988 654222221 4566777764 456
Q ss_pred HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
++.+.|. ||.+.++. .+++||+++..++++++++++++|+++
T Consensus 331 ~~~~~l~~~gi~~~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 331 DYVLKALEKGLLINCTA-----------------------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6776665 77776541 278999999888999999999999875
No 142
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.97 E-value=5.5e-29 Score=234.41 Aligned_cols=331 Identities=15% Similarity=0.090 Sum_probs=229.1
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCE
Q psy8850 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKH 88 (397)
Q Consensus 10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~ 88 (397)
++.+++++.+.+... .+.. .+...++++.++++++.+ ++++++||++|+..++.++ . ++|++
T Consensus 43 ~~~v~~a~~~~~~~~-------~y~~----~~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~----~~gd~ 105 (399)
T 2oga_A 43 RAETDAAIARVLDSG-------RYLL----GPELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGI----GPGDE 105 (399)
T ss_dssp HHHHHHHHHHHHHHT-------CCSS----SHHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTC----CTTCE
T ss_pred CHHHHHHHHHHHhcC-------CCCC----chhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCC----CCcCE
Confidence 478889988887641 1211 246788999999999987 6888899999999999988 5 78999
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi 167 (397)
|+++.++|+++...+... |.+++.+|.++ ++.+|++++++++++++++|+ ++||||.+.|+++|.++|+++|+
T Consensus 106 vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~ 179 (399)
T 2oga_A 106 VIVPSHTYIASWLAVSAT---GATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGL 179 (399)
T ss_dssp EEEESSSCTHHHHHHHHT---TCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTC
T ss_pred EEECCCccHHHHHHHHHC---CCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCC
Confidence 999999999988877665 99999999986 578999999999998888887 45789999999999999999999
Q ss_pred EEEEecccccCccccccCccc--ccEEEecc--ccccCCC-CceEEEEe-cCCCCccccccccCCcccccc------CCC
Q psy8850 168 IFHCDAAQAVGKIDINIQNYK--VDLMSFSA--HKIYGPK-GIGALYIR-RNPRTRIEAQIHGGGHEYGLR------SGT 235 (397)
Q Consensus 168 ~livD~a~~~~~~~~~~~~~~--~d~~~~s~--~K~~g~~-g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~ 235 (397)
++|+|++|+.+... +...++ .|++++|+ +|++|+. .+|+++.+ ++..+.+......+.. ..+. ...
T Consensus 180 ~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~g~~~~ 257 (399)
T 2oga_A 180 HIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR-QKYSHETKGTNSR 257 (399)
T ss_dssp EECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS-STTCCCSCCCBCC
T ss_pred EEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc-ccccccccccCCC
Confidence 99999999977532 222223 69999999 5966653 35777775 4444444333222110 0010 012
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DI 313 (397)
Q Consensus 236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i 313 (397)
.+....++..++++.+ +.+.++..++++++.+.|++ ++++.+...+......++.+.+...+..++.+.|. ||
T Consensus 258 ~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI 332 (399)
T 2oga_A 258 LDEMQAAVLRIRLAHL----DSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGI 332 (399)
T ss_dssp CCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTB
T ss_pred cCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCC
Confidence 3444444444555443 44566777888899999988 77766543332222222234443345677877776 88
Q ss_pred EecccCccCCCCCChhhHHHhhCCCcc-------ccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 314 AVSSGSACTSASLEPSYVLRALGCNDE-------LAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~-------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.+.++.. .+ ......++.+|.... ...+.|||+++..++++|+++++++|+++++++
T Consensus 333 ~v~~~~~-~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 333 DTLTHYP-VP--VHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCBCSCS-SC--GGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred ceecCCC-Cc--cccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8876421 11 001123333333211 013789999999999999999999999988654
No 143
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.97 E-value=4.6e-29 Score=234.92 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=210.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (397)
Q Consensus 33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~ 111 (397)
+.++....+...++++.+++++|.+ ++++++||++|+.+++.++. ++||+|+++.+.|+++...+.. +...|.
T Consensus 54 ~~Y~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~ 127 (404)
T 1e5e_A 54 YIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGI 127 (404)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred ccccCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 3333334466789999999999986 67888888999999999887 7899999999999999885442 334499
Q ss_pred EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh-cCcEEEEecccccCccccccCccccc
Q psy8850 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVD 190 (397)
Q Consensus 112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~-~gi~livD~a~~~~~~~~~~~~~~~d 190 (397)
+++.+|.+ |++++++++++++++|++++++||||.+.|+++|+++|++ +|+++|+|++|+.+.....+ .++.|
T Consensus 128 ~~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~d 201 (404)
T 1e5e_A 128 QVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVD 201 (404)
T ss_dssp EEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCS
T ss_pred EEEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCE
Confidence 99999876 7899999999999999999999999999999999999999 99999999999976532112 34799
Q ss_pred EEEeccccc-cCCCC--ceEEEEecCCCC-ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 191 LMSFSAHKI-YGPKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 191 ~~~~s~~K~-~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
+++.|+||. .++.+ +|+++++++... .+.....++ ..+..+....++...+++. ++.+.++..++.
T Consensus 202 i~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~------~g~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~ 271 (404)
T 1e5e_A 202 VVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI------TGSVISPHDAWLITRGLST----LNIRMKAESENA 271 (404)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred EEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHhHhH----HHHHHHHHHHHH
Confidence 999999994 44544 499999876555 444332211 0122343444444455543 234455666777
Q ss_pred HHHHHHHhhhcCcEE-EeCCC-------------CCCCCceEEEEecCCChHHHHHHhC--CcEecccCc----------
Q psy8850 267 KRLYNGLMESIEEIY-INGDM-------------NNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSA---------- 320 (397)
Q Consensus 267 ~~l~~~l~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~---------- 320 (397)
+.+.+.+++ .+.+. +..+. ....++++.+.+++. .......+. ++ +.+|..
T Consensus 272 ~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~ 348 (404)
T 1e5e_A 272 MKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKL-ITLAVSLGGCESLIQH 348 (404)
T ss_dssp HHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSS-SEESSCCCSSSCEEEC
T ss_pred HHHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhCCC-ceeccCCCCcceeeec
Confidence 777777777 44432 11111 011256666676542 223333343 66 333321
Q ss_pred cCCC--CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 321 CTSA--SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 321 ~~~~--~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
|... ...++......|+. .++|||+++. ++++++++.|+++++.+-
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~----~~~iRis~g~----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 349 PASMTHAVVPKEEREAAGIT----DGMIRLSVGI----EDADELIADFKQGLDALL 396 (404)
T ss_dssp GGGTTTTTSCHHHHHHTTCC----TTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHhcCCC----CCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 1110 00112233344443 3899999996 889999999999887553
No 144
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.97 E-value=3.3e-29 Score=230.37 Aligned_cols=299 Identities=15% Similarity=0.099 Sum_probs=221.3
Q ss_pred CCCCC-CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChhHHHHHHHHH
Q psy8850 2 DYSAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKG 77 (397)
Q Consensus 2 ~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~i~~~~g~t~a~~~~l~~ 77 (397)
+++.. .++|+.+++++.+.+.... .. .|.. ....++++.++++++ +++++|++++|+++|+.+++.+
T Consensus 25 ~~~~~~~~~~~~v~~a~~~~~~~~~---~~-~y~~-----~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 25 ALNENPFPFPEDLVDEVFRRLNSDA---LR-IYYD-----SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp SSCCCSSCCCHHHHHHHHHTCCGGG---GG-SCCC-----SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhhh---hh-cCCC-----CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 44444 3578999999998773211 00 1111 136789999999999 8888999999999999999987
Q ss_pred hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (397)
Q Consensus 78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~ 157 (397)
+ ||+|++. ++|+++...+... |.+++.+|.++++.+|++++ +++++|++++|+||||.++|.++
T Consensus 96 ~-------gd~Vl~~-p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~ 159 (335)
T 1uu1_A 96 F-------DRSVFFP-PTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREE 159 (335)
T ss_dssp S-------SEEEECS-SSCHHHHHHHHHH---TCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred h-------CCcEEEC-CCcHHHHHHHHHc---CCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHH
Confidence 6 6899999 9999998877766 99999999887767888877 57899999999999999999999
Q ss_pred HHHHHHhcCcEEEEecccccCcc--ccc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccccc
Q psy8850 158 IGELCRSKGVIFHCDAAQAVGKI--DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (397)
Q Consensus 158 i~~l~~~~gi~livD~a~~~~~~--~~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (397)
+.++++..| ++|+|++|+.... ..+ +...+.++++.|++|.+|+.| +|+++++++..+.+.....
T Consensus 160 l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--------- 229 (335)
T 1uu1_A 160 IERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL--------- 229 (335)
T ss_dssp HHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC---------
T ss_pred HHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC---------
Confidence 999999889 9999999983211 122 223356899999999777555 7999998665444433221
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK- 311 (397)
Q Consensus 233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 311 (397)
..+.+.....++.++++. .+++++..+++.++++++.+.|++ + ++.+. +.. +.++++.++..+..++.+.|.
T Consensus 230 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~ 302 (335)
T 1uu1_A 230 PFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRIT-DSR---GNFVFVFMEKEEKERLLEHLRT 302 (335)
T ss_dssp TTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCC---SSEEEEECCTHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEc-CCC---CeEEEEECCCCCHHHHHHHHHH
Confidence 124566666666677765 345778889999999999999998 5 55443 222 345667766434556766665
Q ss_pred -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
||.+.++ .+++||+++ +.+++++++++|+++
T Consensus 303 ~gi~v~~~------------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 303 KNVAVRSF------------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HTEEEEEE------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred CCEEEEEC------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 8888752 278999996 468899999998754
No 145
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.97 E-value=5.9e-29 Score=233.77 Aligned_cols=329 Identities=14% Similarity=0.155 Sum_probs=231.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCC
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGK 87 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~ 87 (397)
.++++++++.+.+...+.. ..+ +...++++.++++++. +++++++|+++|+.+++.++ . ++|+
T Consensus 10 ~~~~v~~a~~~~~~~~~~~------~~g----~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~----~~gd 73 (394)
T 1o69_A 10 MGGNELKYIEEVFKSNYIA------PLG----EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGV----KQDD 73 (394)
T ss_dssp --CCHHHHHHHHHHHTTTS------CTT----HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTC----CTTC
T ss_pred CCHHHHHHHHHHHHcCCcc------CCC----hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC----CCCC
Confidence 4678899998888652211 111 3578899999999997 48999999999999999998 5 7899
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS 164 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~ 164 (397)
+|+++.++|+++...+... |.+++.++.++++.+|++++++++++ ++++|++++ |+|...++++|.++|++
T Consensus 74 ~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~ 147 (394)
T 1o69_A 74 IVLASSFTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKE 147 (394)
T ss_dssp EEEEESSSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHc---CCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHH
Confidence 9999999999999888776 99999999988888999999999987 789999886 79999999999999999
Q ss_pred cCcEEEEecccccCccccccC--c-ccccEEEeccccccCCCCceEEEEe-cCCCCccccccccCC--------cccccc
Q psy8850 165 KGVIFHCDAAQAVGKIDINIQ--N-YKVDLMSFSAHKIYGPKGIGALYIR-RNPRTRIEAQIHGGG--------HEYGLR 232 (397)
Q Consensus 165 ~gi~livD~a~~~~~~~~~~~--~-~~~d~~~~s~~K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~--------~~~~~~ 232 (397)
+|+++|+|++|+.|....+.. . .++|+.++|.+|.+++.++|+++++ ++..+.+......+. ...+++
T Consensus 148 ~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~ 227 (394)
T 1o69_A 148 NDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN 227 (394)
T ss_dssp TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred cCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence 999999999999665432211 1 2578888888996666678999996 454444433211110 112233
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecC----------
Q psy8850 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF---------- 300 (397)
Q Consensus 233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------- 300 (397)
.++++....+++.. ++ .+++..++.+++++++.+.|.+ + +.+..+... ...+++.+.++.
T Consensus 228 ~~~~~~~aa~~l~~-l~----~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 299 (394)
T 1o69_A 228 YRLSNVLGAIGVAQ-ME----VLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQK 299 (394)
T ss_dssp CBCCHHHHHHHHHH-HT----THHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCE
T ss_pred cCcCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhccccccc
Confidence 44555555555432 33 3455778889999999999988 4 555543221 112345677652
Q ss_pred ------------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhh---C--CCccccCceEEEeeCCCCCHHHHHH
Q psy8850 301 ------------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRAL---G--CNDELAHSSIRFTIGRFTTEKEIDF 361 (397)
Q Consensus 301 ------------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~---g--~~~~~~~~~iRi~~~~~~~~~~i~~ 361 (397)
.+..++.+.|. ||.++++..+.. .. ..++.. + .........+|+.+..++|++|+++
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~--~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~ 375 (394)
T 1o69_A 300 DINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMH--TQ--EVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE 375 (394)
T ss_dssp EEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGG--GC--GGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred cccccccccccccCHHHHHHHHHHcCCcccccCCccc--cc--hhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHH
Confidence 24567777776 899988854321 00 011111 0 0111122567777788899999999
Q ss_pred HHHHHHHHHH
Q psy8850 362 TIKLLKMKVK 371 (397)
Q Consensus 362 ~~~~l~~~~~ 371 (397)
++++|+++++
T Consensus 376 ~~~~l~~~~~ 385 (394)
T 1o69_A 376 ISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 146
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.97 E-value=2.3e-28 Score=229.72 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=223.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh------
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY------ 82 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~------ 82 (397)
.+|.+.+++.+.+..... ... . ...+...++++++++++| .+++++++||++|+++++..+....
T Consensus 53 ~~p~v~~a~~~~~~~~~~-~~~-~-----~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~ 123 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTL-TSR-A-----FHSDQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKV 123 (392)
T ss_dssp TCHHHHHHHHHHHTTCSC-CCT-T-----SEETTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhccc-ccc-c-----cCCHHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence 589999999998876321 111 1 123457889999999998 4589999999999999999765320
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhC-C---------cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLEND-G---------FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~-g---------~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
..++++|++..++|++.......+... + ..+..++.+ |+++|++++++++++|++++++||||.+
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG~~ 198 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPNTAAFILEPIQGEAGIN 198 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTTEEEEEECSSBSTTTSB
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhccCeEEEEEeCccCCCCCc
Confidence 013679999999998776665544211 1 124445543 8999999999999999999999999999
Q ss_pred cc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCccccc
Q psy8850 153 QP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEAQ 221 (397)
Q Consensus 153 ~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~ 221 (397)
.| +++|.++|++||+++|+|++|+ ++. ...+.....+|++++| | +.|+ ..+|+++++++..+.+...
T Consensus 199 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~~~~~~~~~~ 276 (392)
T 3ruy_A 199 IPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANRDILGVFEPG 276 (392)
T ss_dssp CCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECHHHHTTCCTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECHHHHhhhccC
Confidence 98 9999999999999999999996 322 1222223356887665 9 5552 3479999987665555443
Q ss_pred cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEec
Q psy8850 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFN 299 (397)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
..+. ..+.+...+.+..++++.... +++.+++.++++++.+.|++ + +.+...... +.++.+.++
T Consensus 277 ~~~~-------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~----g~~~~~~~~ 342 (392)
T 3ruy_A 277 SHGS-------TFGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKE-IDNPMITEVRGK----GLFIGIELN 342 (392)
T ss_dssp SSCC-------SSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-CCCTTEEEEEEE----TTEEEEEES
T ss_pred CcCC-------CCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-hcCCCceEEEee----eeEEEEEEc
Confidence 2221 124566667777778876654 67888999999999999988 5 334433221 456666676
Q ss_pred CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
. +..++.+.|. ||.+.++. .+++|++++..++++++++++++|++++
T Consensus 343 ~-~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 343 E-PARPYCEQLKAAGLLCKETH-----------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp S-CSHHHHHHHHTTTEECCCBT-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHCCcEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5 6677877775 88887652 2889999998899999999999999875
No 147
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.97 E-value=2.1e-29 Score=238.70 Aligned_cols=336 Identities=17% Similarity=0.200 Sum_probs=230.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++..++++.+++++.+.+...+ +++.+..+.......+....+++.+++++++++++|++++| ++|+.+++.++.
T Consensus 32 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~~~~~~~-- 108 (417)
T 3n0l_A 32 ASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQGVYAALI-- 108 (417)
T ss_dssp TTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHS--
T ss_pred cccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHHHHHHhc--
Confidence 4556779999999998885433 33433122222233345556888999999998766777655 899999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHh--hCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHH
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLE--NDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~--~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
++||+|+++.++|+++........ ..+..++.++.+.++.+|+++|+++++ +++++|++++++| |.+.|+++|
T Consensus 109 --~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i 184 (417)
T 3n0l_A 109 --NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKF 184 (417)
T ss_dssp --CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHH
T ss_pred --CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHH
Confidence 899999999999988765322221 125667777787778899999999998 6899998877664 899999999
Q ss_pred HHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEecccc-ccCCCCceEEEEe-cCCCCccccccccCCccccc
Q psy8850 159 GELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL 231 (397)
Q Consensus 159 ~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (397)
.++|++||+++|+|++|+.+.. +..+. ..|++++|+|| +.|+.| |+++++ ++....+...... .
T Consensus 185 ~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~------~ 255 (417)
T 3n0l_A 185 REIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFP------G 255 (417)
T ss_dssp HHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTT------T
T ss_pred HHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCC------c
Confidence 9999999999999999865443 22222 47999999999 666664 999888 3444444333221 1
Q ss_pred cCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHHH
Q psy8850 232 RSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM 308 (397)
Q Consensus 232 ~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 308 (397)
..++++...++++.+++... .+++.++.+++.++++++.+.|.+ .++.+.... ...+++++.+.. .+...+..
T Consensus 256 ~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 331 (417)
T 3n0l_A 256 IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDG--TDNHLVLMSFLDREFSGKDADL 331 (417)
T ss_dssp TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS--CSSSEEEEECTTSSSCHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCC--CCceEEEEEcccCCCCHHHHHH
Confidence 13456667777777777764 356788899999999999999998 577766521 124466666642 35667776
Q ss_pred HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHH
Q psy8850 309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~ 372 (397)
.|. ||.+.++..... .......+.+|+++... .++++|++++++|.+++++
T Consensus 332 ~l~~~gi~v~~~~~~~~-------------~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 332 ALGNAGITANKNTVPGE-------------IRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHTTEECEECCCTTC-------------CSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCeEEeccccCCC-------------CcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 665 888876532211 01122346799987532 5689999999999988754
No 148
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.97 E-value=6.8e-29 Score=236.71 Aligned_cols=337 Identities=13% Similarity=0.165 Sum_probs=223.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHH
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKG 77 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~ 77 (397)
+|..+++++|++++...+...+ ++|.+ .+..+.... .....+++.+++++|++.+. .++++|||+|+..++.+
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 5677889999999999887655 67766 444433322 34446779999999998653 45667999999999999
Q ss_pred hHhhhccCCCEEEEcCCCChhhHHHHH-----HHhhCCc--EEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCc
Q psy8850 78 AAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDGF--RVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNE 148 (397)
Q Consensus 78 l~~~~~~~g~~vl~~~~~~~s~~~~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~ 148 (397)
++ ++||+|+++++.|.++..... .....|. +++.++++ +++.+|++++++++.+ ++++|++..++||
T Consensus 140 l~----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~ 215 (490)
T 2a7v_A 140 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA 215 (490)
T ss_dssp HC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred Hc----CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC
Confidence 88 899999999998876542111 1111143 44455555 5789999999999864 7899988777765
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEecccc-ccCCCCceEEEEecCCC-------
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPR------- 215 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~------- 215 (397)
...|+++|.++|++||+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |+++++++..
T Consensus 216 --~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~ 290 (490)
T 2a7v_A 216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp --SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred --CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccccccc
Confidence 567999999999999999999999875432 22222 68999999999 778876 9999987521
Q ss_pred --------CccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850 216 --------TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 286 (397)
Q Consensus 216 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 286 (397)
..+....+. ...++++...++++.++++... .+++++.+++.+++++|.+.|.+ .|+.+....
T Consensus 291 ~~~~~~l~~~i~~~~~~------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--~G~~v~~~~ 362 (490)
T 2a7v_A 291 REIPYTFEDRINFAVFP------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGG 362 (490)
T ss_dssp EEEECCCHHHHHHHHTT------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS
T ss_pred chhhHHHHHHHHHHhcc------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--cCcEEecCC
Confidence 111111111 1235677888888888887765 35688899999999999999999 588876531
Q ss_pred CCCCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHH
Q psy8850 287 NNRIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKE 358 (397)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~ 358 (397)
...+++++.+. +.+..++.+.|. ||.+..+..+.. ..+...+.|||+... ..+++|
T Consensus 363 --t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d--------------~~p~~~~~iRig~~a~t~~g~~~~d 426 (490)
T 2a7v_A 363 --TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFREDD 426 (490)
T ss_dssp --CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred --CCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCC--------------CCCCCCCceEecccccccCCCCHHH
Confidence 12466677765 346677777776 888876532211 011224779997643 368999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKVKKLR 374 (397)
Q Consensus 359 i~~~~~~l~~~~~~~~ 374 (397)
++++++.|.+++....
T Consensus 427 ~~~~~~~i~~~l~~~~ 442 (490)
T 2a7v_A 427 FRRVVDFIDEGVNIGL 442 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987543
No 149
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.97 E-value=1.2e-29 Score=240.51 Aligned_cols=316 Identities=13% Similarity=0.081 Sum_probs=215.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChhHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATESNNL 73 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~--~i~~~~g~t~a~~~ 73 (397)
|..+.+++++.|++++.+.+.... .. .|.. .....++++.+++++.. +++ +|++|+|+++|+.+
T Consensus 61 d~~~~~~~~~~v~~a~~~~~~~~~---~~-~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~ 132 (420)
T 4f4e_A 61 NEDGKIPLLRAVRDAEKARVEAGL---PR-GYLP----IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKI 132 (420)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHTCC---CC-CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHHHhccCC---CC-CCCC----CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHH
Confidence 455666777999999999887511 00 1211 22356677777777643 456 89999999999999
Q ss_pred HHH--HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--CCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850 74 AIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVMLVN 146 (397)
Q Consensus 74 ~l~--~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~ 146 (397)
+++ ++. ++||+|++++|+|+++...+... |.+++.+|. ++++.+|+++++++++ ++++++++++++
T Consensus 133 ~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~ 205 (420)
T 4f4e_A 133 GADFLRTL----NPKAKVAISDPSWENHRALFDMA---GFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCH 205 (420)
T ss_dssp HHHHHHHH----CTTCCEEEEESCCHHHHHHHHHT---TCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred HHHHHHHh----CCCCEEEEeCCCcHhHHHHHHHc---CCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 954 445 78999999999999998887777 999999998 3567899999999998 678999999999
Q ss_pred Cccccccc---HHHHHHHHHhcCcEEEEecccccCccc-----cc---c-CcccccEEEeccccccCCCC--ceEEEEec
Q psy8850 147 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----IN---I-QNYKVDLMSFSAHKIYGPKG--IGALYIRR 212 (397)
Q Consensus 147 ~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~-----~~---~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~ 212 (397)
||||.+++ +++|+++|++||+++|+|++|+..... .. + ...+.++++.|++|.+|+.| +|++++..
T Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~ 285 (420)
T 4f4e_A 206 NPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIIT 285 (420)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEc
Confidence 99999987 568889999999999999998733221 11 1 12256788999999777656 78877532
Q ss_pred C---CCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc---CcE
Q psy8850 213 N---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESI---EEI 280 (397)
Q Consensus 213 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~ 280 (397)
. ....+...... ..+.....++.....+...+++. +.++++++.++++++++++.+.|++ + +++
T Consensus 286 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~ 361 (420)
T 4f4e_A 286 DSKDEAARVLSQLKR---VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKA-AGIERDF 361 (420)
T ss_dssp SSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCC
T ss_pred CCHHHHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Confidence 1 11111111100 00011123333444444344432 2345788899999999999999998 4 244
Q ss_pred EEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 281 YINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
.+..+.. +.+++ .+.+...+...+. ||.+.++ .|++++. .++++
T Consensus 362 ~~~~~~~---g~~~~---~~~~~~~~~~~l~~~gI~v~~~---------------------------~Ris~~~-~~~~~ 407 (420)
T 4f4e_A 362 SFINAQR---GMFSY---SGLTSAQVDRLREEFGIYAVST---------------------------GRICVAA-LNTRN 407 (420)
T ss_dssp THHHHSC---SSEEE---CCCCHHHHHHHHHHHCEECCTT---------------------------SEEEGGG-CCTTT
T ss_pred eeECCCc---cEEEE---eCCCHHHHHHHHHhCCEEecCC---------------------------CeEEEec-CCHHH
Confidence 4443322 22222 2344555555554 7877653 2999975 46778
Q ss_pred HHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKV 370 (397)
Q Consensus 359 i~~~~~~l~~~~ 370 (397)
+++++++|++++
T Consensus 408 i~~~~~~l~~~l 419 (420)
T 4f4e_A 408 LDVVANAIAAVL 419 (420)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 150
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.97 E-value=6.2e-30 Score=240.77 Aligned_cols=318 Identities=12% Similarity=0.045 Sum_probs=216.2
Q ss_pred CCCCCCCCCHHHHHHHHH-HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChhHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIP-YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATESNN 72 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~--~i~~~~g~t~a~~ 72 (397)
|..+.+++++.+++++.+ .+.... . . .|. ......++++.++++++. +++ +|++|+|+++|+.
T Consensus 38 d~~~~~~~~~~v~~a~~~~~~~~~~-~--~-~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~ 109 (397)
T 3fsl_A 38 NEDGIIPQLQAVAEAEARLNAQPHG-A--S-LYL----PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALK 109 (397)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHSCCC-C--C-CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHhhccCccc-c--c-cCC----CCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHH
Confidence 556667777999999999 776411 0 0 111 112356778888888753 567 8999999999999
Q ss_pred HHHH--HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--CCCCCCCHHHHHHHhc---CCceEEEEecc
Q psy8850 73 LAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVMLV 145 (397)
Q Consensus 73 ~~l~--~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~ 145 (397)
++++ ++. ++||+|+++.++|+++...+... |.+++.+|. ++++.+|+++++++++ +++++++++++
T Consensus 110 ~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p 182 (397)
T 3fsl_A 110 VGADFLKRY----FPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCC 182 (397)
T ss_dssp HHHHHHHHH----CTTCCEEEESSCCHHHHHHHHHT---TCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSS
T ss_pred HHHHHHHhc----CCCCeEEEeCCCchhHHHHHHHc---CCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCC
Confidence 9954 344 78999999999999998887776 999999998 4567899999999998 57889999999
Q ss_pred cCcccccccH---HHHHHHHHhcCcEEEEecccccCccc-----cc---c-CcccccEEEeccccccCCCC--ceEEEEe
Q psy8850 146 NNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKID-----IN---I-QNYKVDLMSFSAHKIYGPKG--IGALYIR 211 (397)
Q Consensus 146 ~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~~-----~~---~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~ 211 (397)
+||||.+++. ++|+++|++||+++|+|++|+..... .. + ...+.++++.|++|.+|+.| +|++++.
T Consensus 183 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~ 262 (397)
T 3fsl_A 183 HNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM 262 (397)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence 9999999874 58899999999999999998743321 11 1 12256688999999777556 6888764
Q ss_pred cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEE
Q psy8850 212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESIE---EIYI 282 (397)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~ 282 (397)
......+...........+...+.++.....++.++++. +.++++++.+++.++++++.+.|++ ++ ++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~ 341 (397)
T 3fsl_A 263 CEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST-EMPERNFDY 341 (397)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSCCTH
T ss_pred cCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcee
Confidence 222111111100000000011223343444444344432 2446788899999999999999998 43 4444
Q ss_pred eCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850 283 NGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360 (397)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~ 360 (397)
..+.. +.++++ +.+...+...+. ||.+.+| + ||+++. .++++|+
T Consensus 342 ~~~~~---~~~~~~---~~~~~~~~~~l~~~gi~v~~g-------------------------~--Ris~~~-~~~~~i~ 387 (397)
T 3fsl_A 342 LLNQR---GMFSYT---GLSAAQVDRLREEFGVYLIAS-------------------------G--RMCVAG-LNTANVQ 387 (397)
T ss_dssp HHHCC---SSEEEC---CCCHHHHHHHHHTTCEECCTT-------------------------C--EEEGGG-CCTTTHH
T ss_pred ecCCc---eEEEec---CCCHHHHHHHHHhCCEEECCC-------------------------C--eEEEEe-cCHhhHH
Confidence 33322 223232 234555555554 8888765 2 999975 3567899
Q ss_pred HHHHHHHHH
Q psy8850 361 FTIKLLKMK 369 (397)
Q Consensus 361 ~~~~~l~~~ 369 (397)
+++++|+++
T Consensus 388 ~~~~~l~~~ 396 (397)
T 3fsl_A 388 RVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999875
No 151
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.97 E-value=1.6e-28 Score=232.64 Aligned_cols=344 Identities=12% Similarity=0.082 Sum_probs=231.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRG 86 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g 86 (397)
++++++++++.+.+... +..+ +.......+...++++.+++++|.+ ++++++|||+|+.+++.++ . ++|
T Consensus 13 ~~~~~~~~a~~~~~~~~--~~~~--~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~----~~g 82 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSN--RWAI--SGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI----GEG 82 (418)
T ss_dssp CCCHHHHHHHHHHHHHT--CCST--TSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred CCCHHHHHHHHHHHhcC--Cccc--cCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCc
Confidence 45799999999998762 1111 1111112345788999999999987 5778888999999999988 5 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~ 165 (397)
|+|+++.++|+++...+... |.+++.++.++ ++.+|++++++++++++++|+++ ||+|...++++|.++|++|
T Consensus 83 d~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~ 156 (418)
T 2c81_A 83 DEVIVPSLTWIATATAVLNV---NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEH 156 (418)
T ss_dssp CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHT
T ss_pred CEEEECCCccHhHHHHHHHc---CCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHC
Confidence 99999999999999887766 99999999985 77899999999999999988865 4799999999999999999
Q ss_pred CcEEEEecccccCcc-cc-ccCcccccEEEecc--ccccCCCCceEEEEe-cCCCCccccccccCCccc--------ccc
Q psy8850 166 GVIFHCDAAQAVGKI-DI-NIQNYKVDLMSFSA--HKIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------GLR 232 (397)
Q Consensus 166 gi~livD~a~~~~~~-~~-~~~~~~~d~~~~s~--~K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~--------~~~ 232 (397)
|++||+|++|+.+.. .. ....+ .|++++|+ ||.+|+..+|+++.+ ++..+.+......+.... .+.
T Consensus 157 ~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (418)
T 2c81_A 157 NLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDM 235 (418)
T ss_dssp TCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCB
T ss_pred CCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccchh
Confidence 999999999997753 11 11111 24566655 996565346888875 344444433222211100 011
Q ss_pred --CCCCchhH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC---CCCceEEEEec---
Q psy8850 233 --SGTLATHQ----IVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFN--- 299 (397)
Q Consensus 233 --~~~~~~~~----~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~--- 299 (397)
.++....+ +-.+.+++.. ..++++++.++..++++++.+.|.+ ++++.+..++.. ...+++.+.++
T Consensus 236 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (418)
T 2c81_A 236 QLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDPVK 314 (418)
T ss_dssp SEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECGGG
T ss_pred hccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEcccc
Confidence 10011100 0111122221 1234677788888889999999988 888888744332 22345557776
Q ss_pred --CCChHHHHHHhC---CcE---ecccCccCCCCCChhhHHHhhCC---------------------CccccCceEEEee
Q psy8850 300 --FIEGESLLMAIK---DIA---VSSGSACTSASLEPSYVLRALGC---------------------NDELAHSSIRFTI 350 (397)
Q Consensus 300 --~~~~~~~~~~l~---~i~---~~~g~~~~~~~~~~~~~~~~~g~---------------------~~~~~~~~iRi~~ 350 (397)
+.+..++.+.|. ||. +.++..+.. ..+. +...+. ......+.|||++
T Consensus 315 ~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~ 390 (418)
T 2c81_A 315 FGGLNADQFCEILREKLNMGTFYLHPPYLPVH--KNPL--FCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHH 390 (418)
T ss_dssp TTTCCHHHHHHHHHHHHTCCTTTEECCCCCGG--GCTT--CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEG
T ss_pred ccccCHHHHHHHHHHcCCCCcccccccccccc--cCch--hcccccccccccccccccccccCCChHHHHHHhCEEEecC
Confidence 456778888775 788 777652210 0000 000000 0011236899999
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHH
Q psy8850 351 GRFT-TEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 351 ~~~~-~~~~i~~~~~~l~~~~~~~ 373 (397)
+..+ |++||++++++|+++++++
T Consensus 391 ~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 391 AILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred CccCCCHHHHHHHHHHHHHHHHhh
Confidence 9999 9999999999999987654
No 152
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.97 E-value=7.3e-29 Score=232.98 Aligned_cols=329 Identities=15% Similarity=0.103 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRG 86 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g 86 (397)
..++++++++.+.+.... +. ...+...++++.++++++.+ ++++++|||+|+.+++.++ . ++|
T Consensus 33 ~~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~----~~g 96 (391)
T 3dr4_A 33 RLDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGI----GPG 96 (391)
T ss_dssp CCCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTC----CTT
T ss_pred CCCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCc
Confidence 456889999988886521 11 01246789999999999987 7899999999999999988 5 789
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~ 165 (397)
++|+++.++|+++...+... |.+++.++.+ +++.+|++++++++++++++|++ +||||.+.|+++|.++|++|
T Consensus 97 d~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~~~~~~i~~l~~~~ 170 (391)
T 3dr4_A 97 DEVIVPSLTYIASANSVTYC---GATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQICDMDPILEVARRH 170 (391)
T ss_dssp CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCCCCHHHHHHHHHHT
T ss_pred CEEEECCCchHHHHHHHHHC---CCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCChhhHHHHHHHHHHc
Confidence 99999999999998887766 9999999998 56789999999999999998874 56899999999999999999
Q ss_pred CcEEEEecccccCcccccc--CcccccEEEec--cccccCCCCceEEEEecC-CCCccccccccCCcc-ccc---cCCCC
Q psy8850 166 GVIFHCDAAQAVGKIDINI--QNYKVDLMSFS--AHKIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE-YGL---RSGTL 236 (397)
Q Consensus 166 gi~livD~a~~~~~~~~~~--~~~~~d~~~~s--~~K~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~-~~~---~~~~~ 236 (397)
|+++|+|++|+.|....+. ..+ .|+.++| .+|.+++...|+++.+++ ..+.+......+... ..+ ..+ .
T Consensus 171 ~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~ 248 (391)
T 3dr4_A 171 NLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVG-F 248 (391)
T ss_dssp TCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCC-C
T ss_pred CCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccc-c
Confidence 9999999999977653322 111 3566666 559444333577777643 323333222221110 000 001 0
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC--CC--CCCCceEEEEecC---CChHHHHH
Q psy8850 237 ATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD--MN--NRIPHNLNISFNF---IEGESLLM 308 (397)
Q Consensus 237 ~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~--~~~~~~~~~~~~~---~~~~~~~~ 308 (397)
+ ..+..+.+++... .++++++.++.+++++++.+.|.+ + ++.+... +. .....++.+.++. .+..++.+
T Consensus 249 ~-~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 325 (391)
T 3dr4_A 249 N-YRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIK 325 (391)
T ss_dssp B-CBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHH
T ss_pred c-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHH
Confidence 1 1112222333322 235677888899999999999998 5 6666654 22 1223455666653 45778888
Q ss_pred HhC--CcEecccC---ccCCCCCChhhHHHh-----hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 309 AIK--DIAVSSGS---ACTSASLEPSYVLRA-----LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 309 ~l~--~i~~~~g~---~~~~~~~~~~~~~~~-----~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.|. ||.+.++. .+.+ .+.. +..........+|+++...+|++||++++++|++++
T Consensus 326 ~L~~~GI~v~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 326 DLDALGIESRPVFHPMHIMP-------PYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHTTCCCEECCCCGGGSG-------GGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHCCCceeecCCccccCh-------hhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 886 88888775 2222 0000 000112235789999999999999999999998653
No 153
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=7.3e-28 Score=225.76 Aligned_cols=309 Identities=13% Similarity=0.087 Sum_probs=218.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g 110 (397)
.|.+++...+...++++.++++++.+ +.+++ ++|++|+.+++.++. ++|++|+++.++|+++...+... ...|
T Consensus 43 ~~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~-~sGt~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g 116 (386)
T 1cs1_A 43 AHDYSRRGNPTRDVVQRALAELEGGA-GAVLT-NTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHTCS-EEEEE-SSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CcceeCCCCccHHHHHHHHHHHhCCC-cEEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcC
Confidence 34445555577889999999999987 45665 555999999999886 78999999999999987766544 3459
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d 190 (397)
.++..++.+ |++++++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+...... .+++|
T Consensus 117 ~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~d 190 (386)
T 1cs1_A 117 YRVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGAD 190 (386)
T ss_dssp CEEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCS
T ss_pred CEEEEeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCce
Confidence 999999875 899999999999999999999999999999999999999999999999999977654333 35789
Q ss_pred EEEeccccc-cCCCCc--eEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 191 LMSFSAHKI-YGPKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 191 ~~~~s~~K~-~g~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
+++.|+||. .++.+. |++++++ +..+.+.+...++ .++.+....++...+++. +....++..++.
T Consensus 191 i~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~ 259 (386)
T 1cs1_A 191 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVTGGAFDSYLLLRGLRT----LVPRMELAQRNA 259 (386)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCBCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred EEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhcccH----HHHHHHHHHHHH
Confidence 999999994 455442 9999986 4444444433221 123343333333344443 344566677778
Q ss_pred HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--CcEecc---c------Ccc
Q psy8850 267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DIAVSS---G------SAC 321 (397)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~---g------~~~ 321 (397)
+.+.+.|++ ++.+.....+. ...+.++.+.+++. ..++...|. ||.+.. | ..|
T Consensus 260 ~~l~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~ 337 (386)
T 1cs1_A 260 QAIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHA 337 (386)
T ss_dssp HHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEG
T ss_pred HHHHHHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCCCcceeeecc
Confidence 888888887 66654331111 12356777777653 456666664 777763 2 111
Q ss_pred CC--CCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 322 TS--ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 322 ~~--~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
.. ....++..+...|+.. +++||+++...++++++.+.++|+++
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~----~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 338 ATMTHAGMAPEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp GGTTTTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCC----CeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 11 1112334556666653 89999999888888888888777654
No 154
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.96 E-value=1.3e-27 Score=226.80 Aligned_cols=337 Identities=16% Similarity=0.120 Sum_probs=228.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
+|+.+++++.+.+... .|.. ..+...++++.++++++.+ ++++++|+++|+.+++.++. +|++
T Consensus 30 ~p~~~~~a~~~~~~~~-------~y~~---~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~-----~gd~ 92 (424)
T 2po3_A 30 DRARLYERLDRALDSQ-------WLSN---GGPLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG-----LTGE 92 (424)
T ss_dssp CHHHHHHHHHHHHHHT-------CCSS---SCHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT-----CCSE
T ss_pred ChHHHHHHHHHHHhcC-------Cccc---CCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-----CCCE
Confidence 4578999998888641 1111 1246788999999999975 89999999999999999874 5799
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi 167 (397)
|++++++|+++...+... |.+++.++.++ ++.+|+++|++++++++++|++++ |+|...++++|.++|+++|+
T Consensus 93 Vlv~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~ 166 (424)
T 2po3_A 93 VIMPSMTFAATPHALRWI---GLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGL 166 (424)
T ss_dssp EEEESSSCTHHHHHHHHT---TCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTC
T ss_pred EEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCC
Confidence 999999999999877766 99999999985 678999999999998999998864 79999999999999999999
Q ss_pred EEEEecccccCccccccCcc--cccEEEeccc--cccCCCCceEEEEe-cCCCCccccccccCCcc-ccc-cCCCC-chh
Q psy8850 168 IFHCDAAQAVGKIDINIQNY--KVDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE-YGL-RSGTL-ATH 239 (397)
Q Consensus 168 ~livD~a~~~~~~~~~~~~~--~~d~~~~s~~--K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~ 239 (397)
++|+|++|+.|.. ++...+ ..|++++|+| |.+++..+|+++.+ ++..+.+......+... ... ..+.+ ...
T Consensus 167 ~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 245 (424)
T 2po3_A 167 RLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMS 245 (424)
T ss_dssp EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCC
T ss_pred EEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcC
Confidence 9999999996553 221111 2579999988 75554456888887 44444444332211100 000 01111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEec----CCChHHHHHHhC--
Q psy8850 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FIEGESLLMAIK-- 311 (397)
Q Consensus 240 ~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~l~-- 311 (397)
.+.+. .++.. .++++++.++..++++++.+.|.+ ++++.+...+.. ....++.+.++ +.+..++.+.|.
T Consensus 246 ~~~aa-~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~ 322 (424)
T 2po3_A 246 EAAAA-MGLTS-LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAE 322 (424)
T ss_dssp HHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHT
T ss_pred HHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHC
Confidence 11111 22221 235667888888899999999988 778887763221 21245556665 356777877776
Q ss_pred CcEecccCccCCCCCChhhHHHhhCC--Cc---cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 312 DIAVSSGSACTSASLEPSYVLRALGC--ND---ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 312 ~i~~~~g~~~~~~~~~~~~~~~~~g~--~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
||.+.+ .|.+.. .....++..|. .+ ......||+++...++++|+++++++|++++++.++
T Consensus 323 gI~v~~--~~~~~~-~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 323 GVHTRA--YFSPGC-HELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp TEECBC--TTCSCG-GGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceec--ccCCcc-ccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 888876 222100 00000001110 00 001244888877889999999999999999876654
No 155
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=2.8e-29 Score=231.98 Aligned_cols=318 Identities=15% Similarity=0.167 Sum_probs=210.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
|+++...++++.+++++.+.... .. .|...+...++++.+++++|.+ ++++++||++|+.+++.++.
T Consensus 8 ~~~~~~~~p~~~~~~a~~~~~~~--------~~--~y~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~~~~- 74 (347)
T 1jg8_A 8 LRSDTVTKPTEEMRKAMAQAEVG--------DD--VYGEDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT- 74 (347)
T ss_dssp CSCGGGCCCCHHHHHHHHTCCCC--------CG--GGTCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC-
T ss_pred eccccCCCCCHHHHHHHhcCCCC--------Cc--ccCCChHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHHHHHhc-
Confidence 45566667788888887644211 11 1222345778999999999986 68889999999999888876
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcc-cccc
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEI-GVIQ 153 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~t-G~~~ 153 (397)
++||+|++++++|.+...........|.+++.+ .++++.+|++++++++++ ++++|++++++||| |.++
T Consensus 75 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~ 150 (347)
T 1jg8_A 75 ---QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV 150 (347)
T ss_dssp ---CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred ---CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence 789999999999877543211222238899888 555677899999999975 68999999999999 9998
Q ss_pred cH---HHHHHHHHhcCcEEEEecccccCcc---ccccC--cccccEEEeccccccCCCCce-EEEEecCCCCcccccccc
Q psy8850 154 PI---LEIGELCRSKGVIFHCDAAQAVGKI---DINIQ--NYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQIHG 224 (397)
Q Consensus 154 ~l---~~i~~l~~~~gi~livD~a~~~~~~---~~~~~--~~~~d~~~~s~~K~~g~~g~g-~~~~~~~~~~~~~~~~~~ 224 (397)
|. ++|+++|++||+++|+|++|.++.. ..+.. ..+.|.+++|+||.++++ .| +++.+++..+.+......
T Consensus 151 ~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~~~~~~~~ 229 (347)
T 1jg8_A 151 PLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARKARKM 229 (347)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHHHHHHHHH
Confidence 85 6788999999999999998754221 11111 125788888999954432 35 555565444433221111
Q ss_pred CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCC
Q psy8850 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIE 302 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 302 (397)
.+ . ..........++. .+++...+ . .++..++++++.+.|++ + ++.+...+. .+.++++.++ +.+
T Consensus 230 ~~--~--~~~~~~~~~~~~~-~~l~~~~~---~-~~~~~~~~~~l~~~L~~-~-~~~~~~~~~--~~~~~~~~~~~~~~~ 296 (347)
T 1jg8_A 230 LG--G--GMRQAGVLAAAGI-IALTKMVD---R-LKEDHENARFLALKLKE-I-GYSVNPEDV--KTNMVILRTDNLKVN 296 (347)
T ss_dssp HT--C--CCSSTHHHHHHHH-HHHHHSST---T-HHHHHHHHHHHHHHHHH-H-TCBCCGGGC--CSSEEEEECTTSSSC
T ss_pred cC--C--chhHHHHHHHHHH-HHHHHHHH---H-HHHHHHHHHHHHHHHHh-c-CceeccCCC--cceEEEEEcccccCC
Confidence 00 0 0001111222222 33432221 1 22334567888888888 5 554422111 2456677776 356
Q ss_pred hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
..++.+.|. ||.+.++. .+++|++++..++++++++++++|++++++
T Consensus 297 ~~~~~~~l~~~gi~v~~~~-----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 297 AHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEecCC-----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 778887776 88877531 268999998888999999999999998764
No 156
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=3.8e-29 Score=236.65 Aligned_cols=319 Identities=15% Similarity=0.042 Sum_probs=216.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCC-CC---cEEEeCChhHHHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YAD-PR---EIIWTSGATESNNLAI 75 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-~~---~i~~~~g~t~a~~~~l 75 (397)
|+.+..++++.+.+++.+.... ... |.. .....++++.+++++ +.. ++ +|++|+|+++|+.+++
T Consensus 49 ~~~~~~~~~~~v~~a~~~~~~~~~~~------Y~~----~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 118 (413)
T 3t18_A 49 DDKGKIIALPSVYDRLDEMDRSHIAS------YAP----IEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAI 118 (413)
T ss_dssp CTTSCBCCCHHHHHHHHHSCHHHHHS------CCC----TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHH
T ss_pred CCCCCcCChHHHHHHHHhcCcccccC------cCC----CCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHH
Confidence 3445567788999888764321 111 111 112455666666654 321 34 8999999999999999
Q ss_pred HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcC----Cce-EEEEecc-cCc
Q psy8850 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICS----DTI-LVSVMLV-NNE 148 (397)
Q Consensus 76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~----~~~-~v~~~~~-~~~ 148 (397)
.++. ++||+|+++.|.|+++...+... |.+++.+|. ++++.+|+++|++++++ +++ ++++++| +||
T Consensus 119 ~~~~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NP 191 (413)
T 3t18_A 119 FSYL----DEGDPLICHDYYWAPYRKICEEF---GRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNP 191 (413)
T ss_dssp HHHC----CSSCEEEEESSCCTHHHHHHHHH---TCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTT
T ss_pred HHhc----CCCCEEEECCCCcccHHHHHHHh---CCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCC
Confidence 9887 79999999999999999888877 999999998 45568999999999975 677 7888888 999
Q ss_pred ccccccHHH---HHHHHH------hcCcEEEEecccccCcc------cc--ccCccccc---EEEeccccccCCCC--ce
Q psy8850 149 IGVIQPILE---IGELCR------SKGVIFHCDAAQAVGKI------DI--NIQNYKVD---LMSFSAHKIYGPKG--IG 206 (397)
Q Consensus 149 tG~~~~l~~---i~~l~~------~~gi~livD~a~~~~~~------~~--~~~~~~~d---~~~~s~~K~~g~~g--~g 206 (397)
||.+.|.++ |+++|+ +||++||+|++|..... ++ .....+.+ +++.|++|.+|..| +|
T Consensus 192 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG 271 (413)
T 3t18_A 192 TGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSG 271 (413)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCE
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCcCcE
Confidence 999999655 556666 89999999999862211 10 11111222 77889999766445 79
Q ss_pred EEEE---ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8850 207 ALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-----ARIEMKEELKRILFLQKRLYNGLMESIE 278 (397)
Q Consensus 207 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (397)
++++ +++..+.+....... .....+.++.....++.++++. +.+..+++.+++.++++++.+.|++ +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~- 346 (413)
T 3t18_A 272 AAVGISSSKEIIEEFEASLAHS---ARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKE-N- 346 (413)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---HHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-
T ss_pred EEEEecCCHHHHHHHHHHHHHh---hhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-
Confidence 9988 655544443321100 0000123455555555555543 2345667788899999999999998 4
Q ss_pred cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850 279 EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356 (397)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 356 (397)
++.+..+.. +.++++.+ .+..++.+.|. ||.+.+| .+++||+++.. ++
T Consensus 347 g~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~gv~v~~g------------------------~~~iRis~~~~-~~ 396 (413)
T 3t18_A 347 KLTMIPYFG---GFFTFIPT--DKAFDIVKDLEKENIFTIPS------------------------AKGIRVAICGV-GE 396 (413)
T ss_dssp TCCCBCCCS---SSCEEEEC--SCHHHHHHHHHHTTEECEEC------------------------SSEEEECTTTS-CG
T ss_pred CCCccCCCc---eEEEEeCC--CCHHHHHHHHHhCCEEEecC------------------------CCceEEEEeeC-CH
Confidence 666554433 23334433 45677777665 8888876 27899999853 45
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8850 357 KEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 357 ~~i~~~~~~l~~~~~~~~~ 375 (397)
+++ +++|.++++++++
T Consensus 397 ~~~---l~~l~~~l~~~~~ 412 (413)
T 3t18_A 397 EKI---PKLVQRLAFYTNK 412 (413)
T ss_dssp GGH---HHHHHHHHHHHHC
T ss_pred HHH---HHHHHHHHHHHhc
Confidence 555 7777777777653
No 157
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.96 E-value=1.9e-29 Score=239.20 Aligned_cols=338 Identities=14% Similarity=0.163 Sum_probs=222.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
.++..++++.|++++.+.+...+ +++.+..+............+++.++++++++++++++ ++|++|+..++.++.
T Consensus 36 ~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~-~sGs~a~~~a~~~~~- 113 (420)
T 3gbx_A 36 IASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL- 113 (420)
T ss_dssp CTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC-
T ss_pred eccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEe-cCcHHHHHHHHHHhc-
Confidence 34555689999999999885534 45544222222222344556778999999998665655 555889999999887
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHH--HhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILE 157 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~--~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~ 157 (397)
++||+|+++.++|+++...... ....+..+..++.+.++.+|+++|++++++ ++++|++++++|+ ...|+++
T Consensus 114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~ 188 (420)
T 3gbx_A 114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAK 188 (420)
T ss_dssp ---CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHH
T ss_pred ---CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHH
Confidence 7999999999999885422221 111145666677777788999999999987 6999999888775 5789999
Q ss_pred HHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEeccccc-cCCCCceEEEEec---CCCCccccccccCCcc
Q psy8850 158 IGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRR---NPRTRIEAQIHGGGHE 228 (397)
Q Consensus 158 i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~---~~~~~~~~~~~~~~~~ 228 (397)
|.++|++||+++|+|++|+.+.. +..+. .+|++++|+||. .|+.| |+++.++ +....+......
T Consensus 189 l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~---- 261 (420)
T 3gbx_A 189 MREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFP---- 261 (420)
T ss_dssp HHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCC----
Confidence 99999999999999999874433 22222 489999999994 46765 8888886 232233222211
Q ss_pred ccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHH
Q psy8850 229 YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGES 305 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 305 (397)
...++++...+.++..++... .++++++.+++.++++++.+.|.+ .++.+..+.. ...++++.++ +.+...
T Consensus 262 --~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 335 (420)
T 3gbx_A 262 --SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGT--ENHLFLLDLVDKNLTGKE 335 (420)
T ss_dssp -----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred --CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCC--CCeEEEEEcCCCCCCHHH
Confidence 112355566666666666544 456788899999999999999998 6777765311 1456666664 345666
Q ss_pred HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHHH
Q psy8850 306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~~ 373 (397)
+...|. ||.+.+...... .........+||+++.. .+++++++++++|++++++.
T Consensus 336 ~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 336 ADAALGRANITVNKNSVPND-------------PKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHHHHTTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCcEeccccCCCC-------------ccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 666665 888887322111 00111235699998643 45899999999999887553
No 158
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.96 E-value=5.3e-28 Score=229.92 Aligned_cols=325 Identities=8% Similarity=0.032 Sum_probs=221.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---cC
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR 85 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~~ 85 (397)
+++++++++.+++.....++.. .+. .+...++++.++++++.++++|++++|+++|++++++++..... ++
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~ 133 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFG-GIT-----HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEA 133 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCS-SEE-----CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhccccccc-ccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC
Confidence 6899999999998763322111 111 23457788899999998888999999999999999986542211 15
Q ss_pred CCEEEEcCCCChhhHHHHHHHhh-----------CCcEEEEeccCC------CCCCCHHHHHHHhc---CCceEEEEecc
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLEN-----------DGFRVTYLKPKN------NGLITLSQLEEKIC---SDTILVSVMLV 145 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~-----------~g~~v~~v~~~~------~~~~d~~~l~~~i~---~~~~~v~~~~~ 145 (397)
+++|++.++.|+++......+.. ....+..++.+. .+.+|+++|+++++ +++++|+++++
T Consensus 134 ~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~ 213 (429)
T 1s0a_A 134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPI 213 (429)
T ss_dssp CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSS
T ss_pred CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 88999999888765443332210 011344555532 23589999999987 46778888877
Q ss_pred -cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecC
Q psy8850 146 -NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRN 213 (397)
Q Consensus 146 -~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~ 213 (397)
+||||.+.| +++|+++|++||+++|+|++|+ ++.. ..+.....+|++++ +| +.|+ .++|+++++++
T Consensus 214 ~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~~~~~~~ 291 (429)
T 1s0a_A 214 VQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSATLTTRE 291 (429)
T ss_dssp EECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEEEEECHH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEe--cccccCCCccceEEEeCHH
Confidence 899998877 8999999999999999999997 4322 12222335777755 49 6555 57899999875
Q ss_pred CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEEEeCCCCCCC
Q psy8850 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRI 290 (397)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~ 290 (397)
..+.+..... ..... ......|...+++..++++.+.+ ..+.+++.++++++.+.|++ + +++......
T Consensus 292 ~~~~l~~~~~-~~~~~-~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~---- 362 (429)
T 1s0a_A 292 VAETISNGEA-GCFMH-GPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAP-ARDAEMVADVRVL---- 362 (429)
T ss_dssp HHHHHHTSTT-SSCSC-CCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGG-GGGCTTEEEEEEE----
T ss_pred HHHHhhcCCC-ccccc-CCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-HhcCCCEEEEEEe----
Confidence 5443332100 00000 11223456667777788887654 35677888889999999987 4 455433221
Q ss_pred CceEEEEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850 291 PHNLNISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (397)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 367 (397)
+.++++.++. .+..++...|. ||.+.+. ++++||+++..++++++++++++|+
T Consensus 363 g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------------------------~~~iRis~~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 363 GAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp TTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCcccHHHHHHHHHHCCCEEecc------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3466677764 45667777765 7777642 2789999998899999999999999
Q ss_pred HHHHHHH
Q psy8850 368 MKVKKLR 374 (397)
Q Consensus 368 ~~~~~~~ 374 (397)
+++++++
T Consensus 419 ~~~~~~~ 425 (429)
T 1s0a_A 419 RAVQDET 425 (429)
T ss_dssp HHTSSGG
T ss_pred HHHHhhh
Confidence 8876543
No 159
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.96 E-value=9.6e-29 Score=230.17 Aligned_cols=327 Identities=16% Similarity=0.133 Sum_probs=220.7
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCC
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGK 87 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~ 87 (397)
.++++.+++.+.+.... +. ..+...++++.++++++.+ ++++++|||+|+.+++.++ . ++||
T Consensus 14 ~~~~v~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~----~~gd 76 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHGQ-------YI----LGPEVTELEDRLADFVGAK--YCISCANGTDALQIVQMALGV----GPGD 76 (367)
T ss_dssp HHHHHHHHHHHHHHHCC-------CS----SCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC----CTTC
T ss_pred cCHHHHHHHHHHHhcCC-------cc----CChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCC----CCcC
Confidence 35677888877776521 11 1235788999999999987 7999999999999999988 5 7899
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g 166 (397)
+|+++.++|+++...+... |.+++.++.+++ +.+|++++++++++++++|+ ++||+|...|+++|.++|++||
T Consensus 77 ~Vi~~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~ 150 (367)
T 3nyt_A 77 EVITPGFTYVATAETVALL---GAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYG 150 (367)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTT
T ss_pred EEEECCCccHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcC
Confidence 9999999999999888776 999999999854 88999999999999999887 6678999999999999999999
Q ss_pred cEEEEecccccCccccccCcccc--cEEEecc--ccccCCCC-ceEEEEecC-CCCccccccccCCcc------ccccCC
Q psy8850 167 VIFHCDAAQAVGKIDINIQNYKV--DLMSFSA--HKIYGPKG-IGALYIRRN-PRTRIEAQIHGGGHE------YGLRSG 234 (397)
Q Consensus 167 i~livD~a~~~~~~~~~~~~~~~--d~~~~s~--~K~~g~~g-~g~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~ 234 (397)
+++|+|++|+.|.. .+....+. |++++|+ +|.+|+.| .|+++.+++ ....+......+... .++...
T Consensus 151 ~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~ 229 (367)
T 3nyt_A 151 IPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSR 229 (367)
T ss_dssp CCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCC
T ss_pred CEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCC
Confidence 99999999997664 22222222 9999996 89666533 577777533 333333322221110 011111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecCCChHHHHHHhC-
Q psy8850 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFIEGESLLMAIK- 311 (397)
Q Consensus 235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~- 311 (397)
.+....+.....++ .+++..++.+++++++.+.|++ + ++.+...+.. .....+.+.++ +..++.+.|.
T Consensus 230 -~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~ 300 (367)
T 3nyt_A 230 -LDTLQAAILLPKLE----IFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRMD--NRESVQASLKA 300 (367)
T ss_dssp -CCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEECS--SHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEeC--CHHHHHHHHHH
Confidence 22222222222332 3456677888888999999988 5 3433322221 22334445544 5677888886
Q ss_pred -CcEecccCccCCCCCChhh--HHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 312 -DIAVSSGSACTSASLEPSY--VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 312 -~i~~~~g~~~~~~~~~~~~--~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
||.+..+... +....+.+ ....++.........||+++...+|++||+++++.|++.
T Consensus 301 ~GI~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 301 AGVPTAVHYPI-PLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HTCCCBCSCSS-CGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred CCCceeccCCC-ccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 8877765321 10000000 000011112234578999999999999999999999754
No 160
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.96 E-value=1.8e-29 Score=240.49 Aligned_cols=281 Identities=16% Similarity=0.114 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--
Q psy8850 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-- 118 (397)
Q Consensus 41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-- 118 (397)
....++++.+++ +|++ +++++++|+|+|+.+++.++. ++||+|+++.++|+++..++... |.+++.++.
T Consensus 57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~ 127 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQ 127 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHHH---TCCEEECEEEE
T ss_pred hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHc---CCeEEEEeCee
Confidence 367889999999 9987 679999999999999999987 79999999999999999998887 899999988
Q ss_pred CCC----CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-----ccccCcccc
Q psy8850 119 KNN----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKV 189 (397)
Q Consensus 119 ~~~----~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~ 189 (397)
+++ +.+|++++ +.+++++|++++ .|++|.+.|+++|+++|++||+++|+|++|+. .. +.+....++
T Consensus 128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~ 202 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQA 202 (446)
T ss_dssp CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTC
T ss_pred ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCC
Confidence 554 56788887 566889999998 67799999999999999999999999999985 22 344444578
Q ss_pred cEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy8850 190 DLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQK 267 (397)
Q Consensus 190 d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~ 267 (397)
|++++|+|| ++|+.|+|+++++++... ..+....+ ..+..++++...++++.++++++... .+++.++..++++
T Consensus 203 Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~---~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~ 278 (446)
T 2x3l_A 203 DYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL---SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIE 278 (446)
T ss_dssp SEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH---HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999 888888999999987654 22221111 12345677888888887788877652 3446666666666
Q ss_pred HHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec-ccCccCCCCCChhhHHHhhCCCccccCc
Q psy8850 268 RLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS-SGSACTSASLEPSYVLRALGCNDELAHS 344 (397)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 344 (397)
++++. ++.+..+.. +..+++.+++.+..++.+.|. ||.+. +| .+
T Consensus 279 ~l~~~------g~~~~~~~~---~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g------------------------~~ 325 (446)
T 2x3l_A 279 CLENK------GFEMLQVDD---PLKLLIKYEGFTGHDIQNWFMNAHIYLELAD------------------------DY 325 (446)
T ss_dssp HHHHH------TCEEEECSS---TTEEEEECTTSCHHHHHHHHHHTTEEESEEC------------------------SS
T ss_pred HHHHc------CCEECcCCC---CeEEEEEeCCcCHHHHHHHHHHCCCEEEecC------------------------CC
Confidence 66665 455554432 335677776667778887775 77775 33 26
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 345 SIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 345 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
++|++++..++++++ +++++|+++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 899999988899999 9999999987655
No 161
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.96 E-value=6e-28 Score=226.35 Aligned_cols=303 Identities=14% Similarity=0.135 Sum_probs=209.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g 110 (397)
.+.+++...+...++++.+++++|.+ +.++++||++|+.+++.++. ++||+|+++.+.|+++...+.. +...|
T Consensus 50 ~~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g 123 (389)
T 3acz_A 50 GHIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFG 123 (389)
T ss_dssp CCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 34444444567889999999999987 67777888999999999876 7899999999999998877654 34459
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc--ccccCccc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI--DINIQNYK 188 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~--~~~~~~~~ 188 (397)
.+++.++.. |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.. +++ ++
T Consensus 124 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~ 195 (389)
T 3acz_A 124 IEVDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LG 195 (389)
T ss_dssp CEEEEECTT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TT
T ss_pred CEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cC
Confidence 999999874 89999999999999999999999999999999999999999999999999986653 333 47
Q ss_pred ccEEEecccc-ccCCCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 189 VDLMSFSAHK-IYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF 264 (397)
Q Consensus 189 ~d~~~~s~~K-~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~ 264 (397)
+|+++.|++| +.|+.+ .|++++++ +..+.+...... + .++.+....+.....++. +..+.++..+
T Consensus 196 ~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~------~-g~~~~~~~~~~~~~~l~~----l~~r~~~~~~ 264 (389)
T 3acz_A 196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD------A-GSLMAPMDAFLCARGMKT----LPIRMQIHME 264 (389)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH------H-CCCCCHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred CeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh------c-CCCCCHHHHHHHHcCccH----HHHHHHHHHH
Confidence 9999999999 555554 49999987 555555433311 0 112232333333334432 3344556667
Q ss_pred HHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--CcEecc---c------C
Q psy8850 265 LQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DIAVSS---G------S 319 (397)
Q Consensus 265 ~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~---g------~ 319 (397)
++..+.+.|++ .+.+...-.+. ...+.++.|.+++ ..+....+. ++.+.. | .
T Consensus 265 ~~~~l~~~l~~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~ 341 (389)
T 3acz_A 265 NGLKVAKFLEQ-HEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLGCVDTLIE 341 (389)
T ss_dssp HHHHHHHHHHH-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCCCSSCEEE
T ss_pred HHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCCCcccEee
Confidence 77778888877 55443221111 1235677788765 455555554 665554 4 3
Q ss_pred ccCCCC--CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850 320 ACTSAS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (397)
Q Consensus 320 ~~~~~~--~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 366 (397)
.|.... .-++..+...|+.. +.||+|++...+++.++.+.++|
T Consensus 342 ~~~~~~~~~~~~~~~~~~g~~~----~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 342 HPASMTHAAVPENIMRKQGITP----ELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp CTTTTTTSSSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCcccccccCCHHHHHhcCCCc----CeEEEEeccCCHHHHHHHHHHHH
Confidence 332211 11234456666653 89999999865444444444444
No 162
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.96 E-value=2.2e-28 Score=230.06 Aligned_cols=301 Identities=13% Similarity=0.101 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEecc
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 118 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~ 118 (397)
.+...++++.++++++.+ +.+++ ++|++|+.+++. +. ++||+|+++.+.|+++...+..+ ...|.+++.++.
T Consensus 66 ~p~~~~l~~~la~~~g~~-~~i~~-~sG~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 66 NPTRNCLEKAVAALDGAK-YCLAF-ASGLAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEE-SCHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred CchHHHHHHHHHHHhCCC-cEEEE-CCHHHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 356788999999999987 44555 455789999988 76 78999999999999987766543 344999999987
Q ss_pred CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC-cEEEEecccccCccccccCcccccEEEeccc
Q psy8850 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 197 (397)
Q Consensus 119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~livD~a~~~~~~~~~~~~~~~d~~~~s~~ 197 (397)
+ |++++++++++++++|++++++||||.+.|+++|+++|+++| +++|+|++|+.+.....+ .+++|+++.|++
T Consensus 139 ~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~s 212 (403)
T 3cog_A 139 S-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSAT 212 (403)
T ss_dssp T-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETT
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcCh
Confidence 6 899999999999999999999999999999999999999999 999999999876532222 257999999999
Q ss_pred c-ccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 198 K-IYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 273 (397)
Q Consensus 198 K-~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l 273 (397)
| +.|+.+ +|+++++ ++..+.+.....++ .++.+....+....+++.+ ..+.++..++...+.+.+
T Consensus 213 K~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~~l----~~r~~~~~~n~~~l~~~l 281 (403)
T 3cog_A 213 KYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL-------GAVPSPIDCYLCNRGLKTL----HVRMEKHFKNGMAVAQFL 281 (403)
T ss_dssp TTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCeEEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHH
Confidence 9 555554 4999886 34444444332221 1233444444443455433 334445555566666666
Q ss_pred hhhcCcEE--------------EeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe---cccC------ccCCC--CC
Q psy8850 274 MESIEEIY--------------INGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV---SSGS------ACTSA--SL 326 (397)
Q Consensus 274 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~---~~g~------~~~~~--~~ 326 (397)
++ .+.+. +..+.....++++.+.+++. ..+....+. ++.. ..|. ++... ..
T Consensus 282 ~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~ 359 (403)
T 3cog_A 282 ES-NPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHAS 359 (403)
T ss_dssp HT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTT
T ss_pred hc-CCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-HHHHHHHHHhCCcceEccCCCCcceeeeccccccccc
Confidence 55 33222 11111112366777777642 233333333 5432 2342 12111 01
Q ss_pred ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.++......|+. .+.||||++..+++++|+.+.++|++++
T Consensus 360 ~~~~~~~~~g~~----~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 360 VLKNDRDVLGIS----DTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp SCHHHHHHHTCC----TTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHhcCCC----cCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 223445566664 3899999999888888888777776543
No 163
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.96 E-value=1.9e-29 Score=237.24 Aligned_cols=314 Identities=13% Similarity=0.067 Sum_probs=215.3
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEE--eCChhHHHHHHHHHhH
Q psy8850 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIW--TSGATESNNLAIKGAA 79 (397)
Q Consensus 5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~--~~~~i~~--~~g~t~a~~~~l~~l~ 79 (397)
+..++++.+.+++.+.+... .. . .|.. .....++++.+++++ +. ++++|++ |+|+++|+++++.++.
T Consensus 41 ~~~~~~~~v~~a~~~~~~~~--~~-~-~y~~----~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~ 112 (394)
T 2ay1_A 41 GHTPIMRAVHAAEQRMLETE--TT-K-TYAG----LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELAR 112 (394)
T ss_dssp SCCCCCHHHHHHHHHHHHHC--CC-C-CCCC----SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHhcCCc--cc-C-CCCC----CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHH
Confidence 34467899999999887541 10 0 1111 123567888888886 55 6678999 9999999999998775
Q ss_pred hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC---CceEEEEecccCccccccc
Q psy8850 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~ 154 (397)
.. .+||+|+++.++|+++...+... |.+++.+|.+ +++.+|++++++++++ +++++++++++||||.++|
T Consensus 113 ~~--~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~ 187 (394)
T 2ay1_A 113 MA--NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLT 187 (394)
T ss_dssp HH--CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCC
T ss_pred hc--CCCCEEEEcCCCChhHHHHHHHc---CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC
Confidence 21 38899999999999998887777 8999999985 5677899999999875 3678888999999999988
Q ss_pred ---HHHHHHHHHhcCcEEEEecccccCcc-------ccc-cCccc-ccEEEeccccccCCCC--ceEEEE---ecCCCCc
Q psy8850 155 ---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQNYK-VDLMSFSAHKIYGPKG--IGALYI---RRNPRTR 217 (397)
Q Consensus 155 ---l~~i~~l~~~~gi~livD~a~~~~~~-------~~~-~~~~~-~d~~~~s~~K~~g~~g--~g~~~~---~~~~~~~ 217 (397)
+++|+++|++||+++|+|++|+.... ++. +...+ .++++.|+||.+|+.| +|++++ +++....
T Consensus 188 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~ 267 (394)
T 2ay1_A 188 LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATREL 267 (394)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHH
Confidence 45789999999999999999985322 121 21112 3477889999777556 599887 3322222
Q ss_pred cccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCC
Q psy8850 218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN 288 (397)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~ 288 (397)
+...+.. ..+...++++.....++.++++.. .++++++.++++++++++.+.|++ +. ++.+..+..
T Consensus 268 l~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~- 342 (394)
T 2ay1_A 268 AQGAMAF---LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFVAEHR- 342 (394)
T ss_dssp HHHHHHH---HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHHHHCC-
T ss_pred HHHHHHH---HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeEEcCCc-
Confidence 2111100 001112233445555555666533 346788889999999999999988 42 243333221
Q ss_pred CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850 289 RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 366 (397)
+.++++. .+...+...+. ||.+.+| +||+++ .++++++++++++|
T Consensus 343 --g~~~~~~---~~~~~~~~~l~~~gi~v~~~---------------------------~Ris~~-~~~~~~i~~~~~~l 389 (394)
T 2ay1_A 343 --GMFSRLG---ATPEQVKRIKEEFGIYMVGD---------------------------SRINIA-GLNDNTIPILARAI 389 (394)
T ss_dssp --SSEEECC---CCHHHHHHHHHHHCEECCTT---------------------------CEEEGG-GCCTTTHHHHHHHH
T ss_pred --eEEEeeC---CCHHHHHHHHHhCCEEecCC---------------------------CeEEee-cCCHhhHHHHHHHH
Confidence 2333333 33445555553 7777642 599998 47899999999999
Q ss_pred HHH
Q psy8850 367 KMK 369 (397)
Q Consensus 367 ~~~ 369 (397)
+++
T Consensus 390 ~~~ 392 (394)
T 2ay1_A 390 IEV 392 (394)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
No 164
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.96 E-value=2.1e-28 Score=233.42 Aligned_cols=303 Identities=17% Similarity=0.184 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEecc
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 118 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~ 118 (397)
.+...++++++++++|.+ ++++++||++|+.+++. +. ++||+|+++.+.|+++...+..+ ...|.+++.+|.
T Consensus 132 ~~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 204 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 346888999999999976 77888888999988775 44 78999999999999998766543 334999999987
Q ss_pred CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc
Q psy8850 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 198 (397)
Q Consensus 119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K 198 (397)
+ |++++++++++++++|++++++||||.+.|+++|+++|++||+++|+|++|+.+.....+ .+++|+++.|+||
T Consensus 205 ~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-~~~~div~~S~sK 278 (464)
T 1ibj_A 205 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK 278 (464)
T ss_dssp T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTT
T ss_pred C-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCEEEEECCcc
Confidence 5 899999999999999999999999999999999999999999999999999876542112 2579999999999
Q ss_pred -ccCCCCc--eEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy8850 199 -IYGPKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN--- 271 (397)
Q Consensus 199 -~~g~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~--- 271 (397)
+.|+.|+ |++++++ +..+.+...... ..+..+....++...+++.....++...+....+.+++.+
T Consensus 279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~-------~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~ 351 (464)
T 1ibj_A 279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-------EGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPR 351 (464)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHHHHH-------TTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cccCCCCCcEEEEEEChHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666554 9999985 343444332210 0112333333333345543322233323333333333322
Q ss_pred -------HHhhhcCcEEEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccC----ccCCCCCC----hhhHHH
Q psy8850 272 -------GLMESIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGS----ACTSASLE----PSYVLR 333 (397)
Q Consensus 272 -------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~----~~~~~~~~----~~~~~~ 333 (397)
.|.+ ++++.+..+.....++++.+.+++.+ ...+.+.|. ++.+..|. .+.+..+. ++....
T Consensus 352 v~~~~~~~L~~-~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~ 430 (464)
T 1ibj_A 352 VKKVYYAGLPD-HPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVRE 430 (464)
T ss_dssp CCEEECTTSTT-STTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSS
T ss_pred ceEEECCCCCC-CcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHH
Confidence 2332 33444433332223567778775322 234677765 77777775 33331110 000111
Q ss_pred hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
..|.. .++||++++. ++++++++.|+++++
T Consensus 431 ~~g~~----~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 431 ARGLT----EDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp SSSCC----TTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred hcCCC----cCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 22222 4789999996 899999999998875
No 165
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.96 E-value=2.1e-28 Score=237.97 Aligned_cols=333 Identities=12% Similarity=0.064 Sum_probs=218.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CC---CCcEEEeCChhHHHHHHHHHhHhh-h
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--AD---PREIIWTSGATESNNLAIKGAAHF-Y 82 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~---~~~i~~~~g~t~a~~~~l~~l~~~-~ 82 (397)
+++.+++++.+.+... .++ .......+....+.+.+.+.++ .+ +++|++|+|+++|+.+++.++... .
T Consensus 116 ~~~~~v~a~~~~~~~~-~y~-----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l 189 (533)
T 3f6t_A 116 NRDKVVAEWVNGAVAN-NYP-----VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL 189 (533)
T ss_dssp CHHHHHHHHHHHHHTC-SCC-----SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhC-CCC-----CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 4566776666666431 111 0111222334444444444412 22 358999999999999999983111 1
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC----CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHH--
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL-- 156 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~----~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~-- 156 (397)
.++||+|+++.++|+++...+... |.+++.++++ .++.+|+++|++++++++++|++++++||||.++|.+
T Consensus 190 ~~~gd~Viv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l 266 (533)
T 3f6t_A 190 LKKGDKIAINEPIFTPYLRIPELK---DYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNAL 266 (533)
T ss_dssp SCTTCEEEEESSCCHHHHTSGGGG---GSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHH
T ss_pred cCCcCEEEEcCCCcHHHHHHHHHc---CCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHH
Confidence 278999999999999987776655 8899998885 3577899999999999999999999999999999965
Q ss_pred -HHHHHHH-hcCcEEEEecccccCcc-cccc--CcccccEEEeccccccCCCC--ceEEEEecC-----CCCcccc----
Q psy8850 157 -EIGELCR-SKGVIFHCDAAQAVGKI-DINI--QNYKVDLMSFSAHKIYGPKG--IGALYIRRN-----PRTRIEA---- 220 (397)
Q Consensus 157 -~i~~l~~-~~gi~livD~a~~~~~~-~~~~--~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~-----~~~~~~~---- 220 (397)
+|+++|+ +||+++|+|++|+.... ...+ ...+.++++.|+||.+|+.| +|+++++++ .+..+.+
T Consensus 267 ~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~ 346 (533)
T 3f6t_A 267 NAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELR 346 (533)
T ss_dssp HHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHH
Confidence 7888888 68999999999983221 1111 11246799999999777666 799999876 2222210
Q ss_pred ---------------------ccccCCccccccCCCCchhHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHH
Q psy8850 221 ---------------------QIHGGGHEYGLRSGTLATHQIVGMG-EAFRLA---------RIEMKEELKRILFLQKRL 269 (397)
Q Consensus 221 ---------------------~~~~~~~~~~~~~~~~~~~~~~~l~-~al~~~---------~~~~~~~~~~~~~~~~~l 269 (397)
.............++.+.....++. .++..+ ..++++.+++++++++.+
T Consensus 347 ~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l 426 (533)
T 3f6t_A 347 QLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQL 426 (533)
T ss_dssp HHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 0000001111223334444444321 122222 246778888999999999
Q ss_pred HHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----------------CChHHHHHHhC---CcEecccCccCCCCCChh
Q psy8850 270 YNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESLLMAIK---DIAVSSGSACTSASLEPS 329 (397)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~ 329 (397)
.+.|. ++ +.+..+.. +..+++.++. .+..++...+. ||.+.+|..|..+
T Consensus 427 ~~~L~--~~-~~~~~~~~---g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~----- 495 (533)
T 3f6t_A 427 HDAMQ--AP-KDETDTNT---HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK----- 495 (533)
T ss_dssp HHHHT--CC-CCCSTTBC---CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS-----
T ss_pred HHhcC--CC-ccccCCCc---eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC-----
Confidence 99985 33 33222222 3445555542 24445554442 8999999877641
Q ss_pred hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 330 ~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
.+++||+++. .+++++++++++|.++++++.+
T Consensus 496 -------------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 496 -------------PGELRVSQAN-LPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp -------------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3799999975 5799999999999999988765
No 166
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.96 E-value=2.1e-27 Score=226.26 Aligned_cols=334 Identities=13% Similarity=0.132 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH-----hhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA-----HFY 82 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~-----~~~ 82 (397)
..++++++++.+.+... .+..+ ....++++.++++++.+ ++++++|||+|+.+++.++. ...
T Consensus 40 ~~~~~~~~a~~~~~~~~-------~~~~~----~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~al~~l~~~~~~~~~ 106 (437)
T 3bb8_A 40 VIGTKELQLMVEASLDG-------WLTTG----RFNDAFEKKLGEYLGVP--YVLTTTSGSSANLLALTALTSPKLGVRA 106 (437)
T ss_dssp CCCHHHHHHHHHHHHHC-------CCBSC----HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCGGGGGGS
T ss_pred CCCHHHHHHHHHHHHcC-------CcCCC----hHHHHHHHHHHHHHCCC--cEEEeCCHHHHHHHHHHHhhhccccccc
Confidence 35688999998888652 12211 36788999999999987 68889999999999999872 000
Q ss_pred ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHH
Q psy8850 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l 161 (397)
.++|++|+++.++|+++...+... |.+++.++.++ ++.+|++++++++++++++|++++ ++|...++++|.++
T Consensus 107 ~~~gd~Vi~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l 180 (437)
T 3bb8_A 107 LKPGDEVITVAAGFPTTVNPTIQN---GLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH---TLGNLFDLAEVRRV 180 (437)
T ss_dssp CCTTCEEEECSSSCHHHHHHHHHT---TCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---CCCChhcHHHHHHH
Confidence 278899999999999999888766 99999999875 688999999999999999999875 36777999999999
Q ss_pred HHhcCcEEEEecccccCccccccCccc--ccEEEecccc---ccCCCCceEEEEecCCCCccccccccCCcc--------
Q psy8850 162 CRSKGVIFHCDAAQAVGKIDINIQNYK--VDLMSFSAHK---IYGPKGIGALYIRRNPRTRIEAQIHGGGHE-------- 228 (397)
Q Consensus 162 ~~~~gi~livD~a~~~~~~~~~~~~~~--~d~~~~s~~K---~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~-------- 228 (397)
|+++|+++|+|++|+.|... +...++ .|++++|++| +.|+. .|+++.+++..........+++..
T Consensus 181 ~~~~~~~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k~l~~g~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (437)
T 3bb8_A 181 ADKYNLWLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAKHITMGE-GGAVFTQSAELKSIIESFRDWGRDCYCAPGCD 258 (437)
T ss_dssp HHHHTCEEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTSSSCCSS-CEEEEESCHHHHHHHHHHHBTTBCC-------
T ss_pred HHHcCCEEEEECccccCceE-CCeecccccCEEEEECcCCcCCCCCC-eEEEEeCCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999999999977654 443344 7888888644 44443 488777754333211110000000
Q ss_pred --------------------------ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q psy8850 229 --------------------------YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282 (397)
Q Consensus 229 --------------------------~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 282 (397)
.++..+..+....+++ ++++. +.+..++.+++.+++.+.|++ ++++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l-~~l~~----~~~~~~~~~~~~~~l~~~L~~-~~g~~~ 332 (437)
T 3bb8_A 259 NTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL-AQLER----IEEFVEKRKANFKYLKDALQS-CADFIE 332 (437)
T ss_dssp ---------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHGGG-GTTTEE
T ss_pred cccccccccccccccccccccccccccCcccCCCHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHhhc-cCCccc
Confidence 0111112233333333 23332 244555668888999999988 766555
Q ss_pred eCCCC-CC--CCceEEEEec---CCChHHHHHHhC--CcEecccCc--cCCCCCChhhH------HHhhCCCccccCceE
Q psy8850 283 NGDMN-NR--IPHNLNISFN---FIEGESLLMAIK--DIAVSSGSA--CTSASLEPSYV------LRALGCNDELAHSSI 346 (397)
Q Consensus 283 ~~~~~-~~--~~~~~~~~~~---~~~~~~~~~~l~--~i~~~~g~~--~~~~~~~~~~~------~~~~g~~~~~~~~~i 346 (397)
..... .. ....+.+.++ +.+..++.+.|. ||.++.+.. +.. .|... +..++.......+.|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~l 409 (437)
T 3bb8_A 333 LPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTR---QPYFHDVKYRVVGELTNTDRIMNQTF 409 (437)
T ss_dssp CCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGG---SGGGSSCCCEECSCCHHHHHHHHHEE
T ss_pred cCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCccccc---CchhhccCccccCCCcHHHHHhcCEE
Confidence 43211 11 1123344444 356778888886 888887643 110 01000 001111112234679
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 347 RFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 347 Ri~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
||+++..+|++||++++++|+++++
T Consensus 410 rl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 410 WIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988753
No 167
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.96 E-value=1.9e-27 Score=223.67 Aligned_cols=307 Identities=13% Similarity=0.114 Sum_probs=217.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
+++|+.+++++.+.+.... +..+ .+ ..+...++++.++++++.+++++++++|+++|+.+++.++... .++
T Consensus 60 g~~~~~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~--~~~ 130 (395)
T 1vef_A 60 GHGNPEVVEAVKRQAETLM-AMPQ-TL-----PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH--TGR 130 (395)
T ss_dssp CBTCHHHHHHHHHHHHHCC-CCCT-TS-----CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH--HSC
T ss_pred CCCCHHHHHHHHHHHHhCC-CCcc-cc-----CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHH--hCC
Confidence 4578999999999987632 2111 11 2346788999999999887778999999999999999876311 256
Q ss_pred CEEEEcCCCChhhHH-HHHHHhhCCcE------------EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850 87 KHIITVQTEHKSVLD-SIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 153 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~-~~~~~~~~g~~------------v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 153 (397)
++|++.++.|++... .+... |.+ +..++. .|++++++++++++++|++++++||||.+.
T Consensus 131 ~~vi~~~~~y~~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 202 (395)
T 1vef_A 131 KKFVAAMRGFSGRTMGSLSVT---WEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVRP 202 (395)
T ss_dssp CEEEEETTCCCCSSHHHHHTC---CCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSEE
T ss_pred CeEEEEcCCcCCCchhhhhhc---CCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCEEEEEEeCccCCCCccC
Confidence 888888888865443 44332 332 333432 489999999998999999998899999988
Q ss_pred c----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccc
Q psy8850 154 P----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH 223 (397)
Q Consensus 154 ~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~ 223 (397)
| +++|.++|++||++||+|++|+ ++.. +.+.....+|++ |++| +.++.++|+++++++..+.+....
T Consensus 203 ~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~- 279 (395)
T 1vef_A 203 ATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG- 279 (395)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS-
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC-
Confidence 8 9999999999999999999998 3211 122223356776 6689 555556899999876444443310
Q ss_pred cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecCC
Q psy8850 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFI 301 (397)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 301 (397)
. ....+.+...+.+..++++.+.+ .++.+++.++++++.+.|++ ++. +..... .+.++++.++.
T Consensus 280 -----~-~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~g~~~~~~~~~- 345 (395)
T 1vef_A 280 -----H-GTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREVRG----MGLMVGLELKE- 345 (395)
T ss_dssp -----S-CCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEEEE----ETTEEEEEESS-
T ss_pred -----c-CCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCceEEEEE----EEEEEEEEEcC-
Confidence 0 11223455666666678877654 45778888999999999988 542 111111 14567777764
Q ss_pred ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
+..++.+.|. ||.+.++. .+++||+++..++++++++++++|++++
T Consensus 346 ~~~~l~~~l~~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 346 KAAPYIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp CSHHHHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3556666654 78777641 3789999988899999999999998875
No 168
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.96 E-value=5.1e-29 Score=234.43 Aligned_cols=316 Identities=14% Similarity=0.074 Sum_probs=215.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh---C---CCCCcEEE--eCChhHHHHHH
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---Y---ADPREIIW--TSGATESNNLA 74 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~---~~~~~i~~--~~g~t~a~~~~ 74 (397)
..+..++++.+.+++.+.+.... . . .|. ......++++.+++++ + +++++|++ |+|+++|++++
T Consensus 39 ~~~~~~~~~~v~~a~~~~~~~~~--~-~-~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~ 110 (396)
T 2q7w_A 39 ETGKTPVLTSVKKAEQYLLENET--T-K-NYL----GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVA 110 (396)
T ss_dssp TTSCCCCCHHHHHHHHHHHHHCC--C-C-CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred CCCCccCcHHHHHHHHhhcCccc--c-c-CCC----CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHH
Confidence 34445778999999988875411 0 0 111 1234577888888887 2 24678988 99999999999
Q ss_pred HHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC---CceEEEEecccCcc
Q psy8850 75 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEI 149 (397)
Q Consensus 75 l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~t 149 (397)
+.++... .+||+|++..++|+++...+... |.+++.+|.+ +++.+|++++++++++ +++++++++++|||
T Consensus 111 ~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~npt 185 (396)
T 2q7w_A 111 ADFLAKN--TSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT 185 (396)
T ss_dssp HHHHHHH--SCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTT
T ss_pred HHHHHHh--CCCCEEEEcCCCchhHHHHHHHc---CCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence 8866421 48899999999999998887776 9999999985 5677899999999975 47788999999999
Q ss_pred ccccc---HHHHHHHHHhcCcEEEEecccccCcc-------ccc-cCc-ccccEEEeccccccCCCC--ceEEEE---ec
Q psy8850 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYI---RR 212 (397)
Q Consensus 150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~~-------~~~-~~~-~~~d~~~~s~~K~~g~~g--~g~~~~---~~ 212 (397)
|.++| +++|+++|++||+++|+|++|+.... ++. +.. .+.++++.|++|.+|+.| +|++++ ++
T Consensus 186 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~ 265 (396)
T 2q7w_A 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADS 265 (396)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCH
Confidence 99987 45799999999999999999874321 111 111 135688999999777656 699887 33
Q ss_pred CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEe
Q psy8850 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EIYIN 283 (397)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~ 283 (397)
+..+.+...+... .....++++.....+..++++.. .+++++..+++.++++++.+.|++ +. ++.+.
T Consensus 266 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 341 (396)
T 2q7w_A 266 ETVDRAFSQMKAA---IRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDFSFI 341 (396)
T ss_dssp HHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCCTHH
T ss_pred HHHHHHHHHHHHH---HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccee
Confidence 2111221111000 01112334555555555666532 346777888999999999999988 53 24433
Q ss_pred CCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHH
Q psy8850 284 GDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF 361 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~ 361 (397)
.+.. +.++++. .+...+...+. ||.+.+ .+||+++. .+++++++
T Consensus 342 ~~~~---~~~~~~~---~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~-~~~e~i~~ 387 (396)
T 2q7w_A 342 IKQN---GMFSFSG---LTKEQVLRLREEFGVYAVA---------------------------SGRVNVAG-MTPDNMAP 387 (396)
T ss_dssp HHCC---SSEEECC---CCHHHHHHHHHHHCEECCT---------------------------TCEEEGGG-CCTTTHHH
T ss_pred cCCC---ceEEEec---CCHHHHHHHHHhcCeeecC---------------------------CceEEEee-cCHHHHHH
Confidence 3222 2222322 33444544443 777763 25999985 48999999
Q ss_pred HHHHHHHH
Q psy8850 362 TIKLLKMK 369 (397)
Q Consensus 362 ~~~~l~~~ 369 (397)
++++|+++
T Consensus 388 ~~~~l~~~ 395 (396)
T 2q7w_A 388 LCEAIVAV 395 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 169
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.96 E-value=2.6e-27 Score=223.53 Aligned_cols=314 Identities=14% Similarity=0.136 Sum_probs=207.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHH-HHhhCC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDG 110 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~~~g 110 (397)
.+.+++...+...++++.+++++|.+ ..++++||++|+.+++.++. ++||+|+++++.|+++...+. .+...|
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 146 (430)
T 3ri6_A 73 GHVYSRSSNPTVEDLEQRLKNLTGAL--GVLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFG 146 (430)
T ss_dssp -------CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTT
T ss_pred CccccCCCCHHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 34444555578899999999999986 46777788999999999887 899999999999999988665 344459
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d 190 (397)
.+++.++.+ |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++++.+.. .+....++|
T Consensus 147 ~~~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~d 220 (430)
T 3ri6_A 147 IEVRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVD 220 (430)
T ss_dssp CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCS
T ss_pred CEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCE
Confidence 999999877 89999999999999999999999999999999999999999999999999997765 344455899
Q ss_pred EEEeccccccCCCC---ceEEEEecCC-CC---ccccc---------cccCC-ccccccCCCCchhHHHHHHHHHHHHHH
Q psy8850 191 LMSFSAHKIYGPKG---IGALYIRRNP-RT---RIEAQ---------IHGGG-HEYGLRSGTLATHQIVGMGEAFRLARI 253 (397)
Q Consensus 191 ~~~~s~~K~~g~~g---~g~~~~~~~~-~~---~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~l~~al~~~~~ 253 (397)
+++.|++|.+|+.| .|+++.+... .. +.... +.... .......+..+....+.+...++
T Consensus 221 iv~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~---- 296 (430)
T 3ri6_A 221 IEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE---- 296 (430)
T ss_dssp EEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH----
T ss_pred EEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh----
Confidence 99999999544322 3665544321 10 00000 00000 00000111222222222212222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-------------CCCc-eEEEEecCC-ChHHHHHHhC--CcEec
Q psy8850 254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-------------RIPH-NLNISFNFI-EGESLLMAIK--DIAVS 316 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~-~~~~~~~~l~--~i~~~ 316 (397)
.+..+.++..+++.++.+.|++ .|.+..+..+.. ..++ +++|.+++. ...++.+.++ ++.+.
T Consensus 297 ~l~~r~~~~~~na~~la~~L~~-~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s 375 (430)
T 3ri6_A 297 TMALRIERSCQNAQELAHWLLS-IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATN 375 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCC
Confidence 3455667778889999999988 787764433321 1134 888888732 2456677776 56667
Q ss_pred ccCccCCCC----CChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 317 SGSACTSAS----LEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 317 ~g~~~~~~~----~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.|..++... +.+. ......|+. ++.||+|++. |+++.+++.|++++
T Consensus 376 ~G~~~sli~~p~~~~h~~~~~~~~~~~g~~----~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 376 IHDNKSLILSPYHVIYALNSHEERLKLEIS----PAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CSCSSCEEECTGGGC---------CGGGSC----TTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCCCceeeCCcccccccCCHHHHHhcCCC----CCeEEEEecc----CCHHHHHHHHHHhh
Confidence 776665321 1111 111233444 4899999996 56666666666654
No 170
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=2.2e-26 Score=217.84 Aligned_cols=311 Identities=15% Similarity=0.116 Sum_probs=209.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV 113 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v 113 (397)
+++...+...++++.+++++|.+ ..+++++|++|+.+++.++. ++||+|+++.++|+++...+.. +...|.++
T Consensus 52 y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~ 125 (421)
T 2ctz_A 52 YSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEV 125 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCEE
T ss_pred ccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCEE
Confidence 33334467889999999999987 44566677999999999876 7899999999999999887743 23349999
Q ss_pred EEe-ccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEeccc-ccCccccccCcccccE
Q psy8850 114 TYL-KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ-AVGKIDINIQNYKVDL 191 (397)
Q Consensus 114 ~~v-~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~-~~~~~~~~~~~~~~d~ 191 (397)
+.+ +.+ |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++| +.+... .....++|+
T Consensus 126 ~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-~~~~~~~Di 199 (421)
T 2ctz_A 126 RFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-RPLAWGAAL 199 (421)
T ss_dssp EECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-CGGGGTCSE
T ss_pred EEECCCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-CccccCCeE
Confidence 999 765 899999999999999999999999999999999999999999999999999 766421 222457999
Q ss_pred EEeccccccC-CC-CceEEEEec-C--C----CCccccccccCCccc--------------cc----cCC-CCchhHHHH
Q psy8850 192 MSFSAHKIYG-PK-GIGALYIRR-N--P----RTRIEAQIHGGGHEY--------------GL----RSG-TLATHQIVG 243 (397)
Q Consensus 192 ~~~s~~K~~g-~~-g~g~~~~~~-~--~----~~~~~~~~~~~~~~~--------------~~----~~~-~~~~~~~~~ 243 (397)
+++|+||+++ +. ++|++++.+ + + ...+.+...++.... ++ ..| ..+....+.
T Consensus 200 ~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~ 279 (421)
T 2ctz_A 200 VTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWV 279 (421)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred EEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999544 43 257677652 1 2 223333222211000 00 011 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHHH
Q psy8850 244 MGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESL 306 (397)
Q Consensus 244 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~ 306 (397)
....++ .+..+.++..++++++.+.|.+ .+++..+..+. ...+.++.|.+++. +...+
T Consensus 280 ~~~~l~----~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~ 354 (421)
T 2ctz_A 280 VLLGME----TLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRF 354 (421)
T ss_dssp HHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHH
T ss_pred HHcCcc----hHHHHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHH
Confidence 222333 2344566667899999999999 88888763222 23466788888652 23445
Q ss_pred HHHhC--CcEecccCccCCC--------CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 307 LMAIK--DIAVSSGSACTSA--------SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 307 ~~~l~--~i~~~~g~~~~~~--------~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
...++ ++.++.|..++.. ...+....+.+|+.+ +.||+|++. +++|.+++.|++++
T Consensus 355 ~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~----~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 355 ISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp HHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred HHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHh
Confidence 55554 4455555433221 011123466777664 899999986 47777777777654
No 171
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.96 E-value=3e-28 Score=229.55 Aligned_cols=319 Identities=13% Similarity=0.054 Sum_probs=208.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC------CCcEEE--eCChhHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD------PREIIW--TSGATESNNL 73 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~i~~--~~g~t~a~~~ 73 (397)
|+.++.+..+.+.+++.+.... ..+. .|.. .....++++.++++++.. +++|++ |+|+++|+.+
T Consensus 40 d~~~~~~~~~~v~~a~~~~~~~-~~~~---~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~ 111 (401)
T 7aat_A 40 DDNGKPYVLNCVRKAEAMIAAK-KMDK---EYLP----IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRV 111 (401)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHT-TCCC---CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred CCCCCEechHHHHHHHHHhccc-cccc---CCCC----CCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHH
Confidence 5666666677899988887653 1111 1211 123567788888887642 678877 9999999999
Q ss_pred HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCc
Q psy8850 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNE 148 (397)
Q Consensus 74 ~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~ 148 (397)
++.++.. +.++||+|++++|+|+++...+... |.+++.+|.+ .++.+|++++++.+. ++++++++++++||
T Consensus 112 ~~~~l~~-~~~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NP 187 (401)
T 7aat_A 112 GANFLQR-FFKFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNP 187 (401)
T ss_dssp HHHHHHH-HCTTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTT
T ss_pred HHHHHHH-hccCCCEEEEcCCCchhHHHHHHHc---CCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCC
Confidence 8876542 2268999999999999998888777 9999999985 367899997777665 57899999999999
Q ss_pred cccccc---HHHHHHHHHhcCcEEEEecccccCccc-c-----cc----CcccccEEEeccccccCCCC--ceEEEEecC
Q psy8850 149 IGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-I-----NI----QNYKVDLMSFSAHKIYGPKG--IGALYIRRN 213 (397)
Q Consensus 149 tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~-~-----~~----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~ 213 (397)
||.+++ +++|+++|++||+++|+|++|...... . .+ ......+++.|+||.+|+.| +|++++...
T Consensus 188 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~ 267 (401)
T 7aat_A 188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR 267 (401)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeC
Confidence 998887 678899999999999999998733211 1 01 12246788999999877666 788887321
Q ss_pred CCC---ccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEE
Q psy8850 214 PRT---RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESIE---EIY 281 (397)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~ 281 (397)
... .+....... .......++.........+++. +.+.+++..++++++++++.+.|++ +. ++.
T Consensus 268 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~ 343 (401)
T 7aat_A 268 DAEEAKRVESQLKIL---IRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK-EGSSHNWQ 343 (401)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCH
T ss_pred CHHHHHHHHHHHHHH---HHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCc
Confidence 111 111111000 0000112222222222223321 1345777888999999999999988 42 233
Q ss_pred EeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850 282 INGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 359 (397)
+..+.. +.+++ .+.+...+...+. ||.+.+ .+||+++.. ++++|
T Consensus 344 ~~~~~~---~~~~~---~~~~~~~~~~ll~~~gi~v~~---------------------------~~Ris~~~~-~~~~i 389 (401)
T 7aat_A 344 HITDQI---GMFCF---TGLKPEQVERLTKEFSIYMTK---------------------------DGRISVAGV-ASSNV 389 (401)
T ss_dssp HHHHCC---SSEEE---CCCCHHHHHHHHHHHCEECCT---------------------------TCEEEGGGC-CTTTH
T ss_pred eecCCc---ceEEe---cCCCHHHHHHHHHhCCEeccC---------------------------CCeEEeccC-ChhhH
Confidence 332222 22222 2344444433333 777753 359999864 45559
Q ss_pred HHHHHHHHHHH
Q psy8850 360 DFTIKLLKMKV 370 (397)
Q Consensus 360 ~~~~~~l~~~~ 370 (397)
++++++|++++
T Consensus 390 ~~~~~~l~~~~ 400 (401)
T 7aat_A 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 172
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.96 E-value=3.7e-28 Score=226.41 Aligned_cols=336 Identities=16% Similarity=0.138 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHH-HHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV-AQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKR 85 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~ 85 (397)
++++++++++.+.+.+-+ ....+ +...++++.+ ++++|. .+++++++|||+|+.+++.++ . ++
T Consensus 13 ~~~~~i~~a~~~~~~~~~------~~~~~----~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~----~~ 77 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHI------YTNYG----PINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKR----KK 77 (377)
T ss_dssp CCGGGGHHHHHHHHHHTC------CSSSC----HHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSC----TT
T ss_pred CCcHHHHHHHHHHHHcCC------cccCC----HHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCC----CC
Confidence 457889999999887621 11111 3468899999 999993 347999999999999999987 5 79
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHh-cCC--ceEEEEecccCcccccccHHHHHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKI-CSD--TILVSVMLVNNEIGVIQPILEIGEL 161 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i-~~~--~~~v~~~~~~~~tG~~~~l~~i~~l 161 (397)
||+|+++.++|+++...+... |.+++.++++ +++.+|++++++++ +++ |++|+ ++|++|...|+++|.++
T Consensus 78 Gd~Vi~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~l 151 (377)
T 3ju7_A 78 GKYALMPSFTFPATPLAAIWC---GLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEEL 151 (377)
T ss_dssp CCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHH
T ss_pred cCEEEECCCCcHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHH
Confidence 999999999999998887766 9999999998 57889999999998 666 88887 45679999999999999
Q ss_pred HHhcCcEEEEecccccCccccccCcc---cccEEEec--cccccCCCCceEEEEecC-CCCccccccccCC------ccc
Q psy8850 162 CRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFS--AHKIYGPKGIGALYIRRN-PRTRIEAQIHGGG------HEY 229 (397)
Q Consensus 162 ~~~~gi~livD~a~~~~~~~~~~~~~---~~d~~~~s--~~K~~g~~g~g~~~~~~~-~~~~~~~~~~~~~------~~~ 229 (397)
|+ ||++||+|++|+.|... +.... ..|+.++| .+|.+++...|+++.+++ +...+......+. ...
T Consensus 152 a~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 229 (377)
T 3ju7_A 152 EK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMM 229 (377)
T ss_dssp HH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSS
T ss_pred Hh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeec
Confidence 99 99999999999987642 22112 13555555 579555434577776543 2233333322211 111
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE--EeCCCCC-CCCceEEEEecC-CChHH
Q psy8850 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY--INGDMNN-RIPHNLNISFNF-IEGES 305 (397)
Q Consensus 230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~-~~~~~~~~~~~~-~~~~~ 305 (397)
++..+..+....+++ ..+ +.++.+.++.+++++++.+.|++ ++++. +...... ....++.+.+++ .+..+
T Consensus 230 g~~~~~~~~~aa~~~-~~l----~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3ju7_A 230 GFNCKMSEYAAAIGI-ATM----KKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQ 303 (377)
T ss_dssp CCBCCCCHHHHHHHH-HHH----HTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHH
T ss_pred cccCCCCHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCChhhHHH
Confidence 222333333333322 222 34566778888888899999988 65431 1111111 112233555553 23778
Q ss_pred HHHHhC--CcEecccCc--cCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 306 LLMAIK--DIAVSSGSA--CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 306 ~~~~l~--~i~~~~g~~--~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+.+.|. ||.++.+.. +.......++....++.......+.||++++..++++|++++++.|++++..
T Consensus 304 l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 304 VIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 888886 887766541 1110000000000111122334689999999999999999999999988765
No 173
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.96 E-value=2.3e-27 Score=223.26 Aligned_cols=310 Identities=17% Similarity=0.186 Sum_probs=215.2
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--c
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--K 84 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--~ 84 (397)
+++++++++++.+++... .+..+ .+ ..+...++++.+++++|. +++++++||++|+.+++.++..... +
T Consensus 55 g~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~gg~~a~~~al~~~~~~~~~~~ 125 (397)
T 2ord_A 55 GHSHPRLVEAIKDQAEKL-IHCSN-LF-----WNRPQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKKS 125 (397)
T ss_dssp CBTCHHHHHHHHHHHHHC-SCCCT-TS-----EEHHHHHHHHHHHHTTTS--CEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc-ccCcc-cc-----CCHHHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 346899999999998763 22221 11 234678899999999984 5899999999999999997752110 0
Q ss_pred C-CCEEEEcCCCChhhHH-HHHHHhhCCcE------------EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccc
Q psy8850 85 R-GKHIITVQTEHKSVLD-SIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 150 (397)
Q Consensus 85 ~-g~~vl~~~~~~~s~~~-~~~~~~~~g~~------------v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG 150 (397)
+ +++|++.++.|++... ++... |.+ +..+|.+ |+++|++++++++++|++++++||||
T Consensus 126 ~~~~~vi~~~~~yh~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG 197 (397)
T 2ord_A 126 EKKYRILSAHNSFHGRTLGSLTAT---GQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVCAVFLEPIQGESG 197 (397)
T ss_dssp TTCCEEEEEBTCCCCSSHHHHHHS---BCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEEEEEECSEECTTT
T ss_pred CCCceEEEEcCCcCCCchhhhhcc---CChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeEEEEEecccCCCC
Confidence 3 4678888777755443 55444 433 6667653 89999999999999999999999999
Q ss_pred c-cc---cHHHHHHHHHhcCcEEEEecccc-cCcc--ccccCcc--cccEEEecccc-ccCCCCceEEEEecCCCCcccc
Q psy8850 151 V-IQ---PILEIGELCRSKGVIFHCDAAQA-VGKI--DINIQNY--KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA 220 (397)
Q Consensus 151 ~-~~---~l~~i~~l~~~~gi~livD~a~~-~~~~--~~~~~~~--~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~ 220 (397)
. ++ ++++|+++|++||+++|+|++|+ ++.. +..+..+ .+|++ |++| +.++.++|+++++++.. .+..
T Consensus 198 ~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~ 274 (397)
T 2ord_A 198 IVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEP 274 (397)
T ss_dssp CEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCT
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCC
Confidence 8 44 47899999999999999999997 2211 1111112 36776 5569 44444589999988765 4432
Q ss_pred ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEE
Q psy8850 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS 297 (397)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 297 (397)
...+ ...+.+...+++..++++.+.+ +++.++++++++++.+.|++. ++.+....+ . +.++.+.
T Consensus 275 ~~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~---g~~~~~~ 341 (397)
T 2ord_A 275 GDHG-------TTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG-M---GLMIGIQ 341 (397)
T ss_dssp TSSC-------CSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-E---TTEEEEE
T ss_pred CCcC-------CCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE-E---eEEEEEE
Confidence 1111 1123455566666677776543 457788888888888888772 232221211 1 4566777
Q ss_pred ecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 298 FNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 298 ~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
++. .+..++.+.|. ||.+.++. ++++||+++...+++++++++++|++++++
T Consensus 342 ~~~~~~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 342 FREEVSNREVATKCFENKLLVVPAG-----------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp ECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ECChHHHHHHHHHHHHCCCEEccCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 764 34677777775 88887651 278999998888999999999999988753
No 174
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.96 E-value=1.6e-28 Score=232.31 Aligned_cols=321 Identities=14% Similarity=0.075 Sum_probs=218.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC-----CCCcEEE--eCChhHHHHHH
Q psy8850 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-----DPREIIW--TSGATESNNLA 74 (397)
Q Consensus 3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~-----~~~~i~~--~~g~t~a~~~~ 74 (397)
..+..++++.+.+++.+.+.. ... .+.+ .......++++.+++++ +. ++++|++ |+|+++|++++
T Consensus 43 ~~~~~~~~~~v~~a~~~~~~~-~~~----~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~ 115 (412)
T 1ajs_A 43 DDCQPWVLPVVRKVEQRIANN-SSL----NHEY--LPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIG 115 (412)
T ss_dssp TTSCCCCCHHHHHHHHHHHTC-TTC----CCCC--CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHhhhC-hhh----ccCC--CCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHH
Confidence 333456779999999887732 101 1111 11224578899999988 53 6678999 99999999999
Q ss_pred HHHhHhhhccCC-----CEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccC--CCCCCCHHHHHHHhcC---CceEEEEe
Q psy8850 75 IKGAAHFYKKRG-----KHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPK--NNGLITLSQLEEKICS---DTILVSVM 143 (397)
Q Consensus 75 l~~l~~~~~~~g-----~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~ 143 (397)
+..+... ++| |+|+++.++|+++...+... |.+ ++.++.+ +++.+|++++++++++ ++++++++
T Consensus 116 ~~~~~~~--~~g~~~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~ 190 (412)
T 1ajs_A 116 AEFLARW--YNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHA 190 (412)
T ss_dssp HHHHHHH--SSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEES
T ss_pred HHHHHHh--CcCcCCCCCeEEEcCCCcHHHHHHHHHc---CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEEC
Confidence 6533211 578 99999999999998877766 888 9999884 5567899999999875 67888899
Q ss_pred cccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc--------ccc-cC-cccccEEEeccccccCCCC--ceEE
Q psy8850 144 LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------DIN-IQ-NYKVDLMSFSAHKIYGPKG--IGAL 208 (397)
Q Consensus 144 ~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--------~~~-~~-~~~~d~~~~s~~K~~g~~g--~g~~ 208 (397)
+++||||.++| +++|+++|++||+++|+|++|..... ++. +. ..+.++++.|+||.+|+.| +|++
T Consensus 191 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~ 270 (412)
T 1ajs_A 191 CAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNL 270 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEE
Confidence 99999999987 46799999999999999999763211 111 11 1134588999999777666 7999
Q ss_pred EE---ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q psy8850 209 YI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE- 278 (397)
Q Consensus 209 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~- 278 (397)
++ +++..+.+...+.. ......++++.....++.++++.. .+++++..++++++++++.+.|++ ++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~ 346 (412)
T 1ajs_A 271 TVVAKEPDSILRVLSQMQK---IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LKT 346 (412)
T ss_dssp EEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred EEecCCHHHHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCC
Confidence 98 54322222111100 011112334555566666777643 346788899999999999999998 54
Q ss_pred --cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850 279 --EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 354 (397)
Q Consensus 279 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 354 (397)
++.+..+.. +.++++ +.+...+...+. ||.+.+ .+||+++. .
T Consensus 347 ~~~~~~~~~~~---~~~~~~---~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~-~ 392 (412)
T 1ajs_A 347 PGTWNHITDQI---GMFSFT---GLNPKQVEYLINQKHIYLLP---------------------------SGRINMCG-L 392 (412)
T ss_dssp SSCCHHHHHCC---SSEEEC---CCCHHHHHHHHHTTCEECCT---------------------------TSEEEGGG-C
T ss_pred CCCeeEEcCCC---ceEEEe---CCCHHHHHHHHHhCCEEecC---------------------------CcEEEeee-C
Confidence 344433322 222222 233444444442 777753 25999984 4
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy8850 355 TEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 355 ~~~~i~~~~~~l~~~~~~~ 373 (397)
+++++++++++|+++++++
T Consensus 393 ~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 393 TTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988653
No 175
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.96 E-value=9.8e-29 Score=233.76 Aligned_cols=316 Identities=12% Similarity=0.054 Sum_probs=216.8
Q ss_pred CCCCCCCCCHHHHHHHHH-HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C-----CCCCcEEE--eCChhHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIP-YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y-----ADPREIIW--TSGATESNN 72 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-----~~~~~i~~--~~g~t~a~~ 72 (397)
|+++.+++++.+.+++.+ .+... .. . .|. ......++++.+++++ + +++++|++ |+|+++|++
T Consensus 41 d~~~~~~~~~~v~~a~~~~~~~~~--~~-~-~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~ 112 (412)
T 1yaa_A 41 DDNGKPWVLPSVKAAEKLIHNDSS--YN-H-EYL----GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALH 112 (412)
T ss_dssp CTTSCBCCCHHHHHHHHHHHTCTT--CC-C-CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHhhhcCcc--cc-c-CCC----CCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHH
Confidence 556666788999999998 76521 00 0 121 1224577888888887 3 25678999 999999999
Q ss_pred HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-C-CCCCCCHHHHHHHhcCC---ceEEEEecccC
Q psy8850 73 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-K-NNGLITLSQLEEKICSD---TILVSVMLVNN 147 (397)
Q Consensus 73 ~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~i~~~---~~~v~~~~~~~ 147 (397)
+++..+... .+||+|+++.++|+++...+... |.+++.+|. + .++.+|+++++++++++ +.++++++++|
T Consensus 113 ~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~n 187 (412)
T 1yaa_A 113 ISAKFFSKF--FPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN 187 (412)
T ss_dssp HHHHHHHHH--CTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred HHHHHHHHh--CCCCEEEEeCCCCccHHHHHHHc---CceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 985432211 58899999999999998776665 999999998 4 36779999999998753 45666699999
Q ss_pred ccccccc---HHHHHHHHHhcCcEEEEecccccCcc--------cc-ccCccc----ccEEEeccccccCCCC--ceEEE
Q psy8850 148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------DI-NIQNYK----VDLMSFSAHKIYGPKG--IGALY 209 (397)
Q Consensus 148 ~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--------~~-~~~~~~----~d~~~~s~~K~~g~~g--~g~~~ 209 (397)
|||.++| +++|+++|++||+++|+|++|+.... ++ ++...+ .++++.|++|.+|+.| +|+++
T Consensus 188 PtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~ 267 (412)
T 1yaa_A 188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH 267 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEE
Confidence 9999987 45789999999999999999963211 12 222112 4688999999777766 68887
Q ss_pred --E-----ecC----CCCccccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q psy8850 210 --I-----RRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNG 272 (397)
Q Consensus 210 --~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~ 272 (397)
+ +++ ....+.... ....++++.....++.++++.. .+++++..++++++++++.+.
T Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (412)
T 1yaa_A 268 LALTKQAQNKTIKPAVTSQLAKII-------RSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDH 340 (412)
T ss_dssp EECCSCTTHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHHH-------hhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 332 222222211 1112344555556666677643 346788899999999999999
Q ss_pred HhhhcC---cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850 273 LMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (397)
Q Consensus 273 l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (397)
|++ ++ ++.+..+.. +.++++ +.+...+...+. ||.+.+ ++|
T Consensus 341 L~~-~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~l~~~gi~v~~---------------------------~~R 386 (412)
T 1yaa_A 341 LVK-LGTPGNWDHIVNQC---GMFSFT---GLTPQMVKRLEETHAVYLVA---------------------------SGR 386 (412)
T ss_dssp HHH-HTCSSCCTHHHHCC---SSEEEC---CCCHHHHHHHHHHHCEECCT---------------------------TSE
T ss_pred HHh-hCCCCCeeeeccCc---eEEEee---CCCHHHHHHHHHhCCEEecc---------------------------CcE
Confidence 988 54 354443322 222222 344555544442 776652 469
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 348 FTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 348 i~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
|+++. .+++++++++++|+++++.
T Consensus 387 is~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 387 ASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 99985 5899999999999998764
No 176
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.96 E-value=7.3e-28 Score=231.53 Aligned_cols=343 Identities=18% Similarity=0.186 Sum_probs=218.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
|+.+..+. +.+.+++.+.+... .. .|. ......+++++++++++.+ ++++|+|||+|+.+++.++...
T Consensus 47 D~~~~~~~-~~v~~a~~~~~~~~----~~-~y~----~~~~~~~l~~~la~~~~~~--~v~~t~ggt~A~~~al~~~~~~ 114 (467)
T 1ax4_A 47 DLLTDSGT-NAMSDHQWAAMITG----DE-AYA----GSRNYYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKY 114 (467)
T ss_dssp ECSCSSSC-CCEEHHHHHHHHTC----CC-CSS----SCHHHHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHH
T ss_pred ecccCcCC-HHHHHHHHHHHhhc----cc-ccc----cCccHHHHHHHHHHHcCCC--cEEEcCCcHHHHHHHHHHHHHh
Confidence 45444444 67777777766431 01 121 1235678899999999874 8999999999999999988721
Q ss_pred hccCCCE---EEEcCCCChhhHHHHHHHhhCCcEEEEeccC----------CCCCCCHHHHHHHhcC----CceEEEEec
Q psy8850 82 YKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK----------NNGLITLSQLEEKICS----DTILVSVML 144 (397)
Q Consensus 82 ~~~~g~~---vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~----------~~~~~d~~~l~~~i~~----~~~~v~~~~ 144 (397)
...+||+ |+++.+.|.++...+... |.+++.++.+ .++.+|+++|++++++ ++++|++++
T Consensus 115 ~~~~Gd~~~~viv~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~ 191 (467)
T 1ax4_A 115 KQKEGKAKNPVFISNFHFDTTAAHVELN---GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTV 191 (467)
T ss_dssp HHHTTCCSSCEEEESSCCHHHHHHHHHT---TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred hccCCCccceEEEeccccchhhHHHhcc---CCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEec
Confidence 1118888 888855556666666655 8888776542 1456899999999974 689999999
Q ss_pred ccCcc-ccccc---HHHHHHHHHhcCcEEEEeccccc-----------CccccccCc------ccccEEEeccccccCCC
Q psy8850 145 VNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQN------YKVDLMSFSAHKIYGPK 203 (397)
Q Consensus 145 ~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~-----------~~~~~~~~~------~~~d~~~~s~~K~~g~~ 203 (397)
++||+ |.++| +++|+++|++||++||+|+++.+ +....++.. ..+|++++|+||.+|++
T Consensus 192 ~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~ 271 (467)
T 1ax4_A 192 TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN 271 (467)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS
T ss_pred cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC
Confidence 99999 78776 57899999999999999998664 221222111 13688999999966654
Q ss_pred -CceEEEEe-c-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850 204 -GIGALYIR-R-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI 280 (397)
Q Consensus 204 -g~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 280 (397)
| |+++.+ + +....+....... ......++.+...+.++..+++...+ .+..++..++++++.+.|.+ .++
T Consensus 272 ~G-g~~~~~d~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~--~~~ 344 (467)
T 1ax4_A 272 IG-GLVAIRDNEEIFTLARQRCVPM--EGFVTYGGLAGRDMAAMVQGLEEGTE--EEYLHYRIGQVKYLGDRLRE--AGI 344 (467)
T ss_dssp SC-EEEEESSCHHHHHHHHHHHHHH--TCSTTTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHH--TTC
T ss_pred cc-eEEEeCCHHHHHHHHHhhcccc--ccccccCCccchHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHh--CCC
Confidence 4 666666 3 3433332221100 01112234444444444445543322 12333444667888888887 466
Q ss_pred EEeCCCCCCCCceEEEE-------ec--CCChHHHHHHh-C--CcEecc-cCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850 281 YINGDMNNRIPHNLNIS-------FN--FIEGESLLMAI-K--DIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIR 347 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~l-~--~i~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (397)
.+..+.. +..+++. ++ +.+..++...| . ||.+.+ |..+.... + ..|.......+++|
T Consensus 345 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~--~-----~~g~~~~~~~~~iR 414 (467)
T 1ax4_A 345 PIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD--P-----ATGEQKHADMEFMR 414 (467)
T ss_dssp CBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC--T-----TTCSBCCCSCCEEE
T ss_pred CcccCCC---ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc--c-----ccccccccccceEE
Confidence 5554332 3455555 32 12356777777 4 899888 54321100 0 00111111237899
Q ss_pred EeeCC-CCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 348 FTIGR-FTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 348 i~~~~-~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
|+++. .++++++++++++|+++++++++.
T Consensus 415 ls~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 444 (467)
T 1ax4_A 415 LTIARRVYTNDHMDYIADALIGLKEKFATL 444 (467)
T ss_dssp EECCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred EecccccCCHHHHHHHHHHHHHHHHhhhcC
Confidence 99984 489999999999999999886553
No 177
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=5e-27 Score=222.83 Aligned_cols=337 Identities=18% Similarity=0.178 Sum_probs=217.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhH-HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTA-EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++..++++.+++++.+.+...+ +++.. .+..+... .......++.++++++.+. ..++++||++|+..++.++.
T Consensus 39 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~v~~~~Gs~a~~~al~~~~- 115 (425)
T 3ecd_A 39 ASENIVSRAVLDAQGSVLTNKYAEGYPGK-RYYGGCEFADEVEALAIERVKRLFNAGH-ANVQPHSGAQANGAVMLALA- 115 (425)
T ss_dssp TTCCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC-
T ss_pred cccCCCCHHHHHHHhhhhhcccccCCCcc-hhcCCChHHHHHHHHHHHHHHHHhCCCC-ceeecCchHHHHHHHHHHcc-
Confidence 4555679999999998885433 23332 22222111 1234445688999999874 23458999999999999886
Q ss_pred hhccCCCEEEEcCCCChhhHHHHHH--HhhCCcEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPIL 156 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~~~~~--~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~ 156 (397)
++||+|+++.++|++....... ....+.+++.++.+ +++.+|+++|+++++ +++++|++++++| |...+++
T Consensus 116 ---~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~ 190 (425)
T 3ecd_A 116 ---KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFA 190 (425)
T ss_dssp ---CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHH
T ss_pred ---CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHH
Confidence 7999999999999883322222 11124466677766 457899999999997 5899999998777 5678899
Q ss_pred HHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCcccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYG 230 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~ 230 (397)
+|.++|++||++||+|++|+.+... ..... .+|+++.|+|| +.|+. +|+++.+++ ....+......+
T Consensus 191 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~----- 263 (425)
T 3ecd_A 191 RFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG----- 263 (425)
T ss_dssp HHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc-----
Confidence 9999999999999999998644331 11111 37899999999 55665 588888743 323333322111
Q ss_pred ccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHH
Q psy8850 231 LRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLL 307 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 307 (397)
..++++...+.++..++... .++++++.+++.++++++.+.|.+ .++.+..+.. ...++++.++ ..+...+.
T Consensus 264 -~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 338 (425)
T 3ecd_A 264 -LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGT--DNHLLLVDLRPKGLKGAQVE 338 (425)
T ss_dssp ----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHHHH
T ss_pred -ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCC--CceEEEEEeCCCCCCHHHHH
Confidence 12345556666666666554 356788999999999999999998 5777665322 1456666665 33566676
Q ss_pred HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHHHHHHHHHHHHHHHH
Q psy8850 308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~~~~~~ 373 (397)
..|. ||.+.++..... . ......+.+|++++. ..+++++++++++|+++++..
T Consensus 339 ~~l~~~gi~v~~~~~p~~--~-----------~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 339 QALERAGITCNKNGIPFD--P-----------EKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHTTEECEECCCTTC--S-----------SCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCEecccccCCC--C-----------CCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 6665 888885431110 0 011223689999443 345999999999999998776
No 178
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.96 E-value=2.4e-27 Score=226.39 Aligned_cols=335 Identities=13% Similarity=0.157 Sum_probs=226.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHH-HHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKAR-NEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++..+.+++|++++.+.+...+ ++|.+ .+..+.......+++. +.+++++|++. ..++++||++|+..++.++.
T Consensus 52 ~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~~e~~a~~~la~~~g~~~-~~v~~~sGs~a~~~a~~~~~- 128 (447)
T 3h7f_A 52 ASENFVPRAVLQAQGSVLTNKYAEGLPGR-RYYGGCEHVDVVENLARDRAKALFGAEF-ANVQPHSGAQANAAVLHALM- 128 (447)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHhcCCccccCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCc-eEEEeCCHHHHHHHHHHHhc-
Confidence 4556779999999998886433 33433 2333333334445555 99999999874 23337889999999999887
Q ss_pred hhccCCCEEEEcCCCChhhHH-H--HHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecccCcccccccH
Q psy8850 81 FYKKRGKHIITVQTEHKSVLD-S--IRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 81 ~~~~~g~~vl~~~~~~~s~~~-~--~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l 155 (397)
++||+|+++.++|+++.. . ....+ .+..+..++.+ +++.+|++++++++. .++++|+++.++||++. ++
T Consensus 129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l 202 (447)
T 3h7f_A 129 ---SPGERLLGLDLANGGHLTHGMRLNFSG-KLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DF 202 (447)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHHH-HSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CH
T ss_pred ---CCCCEEEecCcccccccchhhhhhhcC-CeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CH
Confidence 899999999999877321 1 11111 15677777776 567899999999995 47899999888888876 99
Q ss_pred HHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850 156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG 230 (397)
Q Consensus 156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 230 (397)
++|.++|++||+++|+|++|+.|.. ..+.. .++|+++.|+|| +.|+.| |+++.+++....+......
T Consensus 203 ~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~------ 274 (447)
T 3h7f_A 203 AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP------ 274 (447)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT------
T ss_pred HHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC------
Confidence 9999999999999999999864421 11211 257999999999 666775 9999887655544433222
Q ss_pred ccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhc----CcEEEeCCCCCCCCceEEEEecC--CCh
Q psy8850 231 LRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESI----EEIYINGDMNNRIPHNLNISFNF--IEG 303 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~ 303 (397)
+..++++...++++.+++.... ++++++.+++.++++++.+.|.+ . +++.+..... ..+++.+.+.. .+.
T Consensus 275 ~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~ 351 (447)
T 3h7f_A 275 GQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA-PDVAKAGVSVVSGGT--DVHLVLVDLRDSPLDG 351 (447)
T ss_dssp TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS-HHHHHTTCEEGGGSC--SSSEEEEECTTSSCCH
T ss_pred cccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCeEEecCCC--CCCEEEEEcCCCCCCH
Confidence 2234556666777767776553 36788899999999999999987 4 3677664221 13455666643 345
Q ss_pred HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHH
Q psy8850 304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~ 371 (397)
..+...|. ||.+....... ....+...+.+||++... ++++++++++++|.+++.
T Consensus 352 ~~~~~~l~~~GI~v~~~~i~~-------------~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 352 QAAEDLLHEVGITVNRNAVPN-------------DPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp HHHHHHHHHTTEECBC--------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecccCCC-------------CCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 55555554 88776321000 000112237799987643 579999999999887753
No 179
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.95 E-value=5.1e-27 Score=233.34 Aligned_cols=302 Identities=16% Similarity=0.081 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHH-HHHHhhCCcEEEEeccCC
Q psy8850 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKPKN 120 (397)
Q Consensus 42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~-~~~~~~~g~~v~~v~~~~ 120 (397)
.+.++++.+++++|++. .+++++|+++|+.+++.+++ ++||+|+++.++|.++..+ +... |.+++.++.+.
T Consensus 174 ~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~~~l~---Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMA---GGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTT---CCEEEEECEEE
T ss_pred HHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHC---CCEEEEEeCCc
Confidence 57889999999999974 47788888899999999987 8999999999999999876 4433 99999887643
Q ss_pred C-----CCCCHHHH-----HHHhcCC------c----eEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCc-
Q psy8850 121 N-----GLITLSQL-----EEKICSD------T----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK- 179 (397)
Q Consensus 121 ~-----~~~d~~~l-----~~~i~~~------~----~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~- 179 (397)
+ +.+|+++| +++++++ + ++++++++ |++|.+.|+++|+++|++||++|++|++|+.+.
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2 34788888 9998765 5 88999987 589999999999999999999999999997421
Q ss_pred -c-------ccccCccccc----EEEecccc-ccCCCCceEEEEecCCCCc----cccccccCCccccccCCCCchhHHH
Q psy8850 180 -I-------DINIQNYKVD----LMSFSAHK-IYGPKGIGALYIRRNPRTR----IEAQIHGGGHEYGLRSGTLATHQIV 242 (397)
Q Consensus 180 -~-------~~~~~~~~~d----~~~~s~~K-~~g~~g~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (397)
. +++...+++| ++++|+|| +.|+.+.|+++++++.+.. +...... .....+..++++...++
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~-~~~~~~~stsp~~~~ia 403 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN-NSFNLFMSTSPFYPMYA 403 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH-HHHHHHSCSSCCHHHHH
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH-HHHHHhCCCCCcHHHHH
Confidence 1 1222233667 99999999 6777777888888654211 1100000 00012345778888899
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC----------------------------C-----
Q psy8850 243 GMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN----------------------------N----- 288 (397)
Q Consensus 243 ~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------------------------~----- 288 (397)
++.++++.+.. +..++.+++.++.+++++.|.+.++++.+..+.. +
T Consensus 404 al~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 483 (730)
T 1c4k_A 404 ALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEG 483 (730)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccc
Confidence 99889988765 4566778899999999999977457887765421 0
Q ss_pred --C-----CCceEEEEecC------------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850 289 --R-----IPHNLNISFNF------------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (397)
Q Consensus 289 --~-----~~~~~~~~~~~------------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (397)
. .+..+.+..++ .++..+.+.|. ||.+... ....+|
T Consensus 484 ~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----------------------~~~~ir 540 (730)
T 1c4k_A 484 YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----------------------DLNSIL 540 (730)
T ss_dssp CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----------------------CSSEEE
T ss_pred cCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----------------------CCCeEE
Confidence 0 11124555532 45667776665 5554321 237799
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 348 FTIGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
++++..+|++++++++++|.++.+.+.+.
T Consensus 541 ~~~s~g~t~e~i~~Ll~aL~~i~~~~~~~ 569 (730)
T 1c4k_A 541 FLMTPAETPAKMNNLITQLLQLQRLIEED 569 (730)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998877644
No 180
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.95 E-value=7.9e-27 Score=220.17 Aligned_cols=315 Identities=13% Similarity=0.124 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---c
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---K 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~ 84 (397)
..+|.+.+++.+.+....... . . ...+...+++++++++++.+ ++++++||++|+.++++++..... +
T Consensus 55 ~~~p~v~~a~~~~~~~~~~~~-~-~-----~~~~~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~ 125 (406)
T 4adb_A 55 HAHPELREALNEQASKFWHTG-N-G-----YTNEPVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYG 125 (406)
T ss_dssp BTCHHHHHHHHHHHTTCSCCC-T-T-----SCCHHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhccccc-C-C-----cCCHHHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence 358999999999987632211 1 1 12245788999999999865 899999999999999998752100 0
Q ss_pred CC-CEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850 85 RG-KHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 153 (397)
Q Consensus 85 ~g-~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 153 (397)
++ ++|++.++.|+++......+... +..+..+|.+ |+++|++++++++++|+++ |+||+|.+.
T Consensus 126 ~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~-p~np~g~~~ 199 (406)
T 4adb_A 126 SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDDSTCAVIVE-PIQGEGGVV 199 (406)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTTEEEEEEC-SEETTTTSE
T ss_pred CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcCCeEEEEEe-CCcCCCCCc
Confidence 44 88999999998886555554211 1244555543 8999999999999999999 889998765
Q ss_pred -----cHHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccC-CCCceEEEEecCCCCcccccc
Q psy8850 154 -----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQI 222 (397)
Q Consensus 154 -----~l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~ 222 (397)
++++|.++|++||++||+|++|+ ++.. ..+.....+|+++ ++|.++ +.++|+++++++..+.+....
T Consensus 200 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G~~~~~~~~~~~~~~~~ 277 (406)
T 4adb_A 200 PASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVGALLATEECARVMTVGT 277 (406)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHHTCCTTS
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE--echhhcCCCCeEEEEEcHHHHhhhccCC
Confidence 47899999999999999999996 2211 1122233567775 479444 334899999876655554432
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEEEeCCCCCCCCceEEEEec
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFN 299 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
.+. ..+.+.....+..++++.+.. +++.++++++++++.+.|++.. +.+.... ..+.++.+.++
T Consensus 278 ~~~-------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~ 344 (406)
T 4adb_A 278 HGT-------TYGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR----GLGLLIGCVLN 344 (406)
T ss_dssp SCC-------SSTTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE----EETTEEEEEEC
T ss_pred cCC-------CCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEEEEEEEe
Confidence 221 123445556666677776533 5677788888888888887621 2221111 11456677776
Q ss_pred CC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 300 FI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 300 ~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
.. +..++.+.|. |+.+.++. .+++|++++..++++++++++++|++++++++
T Consensus 345 ~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 345 ADYAGQAKQISQEAAKAGVMVLIAG-----------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp TTTTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCcEEeecC-----------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 53 4677777775 88877642 38899998888999999999999999998876
Q ss_pred h
Q psy8850 375 E 375 (397)
Q Consensus 375 ~ 375 (397)
+
T Consensus 402 ~ 402 (406)
T 4adb_A 402 S 402 (406)
T ss_dssp C
T ss_pred h
Confidence 5
No 181
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.92 E-value=1.4e-30 Score=244.71 Aligned_cols=318 Identities=15% Similarity=0.159 Sum_probs=224.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH----hC--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL----IY--ADPREIIWTSGATESNNLAIKGAAHF 81 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~--~~~~~i~~~~g~t~a~~~~l~~l~~~ 81 (397)
++|+.+++++.+.+... .+.+... ..++++.++++ +| .++++|++++|+++|+.+++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~-------~~~y~~~----~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-- 110 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQL-------VYGYTYA----SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-- 110 (392)
Confidence 45788999988877531 1111111 44555555554 45 566789999999999999999887
Q ss_pred hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC--CCCCHHHHHHHhc-CCceEEEEecccCccccccc---
Q psy8850 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP--- 154 (397)
Q Consensus 82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~--- 154 (397)
++|++|++..+.|+++...+... |.+++.+|.+ ++ +.+|+++++++++ +++++|++++++||||.++|
T Consensus 111 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 185 (392)
T 3b1d_A 111 --KEGEAVLINSPVYPPFARSVRLN---NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREV 185 (392)
Confidence 78999999999999998877766 8888888885 32 3589999999997 67899999999999999987
Q ss_pred HHHHHHHHHhcCcEEEEecccccCcc----ccccC---c--ccccEEEeccccccCCCC--ceEEEEecC-CCCcccccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQ---N--YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQI 222 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~---~--~~~d~~~~s~~K~~g~~g--~g~~~~~~~-~~~~~~~~~ 222 (397)
+++|+++|++||+++|+|++|+.... ...+. . .+.++++.|++|.+|..| +|+++++++ ....+....
T Consensus 186 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 265 (392)
T 3b1d_A 186 LEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ 265 (392)
Confidence 78899999999999999999984321 11221 1 345688999999655333 799888754 555554432
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 300 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (397)
.. +..++++.....+..++++...+.+++..+++.++++++.+.|++.++++.+..+.. ..++++.++.
T Consensus 266 ~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~i~~~~~~ 336 (392)
T 3b1d_A 266 LV------NNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQG---TYLIWLDFSDYG 336 (392)
Confidence 21 111233444555555666643445778888899999999999876346766654433 2233455553
Q ss_pred CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
.+..++.+.|. ||.+.+|..|.+ ..++++||+++. +++++++++++|.++++
T Consensus 337 ~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 337 LTDDALFTLLHDQAKVILNRGSDYGS-----------------EGELHARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 34566776662 888888765432 123789999885 68999999999988764
No 182
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.95 E-value=1.5e-27 Score=227.81 Aligned_cols=316 Identities=16% Similarity=0.034 Sum_probs=213.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCC-----CCcEEE--eCChhHHH
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YAD-----PREIIW--TSGATESN 71 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-----~~~i~~--~~g~t~a~ 71 (397)
+|+++++++.+++.+++.+.... ...+. .|. ......++++.+++++ |.+ +++|++ |+|+++|+
T Consensus 60 ~d~~~~~~v~~av~~a~~~~~~~~~~~~~---~Y~----~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al 132 (448)
T 3meb_A 60 RDESGKPWILPAVKEAEAIISSDLSKYNK---EYP----PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSL 132 (448)
T ss_dssp CCTTSCCCCCHHHHHHHHHHHHCTTTTCC---SCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cCCCCCEechHHHHHHHHHHhhcccCCCC---CCC----CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHH
Confidence 36667777778888887766521 11111 111 1223577888888887 876 678999 99999999
Q ss_pred HHHH--HHhHhhhccCCCEEEEcCCCChhhHHHHH----HHhhCCcEEEEecc-CCC--CCCCHHHHHHHhcC---CceE
Q psy8850 72 NLAI--KGAAHFYKKRGKHIITVQTEHKSVLDSIR----KLENDGFRVTYLKP-KNN--GLITLSQLEEKICS---DTIL 139 (397)
Q Consensus 72 ~~~l--~~l~~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~g~~v~~v~~-~~~--~~~d~~~l~~~i~~---~~~~ 139 (397)
++++ .++. .+||+|++++|+|+++...+. .. |.+++.+|. +++ +.+|++++++++++ ++++
T Consensus 133 ~l~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~ 205 (448)
T 3meb_A 133 HIGFEFLHLW----MPKAEFYMPSTTWPNHYGIYDKVFNKL---KVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIF 205 (448)
T ss_dssp HHHHHHHHHH----CTTCCEEEESSCCTHHHHHHHHHHCTT---TSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEE
T ss_pred HHHHHHHHHh----CCCCEEEECCCCCHhHHHHHHhhHHhC---CCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEE
Confidence 8844 4444 689999999999999988877 44 999999998 553 78999999999974 5788
Q ss_pred EEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc-cc-----ccC----cccccEEEeccccccCCCC--
Q psy8850 140 VSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI-DI-----NIQ----NYKVDLMSFSAHKIYGPKG-- 204 (397)
Q Consensus 140 v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~-~~-----~~~----~~~~d~~~~s~~K~~g~~g-- 204 (397)
+++++++||||.+++. ++|+++|++||+++|+|++|..... .. .+. .....+++.|+||.+|+.|
T Consensus 206 v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 285 (448)
T 3meb_A 206 LFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGER 285 (448)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC
T ss_pred EEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccc
Confidence 8999999999999885 5599999999999999999873221 11 111 1134577999999777656
Q ss_pred ceEE--EE--------ec-----CCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHH
Q psy8850 205 IGAL--YI--------RR-----NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRIL 263 (397)
Q Consensus 205 ~g~~--~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~ 263 (397)
+|++ ++ .+ +....+.... +.....++.....+..++++. +.+.+++..+++.
T Consensus 286 iG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 358 (448)
T 3meb_A 286 IGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------RKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIH 358 (448)
T ss_dssp CEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeeeccccccccCCHHHHHHHHHHHHHHH-------hcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 6877 44 32 1211111111 111223444444444455432 1245778889999
Q ss_pred HHHHHHHHHHhhhc--Cc------EEEeCCCCCCCCceEEEEecCCChHHHHHHh-C--CcEecccCccCCCCCChhhHH
Q psy8850 264 FLQKRLYNGLMESI--EE------IYINGDMNNRIPHNLNISFNFIEGESLLMAI-K--DIAVSSGSACTSASLEPSYVL 332 (397)
Q Consensus 264 ~~~~~l~~~l~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~ 332 (397)
++++++.+.|++ + ++ +.+..+.. + + +.+.+.+. ++...+ . ||.+.+|.
T Consensus 359 ~~r~~l~~~L~~-~~~~~~~~~~~~~~~~~~~---g-~--~~~~~~~~-~~~~~ll~~~gV~v~~G~------------- 417 (448)
T 3meb_A 359 RMRSLLHASLAK-RKTPGPGSKGTWDHILTAI---G-M--FTFTGLTP-EHVDYLKEKWSIYLVKAG------------- 417 (448)
T ss_dssp HHHHHHHHHHHH-TTCCCSTTTCCCTHHHHCC---S-S--EEECCCCH-HHHHHHHHHHCEEECSGG-------------
T ss_pred HHHHHHHHHHHh-hCCCCcCcccccceeCCCc---e-E--EEecCCCH-HHHHHHHHhCCEEEeCCC-------------
Confidence 999999999988 4 33 22222211 2 2 22233444 444444 3 88888762
Q ss_pred HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 333 ~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.||+++. .++++|++++++|++++++
T Consensus 418 -------------gRis~a~-~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 418 -------------GRMSMCG-LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp -------------GEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred -------------cEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 2999975 3567799999999999873
No 183
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.9e-26 Score=217.20 Aligned_cols=309 Identities=15% Similarity=0.116 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (397)
Q Consensus 10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~ 88 (397)
|+.+++++.+++......... .+ ..+...++++.++++++.+ +++|++++|+++|++++++++.. + +|++
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~-~--~~~~ 131 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAAN-DF-----YNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-T--GRKY 131 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCS-CS-----CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHT-T--SCCE
T ss_pred CHHHHHHHHHHHhhCcccccc-cc-----CCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHH-h--hCCc
Confidence 799999999998653110000 11 1234577889999999987 77999999999999999997652 1 2789
Q ss_pred EEEcCCCChhhHHHHHHHh------hC-----CcEEEEeccCCCCC----------------CCHHHHH-HHhc-----C
Q psy8850 89 IITVQTEHKSVLDSIRKLE------ND-----GFRVTYLKPKNNGL----------------ITLSQLE-EKIC-----S 135 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~------~~-----g~~v~~v~~~~~~~----------------~d~~~l~-~~i~-----~ 135 (397)
|++.++.|++.......+. +. ...++.+|.+++.. +|+++|+ ++++ +
T Consensus 132 vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 211 (419)
T 2eo5_A 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPE 211 (419)
T ss_dssp EEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGG
T ss_pred EEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCC
Confidence 9999988875554433221 11 13577788765422 3688999 8887 4
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CC
Q psy8850 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KG 204 (397)
Q Consensus 136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g 204 (397)
++++|+++.++|+||.+.+ +++|+++|++||+++|+|++|+ ++.. ..+.....+|+++ ++| +.++ .+
T Consensus 212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~r 289 (419)
T 2eo5_A 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVIT--LAKALGGGIMP 289 (419)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTTSC
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEE--ecccccCCccc
Confidence 6677777766678898776 8999999999999999999998 4322 1222233567764 559 5544 56
Q ss_pred ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850 205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284 (397)
Q Consensus 205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 284 (397)
+|+++++++.. .+ .... .. ....|...+.+..++++...+ +.+++.++++++.+.|++ + +....
T Consensus 290 iG~~~~~~~~~-~~-~~~~------~~-t~~~n~~~~~aa~aal~~~~~----~~~~~~~~~~~l~~~L~~-~--~~~~~ 353 (419)
T 2eo5_A 290 IGATIFRKDLD-FK-PGMH------SN-TFGGNALACAIGSKVIDIVKD----LLPHVNEIGKIFAEELQG-L--ADDVR 353 (419)
T ss_dssp CEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT-S--SSEEE
T ss_pred eEEEEEchHhh-cC-Cccc------CC-CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-h--hhheE
Confidence 89999998765 44 2111 11 123455666666678876543 778899999999999988 4 11111
Q ss_pred CCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850 285 DMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360 (397)
Q Consensus 285 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~ 360 (397)
. . +.++.+.+.. .... +...|. ||.+.++. .+++||+++...++++++
T Consensus 354 ~-~---g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-----------------------~~~lRis~~~~~t~e~i~ 405 (419)
T 2eo5_A 354 G-I---GLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-----------------------RSAIRVIPPLVISEEEAK 405 (419)
T ss_dssp E-E---TTEEEEECSCHHHHHH-HHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHH
T ss_pred e-e---eEEEEEEEecCccHHH-HHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHH
Confidence 1 1 4455666631 1133 666654 88887641 278999999889999999
Q ss_pred HHHHHHHHHHHHH
Q psy8850 361 FTIKLLKMKVKKL 373 (397)
Q Consensus 361 ~~~~~l~~~~~~~ 373 (397)
+++++|+++++++
T Consensus 406 ~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 406 QGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 184
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.95 E-value=1.7e-26 Score=219.36 Aligned_cols=320 Identities=14% Similarity=0.127 Sum_probs=215.6
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCCCCcEEEeCChhHHHHHHHH---HhHhhh
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YADPREIIWTSGATESNNLAIK---GAAHFY 82 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~i~~~~g~t~a~~~~l~---~l~~~~ 82 (397)
+++++.+++++.+.+.... ... ..+...+...++++.|++++ +..+++|++++|+++|+.+++. ++.
T Consensus 56 g~~~~~v~~a~~~~~~~~~-~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~--- 126 (426)
T 1sff_A 56 GHLHPKVVAAVEAQLKKLS-HTC-----FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT--- 126 (426)
T ss_dssp CBTCHHHHHHHHHHTTTCS-CCC-----TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHhCC-Ccc-----ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh---
Confidence 3478999999999886521 111 12233457788999999999 5223789999999999999988 444
Q ss_pred ccCCCEEEEcCCCChhhHH-HHHHHhhC-----Cc-----EEEEeccCC-----CCCCCHHHHHHHhc-----CCceEEE
Q psy8850 83 KKRGKHIITVQTEHKSVLD-SIRKLEND-----GF-----RVTYLKPKN-----NGLITLSQLEEKIC-----SDTILVS 141 (397)
Q Consensus 83 ~~~g~~vl~~~~~~~s~~~-~~~~~~~~-----g~-----~v~~v~~~~-----~~~~d~~~l~~~i~-----~~~~~v~ 141 (397)
+++ +|++.++.|++... .....+.. +. .++.+|.+. ++.+|+++|+++++ +++++|+
T Consensus 127 -~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~ 204 (426)
T 1sff_A 127 -KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIV 204 (426)
T ss_dssp -TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred -CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEE
Confidence 565 88888888876554 44433110 11 266777753 22468999999886 4678888
Q ss_pred EecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccCCCC--ceEEEE
Q psy8850 142 VMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG--IGALYI 210 (397)
Q Consensus 142 ~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~ 210 (397)
+++..++||.+.+ +++|.++|++||++||+|++|+ ++.. ..+.....+|++ |++|.+|+ | +|++++
T Consensus 205 ~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG~~~~ 281 (426)
T 1sff_A 205 IEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLAGVTG 281 (426)
T ss_dssp ECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCEEEEE
T ss_pred EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceEEEEE
Confidence 8654444997776 8999999999999999999998 2211 122222246766 66696555 5 699999
Q ss_pred ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCC
Q psy8850 211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMN 287 (397)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~ 287 (397)
+++..+.+...... . ....+....+++.++++.+.+ ..+.+++.++++++++.|++. ++.+....+ .
T Consensus 282 ~~~~~~~l~~~~~~------~-~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~ 351 (426)
T 1sff_A 282 RAEVMDAVAPGGLG------G-TYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG-L 351 (426)
T ss_dssp EHHHHTTSCTTSBC------C-SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE-E
T ss_pred cHHHHhhhccCCcC------c-CCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-E
Confidence 97655554431111 1 123455666677788887765 245677777888888877661 333332222 1
Q ss_pred CCCCceEEEEecC---------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850 288 NRIPHNLNISFNF---------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356 (397)
Q Consensus 288 ~~~~~~~~~~~~~---------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 356 (397)
+.++++.+.. .+..++...|. ||.+.+|..+ .+++||+++..+++
T Consensus 352 ---g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~---------------------~~~iRi~~~~~~~~ 407 (426)
T 1sff_A 352 ---GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---------------------YNVLRILVPLTIED 407 (426)
T ss_dssp ---TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---------------------SCEEEECCCTTCCH
T ss_pred ---EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC---------------------CCEEEEECCccCCH
Confidence 4566777742 12455666665 8888877421 27899999988999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8850 357 KEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 357 ~~i~~~~~~l~~~~~~~~ 374 (397)
+++++++++|++++++++
T Consensus 408 ~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 408 AQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987764
No 185
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.95 E-value=4.5e-26 Score=214.26 Aligned_cols=313 Identities=17% Similarity=0.172 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---c
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---K 84 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~ 84 (397)
..+|++++++.+.+..... . ......+...+++++++++++ .+++++++||++|+..+++.+...+. .
T Consensus 52 ~~~p~v~~a~~~~~~~~~~-~------~~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~ 122 (395)
T 3nx3_A 52 YNHAKFNAKIKAQVDKLLH-T------SNLYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGV 122 (395)
T ss_dssp BSCHHHHHHHHHHHTTCSC-C------CTTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccc-c------ccccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence 4589999999999876321 1 111224567889999999998 45899999999999999987653211 2
Q ss_pred CCCEEEEcCCCChhhHHHHHHHh----------hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLE----------NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~----------~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 154 (397)
++++|++.++.|++.......+. ..+..+..++.+ |+++|++++++++++|++++++|++|.+.+
T Consensus 123 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~ 197 (395)
T 3nx3_A 123 KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKTCAIILESVQGEGGINPA 197 (395)
T ss_dssp TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTEEEEEEESEECTTSCEEC
T ss_pred CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCCeEEEEEeCccCCCCcccC
Confidence 46899999998877654433221 113456666654 799999999999999999999999999877
Q ss_pred ----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCC-CCccccccc
Q psy8850 155 ----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRIEAQIH 223 (397)
Q Consensus 155 ----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~-~~~~~~~~~ 223 (397)
+++|.++|++||+++|+|++|+ ++.. ..+.....+|++++| | +.++.++|+++++++. .+.+.+...
T Consensus 198 ~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~~~ 275 (395)
T 3nx3_A 198 NKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQKVASNSLEAGDH 275 (395)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHHHHHHHSCTTCC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEchhhhhhhcCCccc
Confidence 8999999999999999999987 3321 112222346776655 9 5444468999998766 445544322
Q ss_pred cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEecC
Q psy8850 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF 300 (397)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
+. ....+....++..++++.+.+ +.+.++.+++.+++++.|.+. ++.+...... +.++.+.++.
T Consensus 276 ~~-------~~~~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----g~~~~~~~~~ 342 (395)
T 3nx3_A 276 GS-------TYGGNPLVCAGVNAVFEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKKRKGL----GFMQGLSLDK 342 (395)
T ss_dssp SS-------CBSCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE----TTEEEEEECT
T ss_pred CC-------CCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE----EEEEEEEeCC
Confidence 21 113345555655577776643 233444444444444444331 4544433221 4566777765
Q ss_pred C-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 301 I-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 301 ~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
. +..++.+.|. |+.+.++. .+++||+++..++++++++++++|++++++
T Consensus 343 ~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 343 SVKVAKVIQKCQENALLLISCG-----------------------ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 5667777765 88877652 389999999889999999999999998753
No 186
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.95 E-value=8.8e-26 Score=214.55 Aligned_cols=316 Identities=16% Similarity=0.140 Sum_probs=210.2
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-c----
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-K---- 83 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~---- 83 (397)
++|.+++++.+++.... ...+ .+ ..+...++++.++++++. +++++++||++|++.+++.+.... +
T Consensus 82 ~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~a~~~~~~~~g~ 152 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLT-ICSR-AF-----FSVPLGICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGYEVKKI 152 (433)
T ss_dssp TCHHHHHHHHHHHTTCS-CCCT-TS-----EEHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhCC-CccC-Cc-----CCHHHHHHHHHHHhhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 78999999999987632 2111 11 234567888999999984 589999999999999999754211 1
Q ss_pred cCC-CEEEEcCCCChhhHHH-HHHHhh----CC-----cEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCcccc
Q psy8850 84 KRG-KHIITVQTEHKSVLDS-IRKLEN----DG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV 151 (397)
Q Consensus 84 ~~g-~~vl~~~~~~~s~~~~-~~~~~~----~g-----~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~ 151 (397)
.+| ++|++.++.|++.... +..... .+ ..+..+|.+ |+++|++++ .+++++|+++++++++|.
T Consensus 153 ~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~ 227 (433)
T 1z7d_A 153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGEAGV 227 (433)
T ss_dssp CTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBSTTTS
T ss_pred CCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCc
Confidence 245 8999999888776443 222210 01 345556543 899999999 578899999988888998
Q ss_pred cc----cHHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcccc
Q psy8850 152 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEA 220 (397)
Q Consensus 152 ~~----~l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~ 220 (397)
+. ++++|.++|++||+++|+|++|+ ++.. ..+.....+|++ |++| +.++ ..+|+++++++..+.+.+
T Consensus 228 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~ 305 (433)
T 1z7d_A 228 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLANDDIMLVIKP 305 (433)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTCCT
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEECHHHHhhhcc
Confidence 76 58999999999999999999997 2221 112222357877 5559 4433 248999998765555443
Q ss_pred ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEE
Q psy8850 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS 297 (397)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 297 (397)
...+ ... ..+...+++..++++.+.+ .++.+++.++++++++.|++. ++.+..... .+.++.+.
T Consensus 306 ~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i~ 372 (433)
T 1z7d_A 306 GEHG------STY-GGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAIE 372 (433)
T ss_dssp TCCC------CTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEE
T ss_pred cccc------ccC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEEE
Confidence 2111 112 3345556666678887654 356778888888888888761 233222211 14566777
Q ss_pred ecCC--ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 298 FNFI--EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 298 ~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
++.. +..++...|. ||.+.++ ..+++|++++..++++++++++++|+++++++
T Consensus 373 ~~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 373 FKNELVNVLDICLKLKENGLITRDV-----------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp ECTTTCCHHHHHHHHHHTTEECCEE-----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EccChhHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 7643 4667777765 8877753 12789999998899999999999999998876
Q ss_pred Hhc
Q psy8850 374 REL 376 (397)
Q Consensus 374 ~~~ 376 (397)
.++
T Consensus 430 ~~~ 432 (433)
T 1z7d_A 430 DER 432 (433)
T ss_dssp C--
T ss_pred Hhh
Confidence 544
No 187
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.95 E-value=3.6e-26 Score=216.46 Aligned_cols=315 Identities=15% Similarity=0.159 Sum_probs=214.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
++.++.+++++.+++.... +..+ .+ ..+...++++.++++++. +++++++||++|++++++++.....
T Consensus 72 G~~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~ggteA~~~al~~~~~~~~~~~ 142 (420)
T 2pb2_A 72 GHCHPALVEALKSQGETLW-HTSN-VF-----TNEPALRLGRKLIDATFA--ERVLFMNSGTEANETAFKLARHYACVRH 142 (420)
T ss_dssp CBTCHHHHHHHHHHHTTCC-CCCT-TS-----CCHHHHHHHHHHHHHSSC--SEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhcc-cccC-cc-----CCHHHHHHHHHHHhhCCC--CeEEEeCCHHHHHHHHHHHHHHHhhhcc
Confidence 3468999999999987632 2211 11 234678899999999984 5899999999999999998763110
Q ss_pred cCC-CEEEEcCCCChhhHHHH-HHHhh----CC-----cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850 84 KRG-KHIITVQTEHKSVLDSI-RKLEN----DG-----FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 84 ~~g-~~vl~~~~~~~s~~~~~-~~~~~----~g-----~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
.+| ++|++.++.|++..... ...+. .+ ..+..+|.+ |+++|++++++++++|++++++|++|.+
T Consensus 143 ~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~~~~vi~~p~~~~gG~~ 217 (420)
T 2pb2_A 143 SPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDHTCAVVVEPIQGEGGVQ 217 (420)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTTEEEEEECSEETTTTSE
T ss_pred CCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccCceEEEEeCCcCCCCee
Confidence 045 58998888887665433 33210 01 125566643 8999999999999999999999988862
Q ss_pred -c---cHHHHHHHHHhcCcEEEEecccc-cCcc--c--cccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc
Q psy8850 153 -Q---PILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI 222 (397)
Q Consensus 153 -~---~l~~i~~l~~~~gi~livD~a~~-~~~~--~--~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~ 222 (397)
+ ++++|.++|++||+++|+|++|+ ++.. . .+.....+|+++ ++| +.++.++|+++++++..+.+....
T Consensus 218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~~~~~l~~~l~~~~ 295 (420)
T 2pb2_A 218 AATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAMLTTQEIASAFHVGS 295 (420)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTCC---
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEEEhHHHHHhhcCCC
Confidence 3 47899999999999999999996 2211 1 122223578775 569 444335899999876544443321
Q ss_pred ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEec
Q psy8850 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFN 299 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
.+ ... ..+....++..++++.+.+ +++.++++++++++.+.|++. ++.+..... . +.++.+.++
T Consensus 296 ~~------~t~-~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~---g~~~~v~~~ 362 (420)
T 2pb2_A 296 HG------STY-GGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG-M---GLLIGAELK 362 (420)
T ss_dssp -C------CEE-CCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-E---TTEEEEEEC
T ss_pred cC------ccc-CcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-c---ceEEEEEEC
Confidence 11 111 3345555666677776643 467788888888888888761 243332222 1 456677775
Q ss_pred CC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 300 FI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 300 ~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.. +..++.+.|. ||.+.++. ++++||+++..++++++++++++|+++++++
T Consensus 363 ~~~~~~~~~l~~~l~~~Gi~v~~~~-----------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 363 PKYKGRARDFLYAGAEAGVMVLNAG-----------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp GGGTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCEEEeCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 42 4667777765 88877652 2789999988899999999999999998764
No 188
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.95 E-value=2.1e-26 Score=219.49 Aligned_cols=322 Identities=12% Similarity=0.071 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
.+|.+++++.+++..... +.......+...+++++++++++... +++++++||++|+..+++.+... .+++
T Consensus 60 ~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~--~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAG------ATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKA--TGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHSCSC------SCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHH--HSCC
T ss_pred CCHHHHHHHHHHHHhccC------ccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHH--hCCC
Confidence 689999999999876321 11112234577889999999997655 68999999999999999975321 2446
Q ss_pred EEEEcCCCChhhHHHHHHHhhCC---c---------EEEEeccCCCCCC-----CHHHHHHHh----cCCceEEEEeccc
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDG---F---------RVTYLKPKNNGLI-----TLSQLEEKI----CSDTILVSVMLVN 146 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g---~---------~v~~v~~~~~~~~-----d~~~l~~~i----~~~~~~v~~~~~~ 146 (397)
+|++.++.|++.......+.... . .+..+|.+..+.. |+++|++++ .+++++|++++++
T Consensus 132 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~ 211 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQ 211 (439)
T ss_dssp EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSB
T ss_pred EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence 67666666655544333221100 0 1233444332222 689999999 5678999999999
Q ss_pred Cccccccc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccCCCCceEEEEecCCCC
Q psy8850 147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT 216 (397)
Q Consensus 147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~ 216 (397)
+++|.+.| +++|.++|++||++||+|++|+ ++. ...+.....+|++ |++| +.++..+|+++++++..+
T Consensus 212 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~~~~ 289 (439)
T 3dxv_A 212 SDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAEILD 289 (439)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHHHHh
Confidence 99999988 9999999999999999999997 221 1222223356777 5569 443335799999977655
Q ss_pred ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCce
Q psy8850 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHN 293 (397)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~ 293 (397)
.+.....+ ... .+...+.+..++++.+.+ +.+.++++++.+++++.|.+. ++.+...... +.+
T Consensus 290 ~~~~~~~~------~t~--~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----g~~ 355 (439)
T 3dxv_A 290 CASAFAMQ------TLH--GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR----GLA 355 (439)
T ss_dssp SCSSSSCC------TTT--TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE----TTE
T ss_pred hhcCCCcC------CCc--ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE----EEE
Confidence 55443211 111 344555555567776654 345556666666666665541 3544433322 345
Q ss_pred EEEEec--------C-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHH
Q psy8850 294 LNISFN--------F-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 362 (397)
Q Consensus 294 ~~~~~~--------~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~ 362 (397)
+.+.+. . ....++.+.+. |+.+.++.. .++++||+++...++++++++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~~~~~~t~e~i~~~ 414 (439)
T 3dxv_A 356 CGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---------------------NGNVLEFTPPLTITETDIHKA 414 (439)
T ss_dssp EEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---------------------TSCEEEECCCTTCCHHHHHHH
T ss_pred EEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEECCCCCCHHHHHHH
Confidence 556552 1 11345555554 888877621 137899999988999999999
Q ss_pred HHHHHHHHHHHHh
Q psy8850 363 IKLLKMKVKKLRE 375 (397)
Q Consensus 363 ~~~l~~~~~~~~~ 375 (397)
+++|+++++++.+
T Consensus 415 l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 415 LDLLDRAFSELSA 427 (439)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 189
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.95 E-value=8.9e-27 Score=217.14 Aligned_cols=308 Identities=13% Similarity=0.052 Sum_probs=204.1
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
.+++++++++++. . +. ++ .....++++.+++++|++ ++++++++||++|+.+++.++
T Consensus 39 ~~~~~~~v~~a~~----~-~~---------~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------ 96 (374)
T 2aeu_A 39 GFLIDEKDKALLN----T-YI---------GS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------ 96 (374)
T ss_dssp CCCCCHHHHHHHT----S-TT---------HH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHH----H-hc---------Cc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------
Confidence 4577889988875 1 11 11 123356777888899983 467999999999999999865
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceE-EEEecccCccc-ccccHHHHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTIL-VSVMLVNNEIG-VIQPILEIGELC 162 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~-v~~~~~~~~tG-~~~~l~~i~~l~ 162 (397)
+||+|+++.++|+++......+...|.+++.+ .|+++++++ ++++++ |++++++|||| ...++++|.++|
T Consensus 97 ~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~ 168 (374)
T 2aeu_A 97 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA 168 (374)
T ss_dssp CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence 68999999998887665444444458898888 289999998 778999 99999999999 888999999999
Q ss_pred HhcCcEEEEecccccCcc-cc-c--cCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850 163 RSKGVIFHCDAAQAVGKI-DI-N--IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (397)
Q Consensus 163 ~~~gi~livD~a~~~~~~-~~-~--~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
++||+++|+|++|+.+.. +. . ...+++|+++.|+|| +.|+ ++|+++++++..+.+...... ..++++
T Consensus 169 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~~~-------~~~~~~ 240 (374)
T 2aeu_A 169 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEGTK-------FGLEAQ 240 (374)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHHHT-------TTCBCC
T ss_pred HHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhhcc-------ccCCCC
Confidence 999999999999885431 11 1 122467999999999 5555 689999997665555433211 112345
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHhhhc---CcEEEeCCCCCCCCceEEEEecCCCh------
Q psy8850 238 THQIVGMGEAFRLARI-EMKEELKRILFL----QKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIEG------ 303 (397)
Q Consensus 238 ~~~~~~l~~al~~~~~-~~~~~~~~~~~~----~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------ 303 (397)
.....++.++++.... .+.+..+..+.. .+.+.+.|.. + .++.+...+. +.+.........
T Consensus 241 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~ 315 (374)
T 2aeu_A 241 PPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERTPT----GFVIKRVYKDDTINIKKL 315 (374)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEECSS----EEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeCCc----eEEEEeecccccccccch
Confidence 5556666667665422 233333333333 4566666655 3 3455433322 222222221111
Q ss_pred HHHH-HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC-CCCHHHHHHHHHHHHHHHHHHH
Q psy8850 304 ESLL-MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 304 ~~~~-~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
.++. ..+. ||.+.+|..+.. ..+++||+++. ..++.++++++++|+++++++.
T Consensus 316 ~~~~~~ll~~~gV~v~~g~~~~~------------------~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 316 IEIGFNLLKNYGIITITVAGMPG------------------ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp HHHHHHHHHHHCEECSTTSSSCS------------------SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEecCCCCCC------------------CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 1143 2332 899988753311 13689999974 2334458999999998887764
No 190
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.95 E-value=7.6e-26 Score=215.09 Aligned_cols=333 Identities=12% Similarity=0.069 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc----
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---- 83 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---- 83 (397)
..+|.+++++.+.+..... ... .....+...+++++++++++.+.++|++++||++|+..+++.+...+.
T Consensus 45 ~~~p~v~~a~~~~~~~~~~-~~~-----~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~ 118 (430)
T 3i4j_A 45 HGRAEVGERMAAQAARLPF-VHG-----SQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGE 118 (430)
T ss_dssp BCCHHHHHHHHHHHHHCCC-CCT-----TTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccc-ccc-----cccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence 3589999999999876321 111 112234677889999999998888999999999999999998763211
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhhCCc------------EEEEeccCCC---CCCCHHHHHHHhc----CCceEEEEec
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLENDGF------------RVTYLKPKNN---GLITLSQLEEKIC----SDTILVSVML 144 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~------------~v~~v~~~~~---~~~d~~~l~~~i~----~~~~~v~~~~ 144 (397)
.++++|++.++.|+++......+..... .+..+|.+.. +..|+++|+++++ +++++|+++.
T Consensus 119 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p 198 (430)
T 3i4j_A 119 PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEP 198 (430)
T ss_dssp TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECS
T ss_pred CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 2367999999999887755444321100 2333443322 2346689999887 5677888888
Q ss_pred ccC-ccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccC-cccccEEEecccc-ccCC-CCceEEEEe
Q psy8850 145 VNN-EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQ-NYKVDLMSFSAHK-IYGP-KGIGALYIR 211 (397)
Q Consensus 145 ~~~-~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~-~~~~d~~~~s~~K-~~g~-~g~g~~~~~ 211 (397)
+++ ++|.+.+ +++|+++|++||++||+|++|+ ++.. ..+.. ...+|++++| | +.++ ..+|+++++
T Consensus 199 ~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~~ 276 (430)
T 3i4j_A 199 VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLAA 276 (430)
T ss_dssp SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEEC
T ss_pred cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEc--ccccCCccccEEEEEC
Confidence 888 9998777 8999999999999999999987 3221 11222 3346777655 9 4433 347999998
Q ss_pred cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcEEEeCCCCC
Q psy8850 212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNN 288 (397)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~ 288 (397)
++..+.+...... ..... ....+...+.+..++++.+.+ +++.++++++.+++++.|.+ .++.+......
T Consensus 277 ~~i~~~~~~~~~~--~~~~~-t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 349 (430)
T 3i4j_A 277 PQVYETVMGGSGA--FMHGF-TYAGHPVSVAAGLSVLDIVER--EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT-- 349 (430)
T ss_dssp HHHHHHHHHTTCB--CCCCC-TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE--
T ss_pred HHHHHHHhccCCc--ccccC-CCCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE--
Confidence 7665554432000 00011 123345555655677876654 23344444444444444433 15666554332
Q ss_pred CCCceEEEEecCCC----------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850 289 RIPHNLNISFNFIE----------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356 (397)
Q Consensus 289 ~~~~~~~~~~~~~~----------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 356 (397)
+.++.+.+.+.+ ..++.+.+. ||.+.++..+.. ...++++||+++...++
T Consensus 350 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~----------------~~~~~~iRi~~~~~~t~ 411 (430)
T 3i4j_A 350 --GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP----------------NGRGDHLLLGPPLSITA 411 (430)
T ss_dssp --TTEEEEEEC------------CHHHHHHHHHHTTEECC---------------------------CEEEECCCTTCCH
T ss_pred --EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC----------------CCCCCEEEEECCCCCCH
Confidence 345556654221 245666665 888887632211 11247899999988999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8850 357 KEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 357 ~~i~~~~~~l~~~~~~~ 373 (397)
+++++++++|+++++++
T Consensus 412 e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 412 AEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 191
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.95 E-value=6.7e-25 Score=209.59 Aligned_cols=331 Identities=13% Similarity=0.098 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC-
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR- 85 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~- 85 (397)
+..+|.+.+++.+++....... . .....+...+++++++++++...+++++++||++|++.+++.+...+..+
T Consensus 59 G~~~p~v~~A~~~~~~~~~~~~-----~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G 132 (448)
T 3dod_A 59 GHRKKELDDAIKKQLGKIAHST-----L-LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132 (448)
T ss_dssp CBSCHHHHHHHHHHHTTCSCCC-----C-SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhccCcc-----c-cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhC
Confidence 3568999999999987631100 0 11123456788999999997666789999999999999999877432123
Q ss_pred ---CCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCCCC-----------CHHHHHHHhc---CCce
Q psy8850 86 ---GKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLI-----------TLSQLEEKIC---SDTI 138 (397)
Q Consensus 86 ---g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~~~-----------d~~~l~~~i~---~~~~ 138 (397)
+++|++.++.|++.......+... ...+..+|.+..... |+++|+++++ ++++
T Consensus 133 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 212 (448)
T 3dod_A 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIA 212 (448)
T ss_dssp CTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEE
Confidence 499999999987766443333110 112344554432222 4889999887 5678
Q ss_pred EEEEeccc-Cccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCce
Q psy8850 139 LVSVMLVN-NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIG 206 (397)
Q Consensus 139 ~v~~~~~~-~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g 206 (397)
+|+++.++ +++|.+.+ +++|+++|++||++||+|++|+ ++.. ..+.....+|++++| | +.++ .++|
T Consensus 213 ~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~~~ig 290 (448)
T 3dod_A 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGYLPIA 290 (448)
T ss_dssp EEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCE
T ss_pred EEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCcCceE
Confidence 89999888 99998776 8999999999999999999987 3221 122223356777655 9 5444 3679
Q ss_pred EEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCcEEEe
Q psy8850 207 ALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME--SIEEIYIN 283 (397)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~ 283 (397)
+++++++..+.+...... ........ ...+...+++..++++.+.+ +++.++++++.+++++.|.+ .++.+...
T Consensus 291 ~v~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 367 (448)
T 3dod_A 291 VTFATEDIYKAFYDDYENLKTFFHGHS-YTGNQLGCAVALENLALFES--ENIVEQVAEKSKKLHFLLQDLHALPHVGDI 367 (448)
T ss_dssp EEEEEHHHHHTTCSCGGGCCCCCCCCT-TTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred EEEECHHHHHHhhhccccCCcccccCC-CCcCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 999997765555431000 00001111 23344555666678877654 23444555555555555544 14444333
Q ss_pred CCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850 284 GDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (397)
... +.++.+.+.... ..++...+. ||.+.++ +++|||+
T Consensus 368 ~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------------------~~~iRi~ 419 (448)
T 3dod_A 368 RQL----GFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL------------------------GDVIAFL 419 (448)
T ss_dssp EEE----TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE------------------------TTEEEEC
T ss_pred Eee----eEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc------------------------CCEEEEE
Confidence 221 345566665321 245666554 7777654 2789999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 350 IGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
++..++++++++++++|+++++++..+
T Consensus 420 ~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 420 PPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 998899999999999999999887543
No 192
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.95 E-value=1.1e-25 Score=225.77 Aligned_cols=297 Identities=15% Similarity=0.065 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (397)
Q Consensus 42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~ 121 (397)
...+.++.+++++|.+ +.+++++|+++|+.+++.+++ ++||+|+++.++|.++..++... |.+++.++.+.+
T Consensus 206 ~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~~~---G~~~v~v~~~~~ 277 (755)
T 2vyc_A 206 AFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLMLT---GAKPVYMVPSRN 277 (755)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHH---CCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCCCC
Confidence 5678899999999987 357888888899999999988 89999999999999999987776 999999987642
Q ss_pred -----CCC-----CHHHHHHHhcC--Cce--------EEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-
Q psy8850 122 -----GLI-----TLSQLEEKICS--DTI--------LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI- 180 (397)
Q Consensus 122 -----~~~-----d~~~l~~~i~~--~~~--------~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~- 180 (397)
+.+ |+++|++++++ +++ +++++++ |++|.+.|+++|+++|++||++|++|++|+.+..
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~ 356 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGG
T ss_pred ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhccc
Confidence 346 99999999965 344 8888887 7999999999999999999999999999974321
Q ss_pred -cc--ccCc-cc--ccE------EEecccc-ccCCCCceEEEEecC--CCC--ccccccccCCccccccCCCCchhHHHH
Q psy8850 181 -DI--NIQN-YK--VDL------MSFSAHK-IYGPKGIGALYIRRN--PRT--RIEAQIHGGGHEYGLRSGTLATHQIVG 243 (397)
Q Consensus 181 -~~--~~~~-~~--~d~------~~~s~~K-~~g~~g~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (397)
+. +... .+ +|+ +++|+|| +.|+.++|+++++++ ... .+.... ..+..++++...+++
T Consensus 357 ~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~------~~~~s~sp~~~~iaa 430 (755)
T 2vyc_A 357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------MMHATTSPLYAICAS 430 (755)
T ss_dssp CGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH------HHTSCSSCCHHHHHH
T ss_pred CcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH------HHhCCCCHHHHHHHH
Confidence 10 1111 24 565 9999999 677777899989875 221 111111 224457889999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCc---------EEEeCCCCC-------------------------
Q psy8850 244 MGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEE---------IYINGDMNN------------------------- 288 (397)
Q Consensus 244 l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~~~~~------------------------- 288 (397)
+.++++.+... ..++.++..++.+++++.|.+ +++ +.++++...
T Consensus 431 l~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (755)
T 2vyc_A 431 NDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDC 509 (755)
T ss_dssp HHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGG
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCchhccccccccccccccccchhccchhhh
Confidence 99999987543 577888999999999999988 766 666654210
Q ss_pred ----------------C-----CCceEEEEecC-----------CChHHHHHHhCCcEecccCccCCCCCChhhHHHhhC
Q psy8850 289 ----------------R-----IPHNLNISFNF-----------IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALG 336 (397)
Q Consensus 289 ----------------~-----~~~~~~~~~~~-----------~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~g 336 (397)
. .+..+.+..++ +++..+.+.|. ..|
T Consensus 510 ~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~----------------------~~g 567 (755)
T 2vyc_A 510 WVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLG----------------------RHG 567 (755)
T ss_dssp TBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHH----------------------TTT
T ss_pred hccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHH----------------------HCC
Confidence 0 12344444442 23345555543 223
Q ss_pred CCccc-cCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 337 CNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 337 ~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
+.... ..+.+|++++..+|++++++++++|.++.+.+.+.
T Consensus 568 I~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~~~ 608 (755)
T 2vyc_A 568 IVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDAN 608 (755)
T ss_dssp CCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHHHT
T ss_pred CEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 22211 24789999999999999999999999998877543
No 193
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.95 E-value=1.3e-25 Score=210.50 Aligned_cols=307 Identities=14% Similarity=0.096 Sum_probs=207.7
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH--hhC
Q psy8850 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL--END 109 (397)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~--~~~ 109 (397)
.+.+++...+...++++.++++.+.+ ..++++||++|+.+ +..+. ++||+|+++.+.|+++...+... ...
T Consensus 58 ~~~y~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~ 130 (400)
T 3nmy_A 58 GFEYSRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTA 130 (400)
T ss_dssp SCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHH
T ss_pred CcccccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhc
Confidence 34455555678889999999999976 67778888999998 45555 78999999999999887776543 334
Q ss_pred CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV 189 (397)
Q Consensus 110 g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~ 189 (397)
|.+++.++.+ |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++++.+.... ...+++
T Consensus 131 g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~ 204 (400)
T 3nmy_A 131 GLDFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR-PLSLGA 204 (400)
T ss_dssp CCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-GGGGTC
T ss_pred CeEEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC-hhhcCC
Confidence 9999999876 8999999999999999999999999999999999999999999999999998543221 123479
Q ss_pred cEEEeccccc-cCCC-C-ce-EEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 190 DLMSFSAHKI-YGPK-G-IG-ALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF 264 (397)
Q Consensus 190 d~~~~s~~K~-~g~~-g-~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~ 264 (397)
|+++.|++|. .|+. . .| +++++++ ..+.+...... + ....+....+.+...++ .+..+.++..+
T Consensus 205 div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~------~-g~~~~~~~a~~~l~~l~----~l~~r~~~~~~ 273 (400)
T 3nmy_A 205 DLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS------I-GGVQGPFDSFLALRGLK----TLPLRMRAHCE 273 (400)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHH------H-CCBCCHHHHHHHHHHHT----THHHHHHHHHH
T ss_pred cEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHh------c-CCCCCHHHHHHHHHhHh----HHHHHHHHHHH
Confidence 9999999994 4441 2 35 4444332 22233222111 1 11222222222223333 34556777788
Q ss_pred HHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccC----
Q psy8850 265 LQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT---- 322 (397)
Q Consensus 265 ~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~---- 322 (397)
++..+.+.|++ .+.+..+..+. ...+.++.|.+++. ....+.+.++ ++.+..|..++
T Consensus 274 ~a~~l~~~L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~ 352 (400)
T 3nmy_A 274 NALALAQWLET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNH 352 (400)
T ss_dssp HHHHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEEC
T ss_pred HHHHHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeC
Confidence 88999999988 77776543322 22356788888642 2356666666 45556665443
Q ss_pred CCCCC----hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 323 SASLE----PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 323 ~~~~~----~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
|..+. +.......|+.+ +.+|+|++... .+.+++.|+++++
T Consensus 353 p~~~~~~~~~~~~~~~~gi~~----~liRlsvGle~----~~dli~dl~~al~ 397 (400)
T 3nmy_A 353 PAVMTHASIPVARREQLGISD----ALVRLSVGIED----LGDLRGDLERALV 397 (400)
T ss_dssp TTTTTTTTSCHHHHHHHTCCT----TEEEEECCSSC----HHHHHHHHHHHHC
T ss_pred ccccccccCCHHHHHhcCCCc----CeEEEEeCcCC----HHHHHHHHHHHHh
Confidence 21111 233455667665 89999999744 4445555555543
No 194
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.94 E-value=7.6e-25 Score=209.50 Aligned_cols=331 Identities=12% Similarity=0.084 Sum_probs=213.6
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-cc-
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-KK- 84 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~~- 84 (397)
+..+|+|++++.+++.... . .. .....+...+++++++++++.+.+ +++++||++|++.+++.+...+ ..
T Consensus 64 G~~~p~v~~A~~~~~~~~~-~-~~-----~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g 135 (452)
T 3n5m_A 64 GYGRKELAEAAYKQLQTLS-Y-FP-----MSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKG 135 (452)
T ss_dssp CBCCHHHHHHHHHHHTTCC-C-CC-----TTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHhcC-C-cc-----cccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999987622 1 11 112235678899999999988766 9999999999999999876321 12
Q ss_pred --CCCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCC--C-CC---------HHHHHHHhc----CC
Q psy8850 85 --RGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNG--L-IT---------LSQLEEKIC----SD 136 (397)
Q Consensus 85 --~g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~--~-~d---------~~~l~~~i~----~~ 136 (397)
++++|++.++.|++.......+... ...+..++..... . -| +++|+++++ ++
T Consensus 136 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 215 (452)
T 3n5m_A 136 EPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSET 215 (452)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGG
T ss_pred CCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCC
Confidence 6789999999998776554443210 1124445432111 1 12 899999987 57
Q ss_pred ceEEEEecc-cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CC
Q psy8850 137 TILVSVMLV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KG 204 (397)
Q Consensus 137 ~~~v~~~~~-~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g 204 (397)
+++|+++.+ +| +|.+.| +++|+++|++||++||+|++|+ ++.. ..+.....+|++++| | +.++ .+
T Consensus 216 ~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~ 292 (452)
T 3n5m_A 216 IAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLP 292 (452)
T ss_dssp EEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSC
T ss_pred EEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCCCcc
Confidence 889999988 89 998887 8999999999999999999987 3221 122233357777655 9 5444 56
Q ss_pred ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEE
Q psy8850 205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIY 281 (397)
Q Consensus 205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~ 281 (397)
+|+++++++..+.+............... ..+...+++..++++.+.+ +.+.++++++.+++++.|.+. ++.+.
T Consensus 293 ig~~~~~~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (452)
T 3n5m_A 293 LSATAVKREIYEAFKGKGEYEFFRHINTF-GGNPAACALALKNLEIIEN--ENLIERSAQMGSLLLEQLKEEIGEHPLVG 369 (452)
T ss_dssp CEEEEEEHHHHGGGCSSSTTCSCCCCCSS-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred eEEEEECHHHHHHHhhccCCCCccccCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 89999998766555320000100011122 2344555555577876654 344555555566666555441 45444
Q ss_pred EeCCCCCCCCceEEEEecCC--C--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850 282 INGDMNNRIPHNLNISFNFI--E--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (397)
..... +.++.+.+... + ..++...+. |+.+.++..+.+ ..+++|||+
T Consensus 370 ~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~-----------------~~~~~iRi~ 428 (452)
T 3n5m_A 370 DIRGK----GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA-----------------GYNNILTLA 428 (452)
T ss_dssp EEEES----SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST-----------------TCCCEEEEC
T ss_pred EEEEE----EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC-----------------CCCCEEEEE
Confidence 43322 33445555211 1 134555554 888888754432 114899999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 350 IGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
++..++++++++++++|++++++
T Consensus 429 ~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 429 PPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99889999999999999988753
No 195
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.94 E-value=4.2e-25 Score=211.64 Aligned_cols=334 Identities=11% Similarity=0.054 Sum_probs=216.0
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
+..+|.+++++.+++...... +.......+...++++.++++++.+.+++++++||++|++.+++.+...+.
T Consensus 66 G~~~p~v~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g 140 (460)
T 3gju_A 66 GYGRQKIADAIATQAKNLAYY-----HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLG 140 (460)
T ss_dssp CBCCHHHHHHHHHHHHHHSCC-----CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcccc-----ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 456899999999998763210 111111234577899999999887777899999999999999998763211
Q ss_pred -cCCCEEEEcCCCChhhHHHHHHHhh----------CCcEEEEeccCC-----CCCCC--------HHHHHHHhc----C
Q psy8850 84 -KRGKHIITVQTEHKSVLDSIRKLEN----------DGFRVTYLKPKN-----NGLIT--------LSQLEEKIC----S 135 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~~~~~~~~~~----------~g~~v~~v~~~~-----~~~~d--------~~~l~~~i~----~ 135 (397)
.++++|++.++.|++.......+.. ....+..++... +..++ +++|+++++ +
T Consensus 141 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~ 220 (460)
T 3gju_A 141 RPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPE 220 (460)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCC
Confidence 2468899988888877655544311 012344555331 11123 688998886 5
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CC
Q psy8850 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KG 204 (397)
Q Consensus 136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g 204 (397)
++++|+++.+++++|.+.+ +++|+++|++||++||+|++|+ ++... .+.....+|++++| | +.|+ ..
T Consensus 221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG~~~ 298 (460)
T 3gju_A 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSAYAP 298 (460)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSC
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCCCCC
Confidence 6789999999999998766 8999999999999999999998 43221 12222357777665 9 5553 35
Q ss_pred ceEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850 205 IGALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIY 281 (397)
Q Consensus 205 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~ 281 (397)
+|+++++++..+.+..... .......... ..+...+++..++++.+.+. +++..+....+++.|.+.+.+ ++.+.
T Consensus 299 lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~ 376 (460)
T 3gju_A 299 LSGVIVADRVWQVLVQGSDKLGSLGHGWTY-SAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGG-HKNVG 376 (460)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHCSCSCCCTT-TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-STTEE
T ss_pred eEEEEECHHHHHHHhcccccccccccCCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCCeE
Confidence 8999999776555531100 0000011112 33445555666788876542 444445555555556565655 55554
Q ss_pred EeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850 282 INGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (397)
..... +.++.+.+.... ..++...+. ||.+.++. ..++||
T Consensus 377 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------------~~~~iR 430 (460)
T 3gju_A 377 EVRGD----GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP----------------------QGDILG 430 (460)
T ss_dssp EEEEE----TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----------------------SSCEEE
T ss_pred EEeee----eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----------------------CCCEEE
Confidence 44322 345556654221 234555554 88777652 128899
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 348 FTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
|+++...+++++++++++|+++++++.+
T Consensus 431 i~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 431 FAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999889999999999999999987653
No 196
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.94 E-value=1.1e-25 Score=214.87 Aligned_cols=328 Identities=13% Similarity=0.068 Sum_probs=218.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
+..+|.+.+++.+++....... .+....+...++++.|+++++...+++++++||++|++.+++.+...+.
T Consensus 90 Gh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g 163 (457)
T 3tfu_A 90 GHGHPALDQALTTQLRVMNHVM------FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRG 163 (457)
T ss_dssp CBTCHHHHHHHHHHHHHCSCCC------SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999999987632111 1112234667899999999987777999999999999999997763210
Q ss_pred -cCCCEEEEcCCCChhhHHHHHHHhh-----------CCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEec-c
Q psy8850 84 -KRGKHIITVQTEHKSVLDSIRKLEN-----------DGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVML-V 145 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~~~~~~~~~~-----------~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~-~ 145 (397)
.++++|++.++.|++.......+.. ....+..++.. ..+..|+++|+++++ +++++|+++. +
T Consensus 164 ~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~ 243 (457)
T 3tfu_A 164 LPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVV 243 (457)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSE
T ss_pred CCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 1235888888887766544433311 01123333432 222358899999997 6789999999 9
Q ss_pred cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCC
Q psy8850 146 NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNP 214 (397)
Q Consensus 146 ~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~ 214 (397)
+|++|.+.+ +++|.++|++||++||+|++|. ++.. ..+.....+|++++ +| +.|+ .++|+++++++.
T Consensus 244 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~--sK~l~gG~~~lG~v~~~~~i 321 (457)
T 3tfu_A 244 QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCV--GKALTGGYLSLAATLCTADV 321 (457)
T ss_dssp ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCCEEEEEEHHH
T ss_pred cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEE--ChhhhCCCcceEEEEEcHHH
Confidence 999999887 8999999999999999999987 3321 11222335788755 59 6553 358999999766
Q ss_pred CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcEEEeCCCCCCCCc
Q psy8850 215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIYINGDMNNRIPH 292 (397)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~ 292 (397)
.+.+.....+ ........ ..|...+++..++++.+.+ +.+.+++.++.+++++.|++. ++.+...... +.
T Consensus 322 ~~~~~~~~~~-~~~~~~t~-~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~----G~ 393 (457)
T 3tfu_A 322 AHTISAGAAG-ALMHGPTF-MANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDTARALPAVTDVRVC----GA 393 (457)
T ss_dssp HHHHHHSSSC-SCCCCCTT-TTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC----SS
T ss_pred HHHhhccCCC-ceeEecCC-CcCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC----Ce
Confidence 5544210000 00011112 3344555555577887654 356777788888888888761 2444333221 44
Q ss_pred eEEEEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850 293 NLNISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (397)
Q Consensus 293 ~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (397)
++.+.+.. .+..++.+.|. ||.+.+. ++.+||+++..++++++++++++|+++
T Consensus 394 ~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 394 IGVIECDRPVDLAVATPAALDRGVWLRPF------------------------RNLVYAMPPYICTPAEITQITSAMVEV 449 (457)
T ss_dssp CEEEEESSCCCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56666654 24567777765 7777643 278999999889999999999999999
Q ss_pred HHHHH
Q psy8850 370 VKKLR 374 (397)
Q Consensus 370 ~~~~~ 374 (397)
+++++
T Consensus 450 l~~~~ 454 (457)
T 3tfu_A 450 ARLVG 454 (457)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 98764
No 197
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.94 E-value=6.6e-26 Score=217.19 Aligned_cols=308 Identities=17% Similarity=0.107 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCC-hhhHHHHHHHhhCCcEEEEecc
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH-KSVLDSIRKLENDGFRVTYLKP 118 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~-~s~~~~~~~~~~~g~~v~~v~~ 118 (397)
.....++++.++++++.+ ++++++||++|+.++++++. ++|| +++.++| +++...+... |.+++.+++
T Consensus 74 ~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l~----~~gd--i~~~~~~~~~~~~~~~~~---G~~~~~v~~ 142 (456)
T 2ez2_A 74 SENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQ--YVAGNMYFTTTRYHQEKN---GAVFVDIVR 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTC--EEEESSCCHHHHHHHHHT---TCEEEECBC
T ss_pred ChhHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCCC--EeccccccchhHHHHHHc---CCEEEEecc
Confidence 346788999999999976 79999999999999999886 7888 6777888 7767666655 999999988
Q ss_pred CC----------CCCCCHHHHHHHhcCCc----eEEEEecccC-ccccccc---HHHHHHHHHhcCcEEEEecccccC--
Q psy8850 119 KN----------NGLITLSQLEEKICSDT----ILVSVMLVNN-EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG-- 178 (397)
Q Consensus 119 ~~----------~~~~d~~~l~~~i~~~~----~~v~~~~~~~-~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~-- 178 (397)
+. ++.+|+++|++++++++ ++|++++++| |||.+.| +++|+++|++||+++|+|++|+.|
T Consensus 143 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~ 222 (456)
T 2ez2_A 143 DEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENA 222 (456)
T ss_dssp GGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHH
T ss_pred cccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccc
Confidence 63 25789999999998765 8999999998 9999888 899999999999999999999864
Q ss_pred -------ccccccC--------cccccEEEeccccccCCCCceEEEEe-cCCCCccccccccCCccccccCCCCchhHHH
Q psy8850 179 -------KIDINIQ--------NYKVDLMSFSAHKIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 242 (397)
Q Consensus 179 -------~~~~~~~--------~~~~d~~~~s~~K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (397)
....+.. ....|++++|++|+++++..|+++.+ ++....+......+. .. ...+..+...+.
T Consensus 223 ~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 300 (456)
T 2ez2_A 223 YFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYE-GM-PSYGGLAGRDME 300 (456)
T ss_dssp HHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHT-CC-TTTTTCCHHHHH
T ss_pred ccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhcc-Cc-ccccCcchhHHH
Confidence 1111110 12368888888886554335888883 444443332211100 00 011122222222
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe----cCCChHHH-----HHHh-C
Q psy8850 243 GMGEAFRLARIEM-KEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFIEGESL-----LMAI-K 311 (397)
Q Consensus 243 ~l~~al~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~l-~ 311 (397)
++ ++... +.+ +.+.++..++.+++.+.|++ . ++.+..+.. ...+++.+ ++.+..++ ...| .
T Consensus 301 a~--a~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 372 (456)
T 2ez2_A 301 AM--AIGLR-EAMQYEYIEHRVKQVRYLGDKLKA-A-GVPIVEPVG---GHAVFLDARRFCEHLTQDEFPAQSLAASIYV 372 (456)
T ss_dssp HH--HHHHH-HHTCHHHHHHHHHHHHHHHHHHHH-T-TCCBCSSCC---SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHH
T ss_pred HH--HHHHH-HHhHHHHHHHHHHHHHHHHHHHhc-C-CCccccCCC---ceEEEEEhHHhcCCCChhhccHHHHHHHHHH
Confidence 21 22211 223 45666777788889999988 3 665544322 34555554 23344444 5555 2
Q ss_pred --CcEecc-cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHh
Q psy8850 312 --DIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 312 --~i~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
||.+.+ |..|.+. .+ ..|.......+.|||+++.. ++++++++++++|++++++..+
T Consensus 373 ~~gv~~~~~g~~~~~~--~~-----~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~~ 433 (456)
T 2ez2_A 373 ETGVRSMERGIISAGR--NN-----VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp HHSEECEEESHHHHCB--CT-----TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred hcCeeeeccccccccc--Cc-----cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 777544 4433220 00 00111111237899999976 7999999999999999877544
No 198
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.94 E-value=5.4e-25 Score=210.97 Aligned_cols=341 Identities=13% Similarity=0.083 Sum_probs=223.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
+..+|.|++++.+++...... +.......+...++.+.|+++++.+.+++++++||++|++.+++.+...+.
T Consensus 70 Gh~~p~v~~A~~~~~~~~~~~-----~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g 144 (472)
T 3hmu_A 70 GYGRDELAEVAARQMRELPYY-----NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKG 144 (472)
T ss_dssp CBCCHHHHHHHHHHHHHCSCC-----CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcccc-----ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 456899999999998763210 111111234567899999999987777899999999999999998763211
Q ss_pred -cCCCEEEEcCCCChhhHHHHHHHhhC---------CcEEEEeccCC-----CCCCC--------HHHHHHHhc----CC
Q psy8850 84 -KRGKHIITVQTEHKSVLDSIRKLEND---------GFRVTYLKPKN-----NGLIT--------LSQLEEKIC----SD 136 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~~~~~~~~~~~---------g~~v~~v~~~~-----~~~~d--------~~~l~~~i~----~~ 136 (397)
.++++|++.++.|++.......+... ...+..++.+. ++ .| +++|+++++ ++
T Consensus 145 ~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~ 223 (472)
T 3hmu_A 145 QPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENR 223 (472)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 14678888888888776554443210 01344555332 11 33 788998886 56
Q ss_pred ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CCc
Q psy8850 137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KGI 205 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g~ 205 (397)
+++|+++.+++++|.+.+ +++|.++|++||++||+|++|+ +|... .+.....+|++++| | +.|+ .++
T Consensus 224 ~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~pl 301 (472)
T 3hmu_A 224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPI 301 (472)
T ss_dssp EEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCC
T ss_pred EEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCcce
Confidence 789999999999999887 8999999999999999999997 33221 12223357888766 9 5553 458
Q ss_pred eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhc---CcEE
Q psy8850 206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL-FLQKRLYNGLMESI---EEIY 281 (397)
Q Consensus 206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~---~~~~ 281 (397)
|+++++++..+.+... ........ ..+...+++..++++.+.+ +.+.+++. ++.+++++.|++ + +.+.
T Consensus 302 G~v~~~~~i~~~~~~~----~~~~~~t~-~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~v~ 373 (472)
T 3hmu_A 302 GGSIVCDEVAHVIGKD----EFNHGYTY-SGHPVAAAVALENLRILEE--ENILDHVRNVAAPYLKEKWEA-LTDHPLVG 373 (472)
T ss_dssp EEEEEEHHHHHHHTTS----CBCCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHTHHHHHHHHHHG-GGGSTTEE
T ss_pred EEEEECHHHHHhcccC----CccccCCC-CCCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH-HhcCCCeE
Confidence 9999987665554211 00111122 2344555555578887654 35666777 777777777765 4 3343
Q ss_pred EeCCCCCCCCceEEEEecCCC-------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850 282 INGDMNNRIPHNLNISFNFIE-------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 346 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 346 (397)
.+... +.++.+.+.... ...+...|. |+.+.++ +++|
T Consensus 374 ~vr~~----G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------g~~i 425 (472)
T 3hmu_A 374 EAKIV----GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV------------------------GDRM 425 (472)
T ss_dssp EEEEE----TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE------------------------TTEE
T ss_pred EEEec----CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec------------------------CCEE
Confidence 33221 345556654211 234555544 6666543 2789
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhccccccccccccC
Q psy8850 347 RFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397 (397)
Q Consensus 347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (397)
||+++..++++++++++++|+++++++.+. -+.++++++++=-||
T Consensus 426 Ri~p~~~~t~e~i~~~l~~l~~~l~~~~~~------~~~~~~~~~~~~~~~ 470 (472)
T 3hmu_A 426 IISPPLVITPAEIDEMFVRIRKSLDEAQAE------IEKQGLMKSEGHHHH 470 (472)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHHHH------HHHHTCCCBTTCCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHhhhcCCCCCcC
Confidence 999998899999999999999999877542 234566666655444
No 199
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.94 E-value=5.4e-26 Score=217.30 Aligned_cols=327 Identities=13% Similarity=0.064 Sum_probs=216.2
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
++.++++++++.+++.... .+. ... ...+...++++.++++++.++++|++++||++|++++++++.....
T Consensus 65 G~~~~~v~~a~~~~~~~~~--~~~-~~~---~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g 138 (449)
T 3a8u_X 65 GHTRKEIQEAVAKQLSTLD--YSP-GFQ---YGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138 (449)
T ss_dssp CBSCHHHHHHHHHHTTTCS--CCC-SSS---CCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCC--Ccc-ccc---cCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3458999999999987632 111 101 1123567889999999987777899999999999999998763221
Q ss_pred -cCCCEEEEcCCCChhhHH-HHHHHhh----CC-----cEEEEeccCCCC-----CCC--------HHHHHHHhc----C
Q psy8850 84 -KRGKHIITVQTEHKSVLD-SIRKLEN----DG-----FRVTYLKPKNNG-----LIT--------LSQLEEKIC----S 135 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~~~-~~~~~~~----~g-----~~v~~v~~~~~~-----~~d--------~~~l~~~i~----~ 135 (397)
.++++|++.++.|++... ++...+. .+ ..+..++.+... .+| +++|+++++ +
T Consensus 139 ~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 218 (449)
T 3a8u_X 139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDAS 218 (449)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 167899998888876643 4333210 01 124445443211 246 999999987 4
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccCC--CC
Q psy8850 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KG 204 (397)
Q Consensus 136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~--~g 204 (397)
++++|++++.+++||.+.| +++|.++|++||++||+|++|+ ++.. ..+.....+|++ |++|.+++ ..
T Consensus 219 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~ 296 (449)
T 3a8u_X 219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTNGAIP 296 (449)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSSC
T ss_pred CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccCCCCc
Confidence 6788888877788999888 9999999999999999999994 5532 112222346877 55594443 23
Q ss_pred ceEEEEecCCCCccccccc--c-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--
Q psy8850 205 IGALYIRRNPRTRIEAQIH--G-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE-- 279 (397)
Q Consensus 205 ~g~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 279 (397)
+|+++++++..+.+..... . ....... ..+.+...+++..++++.+.+ ..+.++++++.+++++.|++ +..
T Consensus 297 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~-t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~ 372 (449)
T 3a8u_X 297 MGAVIASTEIYQTFMNQPTPEYAVEFPHGY-TYSAHPVACAAGLAALCLLQK--ENLVQSVAEVAPHFEKALHG-IKGAK 372 (449)
T ss_dssp CEEEEEEHHHHHHHHTCSSCTTSCSSCCCC-TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHT-TTTST
T ss_pred eEEEEECHHHHHHhhccCcccccccccccC-CCcccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 8999998765444432110 0 0000111 123355566666678887665 35678888888999998877 432
Q ss_pred -EEEeCCCCCCCCceEEEEecCCC------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850 280 -IYINGDMNNRIPHNLNISFNFIE------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 350 (397)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 350 (397)
+..... .+.++++.++... ..++...|. ||.+.++ ++++||++
T Consensus 373 ~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------g~~iRis~ 424 (449)
T 3a8u_X 373 NVIDIRN----FGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG------------------------GDTLQFGP 424 (449)
T ss_dssp TEEEEEE----ETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE------------------------TTEEEECC
T ss_pred CeEEEee----eEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC------------------------CCEEEEEC
Confidence 221111 1456777776431 125666665 8877754 17899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 351 GRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 351 ~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+..++++++++++++|+++++++
T Consensus 425 ~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 425 TFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988654
No 200
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.94 E-value=3.1e-25 Score=211.10 Aligned_cols=311 Identities=15% Similarity=0.155 Sum_probs=214.3
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-c----
Q psy8850 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-K---- 83 (397)
Q Consensus 9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~---- 83 (397)
++|.+++++.+++.... ...+ .+ ..+...++++.++++++. +++++++||++|++.+++++..+. +
T Consensus 93 ~~p~v~~Ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~~~~~~~~~~g~ 163 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLT-LTSR-AF-----YNNVLGEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYTVKGI 163 (439)
T ss_dssp TCHHHHHHHHHHHTTCS-CCCT-TS-----EESSHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhcC-cccC-cc-----CCHHHHHHHHHHHHhcCC--CEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 78999999999987632 1111 11 123567888999999974 589999999999999999765321 1
Q ss_pred cCC-CEEEEcCCCChhhHH-HHHHHh----hCC-----cEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCcccc
Q psy8850 84 KRG-KHIITVQTEHKSVLD-SIRKLE----NDG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV 151 (397)
Q Consensus 84 ~~g-~~vl~~~~~~~s~~~-~~~~~~----~~g-----~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~ 151 (397)
.+| ++|++.++.|++... ++.... ..+ ..+..+|.+ |+++|++++ .+++++|+++++++++|.
T Consensus 164 ~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~ 238 (439)
T 2oat_A 164 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGEAGV 238 (439)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTSTTEEEEEECSSBTTTTS
T ss_pred CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCC
Confidence 234 789888888876543 333221 001 356667654 899999999 467889999888888998
Q ss_pred cc----cHHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcccc
Q psy8850 152 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEA 220 (397)
Q Consensus 152 ~~----~l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~ 220 (397)
+. ++++|.++|++||+++|+|++|. ++.. ..+.....+|++ |++| +.++ ..+|+++++++..+.+.+
T Consensus 239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEEEECHHHHhccCC
Confidence 76 58999999999999999999996 2211 112223357877 5569 5443 348999999765555543
Q ss_pred ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEe
Q psy8850 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISF 298 (397)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 298 (397)
...+ ... ..+....++..++++.+.+ .++.+++.++++++++.|++ + +.+..... .+.++.+.+
T Consensus 317 ~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~----~g~~~~v~l 382 (439)
T 2oat_A 317 GEHG------STY-GGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMK-LPSDVVTAVRG----KGLLNAIVI 382 (439)
T ss_dssp TSSC------CSS-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-SCTTTEEEEEE----ETTEEEEEE
T ss_pred CCcc------cCC-CcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH-hcCCCcEEEEe----eeeEEEEEE
Confidence 2111 112 2344555666678887655 35778889999999999988 4 21111111 145667777
Q ss_pred cC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 299 NF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 299 ~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+. .+..++...|. ||.+.++ .++++|++++..++++++++++++|++++++
T Consensus 383 ~~~~~~~~~~l~~~l~~~Gv~v~~~-----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 383 KETKDWDAWKVCLRLRDNGLLAKPT-----------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp CCCSSCCHHHHHHHHHHTTEECCBS-----------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ecCccHHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 64 24567777765 8877653 1388999999889999999999999988753
No 201
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.94 E-value=6e-26 Score=210.45 Aligned_cols=288 Identities=15% Similarity=0.125 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC--EEEEcCCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (397)
Q Consensus 41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~--~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~ 118 (397)
+...+++++++++++.+ ..++++||++|+.+++.++. .+++ +|+++.+.|++...........|.+++.++.
T Consensus 47 ~~~~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 120 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA 120 (357)
T ss_dssp TTHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence 46788999999999986 45666889999999998887 5666 7888877776655422222233889988885
Q ss_pred CCCCCCCHHHHHHHhcCCceEEEEecccCcc-ccccc---HHHHHHHHHhcCcEEEEecccccC------ccccccCccc
Q psy8850 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAVG------KIDINIQNYK 188 (397)
Q Consensus 119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~~------~~~~~~~~~~ 188 (397)
+++.+|+++++++. ++++|++++++||+ |.+.| +++|+++|++||++||+|++|..+ ....++. ..
T Consensus 121 -~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~ 196 (357)
T 3lws_A 121 -ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-GL 196 (357)
T ss_dssp -TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-TT
T ss_pred -CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-hc
Confidence 45679999999884 38999999999998 88887 788999999999999999998621 1111111 24
Q ss_pred ccEEEecccccc-CCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 189 VDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (397)
Q Consensus 189 ~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~ 267 (397)
.|+++.|+||.+ |+.| |+++.+++..+.+........ ......+....+++ .+++.+ .+..+++.++++
T Consensus 197 ~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~l~~~----~~~~~~~~~~~~ 266 (357)
T 3lws_A 197 FDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYG----GDLISLYPYIVSAD-YYYELR----KDRMGQYYEQAK 266 (357)
T ss_dssp SSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT----CCCSCCHHHHHHHH-HHHHHH----TTCHHHHHHHHH
T ss_pred CCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhc----CCcccchHHHHHHH-HHHHHH----HHHHHHHHHHHH
Confidence 688899999944 7776 888888765554432211000 00111222222222 344432 223344677788
Q ss_pred HHHHHHhhhcCcEEEeC-CCCCCCCceEEEEecCC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccc
Q psy8850 268 RLYNGLMESIEEIYING-DMNNRIPHNLNISFNFI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDEL 341 (397)
Q Consensus 268 ~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (397)
++.+.|++ ++++.+.. ++. ..++++.++.. +..++.+.|. ||.+.+|..+.+
T Consensus 267 ~l~~~L~~-~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~------------------ 324 (357)
T 3lws_A 267 QLAEQFNA-LPGVHTTPEVPV---SNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKD------------------ 324 (357)
T ss_dssp HHHHHHHT-STTEEEESSSCS---SSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECS------------------
T ss_pred HHHHHHHh-CCCCeeccCCCc---ceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCC------------------
Confidence 99999998 88988753 332 45667777643 2456666665 999998853332
Q ss_pred cCceEEEeeCCC---CCHHHHHHHHHHHHHHH
Q psy8850 342 AHSSIRFTIGRF---TTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 342 ~~~~iRi~~~~~---~~~~~i~~~~~~l~~~~ 370 (397)
+..++|++++.. .+.+++++++++|.+++
T Consensus 325 ~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 325 GYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 125899998743 57899999999888754
No 202
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.94 E-value=1.9e-25 Score=212.59 Aligned_cols=325 Identities=14% Similarity=0.094 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..+|.+++++.+.+.... +... .+ ..+...++++.++++++.++++|++++||++|++.+++.+.. + .+++
T Consensus 59 ~~~p~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~-~-~~~~ 129 (433)
T 1zod_A 59 HCHPEIVSVIGEYAGKLD-HLFS-EM-----LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL-V-TGKY 129 (433)
T ss_dssp BTCHHHHHHHHHHHHHCC-CCCT-TC-----CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH-H-HTCC
T ss_pred CCCHHHHHHHHHHHHhCc-cccc-cc-----CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH-h-hCCC
Confidence 358999999999987631 1111 11 124567888899999998778999999999999999986542 1 2357
Q ss_pred EEEEcCCCChhhHHHHHHHhh---------CCcEEEEeccCCC------------CCCCHHHHHHHhc----CCceEEEE
Q psy8850 88 HIITVQTEHKSVLDSIRKLEN---------DGFRVTYLKPKNN------------GLITLSQLEEKIC----SDTILVSV 142 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~---------~g~~v~~v~~~~~------------~~~d~~~l~~~i~----~~~~~v~~ 142 (397)
+|++.++.|++.......... ....+..++.+.. +.+|+++|+++++ +++++|++
T Consensus 130 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~ 209 (433)
T 1zod_A 130 EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIA 209 (433)
T ss_dssp EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred eEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 899888888766544332210 0113444444311 1236899999987 46788888
Q ss_pred ecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCceEEEEec
Q psy8850 143 MLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212 (397)
Q Consensus 143 ~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~ 212 (397)
+.++|+||.+.+ +++|+++|++||+++|+|++|+ ++... .+.....+|++ |++| +.++.++|++++++
T Consensus 210 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~ 287 (433)
T 1zod_A 210 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSA 287 (433)
T ss_dssp CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECH
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhH
Confidence 777788998766 8999999999999999999998 43221 12222346766 5559 54444589999987
Q ss_pred CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCC
Q psy8850 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNR 289 (397)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~ 289 (397)
+..+.+.... ....... ..+...+++..++++.+.+ ..+.+++.++++++++.|++. ++.+......
T Consensus 288 ~~~~~~~~~~----~~~~~t~-~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~--- 357 (433)
T 1zod_A 288 AIEERAHELG----YLFYTTH-VSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR--- 357 (433)
T ss_dssp HHHHHHHHTT----CCCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE---
T ss_pred HHHHhhccCC----CCCCCCC-CcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE---
Confidence 6554443310 0000112 2355556666678887655 345677777788888877661 2444333221
Q ss_pred CCceEEEEecC---------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 290 IPHNLNISFNF---------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 290 ~~~~~~~~~~~---------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
+.++.+.++. ....++.+.+. ||.+.+|..+. .++++||+++..+++++
T Consensus 358 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------------------~~~~lRi~~~~~~t~~~ 417 (433)
T 1zod_A 358 -GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-------------------MGGVFRIAPPLTVSEDE 417 (433)
T ss_dssp -TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-------------------SCCEEEECCCTTCCHHH
T ss_pred -EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCC-------------------CCCEEEEECCcCCCHHH
Confidence 4455666643 12456666665 88888764211 13789999998899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKVKKL 373 (397)
Q Consensus 359 i~~~~~~l~~~~~~~ 373 (397)
+++++++|+++++++
T Consensus 418 i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 418 IDLGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 203
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.94 E-value=5.6e-26 Score=213.06 Aligned_cols=310 Identities=13% Similarity=0.047 Sum_probs=200.6
Q ss_pred CCCCHHHHHHHHHHH-hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C-----CCCCc--EEEeCChhHHHHHHHHH
Q psy8850 7 TPIDPRVVDKMIPYL-RVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y-----ADPRE--IIWTSGATESNNLAIKG 77 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-----~~~~~--i~~~~g~t~a~~~~l~~ 77 (397)
.++++.+.++.. .. .. .. .. .| ....+..++|+++++++ + .++++ +++|+|+++|+.+++.+
T Consensus 46 ~~~~~~v~~a~~-~~~~~-~~-~~--~Y----~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~ 116 (405)
T 3k7y_A 46 LHIFDSVLNADK-LVTEN-YK-EK--PY----LLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEF 116 (405)
T ss_dssp BCCCHHHHHHHH-HHHHH-CC-CC--CC----CTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHH
T ss_pred CcccHHHHHHHH-HhcCC-CC-CC--CC----CCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHH
Confidence 345788888876 43 22 10 00 12 22234567777777776 2 13343 68999999999999998
Q ss_pred hHhhhcc--CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CC-CCCCCHHHHHHHhcC--CceEEEEecc-cCccc
Q psy8850 78 AAHFYKK--RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KN-NGLITLSQLEEKICS--DTILVSVMLV-NNEIG 150 (397)
Q Consensus 78 l~~~~~~--~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~i~~--~~~~v~~~~~-~~~tG 150 (397)
+. . + |+|++++|+|+.+...++.. |.+++.+|+ ++ ++.+|++++++++++ +++++++..+ |||||
T Consensus 117 l~----~~~~-d~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG 188 (405)
T 3k7y_A 117 LK----MLNV-ETLYVTNPPYINHVNMIESR---GFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCS 188 (405)
T ss_dssp HH----TTTC-CEEEEESSCCHHHHHHHHTT---TCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTC
T ss_pred HH----hcCC-CEEEEeCCCCHhHHHHHHHc---CCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCC
Confidence 87 5 7 99999999999999888777 999999998 33 477999999999874 5678777654 89999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEecccccCcc--------cc-cc-CcccccEEEeccccccCCCC--ceEEEEe---c
Q psy8850 151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------DI-NI-QNYKVDLMSFSAHKIYGPKG--IGALYIR---R 212 (397)
Q Consensus 151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--------~~-~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~---~ 212 (397)
.+++ +++|+++|++||++||+|++|..... +. .+ ......+++.|++|.++..| +|++++. +
T Consensus 189 ~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~ 268 (405)
T 3k7y_A 189 VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ 268 (405)
T ss_dssp CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH
T ss_pred CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCH
Confidence 9998 56788999999999999999872211 00 01 11134688899999766445 7887652 2
Q ss_pred CCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh----hhcCc---
Q psy8850 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLM----ESIEE--- 279 (397)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~--- 279 (397)
+....+...+... .+...+.++.....+...+++. +.+.+..++++++++++.+.+.|+ + +..
T Consensus 269 ~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~-~g~~~~ 344 (405)
T 3k7y_A 269 EEKKIVFNNLCFI---VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK-YNLNYD 344 (405)
T ss_dssp HHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCCCC
T ss_pred HHHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCC
Confidence 1221221111000 0011123344444344344432 234567778889999999999998 7 421
Q ss_pred EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH
Q psy8850 280 IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK 357 (397)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~ 357 (397)
+.+..+.+ +.++++.++ . ++...|. ||.+.+| + ||+++. .+++
T Consensus 345 ~~~~~p~g---g~f~~~~l~---~-~~~~~L~~~gV~v~p~-------------------------~--Ris~a~-~~~~ 389 (405)
T 3k7y_A 345 WNVYKKQR---GLFSFVPLL---A-KIAEHLKTHHIYIINN-------------------------G--RINVSG-ITKN 389 (405)
T ss_dssp GGGGSSCC---SSEEECGGG---G-GGTTTTTTTTEECCTT-------------------------S--EEEGGG-CCTT
T ss_pred CccccCCc---eEEEecCCC---H-HHHHHHHHCCEeecCC-------------------------C--eEEEec-cCHH
Confidence 33333322 223333333 2 2223333 6766654 2 999975 4689
Q ss_pred HHHHHHHHHHHHHHH
Q psy8850 358 EIDFTIKLLKMKVKK 372 (397)
Q Consensus 358 ~i~~~~~~l~~~~~~ 372 (397)
+|++++++|++++++
T Consensus 390 ~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 390 NVDYIADKICLSLSQ 404 (405)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998864
No 204
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=3e-26 Score=220.25 Aligned_cols=337 Identities=17% Similarity=0.154 Sum_probs=208.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
+|+.+..++ +++++++.+.+.. +. . .|. ......+++++++++++.+ ++++|+|||+|+.++++++.
T Consensus 44 lD~~~~~~~-~~v~~a~~~~l~~--~~--~-~y~----~~~~~~~l~~~la~~~~~~--~v~~t~~gt~A~~~al~~~~- 110 (467)
T 2oqx_A 44 IDLLTDSGT-GAVTQSMQAAMMR--GD--E-AYS----GSRSYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLI- 110 (467)
T ss_dssp EECSCCSSC-SCCCHHHHHHTTS--CC--C-CSS----SCHHHHHHHHHHHHHHCCS--EEEEEC--CCSHHHHHHHHH-
T ss_pred EecccCCCc-HHHHHHHHHHhcc--Cc--c-eec----cCchhHHHHHHHHHHhCcC--cEEEcCCcHHHHHHHHHHHh-
Confidence 355555555 7888888877643 10 1 121 1235678899999999874 89999999999999999887
Q ss_pred hhccC-----C----CEEEEcCCCChhhHHHHHHHhhCCcEEEEe------ccC----CCCCCCHHHHHHHhcC----Cc
Q psy8850 81 FYKKR-----G----KHIITVQTEHKSVLDSIRKLENDGFRVTYL------KPK----NNGLITLSQLEEKICS----DT 137 (397)
Q Consensus 81 ~~~~~-----g----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v------~~~----~~~~~d~~~l~~~i~~----~~ 137 (397)
++ | |+|+++ ..|.......... .|..+... +.+ .++.+|+++|++++++ ++
T Consensus 111 ---~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~ 184 (467)
T 2oqx_A 111 ---KKREQEKGLDRSKMVAFS-NYFFDTTQGHSQI--NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNV 184 (467)
T ss_dssp ---HHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH--TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGC
T ss_pred ---ccccccCCCCccceEEec-ccccccchhhhhc--cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCce
Confidence 34 6 888877 4554433332222 25555443 222 3467899999999984 79
Q ss_pred eEEEEecccCcc-ccccc---HHHHHHHHHhcCcEEEEeccccc-----------CccccccCc------ccccEEEecc
Q psy8850 138 ILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQN------YKVDLMSFSA 196 (397)
Q Consensus 138 ~~v~~~~~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~-----------~~~~~~~~~------~~~d~~~~s~ 196 (397)
++|++++++||+ |.+++ +++|+++|++||++||+|+++++ +....+... ...|++++|+
T Consensus 185 ~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~ 264 (467)
T 2oqx_A 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSA 264 (467)
T ss_dssp CCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEES
T ss_pred eEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEec
Confidence 999999999998 77766 67999999999999999977654 111111111 1468889999
Q ss_pred ccccCCC-CceEEEEecC-CCC---cccccc-ccCCccccccCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy8850 197 HKIYGPK-GIGALYIRRN-PRT---RIEAQI-HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEM-KEELKRILFLQKRL 269 (397)
Q Consensus 197 ~K~~g~~-g~g~~~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~-~~~~~~~~~~~~~l 269 (397)
||.+|.+ | |+++.+++ ..+ .+.+.. .++. ....++.+...+.++..+++. .+ +...++..++++++
T Consensus 265 sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~al~~~l~~---~~~~~~~~~~~~~~~~l 337 (467)
T 2oqx_A 265 KKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEG---FPTYGGLEGGAMERLAVGLYD---GMNLDWLAYRIAQVQYL 337 (467)
T ss_dssp SSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTS---SCCCCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred ccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCC---cccccchhhhHHHHHHHhhHh---hhhHHHHHHHHHHHHHH
Confidence 9965643 4 77777654 222 222221 1111 112233333333333332221 11 23445567788899
Q ss_pred HHHHhhhcCcEEEeCCCCCCCCceEEEEec----CCC-----hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCC
Q psy8850 270 YNGLMESIEEIYINGDMNNRIPHNLNISFN----FIE-----GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGC 337 (397)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~ 337 (397)
.+.|++ + ++.+. +.. +..+++.++ +.+ ..++...| . ||.+.++..|..+.. + ..|.
T Consensus 338 ~~~L~~-~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~-~-----~~g~ 405 (467)
T 2oqx_A 338 VDGLEE-I-GVVCQ-QAG---GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD-P-----KTGK 405 (467)
T ss_dssp HHHHHH-T-TCCEE-EEC---SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-T-----TTCS
T ss_pred HHHHHH-C-CCeee-cCC---ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccccccccc-c-----cccc
Confidence 999988 5 66655 322 345566663 233 23346666 4 898887543211000 0 0011
Q ss_pred CccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHh
Q psy8850 338 NDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 338 ~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
......++||++++.. +++++|++++++|++++++.++
T Consensus 406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 1112247899999988 8999999999999999887654
No 205
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.94 E-value=1.8e-26 Score=216.48 Aligned_cols=280 Identities=14% Similarity=0.115 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhCC------CCCcEEEeCChhHHHHHHHHHhHhhhccCCC----EEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850 44 EKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRV 113 (397)
Q Consensus 44 ~~~~~~la~~~~~------~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~g~~v 113 (397)
.++++.++++++. ++++|++|+|+++|+.+++.++. ++|| +|++++|+|+++...+... |.++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEETTYV---RSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHHHTT---CBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHHHHc---CCeE
Confidence 6788888888772 33589999999999999999988 7899 9999999999998877766 8888
Q ss_pred EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-ccccCcccccEE
Q psy8850 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLM 192 (397)
Q Consensus 114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-~~~~~~~~~d~~ 192 (397)
+.++.+.++ ++ .+++++|++++++||||.+++ +|++.+++++++||+|++|..+.. ++.. ..+.+++
T Consensus 144 ~~~~~d~~~-l~--------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~ 211 (391)
T 3bwn_A 144 YKWEGDAWG-FD--------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIM 211 (391)
T ss_dssp EEEEEESTT-CC--------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEE
T ss_pred EEecCCHHH-cC--------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEE
Confidence 888876443 22 257899999999999999987 454422233499999999985322 2221 3367899
Q ss_pred EeccccccCCCC--ceEEEE-ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH----------HHHHHHHH
Q psy8850 193 SFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA----------RIEMKEEL 259 (397)
Q Consensus 193 ~~s~~K~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~----------~~~~~~~~ 259 (397)
+.|+||.+|++| +|++++ +++....+..... ....+.+.....++..+++.. .+++++.+
T Consensus 212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 284 (391)
T 3bwn_A 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGR 284 (391)
T ss_dssp EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred EEechhhcCCCccceEEEEecCHHHHHHHHHHhc-------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence 999999877666 599888 5554444433221 111234555555555677653 23578889
Q ss_pred HHHHHHHHHHHHHHhhhcCcEEEeCCCCC----------CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCC
Q psy8850 260 KRILFLQKRLYNGLMESIEEIYINGDMNN----------RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLE 327 (397)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~ 327 (397)
++++++++++.+.|++ ++++.+..+.+. ..+.++++.++.. ..+...+. ||.+.+|..|..
T Consensus 285 ~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~gV~v~pg~~fg~---- 357 (391)
T 3bwn_A 285 EMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--TDLVSELRRHKVMSRAGERCGS---- 357 (391)
T ss_dssp HHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS--CCHHHHHHHTTEECEEGGGGTC----
T ss_pred HHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcceEEEecCCcH--HHHHHHHHHCCEEEccCCCCCC----
Confidence 9999999999999999 777766543221 1122456666532 23444443 999999976532
Q ss_pred hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 328 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
..+++||+++. +++++++++++|++++++
T Consensus 358 --------------~~~~iRis~~~--~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 358 --------------DKKHVRVSMLS--REDVFNVFLERLANMKLI 386 (391)
T ss_dssp --------------CTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred --------------CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 13789999994 899999999999887644
No 206
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.94 E-value=1.3e-24 Score=208.21 Aligned_cols=323 Identities=14% Similarity=0.089 Sum_probs=212.4
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
+..+|.|++++.+++...... +.......+...+++++++++++.+.++|++++||++|++.+++.+...+.
T Consensus 65 G~~~p~v~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g 139 (459)
T 4a6r_A 65 GYGRKDFAEAARRQMEELPFY-----NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQG 139 (459)
T ss_dssp CBCCHHHHHHHHHHHHHCSCC-----CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcccc-----ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 456899999999998763210 111112234677899999999988778999999999999999998773211
Q ss_pred -cCCCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCC-----CCCCC--------HHHHHHHhc----C
Q psy8850 84 -KRGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKN-----NGLIT--------LSQLEEKIC----S 135 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~-----~~~~d--------~~~l~~~i~----~ 135 (397)
.++++|++.++.|+++......+... ...+..++... +. +| +++|++++. +
T Consensus 140 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~ 218 (459)
T 4a6r_A 140 KPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGAD 218 (459)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence 14689999999998877655544211 11334444321 11 34 788998886 4
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CC
Q psy8850 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KG 204 (397)
Q Consensus 136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g 204 (397)
++++|+++.+++++|.+.+ +++|.++|++||++||+|++|+ ++... .+.....+|++++| | +.|+ .+
T Consensus 219 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~ 296 (459)
T 4a6r_A 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLP 296 (459)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSC
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCC
Confidence 6788888888888888877 8999999999999999999987 32221 12223357888765 9 5553 46
Q ss_pred ceEEEEecCCCCccc---cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----Hhhh
Q psy8850 205 IGALYIRRNPRTRIE---AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL-FLQKRLYNG----LMES 276 (397)
Q Consensus 205 ~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~-~~~~~l~~~----l~~~ 276 (397)
+|+++++++..+.+. ....+ ... ..+...+++..++++.+.+ +.+.++++ ++.+++++. |.+
T Consensus 297 lg~v~~~~~i~~~~~~~~~~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~- 366 (459)
T 4a6r_A 297 IGAVFVGKRVAEGLIAGGDFNHG------FTY-SGHPVCAAVAHANVAALRD--EGIVQRVKDDIGPYMQKRWRETFSR- 366 (459)
T ss_dssp CEEEEECHHHHHHHHHHCTTHHH------HHH-CSCHHHHHHHHHHHHHHHH--TCHHHHHHHTHHHHHHHHHHHHHTT-
T ss_pred ccceeeCHHHHHHhhcCCCcccC------CCC-CCCHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 899999876655544 21111 112 2334455555577876654 23344444 444444444 444
Q ss_pred cCcEEEeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCcccc
Q psy8850 277 IEEIYINGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELA 342 (397)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (397)
++.+...... +.++.+.+.... ..++...+. |+.+.++
T Consensus 367 ~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------ 418 (459)
T 4a6r_A 367 FEHVDDVRGV----GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC------------------------ 418 (459)
T ss_dssp CTTEEEEEEE----TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE------------------------
T ss_pred CCCeEEEEEE----EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC------------------------
Confidence 4555444322 345556654211 344555554 7777654
Q ss_pred CceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 343 HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 343 ~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
++++||+++...+++++++++++|+++++++.+
T Consensus 419 g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 419 GDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 178999999889999999999999999988764
No 207
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.94 E-value=4.2e-25 Score=210.87 Aligned_cols=324 Identities=14% Similarity=0.113 Sum_probs=215.2
Q ss_pred CCCCHHHH-H-HHHH---HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850 7 TPIDPRVV-D-KMIP---YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAH 80 (397)
Q Consensus 7 ~~~~~~v~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~ 80 (397)
++.+|.|+ + ++.+ ++.... +. .. . ...+...++++.++++++ .++++|++++||++|++.+++.+..
T Consensus 69 G~~~p~v~~~~A~~~~~~~~~~~~---~~-~~--~-~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~ 141 (449)
T 2cjg_A 69 GMNPPALVDDREFHAELMQAALNK---PS-NS--D-VYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFD 141 (449)
T ss_dssp CBSCHHHHTCHHHHHHHHHHHTCC---CC-TT--T-CCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcC---CC-Cc--c-cCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH
Confidence 34689999 9 9999 655421 11 10 1 123456788889999997 5667899999999999999986543
Q ss_pred hhcc----------CCCEEEEcCCCChhhHHHHHHHh------hCCc-----EEEEeccCC--CC--------CCCHHHH
Q psy8850 81 FYKK----------RGKHIITVQTEHKSVLDSIRKLE------NDGF-----RVTYLKPKN--NG--------LITLSQL 129 (397)
Q Consensus 81 ~~~~----------~g~~vl~~~~~~~s~~~~~~~~~------~~g~-----~v~~v~~~~--~~--------~~d~~~l 129 (397)
...+ ++++|++.++.|+++......+. +.+. .+..+|.++ .. ..++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l 221 (449)
T 2cjg_A 142 WKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQA 221 (449)
T ss_dssp HHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHH
Confidence 2211 27899999998887554321111 1122 566677654 11 2456679
Q ss_pred HHHhc---CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccc
Q psy8850 130 EEKIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAH 197 (397)
Q Consensus 130 ~~~i~---~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~ 197 (397)
+++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+|++|+ ++.. ..+.....+|++++|
T Consensus 222 e~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s-- 299 (449)
T 2cjg_A 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG-- 299 (449)
T ss_dssp HHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--
T ss_pred HHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--
Confidence 98885 67899999988899997666 8999999999999999999998 3321 112222356877554
Q ss_pred cccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q psy8850 198 KIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES- 276 (397)
Q Consensus 198 K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 276 (397)
|.+ + +|+++++++..+.+.+....... ... ....|...+++..++++.+.+ +.+.+++.++++++++.|++.
T Consensus 300 K~l-~--iG~~~~~~~~~~~l~~~~~~~~~-~~~-t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~ 372 (449)
T 2cjg_A 300 KKT-Q--VCGVMAGRRVDEVADNVFAVPSR-LNS-TWGGNLTDMVRARRILEVIEA--EGLFERAVQHGKYLRARLDELA 372 (449)
T ss_dssp GGG-S--SEEEEECGGGGGSTTCTTTSTTS-SCC-SSSSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-c--EEEEEECHHHhhhhhhcccCCcc-ccc-CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHH
Confidence 954 3 79999987665543331111000 111 223455666666688887655 456778888888888888761
Q ss_pred --cCc-EEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850 277 --IEE-IYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 350 (397)
Q Consensus 277 --~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 350 (397)
++. +...... +.++.+.++.. ...++.+.|. ||.+.++. .++||+++
T Consensus 373 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------------~~~iRi~~ 425 (449)
T 2cjg_A 373 ADFPAVVLDPRGR----GLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----------------------ADTVRFRP 425 (449)
T ss_dssp HHSTTTSEEEEEE----TTEEEEECSSHHHHHHHHHHHHHTTEECEEET-----------------------TTEEEECC
T ss_pred hhCCCceeeEeec----cEEEEEEECChHHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEEC
Confidence 343 4333221 44666666531 2456666664 78777641 27899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 351 GRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 351 ~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
+..++++++++++++|+++++++
T Consensus 426 ~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 426 PLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 98899999999999999988654
No 208
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.94 E-value=2.2e-24 Score=207.07 Aligned_cols=330 Identities=12% Similarity=0.126 Sum_probs=217.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
+..+|.|++++.+++....... .. ....+...++.++++++++.+.+.++|++||++|++.+++.+...+.
T Consensus 69 Gh~~p~v~~A~~~~l~~~~~~~-----~~-~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g 142 (476)
T 3i5t_A 69 GYGRREIVDAMAHQAMVLPYAS-----PW-YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG 142 (476)
T ss_dssp CBCCHHHHHHHHHHHHHCCCCC-----TT-TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhccCcc-----cC-ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 4568999999999987632110 10 12234677889999999987777999999999999999998764321
Q ss_pred -cCCCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCC--CC-CCC--------HHHHHHHhc----CCc
Q psy8850 84 -KRGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKN--NG-LIT--------LSQLEEKIC----SDT 137 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~--~~-~~d--------~~~l~~~i~----~~~ 137 (397)
.++++|++..+.|++.......+... ...+..++... .+ ..+ +++|++++. +++
T Consensus 143 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~ 222 (476)
T 3i5t_A 143 RPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTI 222 (476)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred CCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCE
Confidence 12468888888888776554443210 11233344321 11 112 788998886 567
Q ss_pred eEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccc-cCcccccEEEecccc-ccCC-CCc
Q psy8850 138 ILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DIN-IQNYKVDLMSFSAHK-IYGP-KGI 205 (397)
Q Consensus 138 ~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~-~~~~~~d~~~~s~~K-~~g~-~g~ 205 (397)
++|+++.+++++|.+.+ +++|.++|++||++||+|++|+ +|.. ... .....+|++++| | +.|+ .++
T Consensus 223 aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~~pl 300 (476)
T 3i5t_A 223 AAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGYVPL 300 (476)
T ss_dssp EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTSSCC
T ss_pred EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcCCCcCe
Confidence 89999999999998666 8999999999999999999997 3221 122 333457888766 9 6554 468
Q ss_pred eEEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEE
Q psy8850 206 GALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIY 281 (397)
Q Consensus 206 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~ 281 (397)
|+++++++..+.+.+.... ......... ..+...+++..++++.+.+ +.+.+++.++.+++++.|++ + +.+.
T Consensus 301 g~v~~~~~i~~~~~~~~~~~~~~~~~~t~-~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~v~ 376 (476)
T 3i5t_A 301 GGLAISEAVLARISGENAKGSWFTNGYTY-SNQPVACAAALANIELMER--EGIVDQAREMADYFAAALAS-LRDLPGVA 376 (476)
T ss_dssp EEEEECHHHHHTTSGGGCTTCEECCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHT-TTTSTTEE
T ss_pred EEEEECHHHHHHHhcCCcccccccccCCC-CcCHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHH-HhcCCCeE
Confidence 9999987665555432100 000011122 3344556666678887654 45677788888888888875 4 3343
Q ss_pred EeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850 282 INGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (397)
.+... +.++.+.+.... ...+...+. |+.+.+. ++++|
T Consensus 377 ~v~~~----G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------g~~iR 428 (476)
T 3i5t_A 377 ETRSV----GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL------------------------GDLCV 428 (476)
T ss_dssp EEEEE----TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE------------------------TTEEE
T ss_pred EEEec----CceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec------------------------CCEEE
Confidence 33221 345556665321 234444444 6666542 27899
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850 348 FTIGRFTTEKEIDFTIKLLKMKVKKLREL 376 (397)
Q Consensus 348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 376 (397)
|+++..++++++++++++|+++++++.+.
T Consensus 429 i~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 429 ISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999888764
No 209
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.94 E-value=1.6e-25 Score=217.73 Aligned_cols=292 Identities=13% Similarity=0.057 Sum_probs=193.7
Q ss_pred CCcEEEeCChhHHHHHHHHHhH-hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhc
Q psy8850 58 PREIIWTSGATESNNLAIKGAA-HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKIC 134 (397)
Q Consensus 58 ~~~i~~~~g~t~a~~~~l~~l~-~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~ 134 (397)
+++|++|+|+++|+.+++.++. ..+.++||+|++++|.|+.+...... ...|.+++.++.+++ +.+|+++|++++.
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL-AQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHS-TTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHH-cCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 4689999999999999998742 11227899999999999999876543 334789999988743 4689999999888
Q ss_pred CCceEEEEecccCccccccc---HHHHHHHH--HhcCcEEEEecccccCcc-ccccCc--ccccEEEeccccccCCCC--
Q psy8850 135 SDTILVSVMLVNNEIGVIQP---ILEIGELC--RSKGVIFHCDAAQAVGKI-DINIQN--YKVDLMSFSAHKIYGPKG-- 204 (397)
Q Consensus 135 ~~~~~v~~~~~~~~tG~~~~---l~~i~~l~--~~~gi~livD~a~~~~~~-~~~~~~--~~~d~~~~s~~K~~g~~g-- 204 (397)
+++++|++++++||||.+++ +++|+++| +++|++||+|++|+.... +.++.. .+.++++.|++|.+|.+|
T Consensus 244 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 244 PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGC
T ss_pred CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcc
Confidence 88999999999999999998 45678888 789999999999984321 111111 146789999999777556
Q ss_pred ceEEEEecC-CCCcccccc------------ccC-----------------CccccccCCCCchhHHHHHH--HHHHHH-
Q psy8850 205 IGALYIRRN-PRTRIEAQI------------HGG-----------------GHEYGLRSGTLATHQIVGMG--EAFRLA- 251 (397)
Q Consensus 205 ~g~~~~~~~-~~~~~~~~~------------~~~-----------------~~~~~~~~~~~~~~~~~~l~--~al~~~- 251 (397)
+|+++++++ ..+.+.... ... .........+.+.....++. +...++
T Consensus 324 iG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 324 LGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 799999875 333321100 000 00000111223333333221 111222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----------------CChHH-HHHHhC
Q psy8850 252 --RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGES-LLMAIK 311 (397)
Q Consensus 252 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~l~ 311 (397)
..+.++.++.++++++.+.+.|.. ++.+..+ ..+.++++.++. .++.+ +...+.
T Consensus 404 ~~~~~~~~~r~~~~~r~~~l~~~L~~---~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 404 EADEYKHTLKQLIRRRETTLYRELGM---PPLRDEN---AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHGGGTS---SCCCCTT---BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCC---CcccCCC---CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence 234566777788888887777742 2221111 113445666542 12223 344443
Q ss_pred --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
||.+.+|..|.. ..+++||+++. .+++++++++++|+++++++.+
T Consensus 478 ~~gV~v~pG~~F~~------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 524 (546)
T 2zy4_A 478 ETGIVLLPGRGFGS------------------NRPSGRASLAN-LNEYEYAAIGRALRKMADELYA 524 (546)
T ss_dssp HHSCCCEESSCTTC------------------SSCEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEeCccccCC------------------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 999999987653 13789999984 6799999999999999888775
No 210
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.94 E-value=2.5e-25 Score=206.37 Aligned_cols=291 Identities=16% Similarity=0.146 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE--EEEcCCCChhhHHHHHHHhhCCcEEEEec
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLK 117 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~--vl~~~~~~~s~~~~~~~~~~~g~~v~~v~ 117 (397)
.+...+++++++++++.+. .++++||++|+.+++.++. .++++ |+++.+.|.+...........|.+++.+|
T Consensus 47 ~~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~ 120 (359)
T 3pj0_A 47 GAVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLG 120 (359)
T ss_dssp SHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECS
T ss_pred CHHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCCcEEEEeccceeeehhcchHHHhcCceEEecC
Confidence 3567899999999999874 4666899999999999887 45565 66666655544322111111289999998
Q ss_pred cCCCCCCCHHHHHHHhcCCceEEEEecccCcc-cccccHHH---HHHHHHhcCcEEEEecccccCccc------cccCcc
Q psy8850 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQPILE---IGELCRSKGVIFHCDAAQAVGKID------INIQNY 187 (397)
Q Consensus 118 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t-G~~~~l~~---i~~l~~~~gi~livD~a~~~~~~~------~~~~~~ 187 (397)
. +++.+|+++++++ .+++++|++++++||+ |.++|.++ |.++|++||++||+|+++..+... .++. .
T Consensus 121 ~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~ 197 (359)
T 3pj0_A 121 T-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC-A 197 (359)
T ss_dssp C-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-T
T ss_pred C-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh-c
Confidence 7 4577999999998 7889999999999998 78888655 499999999999999998644321 1111 2
Q ss_pred cccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 188 KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (397)
Q Consensus 188 ~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~ 266 (397)
+.|+++.|+|| +.++.| |+++.+++..+.+....... .......+....+++ .+++.. .+..+++.+++
T Consensus 198 ~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~a~~-~~l~~~----~~~~~~~~~~~ 267 (359)
T 3pj0_A 198 LFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRY----GGDLISLYPYILSAD-YYFEKR----IGKMAEYFEAA 267 (359)
T ss_dssp TCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHT----TCCCSCCHHHHHHHH-HHHHHH----GGGHHHHHHHH
T ss_pred cCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHh----CCCcchhHHHHHHHH-HHHHHH----HHHhHHHHHHH
Confidence 57899999999 566655 78777776655554321100 000111222222222 333322 23445677888
Q ss_pred HHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccc
Q psy8850 267 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDEL 341 (397)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (397)
+++.+.|++ ++++.+...+.. .+++++.++.. +..++.+.|. ||.+.+|..+.. .
T Consensus 268 ~~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~-----------------~ 327 (359)
T 3pj0_A 268 KGLAERFNS-CSGVKTVPEVPV--SNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS-----------------A 327 (359)
T ss_dssp HHHHHHHHT-STTEEEESSSCS--SSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE-----------------T
T ss_pred HHHHHHHhh-CCCceeeccCCc--ceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC-----------------C
Confidence 999999998 889887532221 45666777532 2456666665 999998854331 1
Q ss_pred cCceEEEeeCCC---CCHHHHHHHHHHHHHH
Q psy8850 342 AHSSIRFTIGRF---TTEKEIDFTIKLLKMK 369 (397)
Q Consensus 342 ~~~~iRi~~~~~---~~~~~i~~~~~~l~~~ 369 (397)
+..++|++++.. .+.+++++++++|.+.
T Consensus 328 ~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 328 DVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp TEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 136899988633 5788898888888764
No 211
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.93 E-value=1.7e-23 Score=199.83 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=206.1
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
+..+|.|++++.+++..... +.......+...+++++|+++++.+ .++++|++||++|++.+++.+... .+
T Consensus 79 Gh~~p~v~~A~~~~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~--~g 150 (453)
T 4ffc_A 79 GASHPAVAAAIADQATHFTH------TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA--TG 150 (453)
T ss_dssp CTTCHHHHHHHHHHHHHCSC------CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--HC
T ss_pred CCCCHHHHHHHHHHHHhccc------cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh--cC
Confidence 35689999999999876321 1111122356678999999999854 468999999999999999865422 24
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhC------C-----cEEEEeccCC----CCCCC--------HHHHHHHhcC-CceEEE
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLEND------G-----FRVTYLKPKN----NGLIT--------LSQLEEKICS-DTILVS 141 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~------g-----~~v~~v~~~~----~~~~d--------~~~l~~~i~~-~~~~v~ 141 (397)
+++|++.++.|++.......+... + ..+..+|.+. ...++ ++.|++.+.. ++++|+
T Consensus 151 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi 230 (453)
T 4ffc_A 151 RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAII 230 (453)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 578888888888776655544210 1 1455565541 11122 4667776654 456777
Q ss_pred EecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEe
Q psy8850 142 VMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR 211 (397)
Q Consensus 142 ~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~ 211 (397)
++.+++.+|.+.+ +++|+++|++||++||+|++|+ ++.. ..+.....+|++++| | +.++.++|+++++
T Consensus 231 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~ 308 (453)
T 4ffc_A 231 IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMA--KGIAGGMPLSAVTGR 308 (453)
T ss_dssp ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEE
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhh--hhhcCCcCeEEEEEC
Confidence 7766666677766 8999999999999999999987 3221 112222356777655 9 5444458999998
Q ss_pred cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCC
Q psy8850 212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNN 288 (397)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~ 288 (397)
++..+.+.+...+ ... ..+...+++..++++.+.+ +.+.++++++.+++++.|.+. ++.+......
T Consensus 309 ~~i~~~~~~~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-- 377 (453)
T 4ffc_A 309 AELMDAVYAGGLG------GTY-GGNPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLSALAEEVDIIGEVRGR-- 377 (453)
T ss_dssp HHHHTTSCTTSSC------CSS-SSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEE--
T ss_pred HHHHhhhcccCcC------CCC-CcCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee--
Confidence 7766655543222 112 2344555555577776654 234444555555555544431 4554433221
Q ss_pred CCCceEEEEecC-----C---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 289 RIPHNLNISFNF-----I---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 289 ~~~~~~~~~~~~-----~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
+.++.+.+.. . ...++...+. ||.+.++.. .++.+||+++..+++++
T Consensus 378 --g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~~~~~~t~e~ 434 (453)
T 4ffc_A 378 --GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT---------------------FGNVIRLLPPLVIGDDL 434 (453)
T ss_dssp --TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT---------------------TSCEEEECCCTTCCHHH
T ss_pred --ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC---------------------CCCEEEEECCCCCCHHH
Confidence 3466666632 1 1344555554 888876521 12789999999899999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKVKKLR 374 (397)
Q Consensus 359 i~~~~~~l~~~~~~~~ 374 (397)
+++++++|+++++++.
T Consensus 435 i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 435 LDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 212
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.93 E-value=3.8e-24 Score=200.30 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChhHHHHHHHHHhHhhhccCCC
Q psy8850 11 PRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 11 ~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~--~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
.+|++++.+.... ...++.. .|.++.. ...++++.+++++|.+. .+++ ++||++|+.+++.+++ ++||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~-~~~y~~~---~~~~Le~~lA~l~g~e~-alv~p~~~sGt~Ai~~al~all----~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPST-GYGYDDE---GRDTLERVYATVFKTEA-ALVRPQIISGTHAISTVLFGIL----RPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTSCSHHHHHHHHHHHHC----CTTC
T ss_pred HHHHHHHHHhhhhhhccCCCc-CCCCChh---HHHHHHHHHHHHhCCCc-EEEECCCccHHHHHHHHHHHhc----CCCC
Confidence 3566777665422 1223333 4544433 47789999999999873 3443 8899999999999887 8999
Q ss_pred EEEEcC-CCChhhHHHH-------HHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEec----ccCcccccccH
Q psy8850 88 HIITVQ-TEHKSVLDSI-------RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVML----VNNEIGVIQPI 155 (397)
Q Consensus 88 ~vl~~~-~~~~s~~~~~-------~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~----~~~~tG~~~~l 155 (397)
+|+++. +.|.++...+ ..+...|.+++.++.++++.+|++++++++++++++|++++ ++||+|.+.|+
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l 182 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKI 182 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHH
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccH
Confidence 999998 9899887655 23444599999999988899999999999999999999999 99999999999
Q ss_pred HHHHHHHHh--cCcEEEEecccccCccccccCcccccEEEeccccccCCCC---ceEEEEecCCCCccccccccCCcccc
Q psy8850 156 LEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYG 230 (397)
Q Consensus 156 ~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~ 230 (397)
++|+++|++ ||+++++|++|+.+....+....++|++++|+||.+|+.+ .|++++++++.+.+........ .+
T Consensus 183 ~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~--~g 260 (409)
T 3jzl_A 183 KEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPG--IG 260 (409)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTT--TG
T ss_pred HHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccc--cc
Confidence 999999999 9999999999986653333344579999999999544322 4999998766665544221100 00
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEecCC-ChHHHHH
Q psy8850 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFI-EGESLLM 308 (397)
Q Consensus 231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 308 (397)
...+. ......++...++ ..+.+.++..+++.++.+.|++ + ++.+...+.. ....++.+.+.+. ...++.+
T Consensus 261 ~~~g~-~~~~~~~~l~gl~----~~~~r~~~~~~~a~~la~~L~~-~-g~~v~p~~~~~~~~~i~~i~l~~~~~~~~~~~ 333 (409)
T 3jzl_A 261 REAGA-SLYSLLEMYQGFF----LAPHVTAQAIKGARFTAAMLAE-F-GVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQ 333 (409)
T ss_dssp GGCCC-CTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSCCEEECSCHHHHHHHHH
T ss_pred ccccc-cHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCCCCCccEEEEEEeCCHHHHHHHHH
Confidence 11111 1111122222332 2355677888899999999998 5 5566433221 2223666776532 1234555
Q ss_pred HhC
Q psy8850 309 AIK 311 (397)
Q Consensus 309 ~l~ 311 (397)
.|+
T Consensus 334 ~L~ 336 (409)
T 3jzl_A 334 AIQ 336 (409)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 213
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.93 E-value=2.6e-24 Score=204.81 Aligned_cols=314 Identities=13% Similarity=0.121 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..+|.|++++.+++..... . .+ ..+...++++.++++++ .++++++++||++|++.+++.+... .+++
T Consensus 71 ~~~p~v~~a~~~~~~~~~~---~-~~-----~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~--~~~~ 138 (434)
T 3l44_A 71 HAHPHITKAITTAAENGVL---Y-GT-----PTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAY--TGRT 138 (434)
T ss_dssp BTCHHHHHHHHHHHHHCSC---C-SS-----CCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHH--HCCC
T ss_pred CCCHHHHHHHHHHHHhCcC---C-CC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHh--hCCC
Confidence 4689999999999876211 0 11 12356778889999987 5678999999999999999976521 2668
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN 147 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~ 147 (397)
+|++.++.|++...........+. .+..+|.+ |+++|+++++ +++++|+++++++
T Consensus 139 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~ 213 (434)
T 3l44_A 139 KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVG 213 (434)
T ss_dssp EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCC
Confidence 999998888775533222110010 22333332 8999999987 4678888888888
Q ss_pred ccccccc----HHHHHHHHHhcCcEEEEecccccC---cc-ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850 148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG---KI-DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI 218 (397)
Q Consensus 148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~---~~-~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~ 218 (397)
++|.+.| +++|.++|++||++||+|++|+.. .. ..+.....+|++++| | +.++.++|+++++++..+.+
T Consensus 214 ~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~i~~~~ 291 (434)
T 3l44_A 214 NFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALG--KVIGGGLPIGAYGGKKEIMEQV 291 (434)
T ss_dssp TTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHTTB
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehh--hhhcCCcCeeeEEEcHHHHHhh
Confidence 8898887 999999999999999999999732 11 111222346776655 9 55555689998887765555
Q ss_pred ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN 295 (397)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 295 (397)
.+... . ........+...+++..++++.+.+ +++.+++.++++++++.|++. ++....... .+.++.
T Consensus 292 ~~~~~---~-~~~~t~~~~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~ 361 (434)
T 3l44_A 292 APLGP---A-YQAGTMAGNPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQAAKHNIDITLNR----LKGALT 361 (434)
T ss_dssp TTTSS---B-CCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE----ETTEEE
T ss_pred ccCCC---c-ccCCCCCcCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe----eccEEE
Confidence 43100 0 0011123455555666677776643 445566666666666666551 232222211 145666
Q ss_pred EEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850 296 ISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (397)
Q Consensus 296 ~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 359 (397)
+.+.... ..++...|. ||.+.++. ...+|+++ .++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~rl~~--~~t~e~i 416 (434)
T 3l44_A 362 VYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK-----------------------YEAWFLTT--EHTKEDI 416 (434)
T ss_dssp EEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST-----------------------TCCEECCT--TCCHHHH
T ss_pred EEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC-----------------------CCcEEEec--ccCHHHH
Confidence 6663211 134555554 78777652 14678864 4799999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8850 360 DFTIKLLKMKVKKLRE 375 (397)
Q Consensus 360 ~~~~~~l~~~~~~~~~ 375 (397)
++++++|+++++++++
T Consensus 417 ~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 417 EYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 214
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=1.1e-24 Score=205.85 Aligned_cols=283 Identities=13% Similarity=0.060 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHh-CCC-----CCcEE--EeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850 42 AIEKARNEVAQLI-YAD-----PREII--WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 113 (397)
Q Consensus 42 ~~~~~~~~la~~~-~~~-----~~~i~--~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v 113 (397)
...++++.+++++ +.. +++|. .+.|+++|+.++... ...+.++||+|+++.|+|+++...+... |.++
T Consensus 80 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~-~~~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~ 155 (409)
T 4eu1_A 80 GIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDL-LNRFVANCNRIYGPDVGYPNHESIFAKA---GMEL 155 (409)
T ss_dssp CCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHH-GGGTSSSCCEEEEESSCCTHHHHHHHHT---TCEE
T ss_pred CcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHH-HHHhcCCCCEEEEeCCCcHhHHHHHHHc---CCeE
Confidence 4567888888876 654 56774 499999999887553 2233378899999999999998888777 9999
Q ss_pred EEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCccc----
Q psy8850 114 TYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKID---- 181 (397)
Q Consensus 114 ~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~~---- 181 (397)
+.+|.+ +++.+|+++++++++ ++++++++++++||||.+++. ++|+++|++||+++|+|++|+.....
T Consensus 156 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~ 235 (409)
T 4eu1_A 156 TPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDY 235 (409)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred EEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCccc
Confidence 999983 457899999999996 356777889999999999995 55999999999999999998733211
Q ss_pred ----c-cc-CcccccEEEeccccccCCCC--ceEE--EEec-C----CCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850 182 ----I-NI-QNYKVDLMSFSAHKIYGPKG--IGAL--YIRR-N----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE 246 (397)
Q Consensus 182 ----~-~~-~~~~~d~~~~s~~K~~g~~g--~g~~--~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (397)
+ .+ ......+++.|++|.+|..| +|++ ++.+ + ....+..... .....++.....+...
T Consensus 236 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~ 308 (409)
T 4eu1_A 236 DAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIR-------PMYNNPPLYGAWVVSS 308 (409)
T ss_dssp HTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHH-------HHHSSCCHHHHHHHHH
T ss_pred chHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHh-------hhcCCCChHHHHHHHH
Confidence 1 11 11234578899999777555 6776 4443 2 2222221110 1112334444444545
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCc---EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850 247 AFRLA------RIEMKEELKRILFLQKRLYNGLMESIEE---IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV 315 (397)
Q Consensus 247 al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~ 315 (397)
+++.. .+.+++.++++.++++++.+.|++ ++. +.+..+.. +.+++ .+.+...+...+. ||.+
T Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~---~~~~~---~~~~~~~~~~ll~~~gv~v 381 (409)
T 4eu1_A 309 ILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA-CGSVHDWSHIERQV---GMMAY---TGLTREQVELLRSEYHIYM 381 (409)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHSC---SSEEE---CCCCHHHHHHHHHHHCEEC
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcceecCCc---eEEEE---eCCCHHHHHHHHHcCCEEE
Confidence 55532 345778889999999999999988 421 33333322 22222 2334433333332 7877
Q ss_pred cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV 370 (397)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (397)
.+| .||+++. .+++++++++++|++++
T Consensus 382 ~p~---------------------------~Ri~~~~-~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 382 TLN---------------------------GRAAVSG-LNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CTT---------------------------CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred cCC---------------------------CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence 653 3888875 46677999999998765
No 215
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.93 E-value=1.9e-23 Score=199.48 Aligned_cols=322 Identities=13% Similarity=0.069 Sum_probs=204.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR 85 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~ 85 (397)
+..+|.+++++.+++.... . +.......+...+++++++++++.. .++++|++||++|++.+++.+... .+
T Consensus 76 Gh~~p~v~~A~~~~~~~~~-~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~--~g 147 (451)
T 3oks_A 76 GNSAPKVVEAVRSQVGDFT-H-----TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH--TH 147 (451)
T ss_dssp CTTCHHHHHHHHHHHTTCS-C-----CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH--HC
T ss_pred CCCCHHHHHHHHHHHHhcc-c-----ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh--cC
Confidence 3468999999999987632 1 1111122345678899999998754 468999999999999999876522 24
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhC-----------CcEEEEeccCCC------C-------CCCHHHHHHHhc-----CC
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLEND-----------GFRVTYLKPKNN------G-------LITLSQLEEKIC-----SD 136 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~-----------g~~v~~v~~~~~------~-------~~d~~~l~~~i~-----~~ 136 (397)
+++|++.++.|++.......+... ...+..+|.+.. | ..+++.+++.+. ++
T Consensus 148 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (451)
T 3oks_A 148 KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADN 227 (451)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGG
T ss_pred CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCC
Confidence 578888888888776555444110 114566665411 0 012444444443 35
Q ss_pred ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCce
Q psy8850 137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIG 206 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g 206 (397)
+++|+++.+++.+|.+.+ +++|.++|++||++||+|++|+ ++.. ..+.....+|++++ +| +.++..+|
T Consensus 228 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G~~iG 305 (451)
T 3oks_A 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVT--AKGIAGGLPLS 305 (451)
T ss_dssp EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCE
T ss_pred EEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeee--hhhhhCCcceE
Confidence 678888877777788776 8999999999999999999997 3221 12222235677755 49 54444589
Q ss_pred EEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEe
Q psy8850 207 ALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYIN 283 (397)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~ 283 (397)
+++++++..+.+.+...+ ... ..+...+++..++++.+.+ .++.++++++.+++++.|.+. ++.+...
T Consensus 306 ~v~~~~~~~~~~~~~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 376 (451)
T 3oks_A 306 AVTGRAEIMDSPHVSGLG------GTY-GGNPIACAAALATIETIES--EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV 376 (451)
T ss_dssp EEEEEHHHHTCSCTTSBC------CSS-SSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred EEEECHHHHhhhcCCCcC------CCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 999987766655443222 112 3344555555577877654 244455555555555555441 4554433
Q ss_pred CCCCCCCCceEEEEecC-----C---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC
Q psy8850 284 GDMNNRIPHNLNISFNF-----I---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 353 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~ 353 (397)
... +.++.+.+.. . ...++...+. ||.+.++.. .++.+||+++..
T Consensus 377 ~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~~~~~ 431 (451)
T 3oks_A 377 RGR----GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT---------------------YGNVVRFLPPLS 431 (451)
T ss_dssp EEE----TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT---------------------TSCEEEECCCTT
T ss_pred EEe----eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC---------------------CCCEEEEECCCC
Confidence 221 3466666632 1 1344555554 888776521 127899999988
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8850 354 TTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 354 ~~~~~i~~~~~~l~~~~~~ 372 (397)
++++++++++++|++++++
T Consensus 432 ~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 432 IGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998753
No 216
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.93 E-value=4e-24 Score=200.77 Aligned_cols=283 Identities=15% Similarity=0.064 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHh-hccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChhHHHHHHHHHhHhhhccCCC
Q psy8850 11 PRVVDKMIPYLR-VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 11 ~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~--~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
+.|++++.+... ....++.. .|.++.. ...++++.+++++|.+.. +++ ++||++|+.+++.+++ ++||
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~-gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pGD 116 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSS-GYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPGN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTTC
T ss_pred HHHHHHHHHhchhHHhcCCCC-CCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCCC
Confidence 456666666532 12223333 4554433 377889999999998743 444 7899999999999887 8999
Q ss_pred EEEEcC-CCChhhHHHH--------HHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEec----ccCccccc
Q psy8850 88 HIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVI 152 (397)
Q Consensus 88 ~vl~~~-~~~~s~~~~~--------~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~----~~~~tG~~ 152 (397)
+|++++ +.|+++...+ ..+...|.+++.++.+++|.+|+++++++++ +++++|++++ ++||+|.+
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i 196 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI 196 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH
Confidence 999998 9999887655 3344459999999998888999999999998 7899999999 99999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEecccccCccccccCcccccEEEeccccccCC---CCceEEEEecCCCCccccccccCCc
Q psy8850 153 QPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP---KGIGALYIRRNPRTRIEAQIHGGGH 227 (397)
Q Consensus 153 ~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~g~g~~~~~~~~~~~~~~~~~~~~~ 227 (397)
.|+++|+++|++ +|+++++|++|+.+....+....++|++++|+||.+|+ ...|++++++++.+.+........
T Consensus 197 ~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~- 275 (427)
T 3i16_A 197 EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG- 275 (427)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT-
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc-
Confidence 999999999999 99999999999876533333345789999999995443 235999998776666544221100
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEecCCC-hHH
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFIE-GES 305 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~ 305 (397)
.+... .+.......+...++ ....+.++..+++.++.+.|++ + ++.+...+.. ....++.|.+.+.+ ..+
T Consensus 276 -~g~~~-~~~~~~a~~~l~gl~----~~~~r~~~~~~~a~~la~~L~~-~-g~~V~p~~~~~~~~~i~~i~l~~~~~~~~ 347 (427)
T 3i16_A 276 -IGGEC-GSTFGVVRSMYQGLF----LAPHISMEALKGAILCSRIMEL-A-GFEVMPKYDEKRSDIIQSIKFNDKDKLIE 347 (427)
T ss_dssp -TGGGC-CCCTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSCEEEECSSHHHHHH
T ss_pred -cCccC-CccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCCccEEEEEEECCHHHHHH
Confidence 00001 111110111112222 2356778888999999999998 5 4455433221 11226667765321 234
Q ss_pred HHHHhC
Q psy8850 306 LLMAIK 311 (397)
Q Consensus 306 ~~~~l~ 311 (397)
+.+.|+
T Consensus 348 f~~~l~ 353 (427)
T 3i16_A 348 FCKGIQ 353 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 455554
No 217
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.93 E-value=5.1e-26 Score=215.55 Aligned_cols=279 Identities=13% Similarity=0.084 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHh--------HhhhccCCCEEEEcCCCChhhHHHHHHHhh
Q psy8850 43 IEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA--------AHFYKKRGKHIITVQTEHKSVLDSIRKLEN 108 (397)
Q Consensus 43 ~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l--------~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~ 108 (397)
..++++.++++++ +++++|++|+|+++|+.+++.++ . ++||+|+++.|+|+.+...+...
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~-- 175 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTKYF-- 175 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHHHc--
Confidence 4667777777775 57789999999999999999998 6 78999999999999998888776
Q ss_pred CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccc-cccCcc
Q psy8850 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-INIQNY 187 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~-~~~~~~ 187 (397)
|.+++.. .+|+++|++++++++++|++++|+||||.+++ + +++ ++..+.|+++.....+ .++. .
T Consensus 176 -g~~~~~~------~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~ 240 (427)
T 2hox_A 176 -DKKGYVW------AGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-A 240 (427)
T ss_dssp -CBTTEEE------EEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-B
T ss_pred -CCeeeee------cCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-C
Confidence 7766533 35788999988888999999999999999999 4 233 5678889876532211 1221 3
Q ss_pred cccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHH-----------H
Q psy8850 188 KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----------I 253 (397)
Q Consensus 188 ~~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-----------~ 253 (397)
+.+++++|+||.+|.+| +|+++++ ++....+...... ...+. +.....++..+++... +
T Consensus 241 ~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~------~~~~~-~~~~q~a~~~~L~~~~~~l~~~~~~~~~ 313 (427)
T 2hox_A 241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK------NTEGT-PRETQLRSLKVLKEVVAMVKTQKGTMRD 313 (427)
T ss_dssp CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH------HTSSC-CHHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred CceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHh------cCCCC-CHHHHHHHHHHhhcchhhhccccchhHH
Confidence 67999999999777666 7999995 5555544433211 11223 3333333335555322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcEEE--eC-CC--------CCCCCceEEEEecCCChHHHHHHh---CCcEecccC
Q psy8850 254 EMKEELKRILFLQKRLYNGLMESIEEIYI--NG-DM--------NNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGS 319 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~ 319 (397)
.+.+.+++++++++++.+.|++ ++++.+ .. +. ....+.++++.++. +..++...+ .||.+.+|.
T Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~ 391 (427)
T 2hox_A 314 LNTFGFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGV 391 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCC
Confidence 3556778899999999999998 777765 11 11 01124556677764 334444443 399999987
Q ss_pred ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
.|.. ..++||||++. +++++++++++|+++++
T Consensus 392 ~f~~------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 392 GFEA------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp GGTS------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred ccCC------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 5532 13889999995 88999999999998864
No 218
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.92 E-value=9.5e-24 Score=201.95 Aligned_cols=318 Identities=14% Similarity=0.087 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
+.++.+++++.+.+.... . + + ...+...++.++++++++ .++++++++||++|+++++++.. .+.+ ++
T Consensus 73 ~~~~~v~~a~~~~~~~~~---~---~--~-~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar-~~~~-~~ 140 (453)
T 2cy8_A 73 HGHPRVNAAIAEALSHGV---Q---Y--A-ASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVAR-AFTG-RR 140 (453)
T ss_dssp BTCHHHHHHHHHHHTTTC---S---S--C-SSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHH-HHHC-CC
T ss_pred CCCHHHHHHHHHHHHhCC---C---C--C-CCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHH-HhhC-CC
Confidence 468999999999986511 1 1 1 123466778888888876 56789999999999999999721 1114 46
Q ss_pred EEEEcCCCChhhHHHHHHHh-h-------CCc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCccc
Q psy8850 88 HIITVQTEHKSVLDSIRKLE-N-------DGF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIG 150 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~-~-------~g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG 150 (397)
+|++.++.|+++........ . .|. .+..++. .|+++|+++++ +++++|+++++++++|
T Consensus 141 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG 215 (453)
T 2cy8_A 141 MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFG 215 (453)
T ss_dssp EEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHH
T ss_pred EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCC
Confidence 78888888876554332210 0 132 2333443 38999999987 4778888888888899
Q ss_pred cccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc
Q psy8850 151 VIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 221 (397)
Q Consensus 151 ~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~ 221 (397)
.+.| +++|.++|++||++||+|++|+.... ..+.....+|++ |++| +.++.++|+++++++..+.+...
T Consensus 216 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~ 293 (453)
T 2cy8_A 216 VTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSRG 293 (453)
T ss_dssp TEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSSC
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhccc
Confidence 9887 99999999999999999999982211 111112246776 5559 54434589999987655554431
Q ss_pred cccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEE
Q psy8850 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS 297 (397)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 297 (397)
..+. . ........+...+++..++++. + . +++.+++.++++++++.|++. ++....... . +.++++.
T Consensus 294 ~~~~-~-~~~~t~~~n~~~~aa~~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~---g~~~~i~ 364 (453)
T 2cy8_A 294 SDRK-V-LHQGTFTGNPITAAAAIAAIDTIL-E--DDVCAKINDLGQFAREAMNHLFARKGLNWLAYG-R---FSGFHLM 364 (453)
T ss_dssp C-----------CCCCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-C---TTEEEEE
T ss_pred cCCC-c-eeCCCCCCCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-e---eeEEEEE
Confidence 0000 0 0011123455556666677876 5 2 456677788888888888761 132221211 1 4567777
Q ss_pred ecC-----C------------C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850 298 FNF-----I------------E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (397)
Q Consensus 298 ~~~-----~------------~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~ 355 (397)
++. . + ..++...|. ||.+.++ +.+|++ ..++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-------------------------~~~~l~--~~~t 417 (453)
T 2cy8_A 365 PGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR-------------------------GSVFLS--AQHE 417 (453)
T ss_dssp ETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT-------------------------TEEECC--TTCC
T ss_pred EeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC-------------------------CCEEee--ccCC
Confidence 763 1 1 345655554 7766321 235654 5679
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccc
Q psy8850 356 EKEIDFTIKLLKMKVKKLRELSPLW 380 (397)
Q Consensus 356 ~~~i~~~~~~l~~~~~~~~~~~~~~ 380 (397)
++++++++++|+++++++++....+
T Consensus 418 ~~~i~~~l~~l~~~l~~~~~~~~~~ 442 (453)
T 2cy8_A 418 REHVEHLVTTFDRVLDRLADENLLS 442 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999887754444
No 219
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.92 E-value=8.2e-25 Score=207.80 Aligned_cols=311 Identities=14% Similarity=0.070 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..+|.+++++.+++.... .+ ++ ..+...+++++++++++ +++++++++||++|++.+++.... + .+++
T Consensus 68 ~~~p~v~~a~~~~~~~~~------~~--~~-~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~-~-~~~~ 135 (427)
T 3fq8_A 68 HAHPEVIEALKVAMEKGT------SF--GA-PCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRA-Y-TGRD 135 (427)
T ss_dssp BTCHHHHHHHHHHHTTCS------CC--SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCC
T ss_pred CCCHHHHHHHHHHHHhCC------Cc--CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHH-h-hCCC
Confidence 358999999999987621 11 11 23567788999999997 567899999999999999964332 2 2347
Q ss_pred EEEEcCCCChhhHHHHHHHhh-----------CCc------EEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccC
Q psy8850 88 HIITVQTEHKSVLDSIRKLEN-----------DGF------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNN 147 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~-----------~g~------~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~ 147 (397)
+|++.++.|++.......... .|+ .+..+|.+ |+++|++++++ ++++|+++++++
T Consensus 136 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~ 210 (427)
T 3fq8_A 136 KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVG 210 (427)
T ss_dssp EEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBC
T ss_pred EEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcC
Confidence 788877777654322111100 011 23444443 89999999976 788999999999
Q ss_pred ccccccc----HHHHHHHHHhcCcEEEEecccccC---c-cccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850 148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG---K-IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI 218 (397)
Q Consensus 148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~---~-~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~ 218 (397)
++|.+.+ +++|.++|++||++||+|++|+.. . ...+.....+|++++| | +.++..+|+++++++..+.+
T Consensus 211 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G~~~~~~~~~~~~ 288 (427)
T 3fq8_A 211 NSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLV 288 (427)
T ss_dssp TTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCEEEEECHHHHTTB
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhhh--hhhhCCcceEEEEEcHHHHHhh
Confidence 9999999 999999999999999999999822 1 1112222346776555 9 44333489999987765555
Q ss_pred ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN 295 (397)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 295 (397)
.+.... ......+.+...+++..++++.+.+ +.+.++++++.+++++.|.+. ++...... ..+.++.
T Consensus 289 ~~~~~~----~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~ 358 (427)
T 3fq8_A 289 APAGPM----YQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQETGHAACGG----QVSGMFG 358 (427)
T ss_dssp TTTSSB----CCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EETTEEE
T ss_pred ccCCCc----cccCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE----EeeeEEE
Confidence 432100 0011112355666666677776543 345566666666666666551 11111111 1144556
Q ss_pred EEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850 296 ISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (397)
Q Consensus 296 ~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 359 (397)
+.+.... ..++...+. |+.+.++. ..|++++..++++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-------------------------~~r~~~~~~~t~e~i 413 (427)
T 3fq8_A 359 FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ-------------------------FEAGFTSLAHTEEDI 413 (427)
T ss_dssp EESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-------------------------TSCEECCTTCCHHHH
T ss_pred EEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC-------------------------CCCEEeeCcCCHHHH
Confidence 6654321 234555554 77777652 115556666899999
Q ss_pred HHHHHHHHHHHHH
Q psy8850 360 DFTIKLLKMKVKK 372 (397)
Q Consensus 360 ~~~~~~l~~~~~~ 372 (397)
++++++|++++++
T Consensus 414 ~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 414 DATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 220
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.92 E-value=4.9e-24 Score=202.83 Aligned_cols=311 Identities=14% Similarity=0.076 Sum_probs=203.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..++.+.+++.+.+.... .. .+ ..+...++++.++++++ ..+++++++||++|+++++++.. .+ .+++
T Consensus 72 ~~~~~v~~a~~~~~~~~~---~~-~~-----~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar-~~-~~~~ 139 (434)
T 2epj_A 72 HKHPRVLEAVEEALARGW---LY-GA-----PGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLAR-GY-TGRD 139 (434)
T ss_dssp BTCHHHHHHHHHHHHTCS---CC-SS-----CCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHH-HH-HCCC
T ss_pred CCCHHHHHHHHHHHHhCC---CC-CC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH-Hh-hCCC
Confidence 468999999999987621 11 11 23456779999999995 45689999999999999998632 11 2456
Q ss_pred EEEEcCCCChhhHHHHHHH-----------hhCCc------EEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccC
Q psy8850 88 HIITVQTEHKSVLDSIRKL-----------ENDGF------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNN 147 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~-----------~~~g~------~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~ 147 (397)
+|++.++.|++........ ...|. .+..+|.+ |+++|++++++ ++++|+++++++
T Consensus 140 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~ 214 (434)
T 2epj_A 140 LILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPVIA 214 (434)
T ss_dssp EEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred eEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 7777778777644321100 00132 34555543 89999999873 788888888888
Q ss_pred ccccccc----HHHHHHHHHhcCcEEEEecccccCcc-c---cccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850 148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI-D---INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI 218 (397)
Q Consensus 148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~-~---~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~ 218 (397)
++|.+.| +++|.++|++||+++|+|++|+.... . .+.....+|++ |++| +.++..+|+++++++..+.+
T Consensus 215 ~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l 292 (434)
T 2epj_A 215 NAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVMSLL 292 (434)
T ss_dssp SSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTB
T ss_pred CCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHHHhh
Confidence 8999888 99999999999999999999982111 1 11112347776 5559 54433479999987655554
Q ss_pred ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcEEEeCCCCCCCCceE
Q psy8850 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI----EEIYINGDMNNRIPHNL 294 (397)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~ 294 (397)
.+.. .... ......+...+++..++++.+.+ +++.++++++++++++.|++ + +....... .+.++
T Consensus 293 ~~~~---~~~~-~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~----~g~~~ 361 (434)
T 2epj_A 293 TPQG---KVFN-AGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASE-VLDRTGLPYTINR----VESMM 361 (434)
T ss_dssp TTTS---SBCC-CCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH-HHHHHTCCEEEEE----ETTEE
T ss_pred ccCC---Cccc-CCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHhhCCCcEEEEE----eeeEE
Confidence 4311 0000 11113455566666678887654 45677788888888888876 3 22111111 14567
Q ss_pred EEEecCC--------------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 295 NISFNFI--------------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 295 ~~~~~~~--------------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
.+.++.. ...++...|. ||.+.++. ...+|++ ..+++++
T Consensus 362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~--~~~t~e~ 416 (434)
T 2epj_A 362 QLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN-----------------------LEAVFTG--LPHQGEA 416 (434)
T ss_dssp EEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----------------------TSCEECC--TTCSHHH
T ss_pred EEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC-----------------------CCcEEEe--ccCCHHH
Confidence 7777641 1345666654 88887652 0234554 5679999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKVKKL 373 (397)
Q Consensus 359 i~~~~~~l~~~~~~~ 373 (397)
+++++++|+++++++
T Consensus 417 i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 417 LEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 221
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.92 E-value=2.9e-24 Score=201.43 Aligned_cols=327 Identities=13% Similarity=0.072 Sum_probs=210.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C--CCCCc--EEEeCChhHHHHHHHH
Q psy8850 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y--ADPRE--IIWTSGATESNNLAIK 76 (397)
Q Consensus 2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~--~~~~~--i~~~~g~t~a~~~~l~ 76 (397)
|..+.++..+.|++|.+....... .+ +|....+..++++++++++ | .+.+. .+.|.|+|.|+..++.
T Consensus 56 d~~g~~~vl~~Vk~A~~~~~~~~~------~~--~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~ 127 (420)
T 4h51_A 56 DEQGRPYPLRVVRKAEQLLLDMNL------DY--EYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAK 127 (420)
T ss_dssp CTTSCBCCCHHHHHHHHHHHHTTC------CC--CCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCC------CC--CCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHH
Confidence 334455667899999877765411 11 1223346778888888875 3 22222 4558899999998888
Q ss_pred HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCccc
Q psy8850 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIG 150 (397)
Q Consensus 77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG 150 (397)
.+...+.++||+|++++|+|+++...+... |.+ +...+.. .++.+|.+.+.+.+. +++++++...+|||||
T Consensus 128 ~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a---G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG 204 (420)
T 4h51_A 128 LLTRVFDAETTPIYLSDPTWPNHYGVVKAA---GWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTG 204 (420)
T ss_dssp HHTTTSCTTTSCEEEEESCCTHHHHHHHHT---TCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTC
T ss_pred HHHHhcCCCCCEEEEecCCchhHHHHHHHc---CCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCC
Confidence 777666689999999999999999888887 775 4444432 455678888887764 5778889999999999
Q ss_pred cccc---HHHHHHHHHhcCcEEEEecccccCc---ccccc-------CcccccEEEeccccccCCCC--ceEEEEecCCC
Q psy8850 151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGK---IDINI-------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 215 (397)
Q Consensus 151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~---~~~~~-------~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~ 215 (397)
..++ +++|+++|++++++++.|++|.... ...+. ......+++.|++|.++..| +|++++..+..
T Consensus 205 ~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~ 284 (420)
T 4h51_A 205 VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDK 284 (420)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCH
T ss_pred CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCH
Confidence 9988 5788999999999999999986221 11110 11134578899999666555 89988876544
Q ss_pred CccccccccCCccccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---EEEeCCC
Q psy8850 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE---IYINGDM 286 (397)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~ 286 (397)
..............+...+.++..+.......+. .+.+.++.++++++++++.|.+.|++ +.. +..+.++
T Consensus 285 ~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~-~g~~~~~~~i~~q 363 (420)
T 4h51_A 285 TKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLR-LQTPGSWEHVINQ 363 (420)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCTHHHHC
T ss_pred HHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCeecCC
Confidence 4322211100000111223344444333333332 23445778889999999999999988 321 1111222
Q ss_pred CCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850 287 NNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 364 (397)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 364 (397)
.+++ .+-+.+.++ ++.|+ +|.+.++ + |||+.. .++++|+++++
T Consensus 364 ----~GmF--~~~gls~e~-v~~L~e~~Vy~~~~-------------------------g--Ris~Ag-l~~~ni~~~a~ 408 (420)
T 4h51_A 364 ----IGMF--SFLGLSKAQ-CEYCQNHNIFITVS-------------------------G--RANMAG-LTHETALMLAQ 408 (420)
T ss_dssp ----CSSE--EECCCCHHH-HHHHHHTTEECCTT-------------------------C--EEEGGG-CCHHHHHHHHH
T ss_pred ----CceE--EecCcCHHH-HHHHHhCCEEEcCC-------------------------C--EEEecc-CCHHHHHHHHH
Confidence 2333 333455544 34554 6766543 2 999975 57999999999
Q ss_pred HHHHHHHHHHh
Q psy8850 365 LLKMKVKKLRE 375 (397)
Q Consensus 365 ~l~~~~~~~~~ 375 (397)
+|.++++++.+
T Consensus 409 aI~~vvr~i~r 419 (420)
T 4h51_A 409 TINDAVRNVNR 419 (420)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHhhc
Confidence 99999988765
No 222
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.92 E-value=6.3e-23 Score=192.62 Aligned_cols=270 Identities=14% Similarity=0.066 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChhHHHHHHHHHhHhhhccCCC
Q psy8850 11 PRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 11 ~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~--~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
+.|++++.+...... ..... .|.++.. ...++++.+++++|.+. .+++ ++||++|+.+++.+++ ++||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~-gy~Y~~~---g~~~Le~~lA~l~g~e~-alv~p~~~sGt~A~~~al~all----~pGD 117 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSS-GYGYNDI---GRDSLDRVYANIFNTES-AFVRPHFVNGTHAIGAALFGNL----RPND 117 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTCCSHHHHHHHHHHHTC----CTTC
T ss_pred HHHHHHHHHHHHHHHhcccCc-CCCCCch---hHHHHHHHHHHHhCCCc-eEEeCCCCcHHHHHHHHHHHhc----CCCC
Confidence 456666665533211 11122 4444333 37889999999999873 2443 7899999999999988 8999
Q ss_pred EEEEcC-CCChhhHHHH--------HHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEec----ccCccccc
Q psy8850 88 HIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVI 152 (397)
Q Consensus 88 ~vl~~~-~~~~s~~~~~--------~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~----~~~~tG~~ 152 (397)
+|++++ +.|+++...+ ..+...|.+++.++. +++.+|+++++++++ +++++|++++ ++||+|.+
T Consensus 118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v 196 (427)
T 3hvy_A 118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRI 196 (427)
T ss_dssp EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCH
T ss_pred EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccH
Confidence 999998 9998887544 233344999999998 678899999999998 8999999999 99999999
Q ss_pred ccHHHHHHHHHh--cCcEEEEecccccCccccccCcccccEEEeccccccCC---CCceEEEEecCCCCccccccccCCc
Q psy8850 153 QPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP---KGIGALYIRRNPRTRIEAQIHGGGH 227 (397)
Q Consensus 153 ~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~g~g~~~~~~~~~~~~~~~~~~~~~ 227 (397)
.|+++|+++|++ +|+++++|++|+.+.........++|++++|+||.+|+ ...|++++++++.+.+........
T Consensus 197 ~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~- 275 (427)
T 3hvy_A 197 AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPG- 275 (427)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT-
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCC-
Confidence 999999999999 89999999999876532233345789999999994443 224999998776666544221100
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEec
Q psy8850 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFN 299 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 299 (397)
.+...+ ++......+...++ ..+.+.++..+++.++.+.|++ + ++.+...+.. ....++.+.+.
T Consensus 276 -~g~~~~-~~~~~a~~~~~gl~----~~~~r~~~~~~~a~~la~~L~~-~-g~~V~p~~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 276 -IGGECG-STFGVMRSLYEGLF----MAPHVTIEAVKGAVFCARIMEL-A-GFDVLPKYNDKRTDIIQAIKFN 340 (427)
T ss_dssp -TGGGCC-CCTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSEEEEECS
T ss_pred -cccccC-CCHHHHHHHHHhHh----HHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCCceEEEEEeCC
Confidence 001111 11111121212222 2355777888899999999998 4 4566443221 22226666665
No 223
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.92 E-value=6.3e-24 Score=201.75 Aligned_cols=311 Identities=14% Similarity=0.093 Sum_probs=199.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..+|.|++++.+++..... + + ...+...++++.++++++ ..+++++++||++|++.+++.+... .+++
T Consensus 69 ~~~p~v~~A~~~~~~~~~~------~--~-~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~--~~~~ 136 (429)
T 3k28_A 69 HANDRVVEALKAVAERGTS------F--G-APTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGY--TGRN 136 (429)
T ss_dssp BSCHHHHHHHHHHHHHCSC------C--S-SCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH--HTCC
T ss_pred CCCHHHHHHHHHHHhhCcC------c--C-CCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHh--hCCC
Confidence 4689999999999876221 1 1 112456788899999987 5678999999999999999876522 2567
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN 147 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~ 147 (397)
+|++.++.|++...........+. .+..+|.+ |+++++++++ +++++|+++.+++
T Consensus 137 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~ 211 (429)
T 3k28_A 137 KILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAG 211 (429)
T ss_dssp EEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred EEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCC
Confidence 888888877654432211110011 22333332 8999999887 4678888988888
Q ss_pred ccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850 148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI 218 (397)
Q Consensus 148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~ 218 (397)
++|.+.+ +++|.++|++||++||+|++|..... ..+.....+|++++| | +.++.++|+++++++..+.+
T Consensus 212 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~~~~~~ 289 (429)
T 3k28_A 212 NMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLG--KVIGGGLPVGAYGGKAEIMRQV 289 (429)
T ss_dssp TTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTB
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceehhh--hhhcCCCCeEEEEEcHHHHhhh
Confidence 8899888 99999999999999999999962210 111122346776655 9 54444689999987665555
Q ss_pred ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN 295 (397)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 295 (397)
.+... ... ......+...+++..++++... ++..+++.++++++++.|++. .+....... .+.++.
T Consensus 290 ~~~~~---~~~-~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~ 358 (429)
T 3k28_A 290 APSGP---IYQ-AGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEKHGIPHHINR----AGSMIG 358 (429)
T ss_dssp TTTSS---BCC-CCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEE
T ss_pred ccCCC---ccc-cCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEe----eccEEE
Confidence 33110 000 1112344455555556776543 566777777777777777662 122211111 134555
Q ss_pred EEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850 296 ISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (397)
Q Consensus 296 ~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 359 (397)
+.+...+ ..++.+.+. ||.+.++. .+.+|+++ .++++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~r~~~--~~t~e~i 413 (429)
T 3k28_A 359 IFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ-----------------------FEGLFLST--VHSDADI 413 (429)
T ss_dssp EESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----------------------TSCBCCCT--TCCHHHH
T ss_pred EEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC-----------------------CCCEEEEC--CCCHHHH
Confidence 5553211 144555554 77777642 15678764 4799999
Q ss_pred HHHHHHHHHHHHHH
Q psy8850 360 DFTIKLLKMKVKKL 373 (397)
Q Consensus 360 ~~~~~~l~~~~~~~ 373 (397)
++++++|+++++++
T Consensus 414 ~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 414 EATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 224
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.92 E-value=5.1e-23 Score=195.49 Aligned_cols=311 Identities=14% Similarity=0.108 Sum_probs=193.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..+|++++++.+++..... . .+ ..+...++++.++++++ ..+++++++||++|++.+++.+.. + .+++
T Consensus 69 ~~~p~v~~A~~~~~~~~~~---~-~~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~-~-~~~~ 136 (429)
T 4e77_A 69 HNHPAIRQAVIEAVERGLS---F-GA-----PTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARG-Y-TGRD 136 (429)
T ss_dssp BTCHHHHHHHHHHHTTCSC---C-SS-----CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCC
T ss_pred CCCHHHHHHHHHHHHhCcc---c-CC-----CCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHH-h-hCCC
Confidence 3689999999999876221 1 11 12466788999999987 567899999999999999985432 2 2456
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN 147 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~ 147 (397)
+|++..+.|++...........+. .+..++.+ |+++|+++++ +++++|+++.+++
T Consensus 137 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~ 211 (429)
T 4e77_A 137 KIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYPQEVACIIVEPVAG 211 (429)
T ss_dssp EEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHSTTTEEEEEECSSBC
T ss_pred EEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcCCCEEEEEECCccC
Confidence 788877777766542221110011 12222222 8999999987 3677888877777
Q ss_pred ccccccc----HHHHHHHHHhcCcEEEEeccccc---Ccc-ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850 148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAV---GKI-DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI 218 (397)
Q Consensus 148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~---~~~-~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~ 218 (397)
++|.+.+ +++|.++|++||++||+|++|+. |.. ..+.....+|++++ +| +.++.++|+++++++..+.+
T Consensus 212 ~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~~~~~~l 289 (429)
T 4e77_A 212 NMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGAFGGRREVMNAL 289 (429)
T ss_dssp TTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEEEEECHHHHTTB
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeee--cccccCCCCeEEEEECHHHHHHh
Confidence 7788888 89999999999999999999982 211 11222234677654 59 54444589999987665555
Q ss_pred ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN 295 (397)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~ 295 (397)
.+... .......+.+...+++..++++.+.+ +++.+++.++.+++++.|.+. .+....... .+.++.
T Consensus 290 ~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~ 359 (429)
T 4e77_A 290 APTGP----VYQAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLRHAAKEENIPLVVNH----VGGMFG 359 (429)
T ss_dssp TTTSS----BCC--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEE
T ss_pred ccCCC----ccccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE----eeeEEE
Confidence 43210 00111223555666666678886643 345556666666666666541 222111111 145666
Q ss_pred EEecCCCh---------------HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850 296 ISFNFIEG---------------ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (397)
Q Consensus 296 ~~~~~~~~---------------~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 358 (397)
+.++..+. .++.+.|. ||.+.++. ...+|+ +..+++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~~--~~~~t~e~ 414 (429)
T 4e77_A 360 LFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA-----------------------FEAGFM--SLAHSNED 414 (429)
T ss_dssp EECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST-----------------------TSCEEC--CTTCCHHH
T ss_pred EEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC-----------------------CCCEEE--eccCCHHH
Confidence 77654311 45665554 78777652 133454 45579999
Q ss_pred HHHHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKVKK 372 (397)
Q Consensus 359 i~~~~~~l~~~~~~ 372 (397)
+++++++|++++++
T Consensus 415 i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 415 IQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 225
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.91 E-value=2e-22 Score=198.71 Aligned_cols=297 Identities=12% Similarity=0.051 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (397)
Q Consensus 42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~ 121 (397)
.+.++++.+++++|++. .+++++|++.|+..++.+++ ++||+|+++.++|.|+..++... |.+++.++.+.+
T Consensus 196 ~i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l~ls---Ga~pv~v~~~~~ 267 (715)
T 3n75_A 196 PHKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLMMMS---DVTPIYFRPTRN 267 (715)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHS---CCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEecccc
Confidence 57889999999999972 46666777899999999988 89999999999999999987766 999999987532
Q ss_pred -C----CC-----CHHHHHHHhcCC--ce---EEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc--cc--
Q psy8850 122 -G----LI-----TLSQLEEKICSD--TI---LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI--DI-- 182 (397)
Q Consensus 122 -~----~~-----d~~~l~~~i~~~--~~---~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~--~~-- 182 (397)
. .+ |+++++++++++ ++ +++++++ |++|.+.|+++|+++|++++ +++|++|+.+.. +.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 2 24 899999999742 34 8899988 99999999999999998774 799999985531 11
Q ss_pred ccCcc--c--ccEE---Eecccc-ccCCCCceEEEEecCCCCc-cccccccCCccccccCCCCchhHHHHHHHHHHHHHH
Q psy8850 183 NIQNY--K--VDLM---SFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253 (397)
Q Consensus 183 ~~~~~--~--~d~~---~~s~~K-~~g~~g~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~ 253 (397)
+.... + +|++ +.|+|| +.|+.+.|+++++++.... +.... ..+.+++++...++++.++++++..
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~------~~~~STSpsy~~~AsldaA~~~~~~ 418 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY------MMHTTTSPHYGIVASTETAAAMMKG 418 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH------HHTSCSSCCHHHHHHHHHHHHHHSH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH------HhhcCCCchHHHHHHHHHHHHHHHh
Confidence 11111 2 5765 999999 6777678999998752211 11111 1234567889999999999988863
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcCc------EEEeCCCCCC--------------------------CCceEEEEecC
Q psy8850 254 -EMKEELKRILFLQKRLYNGLMESIEE------IYINGDMNNR--------------------------IPHNLNISFNF 300 (397)
Q Consensus 254 -~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~--------------------------~~~~~~~~~~~ 300 (397)
...++.+++.++.+++++.|.+ +++ +.++.++... .+.-+.+..++
T Consensus 419 ~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~ 497 (715)
T 3n75_A 419 NAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG 497 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSC
T ss_pred hccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCC
Confidence 4566889999999999999988 653 4555432110 01112222221
Q ss_pred -----------CChHHHHHHhCCcEecccCccCCCCCChhhHHHhhCCCccc-cCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850 301 -----------IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (397)
Q Consensus 301 -----------~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (397)
+++..+. ..|+..|+.... ....|-+-++...+++++++++++|.+
T Consensus 498 ~~~~G~~~~~Gi~g~~~~----------------------~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~ 555 (715)
T 3n75_A 498 MEKDGTMSDFGIPASIVA----------------------KYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTD 555 (715)
T ss_dssp BCTTSCBCSSCCCHHHHH----------------------HHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCcHHHHH----------------------HHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1112222 234555655444 245677777777899999999999999
Q ss_pred HHHHHHhcCc
Q psy8850 369 KVKKLRELSP 378 (397)
Q Consensus 369 ~~~~~~~~~~ 378 (397)
+-+.+.+..|
T Consensus 556 ~~~~~~~~~~ 565 (715)
T 3n75_A 556 FKRAFDLNLR 565 (715)
T ss_dssp HHHHHHTTCB
T ss_pred HHHHhhcccc
Confidence 8776655433
No 226
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.91 E-value=2.9e-22 Score=183.01 Aligned_cols=334 Identities=14% Similarity=0.202 Sum_probs=222.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHH
Q psy8850 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPRE---IIWTSGATESNNLAIKG 77 (397)
Q Consensus 4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~ 77 (397)
+|...+++.|++++-..+...| ++|.. .|..|-...+.++ -+.+..+++||++... =+-..||+.|+..+..+
T Consensus 61 ASEN~~S~aV~~a~gS~ltnKYaEGyPg~-RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~A 139 (490)
T 3ou5_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHhcCcccccccCCCCCc-cccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHH
Confidence 4566789999999999988755 57776 4444545454444 4788999999998652 13345888999999999
Q ss_pred hHhhhccCCCEEEEcCCCChhhHHHHHH-----HhhCC--cEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCc
Q psy8850 78 AAHFYKKRGKHIITVQTEHKSVLDSIRK-----LENDG--FRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNE 148 (397)
Q Consensus 78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~-----~~~~g--~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~ 148 (397)
++ +|||+|+..+..|.++...-.. ..-.| ++...++++ +++.||.|++++...+ +|++|++-...+|
T Consensus 140 ll----~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~ 215 (490)
T 3ou5_A 140 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA 215 (490)
T ss_dssp HC----C-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred Hc----CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc
Confidence 99 8999999999888777554311 10012 244445555 5789999999998765 8999988765555
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEecCC--------
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP-------- 214 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~-------- 214 (397)
...|++++.++|++.|+++++|.+|-.|. .+-.+. .+|+++.|.|| +.||.| |+++++++.
T Consensus 216 --r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~ 290 (490)
T 3ou5_A 216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp --SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEECSEEEECC--C
T ss_pred --cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEecccccccccccc
Confidence 66789999999999999999999997433 332232 58999999999 999986 999988642
Q ss_pred -------CCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850 215 -------RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 286 (397)
Q Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 286 (397)
.+++....+.+ ..|.|-.+.+++...++.+. ...+..+.+++..+++.|.+.|.+ .|+.++..
T Consensus 291 ~~~~~~~~kkin~aVFPg------~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~--~G~~vvsG- 361 (490)
T 3ou5_A 291 REIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSG- 361 (490)
T ss_dssp CEEECCCHHHHHHHHTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG-
T ss_pred chhHHHHHHHHHhhcCcc------ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--CCCeeecC-
Confidence 11222222222 13567778888888888764 446899999999999999999999 89998863
Q ss_pred CCCCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHH
Q psy8850 287 NNRIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKE 358 (397)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~ 358 (397)
.+..+++.+.+. +.+..+....|. +|.+..-..... ..+...+.|||+.+.. ..++|
T Consensus 362 -gTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D--------------~sp~~~SGiRiGTpa~TtRG~~e~d 426 (490)
T 3ou5_A 362 -GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFREDD 426 (490)
T ss_dssp -SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred -CCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC--------------CCCCCCCeeEECCHHHHhCCCCHHH
Confidence 334677777765 456666666665 666543211110 1122247899986432 56899
Q ss_pred HHHHHHHHHHHHH
Q psy8850 359 IDFTIKLLKMKVK 371 (397)
Q Consensus 359 i~~~~~~l~~~~~ 371 (397)
++++.+.|.+++.
T Consensus 427 m~~IA~~I~~~l~ 439 (490)
T 3ou5_A 427 FRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 227
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.90 E-value=7.4e-23 Score=194.11 Aligned_cols=307 Identities=15% Similarity=0.097 Sum_probs=197.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
+++++.+++++.+++.... .. .+ ..+...++++.++++++ .++++++++||++|+..+++... .+ .++
T Consensus 67 G~~~p~v~~a~~~~~~~~~---~~-~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar-~~-~~~ 134 (424)
T 2e7u_A 67 GHAHPKVLARVRETLERGL---TF-GA-----PSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLAR-GY-TGR 134 (424)
T ss_dssp CBTCHHHHHHHHHHHHTCS---CC-SS-----CCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHH-HH-HCC
T ss_pred CCCCHHHHHHHHHHHHhCC---CC-CC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH-Hh-hCC
Confidence 3468999999999987511 11 11 23456788999999986 56789999999999999998521 11 234
Q ss_pred CEEEEcCCCChhhHHHHHHHh-----------hCCc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850 87 KHIITVQTEHKSVLDSIRKLE-----------NDGF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN 146 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~-----------~~g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~ 146 (397)
+.|++.++.|+++........ ..|. .+..+|. .|+++|+++++ +++++|++++++
T Consensus 135 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~ 209 (424)
T 2e7u_A 135 PYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIFEPVV 209 (424)
T ss_dssp CEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSB
T ss_pred CEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 778888888877543221110 0122 3445554 38999999987 467788777666
Q ss_pred Cccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCc
Q psy8850 147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR 217 (397)
Q Consensus 147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~ 217 (397)
+++|.+.| +++|.++ ++||++||+|++|+.... ..+.....+|++ |++| +.++..+|+++++++..+.
T Consensus 210 ~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~ 286 (424)
T 2e7u_A 210 GNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEK 286 (424)
T ss_dssp CTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTT
T ss_pred CCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhh
Confidence 66998887 8999999 999999999999982211 011112246766 5669 5443357999998766555
Q ss_pred cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcE-EEeCCCCCCCCc
Q psy8850 218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI----EEI-YINGDMNNRIPH 292 (397)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~-~~~~~~~~~~~~ 292 (397)
+.+... . ........|...+++..++++.+.+ .+++.+++.++++++++.|++ + +.. .+.+. +.
T Consensus 287 ~~~~~~---~-~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~-----g~ 355 (424)
T 2e7u_A 287 VAPLGP---V-YQAGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKE-VLKEKGLPHTVNRV-----GS 355 (424)
T ss_dssp BTTTSS---B-CCCCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHH-HHHHTTCCCEEEEE-----TT
T ss_pred hcccCC---c-ccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEee-----ce
Confidence 543110 0 0011113445556666678877654 256778888888888888876 3 221 12221 45
Q ss_pred eEEEEecCC--------------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850 293 NLNISFNFI--------------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356 (397)
Q Consensus 293 ~~~~~~~~~--------------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 356 (397)
++++.++.. ...++.+.|. ||.+.++. ...+|++ ..+++
T Consensus 356 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~--~~~t~ 410 (424)
T 2e7u_A 356 MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN-----------------------FEAAFLS--VAHRE 410 (424)
T ss_dssp EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS-----------------------SSCEECC--TTCCH
T ss_pred EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC-----------------------CCceEee--ccCCH
Confidence 667777531 1235655554 78877652 0235554 55799
Q ss_pred HHHHHHHHHHHHH
Q psy8850 357 KEIDFTIKLLKMK 369 (397)
Q Consensus 357 ~~i~~~~~~l~~~ 369 (397)
+++++++++|+++
T Consensus 411 ~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 411 EDVEKTLEALRKA 423 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 228
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.90 E-value=7.5e-23 Score=187.72 Aligned_cols=312 Identities=15% Similarity=0.091 Sum_probs=205.8
Q ss_pred HHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc---CCC
Q psy8850 46 ARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNN 121 (397)
Q Consensus 46 ~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~---~~~ 121 (397)
+.++|+.+ |.+.. ..++++|+|.++.+++.+.++....++++|+++..+|.|...++..+ |+++++++. ++.
T Consensus 122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECEEEETTE
T ss_pred HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---CCeEEEEeeeecccc
Confidence 45555555 98754 48999999977777766666321012499999999999999999998 999999977 345
Q ss_pred CCCCHHHHHHHhcCC---ceEEE-EecccCcccccccHHHHHHHHHhcCcEEEEecccccCccc-----cccCccc-ccE
Q psy8850 122 GLITLSQLEEKICSD---TILVS-VMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-----INIQNYK-VDL 191 (397)
Q Consensus 122 ~~~d~~~l~~~i~~~---~~~v~-~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~-----~~~~~~~-~d~ 191 (397)
..+|+++++++|.+. ..+++ .+.+.|..|...|+++|+++|++||++++||+||+..... .....++ +|+
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~ 277 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence 678999999999763 23333 3333343456789999999999999999999999965421 1222335 999
Q ss_pred EEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 192 MSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIV-GMGEAFRLARIEMKEELKRILFLQKR 268 (397)
Q Consensus 192 ~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~al~~~~~~~~~~~~~~~~~~~~ 268 (397)
++.|.|| ++.+.|.++++.+++ ..+.+....+ |+.+....+ .+...+.+..+++.++.++..++.++
T Consensus 278 vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~ 347 (501)
T 3hl2_A 278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSY 347 (501)
T ss_dssp EEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccceeecCceEEEeCCHHHHHHHHHhCC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 888888666666643 2233322222 222233333 44445566678899999999999999
Q ss_pred HHHHHhhhcCc---EEEeCCCCCCCCceEEEEecCCC------hHHHHHHhC-----Cc-EecccCccCCCCCChhhHHH
Q psy8850 269 LYNGLMESIEE---IYINGDMNNRIPHNLNISFNFIE------GESLLMAIK-----DI-AVSSGSACTSASLEPSYVLR 333 (397)
Q Consensus 269 l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-----~i-~~~~g~~~~~~~~~~~~~~~ 333 (397)
|++.|++ +.. -.++..+. .+.-+.+.+.... ..++...|. |- .+.+|..- ....+.++
T Consensus 348 L~~~L~~-la~~~ge~ll~~~~--n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~----~i~g~~f~ 420 (501)
T 3hl2_A 348 LSNQIKK-LSEAYNERLLHTPH--NPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQ----TVSGYTFR 420 (501)
T ss_dssp HHHHHHH-HHHTTTCCBCCCTT--CSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCE----EETTEEES
T ss_pred HHHHHHH-HHHhcChhhcCCCC--CceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCce----EECCeeec
Confidence 9999988 543 23333222 2444555554331 234444443 32 22333200 00012223
Q ss_pred hhCCC-ccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q psy8850 334 ALGCN-DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378 (397)
Q Consensus 334 ~~g~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 378 (397)
.+|-. ..+...++-+....-++.+|||.++++|.+++.++++...
T Consensus 421 ~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~ 466 (501)
T 3hl2_A 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERS 466 (501)
T ss_dssp STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred CcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33332 2334588999999889999999999999999998877443
No 229
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.90 E-value=1.3e-21 Score=182.26 Aligned_cols=317 Identities=15% Similarity=0.079 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEec
Q psy8850 39 AEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117 (397)
Q Consensus 39 ~~~~~~~~~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~ 117 (397)
.....+.+..++.+++|++... .++++|+|.+..+++.+.++....+++.|+++...|.|+..++..+ |+.++.++
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---Gl~p~~v~ 172 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIE 172 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---CCeeEEEE
Confidence 3456677899999999998554 6899999855555544444322233789999999999999999998 99988886
Q ss_pred c---CCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccc-----ccC
Q psy8850 118 P---KNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-----NIQ 185 (397)
Q Consensus 118 ~---~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-----~~~ 185 (397)
. ++.+.+|++.|+++|.+ .+.+|+.+...+.+|.+.|+++|+++|++||+++|||+||+...... ...
T Consensus 173 ~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~ 252 (450)
T 3bc8_A 173 NVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA 252 (450)
T ss_dssp CEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred eeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHh
Confidence 6 45678999999999965 33455555444546789999999999999999999999999543211 111
Q ss_pred cc-cccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHH-HHHHHHHHHHHHHH
Q psy8850 186 NY-KVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA-FRLARIEMKEELKR 261 (397)
Q Consensus 186 ~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-l~~~~~~~~~~~~~ 261 (397)
.. ++|+++.|.|| ++.+.|++++++++. ....+...+.+ ..++.| . +.++.. +.+..+++.+..++
T Consensus 253 ~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g------~~s~Sp---s-L~l~~~l~~~G~~g~~~~i~~ 322 (450)
T 3bc8_A 253 RVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG------RASASP---S-LDVLITLLSLGCSGYRKLLKE 322 (450)
T ss_dssp HHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS------CBCSHH---H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhc------CCcccH---H-HHHHHHHHHHHHHHHHHHHHH
Confidence 11 68999999999 778888888888632 22222221111 111122 1 222233 23345567888888
Q ss_pred HHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEec------CCChHHHHHHhC-----CcEecc-cCccCCCCC
Q psy8850 262 ILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFN------FIEGESLLMAIK-----DIAVSS-GSACTSASL 326 (397)
Q Consensus 262 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~-----~i~~~~-g~~~~~~~~ 326 (397)
..++++++++.|++ ++ +..+...+..... ..+.++ +.+...+.-.+. |..+.+ |..-. .
T Consensus 323 ~~~~a~~l~~~l~~-~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~---~ 396 (450)
T 3bc8_A 323 RKEMFVYLSTQLKK-LAEAHNERLLQTPHNPIS--LAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT---V 396 (450)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTCCBCCCTTCSSE--EEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEE---E
T ss_pred HHHHHHHHHHHHHh-hHHhcCceecCCccCCCc--ceeecccccccccCCCceeEEEecCCCCccceeeecccccc---h
Confidence 88999999999988 77 7766654322111 123222 223445544442 333331 10000 0
Q ss_pred ChhhHHHhhCCCccc-cCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 327 EPSYVLRALGCNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 327 ~~~~~~~~~g~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
. ...++.+|+.... ....|-+.++...+++++++++++|+++.++.++
T Consensus 397 ~-~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 397 S-GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp T-TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 0122344443322 3467888888889999999999999999876654
No 230
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.90 E-value=4.6e-22 Score=190.72 Aligned_cols=321 Identities=15% Similarity=0.124 Sum_probs=200.5
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850 7 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK-- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~-- 83 (397)
+..+|.|++++.+++... ..+.. .+.. ....+....+.+.|+++++...+.++|++||++|++.+++.+..++.
T Consensus 78 Gh~~p~v~~A~~~~~~~~~~~~~~--~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~ 154 (472)
T 1ohv_A 78 GYSHPALVKLVQQPQNVSTFINRP--ALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSK 154 (472)
T ss_dssp CBTCHHHHHHHHCGGGHHHHHCCC--CTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccccccc--cccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhh
Confidence 456899999999876431 11111 1110 11123344455545556655567899999999999999997753210
Q ss_pred --c-----------------CC---CEEEEcCCCChhhHHHHHHHhh------CCcE---EEEeccCCC-C---------
Q psy8850 84 --K-----------------RG---KHIITVQTEHKSVLDSIRKLEN------DGFR---VTYLKPKNN-G--------- 122 (397)
Q Consensus 84 --~-----------------~g---~~vl~~~~~~~s~~~~~~~~~~------~g~~---v~~v~~~~~-~--------- 122 (397)
. +| ++|++.++.|++.......+.. .+.. +..+++... .
T Consensus 155 ~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 234 (472)
T 1ohv_A 155 ERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKEN 234 (472)
T ss_dssp HHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHH
T ss_pred ccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccc
Confidence 0 23 7899888888776655433311 1111 111222210 0
Q ss_pred ----CCCHHHHHHHhcC------CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc--cccC
Q psy8850 123 ----LITLSQLEEKICS------DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--INIQ 185 (397)
Q Consensus 123 ----~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~--~~~~ 185 (397)
..|+++|++++++ ++++|++++++|++|.+.| +++|.++|++||+++|+|++|+ +|... +.+.
T Consensus 235 ~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~ 314 (472)
T 1ohv_A 235 QQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHE 314 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhcc
Confidence 1268899999876 8899999999999998877 8999999999999999999998 34321 2333
Q ss_pred ccc----ccEEEeccccc-cCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8850 186 NYK----VDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260 (397)
Q Consensus 186 ~~~----~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~ 260 (397)
.++ +|++++| |. +| | |+++ +++. ..+.+... +.....+...+++..++++.+.+ ..+.+
T Consensus 315 ~~gv~~~~Di~t~s--K~~l~--G-G~~~-~~~~-~~~~~~~~-------~~T~~~~~~~~aaa~aal~~~~~--~~~~~ 378 (472)
T 1ohv_A 315 HWGLDDPADVMTFS--KKMMT--G-GFFH-KEEF-RPNAPYRI-------FNTWLGDPSKNLLLAEVINIIKR--EDLLS 378 (472)
T ss_dssp GGCCSSCCSEEEEC--GGGSS--E-EEEE-CGGG-SCSSSSSS-------CCSSSSCHHHHHHHHHHHHHHHH--TTHHH
T ss_pred ccCCCCCCCEEEEc--ccccc--C-CccC-chhh-cccccccc-------cCccCccHHHHHHHHHHHHHHHh--CCHHH
Confidence 333 7877655 95 34 2 6665 4432 21111111 11112355566666688887765 35677
Q ss_pred HHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHH
Q psy8850 261 RILFLQKRLYNGLMES---IEE-IYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLR 333 (397)
Q Consensus 261 ~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~ 333 (397)
++.+++++|++.|++. +++ +...... +.++.+.++.. ....+...|. |+.+.++.
T Consensus 379 ~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-------------- 440 (472)
T 1ohv_A 379 NAAHAGKVLLTGLLDLQARYPQFISRVRGR----GTFCSFDTPDESIRNKLISIARNKGVMLGGCG-------------- 440 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCEEEEEE----TTEEEEECSSHHHHHHHHHHHHHTTEECEEET--------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEeecCC----ceEEEEEeCChhHHHHHHHHHHHCCeEEecCC--------------
Confidence 8888888888888761 232 3222211 34555555421 2345666664 77776531
Q ss_pred hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
.+.|||+++..+++++|++++++|+++++++
T Consensus 441 ---------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 441 ---------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2789999999999999999999999988653
No 231
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.89 E-value=7.9e-22 Score=186.13 Aligned_cols=255 Identities=15% Similarity=0.120 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHhCCCCCcE--EEeCChhHHHHHHHHHhHhhhccCCCEEEEcC-CCChhhHHHHH-------HHhhCCc
Q psy8850 42 AIEKARNEVAQLIYADPREI--IWTSGATESNNLAIKGAAHFYKKRGKHIITVQ-TEHKSVLDSIR-------KLENDGF 111 (397)
Q Consensus 42 ~~~~~~~~la~~~~~~~~~i--~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~-------~~~~~g~ 111 (397)
...++++.+++++|.+...+ ++ +||++|+..++.++. ++||+|+++. +.|.++...+. .+...|.
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~-~sGt~Ai~~al~al~----~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~ 140 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQI-ISGTHAISTALFGIL----RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI 140 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTS-CSHHHHHHHHHHTTC----CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred hHHHHHHHHHHHhCCCccccccee-eCHHHHHHHHHHHhC----CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence 47889999999999874322 24 488999999999887 7999999998 89998876653 2333499
Q ss_pred EEEEeccCCCCCCCHHHHHHHhcCCceEEEEec-ccCccc---ccccHHHHHHHHHh--cCcEEEEecccccCccccccC
Q psy8850 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVML-VNNEIG---VIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQ 185 (397)
Q Consensus 112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~-~~~~tG---~~~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~ 185 (397)
+++.++.++++.+|++++++++++++++|++++ ++||+| .+.++++|+++|++ +|+++|+|++|+.+....+..
T Consensus 141 ~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~ 220 (431)
T 3ht4_A 141 GYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC 220 (431)
T ss_dssp EEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred EEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence 999999988899999999999999999999995 555655 55568899999999 999999999999776433344
Q ss_pred cccccEEEecccc-ccC---CCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8850 186 NYKVDLMSFSAHK-IYG---PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 261 (397)
Q Consensus 186 ~~~~d~~~~s~~K-~~g---~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~ 261 (397)
.+++|++++|++| +.| +.| |++++++++.+.+........ .+...+ ++......+...++. .+.+.++
T Consensus 221 ~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~--~g~~~~-~~~~~~~~~~~~l~~----~~~~~~~ 292 (431)
T 3ht4_A 221 HVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG--IGAEAG-ASLYSLQEMYQGFFL----APHVAGQ 292 (431)
T ss_dssp GTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT--TTTSCS-CCCSCSHHHHHHHHH----HHHHHHH
T ss_pred ccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC--cccccC-ccHHHHHHHHhHhhh----HHHHHHH
Confidence 4578999999999 444 555 999998766655543221110 001111 111111112233332 3456677
Q ss_pred HHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEecCC-ChHHHHHHhC
Q psy8850 262 ILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFNFI-EGESLLMAIK 311 (397)
Q Consensus 262 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~ 311 (397)
..+++.++.+.|++ + ++.+...+. .....++.+.+++. ...++.+.|+
T Consensus 293 ~~~~a~~l~~~L~~-~-g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~ 342 (431)
T 3ht4_A 293 ALKGAIFTAAFLEK-L-GMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQ 342 (431)
T ss_dssp HHHHHHHHHHHHHH-H-TCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-C-cCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHH
Confidence 88888999999988 4 444443222 12233666776531 1234555554
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.88 E-value=4.7e-21 Score=180.44 Aligned_cols=316 Identities=15% Similarity=0.134 Sum_probs=200.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g 86 (397)
+..+|+|++++.+++..... .. .+ .....++.+.|++.+.- .+.+.|++|||+|++.+++... .+++ +
T Consensus 102 GH~hp~v~~Av~~q~~~~~~-~~--~~------~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr-~~tg-r 169 (454)
T 4ao9_A 102 GHSAPEIRDAVIEAMQGGIN-LT--GH------NLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAAL-HFTG-R 169 (454)
T ss_dssp CSCCHHHHHHHHHHHHTCSC-CC--SE------ESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHH-HHHT-C
T ss_pred cCCCHHHHHHHHHHHhcCCC-cc--CC------cHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHH-hccc-C
Confidence 45689999999999876221 00 11 12345678888888863 4589999999999999999654 3434 4
Q ss_pred CEEEEcCCCChhhHHHHHHH-hhC--CcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCccccccc----HH
Q psy8850 87 KHIITVQTEHKSVLDSIRKL-END--GFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP----IL 156 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~-~~~--g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~----l~ 156 (397)
++|+....+|++........ ... ......+|.+ |++.+++.+.+ ++.+|+++.+++..|.+.| ++
T Consensus 170 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~ 244 (454)
T 4ao9_A 170 RKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQ 244 (454)
T ss_dssp CEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHH
T ss_pred CeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHH
Confidence 67777777666543211110 000 2344455544 78999988864 5789999999999999887 89
Q ss_pred HHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL 231 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (397)
+|.++|++||+++|+|++++ |... .......+|+++++ | +.|+.++|++.++++..+.+.+.. +......
T Consensus 245 ~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~--~~~~h~~ 319 (454)
T 4ao9_A 245 ALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRT--GPLAHSG 319 (454)
T ss_dssp HHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTT--CSCCCCC
T ss_pred HHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhcc--CCccccC
Confidence 99999999999999999997 3221 11123368999887 9 666556899999987665554321 0111112
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCceEEEEecCC------
Q psy8850 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE-IYINGDMNNRIPHNLNISFNFI------ 301 (397)
Q Consensus 232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~------ 301 (397)
+.+. |...+++..++|+.+.+ ++..+++.++.++|++.|++. .+- ..+.+. +.++.+.|...
T Consensus 320 T~~g-nPla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-----G~m~gi~f~~~~~~~~~ 391 (454)
T 4ao9_A 320 TFNN-NVMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNALCANEGVAMQFTGI-----GSLMNAHFVQGDVRSSE 391 (454)
T ss_dssp TTTT-CHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEE-----TTEEEEESCCSCCCSGG
T ss_pred CCCC-CHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeee-----ceEEEEEEecCCCCCHH
Confidence 2222 34455555577887754 455667777777777777651 121 112221 34555555321
Q ss_pred -----Ch---HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850 302 -----EG---ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371 (397)
Q Consensus 302 -----~~---~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (397)
+. ..+...+. ||.+.+. +.+.+++ .+|++|||+++++|++++.
T Consensus 392 ~~~~~d~~~~~~~~~~ll~~Gv~~~p~-------------------------~~~~~s~--~~T~~dId~~l~al~~~l~ 444 (454)
T 4ao9_A 392 DLAAVDGRLRQLLFFHLLNEDIYSSPR-------------------------GFVVLSL--PLTDADIDRYVAAIGSFIG 444 (454)
T ss_dssp GGTTCCHHHHHHHHHHHHHTTEECCTT-------------------------CEEECCT--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHCCEEEcCC-------------------------CCEEEeC--CCCHHHHHHHHHHHHHHHH
Confidence 11 12222232 6666543 3333443 4799999999999999999
Q ss_pred HHHhcCcc
Q psy8850 372 KLRELSPL 379 (397)
Q Consensus 372 ~~~~~~~~ 379 (397)
++..+.|.
T Consensus 445 ~~~a~lPr 452 (454)
T 4ao9_A 445 GHGALLPR 452 (454)
T ss_dssp HSGGGSCB
T ss_pred hccccCCC
Confidence 99888875
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.87 E-value=4e-19 Score=168.05 Aligned_cols=326 Identities=14% Similarity=0.130 Sum_probs=202.7
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK 84 (397)
Q Consensus 6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~ 84 (397)
.+..+|+|.+++++++.... .... .. ...+...++.+.|+++...+ .+.++|++||++|++.+++.. +.+++
T Consensus 78 lGh~~p~v~~Ai~~q~~~~~-~~~~--~~---~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~ 150 (456)
T 4atq_A 78 VGASDPAVVAAVQEAAAHFT-HTCF--MV---TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVA-RLATG 150 (456)
T ss_dssp TCTTCHHHHHHHHHHHHHCS-CCTT--TT---SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHC
T ss_pred cCCCCHHHHHHHHHHHhhcc-Cccc--Cc---cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHH-hhhhc
Confidence 34678999999999987732 1111 11 11234556778888888653 446999999999999999954 44444
Q ss_pred CCCEEEEcCCCChhhH-HHHHHHhhC----------CcEEEEeccCC-----C-CCCCHHHHHHHh-------c-CCceE
Q psy8850 85 RGKHIITVQTEHKSVL-DSIRKLEND----------GFRVTYLKPKN-----N-GLITLSQLEEKI-------C-SDTIL 139 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~-~~~~~~~~~----------g~~v~~v~~~~-----~-~~~d~~~l~~~i-------~-~~~~~ 139 (397)
+ .+|+....+|++.. .+....... ...+..+|... . ...+.+.+++.+ . +++.+
T Consensus 151 r-~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAA 229 (456)
T 4atq_A 151 R-DAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAA 229 (456)
T ss_dssp C-CEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEE
T ss_pred C-CeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEE
Confidence 4 56666666665544 343332110 12355555431 1 112233333332 2 36789
Q ss_pred EEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEE
Q psy8850 140 VSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALY 209 (397)
Q Consensus 140 v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~ 209 (397)
|+++.++...|.+.| ++++.++|++||+++|+|+++.. |.. ..+.....+|+++++ | +.|...+|.++
T Consensus 230 vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~ 307 (456)
T 4atq_A 230 IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAIT 307 (456)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCCceeeE
Confidence 999999999998876 79999999999999999999873 222 122223468999988 9 76666689999
Q ss_pred EecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc--EEEeC
Q psy8850 210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE--IYING 284 (397)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~--~~~~~ 284 (397)
++++..+.+.+..++ .+.+. |...+++..++|+.+.+ +++.++.+++.+++.+.|++. ++. ..+++
T Consensus 308 ~~~~i~~~~~~~~~~------~Tf~g-npla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~ 378 (456)
T 4atq_A 308 GRADLLDAVHPGGLG------GTYGG-NPVACAAALAAIDTMEQ--HDLNGRARHIEELALGKLRELAAELSAGGGSVVG 378 (456)
T ss_dssp EEHHHHTTSCTTSSC------CSSSS-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCC-----CEE
T ss_pred ecHHHHhcccccCCC------CCCCC-ChHHHHhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhcccccCCceE
Confidence 998766665544332 23333 44555555588888765 345566666666666666551 211 11111
Q ss_pred CCCCCCCceEEEEecCCC--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850 285 DMNNRIPHNLNISFNFIE--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 354 (397)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 354 (397)
+- ...+.++-+.+.... ...+...+. |+.+.+.. ..++.|||.++..+
T Consensus 379 ~V-RG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g---------------------~~~~~irl~PpL~i 436 (456)
T 4atq_A 379 DI-RGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG---------------------TYGNVIRLLPPLVI 436 (456)
T ss_dssp EE-EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC---------------------TTSCEEEECCCTTC
T ss_pred Ee-eecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC---------------------CCCCEEEEECCCCC
Confidence 10 011445556663211 123444443 66654321 01378999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy8850 355 TEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 355 ~~~~i~~~~~~l~~~~~~ 372 (397)
|++++|+++++|.++++.
T Consensus 437 t~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 437 SDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999874
No 234
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.76 E-value=3.7e-23 Score=196.13 Aligned_cols=316 Identities=14% Similarity=0.073 Sum_probs=200.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (397)
Q Consensus 8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~ 87 (397)
..+|.|++++.+++.... .+ . ...+...++.+.|+++++ ..+.+++++||++|++.+++.+.. + .+++
T Consensus 116 h~~p~V~~Av~~q~~~~~------~~--~-~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~-~-tgr~ 183 (465)
T 2yky_A 116 HSHPVIRAAVERALAVGL------NL--S-TQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATA-I-TGRK 183 (465)
Confidence 457899999998886511 11 1 234567788999999985 446899999999999999986532 2 2457
Q ss_pred EEEEcCCCChhhHHHHHHHh--hCCc--EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCccccccc----HH
Q psy8850 88 HIITVQTEHKSVLDSIRKLE--NDGF--RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP----IL 156 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~--~~g~--~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~----l~ 156 (397)
+|++.++.|++...... .+ ..|+ .+..+|. .|+++|+++++ +++++|+++.+++++|.+.| ++
T Consensus 184 ~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~ 257 (465)
T 2yky_A 184 TVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLD 257 (465)
Confidence 88888888876554322 11 1133 3333343 27899999998 67899999888888998877 89
Q ss_pred HHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccc
Q psy8850 157 EIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL 231 (397)
Q Consensus 157 ~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (397)
+|.++|++||+++|+|++|+ +... .+.....+|++ +++| +.++..+|+++++++..+.+.+...+. .....
T Consensus 258 ~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~-~~~~~ 333 (465)
T 2yky_A 258 LLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGA-FAHAG 333 (465)
Confidence 99999999999999999999 5321 11112246765 5569 444334799999988777665410010 00111
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--C--------
Q psy8850 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I-------- 301 (397)
Q Consensus 232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 301 (397)
.. ..|...+++..++++.+.+ +.+.+++.++.+++++.|++......+... ....+.++.+.|.+ .
T Consensus 334 T~-~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~g~G~~~~i~~~~~~~~~~~~~~~ 409 (465)
T 2yky_A 334 TF-NNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQ-FTGLGSLGTIHFSRAPIRSAGDVRA 409 (465)
Confidence 12 2334445555577887755 457788888888888888772222222111 11224455565543 0
Q ss_pred -C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 302 -E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 302 -~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
+ ...+...+. ||.+.++.. .. ++..++++|||+++++|.++++++++
T Consensus 410 ~d~~~~~~~~~~ll~~GV~v~p~~~-----------------------~~----~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 410 ADQQLKELFFFHMLRKGIYLAPRGM-----------------------YA----LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 0 123333333 555554310 11 33457999999999999999988765
Q ss_pred c
Q psy8850 376 L 376 (397)
Q Consensus 376 ~ 376 (397)
.
T Consensus 463 ~ 463 (465)
T 2yky_A 463 L 463 (465)
Confidence 4
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.84 E-value=7.7e-20 Score=173.59 Aligned_cols=330 Identities=15% Similarity=0.087 Sum_probs=204.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (397)
Q Consensus 7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--- 83 (397)
+..+|++.+++.+++.+..... . .+ + ...+...++.+.|+++.+.+.+.++|++||++|++.+++.....+.
T Consensus 82 Gh~~p~v~~Ai~~q~~~l~~~~-~-~~--~-~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g 156 (473)
T 4e3q_A 82 GFDHKGLIDAAKAQYERFPGYH-A-FF--G-RMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEG 156 (473)
T ss_dssp CSCCHHHHHHHHHHHHHCCCCC-C-CT--T-EEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHhccccc-c-cc--c-ccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 4568999999999998732111 1 11 1 1123455688889999877667899999999999999996543221
Q ss_pred -cCCCEEEEcCCCChhh-HHHHHHHhhC-----C---cEEEEeccC------CCCCC-------CHHHHHHHhc----CC
Q psy8850 84 -KRGKHIITVQTEHKSV-LDSIRKLEND-----G---FRVTYLKPK------NNGLI-------TLSQLEEKIC----SD 136 (397)
Q Consensus 84 -~~g~~vl~~~~~~~s~-~~~~~~~~~~-----g---~~v~~v~~~------~~~~~-------d~~~l~~~i~----~~ 136 (397)
..+.+|+....+|++. ..++...... + .....++.. ..+.. ..+++++.+. ++
T Consensus 157 ~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 236 (473)
T 4e3q_A 157 KPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADT 236 (473)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCc
Confidence 2235677666666554 4333322110 0 123333322 11111 1234555543 35
Q ss_pred ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCC-CCc
Q psy8850 137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGP-KGI 205 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~ 205 (397)
+.+|+++.++...|.+.| ++++.++|++||+++|+|+++.. |.. ..+.....+|+++++ | +.|+ ..+
T Consensus 237 iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl 314 (473)
T 4e3q_A 237 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPM 314 (473)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCC
T ss_pred eEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCc
Confidence 789999999999998876 79999999999999999999873 222 112223468999988 9 6554 568
Q ss_pred eEEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEE
Q psy8850 206 GALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIY 281 (397)
Q Consensus 206 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~ 281 (397)
|+++++++..+.+...... .....+.+.+.. ...+++..++|+.+.+ +.+.++.+++.++|++.|++ + +.+.
T Consensus 315 ~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gn-pla~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~v~ 390 (473)
T 4e3q_A 315 GAVILGPELSKRLETAIEAIEEFPHGFTASGH-PVGCAIALKAIDVVMN--EGLAENVRRLAPRFEERLKH-IAERPNIG 390 (473)
T ss_dssp EEEEECHHHHHHHHHHHHHHSCCCCCCTTTTC-HHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHHHHHH-HTTSTTEE
T ss_pred ccccccHHHHHHhccccccccccccCCCCCCC-cchhhhhhhhhhhhcc--ccHHHHHHHHHHHHHHHHHH-HhcCCCee
Confidence 9999998765554322110 111122333333 3444555578887765 45566777777778777766 4 3332
Q ss_pred EeCCCCCCCCceEEEEecCC-------C-----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850 282 INGDMNNRIPHNLNISFNFI-------E-----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (397)
-+. ..+.++-+.+... + ...+...+. |+.+.+. ++.+|
T Consensus 391 ~vR----G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------------------g~~i~ 442 (473)
T 4e3q_A 391 EYR----GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL------------------------GQSVV 442 (473)
T ss_dssp EEE----EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE------------------------TTEEE
T ss_pred EEe----ecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec------------------------CCEEE
Confidence 111 1134445554211 0 133444443 6665532 37899
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 348 FTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
|+++..+|++++|+++++|.++++++.+
T Consensus 443 l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 443 LCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987643
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.77 E-value=6.3e-18 Score=170.89 Aligned_cols=327 Identities=10% Similarity=0.052 Sum_probs=193.6
Q ss_pred CCC-CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhh-c
Q psy8850 7 TPI-DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFY-K 83 (397)
Q Consensus 7 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~-~ 83 (397)
+.. +|++.+++++++.+.. .... .+. ..+...++.+.|+++.+.+ .+.++|++||++|++.+++...+.+ .
T Consensus 395 Gh~~~p~i~~Ai~~Q~~~l~-h~~~----~~~-~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~ 468 (831)
T 4a0g_A 395 DPTFQAELAREMGYTAARFG-HVMF----PEN-VYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCV 468 (831)
T ss_dssp CHHHHHHHHHHHHHHHHHHS-SCCC----TTE-ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcc-cccc----ccc-CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHh
Confidence 344 7899999999987732 1111 011 1234457888899988744 4579999999999999999764323 1
Q ss_pred c------------CCCEEEEcCCCCh-hhHHHHHHHhhC------------CcEE-------------EEeccCCCC---
Q psy8850 84 K------------RGKHIITVQTEHK-SVLDSIRKLEND------------GFRV-------------TYLKPKNNG--- 122 (397)
Q Consensus 84 ~------------~g~~vl~~~~~~~-s~~~~~~~~~~~------------g~~v-------------~~v~~~~~~--- 122 (397)
. .+.+||.....|+ .+..++...... +..+ ..+++....
T Consensus 469 ~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~ 548 (831)
T 4a0g_A 469 DHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEI 548 (831)
T ss_dssp TTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCC
T ss_pred hcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccc
Confidence 1 1345666666555 555444432110 1111 112222100
Q ss_pred ------CCC------------------HHHHHHHhc--------CCceEEEEecc-cCccccccc----HHHHHHHHHhc
Q psy8850 123 ------LIT------------------LSQLEEKIC--------SDTILVSVMLV-NNEIGVIQP----ILEIGELCRSK 165 (397)
Q Consensus 123 ------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~~~tG~~~~----l~~i~~l~~~~ 165 (397)
.-+ .++|++.+. +++.+|+++.+ ++..|.+.+ +++|.++|++|
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~ 628 (831)
T 4a0g_A 549 APEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR 628 (831)
T ss_dssp CSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT
T ss_pred ccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc
Confidence 001 256777774 35789999986 899898776 89999999999
Q ss_pred CcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850 166 GVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (397)
Q Consensus 166 gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
|+++|+|+++. +|... .......+|++++| | +.|+ ..+|+++++++..+.+.+..........+..+. +.
T Consensus 629 gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g-~P 705 (831)
T 4a0g_A 629 KIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSA-HA 705 (831)
T ss_dssp TCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTT-CH
T ss_pred CCeEEEEcCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHHHhcccccccceeecCCcc-cH
Confidence 99999999887 32221 11122357888766 9 6553 357999999775444432110001112233333 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---------
Q psy8850 239 HQIVGMGEAFRLARIEMKEELKRIL----FL----QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--------- 301 (397)
Q Consensus 239 ~~~~~l~~al~~~~~~~~~~~~~~~----~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 301 (397)
..+++..++|+.+.+. .+.++.. .+ .+.+.+.+.+ .+.+..+... +.++.+.+...
T Consensus 706 la~Aaala~L~~i~~~--~l~~~~~~~~~~l~~~l~~~l~~~l~~-~~~v~~vrg~----Gl~~~iel~~~~~~~~~~~~ 778 (831)
T 4a0g_A 706 MGCATAAKAIQWFKDP--ETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVVVI----GTLFALELKADASNSGYASL 778 (831)
T ss_dssp HHHHHHHHHHHHHHCT--TTCTTBCTTSSBBCCCSCHHHHHHHHH-STTEEEEEEE----TTEEEEEEC---------CH
T ss_pred HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCceeEeec----ccEEEEEEecCccccccchH
Confidence 5555555788877541 1222221 11 2234455655 5665444321 34555555321
Q ss_pred ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850 302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373 (397)
Q Consensus 302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (397)
....+...+. |+.+.+. ++.|||+++..+++++|++++++|.++++++
T Consensus 779 ~a~~~~~~l~e~Gv~v~p~------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 779 YAKSLLIMLREDGIFTRPL------------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHHHTTEECCCB------------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1234555554 7777643 2889999998899999999999999887654
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=72.12 E-value=5.9 Score=32.10 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=33.8
Q ss_pred HHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 129 LEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 129 l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
|.++..-.+..|+.+-..|+.|.....+++.++|++||+.++.
T Consensus 152 LarLAGl~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 152 LSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp HHHHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred HHHHcCCCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 3333344688888776658899999999999999999998763
No 238
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=68.54 E-value=39 Score=27.35 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=44.0
Q ss_pred HHhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcC----cEEEEecc
Q psy8850 105 KLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKG----VIFHCDAA 174 (397)
Q Consensus 105 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g----i~livD~a 174 (397)
.+...|.++..+..+ +..+++.+++. .++.+|.++...+ .....++++++.+++.+ ++|++=+.
T Consensus 111 ~l~~~G~~v~~LG~~----vp~~~l~~~~~~~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 111 MLESGGFTVYNLGVD----IEPGKFVEAVKKYQPDIVGMSALLT--TTMMNMKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHTTCEEEECCSS----BCHHHHHHHHHHHCCSEEEEECCSG--GGTHHHHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEECC
Confidence 345569999988764 56788877765 4888998886543 33445777877777764 77776544
No 239
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=68.52 E-value=4.9 Score=32.37 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=39.2
Q ss_pred CHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc--EEEEecccccCc
Q psy8850 125 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV--IFHCDAAQAVGK 179 (397)
Q Consensus 125 d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi--~livD~a~~~~~ 179 (397)
+.++|++++......+++- +|.+..++++++.++++|- .|+.|-..+.+.
T Consensus 18 ~~~~l~~al~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~ 69 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVML-----ETHVAQLKALVKYAQAGGKKVLLHADLVNGLKN 69 (192)
T ss_dssp SSHHHHHHTTSSCCEEEEC-----SEETTTHHHHHHHHHHTTCEEEEEGGGEETCCC
T ss_pred CHHHHHHHHcCCCCEEEEe-----cCcHHHHHHHHHHHHHcCCeEEEecCchhccCC
Confidence 6789999998887887774 4778899999999999974 456666666444
No 240
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=60.76 E-value=22 Score=30.59 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=47.2
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEec-cCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLK-PKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGEL 161 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~-~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l 161 (397)
..+++ .|+++....+.+ |++...+. +..+..+.+.+|.+.++ .+.++|+++...++ -..+.|+++
T Consensus 164 ~~~vt---~H~af~Y~~~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~l~~~ 233 (282)
T 3mfq_A 164 RYLVT---PHDAFNYFAASY---DFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTNP----ERMKKLQEA 233 (282)
T ss_dssp CEEEC---SSSCCHHHHHHT---TCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSCT----HHHHHHHHH
T ss_pred cEEEE---ECchHHHHHHHC---CCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----HHHHHHHHH
Confidence 44554 455666666767 98877543 23344566777776653 37788877654322 225778888
Q ss_pred HHhcCcEEEE
Q psy8850 162 CRSKGVIFHC 171 (397)
Q Consensus 162 ~~~~gi~liv 171 (397)
|++.|+.+.+
T Consensus 234 a~~~g~~v~~ 243 (282)
T 3mfq_A 234 VKAKGGQVEV 243 (282)
T ss_dssp HHTTSCCCEE
T ss_pred HHhcCCceEE
Confidence 9999986654
No 241
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=59.44 E-value=48 Score=26.27 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.0
Q ss_pred HHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 130 EEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 130 ~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
...++++..+|+++. .|....+-++++.+|++|+.+|.
T Consensus 104 ~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI~ 141 (196)
T 2yva_A 104 RALGHAGDVLLAIST----RGNSRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_dssp HHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HhcCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEEE
Confidence 344566666666664 47767778888999999987654
No 242
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=59.20 E-value=20 Score=31.95 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcE-EEeCC--------hhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhH
Q psy8850 40 EKAIEKARNEVAQLIYADPREI-IWTSG--------ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVL 100 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i-~~~~g--------~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~ 100 (397)
......+++.|.+.+|+++++| +++.. ....+..++..|... .+++|.+++---.|+...
T Consensus 74 vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~-a~pgD~llfYFSGHG~q~ 142 (350)
T 4f6o_A 74 INDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKD-AQPNDSLFLHYSGHGGQT 142 (350)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTT-CCTTCEEEEEEESCEEEC
T ss_pred HHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHh-CCCCCEEEEEEcCCceec
Confidence 3455667888888889987775 45543 234466666655532 257899987666666544
No 243
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=58.29 E-value=20 Score=29.05 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=30.6
Q ss_pred cCCceEEEEecc-cCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 134 CSDTILVSVMLV-NNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 134 ~~~~~~v~~~~~-~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.-.+..|+.+-. .|..|......++.++|++||++++.
T Consensus 156 Gl~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 156 GLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp TSCSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 346777766652 67889999999999999999998863
No 244
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=58.24 E-value=77 Score=26.64 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=43.5
Q ss_pred HhCCCCCcEEEeCChhHHHHH-HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHH
Q psy8850 53 LIYADPREIIWTSGATESNNL-AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE 131 (397)
Q Consensus 53 ~~~~~~~~i~~~~g~t~a~~~-~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 131 (397)
+|.+. +.+.+..|++.++=. +...|. +.|-.|++.+-.-.......+.+...|.++..+.+|-. |.+++++
T Consensus 4 ~f~L~-gKvalVTGas~GIG~aia~~la----~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~---~~~~v~~ 75 (255)
T 4g81_D 4 LFDLT-GKTALVTGSARGLGFAYAEGLA----AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVT---DELAIEA 75 (255)
T ss_dssp TTCCT-TCEEEETTCSSHHHHHHHHHHH----HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT---CHHHHHH
T ss_pred CcCCC-CCEEEEeCCCcHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC---CHHHHHH
Confidence 34444 346666666666543 344455 67888888766545555555556566778888877632 4555555
Q ss_pred Hh
Q psy8850 132 KI 133 (397)
Q Consensus 132 ~i 133 (397)
++
T Consensus 76 ~~ 77 (255)
T 4g81_D 76 AF 77 (255)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 245
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=57.49 E-value=70 Score=25.36 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 127 SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 127 ~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+.+...++++..+|.++. .|....+-++++.||++|+.+|.
T Consensus 105 ~~~~~~~~~~DvvI~iS~----SG~t~~~i~~~~~ak~~g~~vI~ 145 (199)
T 1x92_A 105 KQIRALGQPGDVLLAIST----SGNSANVIQAIQAAHDREMLVVA 145 (199)
T ss_dssp HHHHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhCCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEEE
Confidence 344455666666666664 47666777888999999987654
No 246
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=56.96 E-value=16 Score=30.16 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=31.0
Q ss_pred HHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 131 EKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 131 ~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
++..-.+..|+.+ ..|..|.....+++.++|++||+.++.
T Consensus 173 rlAGl~Pa~VicE-i~~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 173 ELANLVPITTICE-MMGDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp HHTTSCSEEEEEE-EBCTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred HHcCCCceEEEEE-EeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 3334467777666 457789999999999999999998764
No 247
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=54.94 E-value=99 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=32.3
Q ss_pred CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccC-cccccccHHHHHHHHHhcC-cEEEE
Q psy8850 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNN-EIGVIQPILEIGELCRSKG-VIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~-~tG~~~~l~~i~~l~~~~g-i~liv 171 (397)
.+.++...++. |.+.+++++.. ...|+...... +...+.....+.+.|++.| +.-++
T Consensus 55 ~~~~~~~~D~~-----d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 55 LGAKLIEASLD-----DHQRLVDALKQ-VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp TTCEEECCCSS-----CHHHHHHHHTT-CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred CCeEEEeCCCC-----CHHHHHHHHhC-CCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 36665544443 67888888865 44444333222 1112334577888899887 64333
No 248
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=54.36 E-value=28 Score=28.96 Aligned_cols=90 Identities=10% Similarity=-0.039 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhHhhhccCCCEEEEcCCCChhh--HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecc
Q psy8850 68 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSV--LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLV 145 (397)
Q Consensus 68 t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~--~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 145 (397)
|+++..+.+.. ..|.+|++..+.-..- ....... |.++..+++.. .+++.+.+ .+..+|++.-.
T Consensus 34 T~lL~~~~r~~-----~~g~kvli~kp~~D~Ryg~~i~sr~---G~~~~a~~i~~-----~~di~~~~-~~~dvViIDEa 99 (234)
T 2orv_A 34 TELMRRVRRFQ-----IAQYKCLVIKYAKDTRYSSSFCTHD---RNTMEALPACL-----LRDVAQEA-LGVAVIGIDEG 99 (234)
T ss_dssp HHHHHHHHHHH-----TTTCCEEEEEETTCCCC--------------CEEEEESS-----GGGGHHHH-TTCSEEEESSG
T ss_pred HHHHHHHHHHH-----HCCCeEEEEeecCCccchHHHHhhc---CCeeEEEecCC-----HHHHHHHh-ccCCEEEEEch
Confidence 35555555543 4555665544332211 2233333 76666666542 23333333 45789999999
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
+.-++ +.++.++..+.|+.||+=+-.
T Consensus 100 QF~~~----v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 100 QFFPD----IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp GGCTT----HHHHHHHHHHTTCEEEEECCS
T ss_pred hhhhh----HHHHHHHHHhCCCEEEEEecc
Confidence 87764 778888888899999986554
No 249
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=53.32 E-value=60 Score=25.03 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=37.1
Q ss_pred HhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850 106 LENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (397)
Q Consensus 106 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g 166 (397)
+...|+++.....+ ..++++.+++. .++.+|.++...+ .....++++++.+++.|
T Consensus 42 l~~~G~eVi~lG~~----~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 42 LRDAGFEVVYTGLR----QTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHTTCEEECCCSB----CCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHHHHHHHTT
T ss_pred HHHCCCEEEECCCC----CCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHHHHHHhcC
Confidence 44559999877654 46777776654 5788888876542 34445677777777753
No 250
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=52.97 E-value=27 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=29.3
Q ss_pred CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 135 SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 135 ~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
-.|.+|+.+ ..+..|......++.++|++||++++-
T Consensus 166 l~Pa~vicE-i~~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCE-LTNDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEE-BBCTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEE-EeCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 367777666 447789999999999999999998763
No 251
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=52.55 E-value=1e+02 Score=25.84 Aligned_cols=61 Identities=15% Similarity=0.340 Sum_probs=39.8
Q ss_pred HHhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcC--cEEEE
Q psy8850 105 KLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHC 171 (397)
Q Consensus 105 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g--i~liv 171 (397)
.+...|++++.+..+ +.++++.+++. .++.+|.++...+ .....++++++..++.+ ++|++
T Consensus 146 ~L~~~G~~Vi~LG~~----vp~e~l~~~~~~~~~d~V~lS~l~~--~~~~~~~~~i~~l~~~~~~~~v~v 209 (258)
T 2i2x_B 146 LLRANGYNVVDLGRD----VPAEEVLAAVQKEKPIMLTGTALMT--TTMYAFKEVNDMLLENGIKIPFAC 209 (258)
T ss_dssp HHHHTTCEEEEEEEE----CCSHHHHHHHHHHCCSEEEEECCCT--TTTTHHHHHHHHHHTTTCCCCEEE
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEEeecc--CCHHHHHHHHHHHHhcCCCCcEEE
Confidence 345569999888765 35677765554 5888998886543 33445777777777764 44444
No 252
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=50.83 E-value=8.8 Score=35.89 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=28.0
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
+.+.-|+..+++++++-||++||.||+|.+..
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 45567999999999999999999999998853
No 253
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=50.68 E-value=27 Score=20.57 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=24.9
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 344 SSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
..+|||++. -+..+-+++...|.+++.++.
T Consensus 2 ervrisita-rtkkeaekfaailikvfaelg 31 (62)
T 2gjh_A 2 ERVRISITA-RTKKEAEKFAAILIKVFAELG 31 (62)
T ss_dssp CEEEEEEEC-SSHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEe-cchhHHHHHHHHHHHHHHHhC
Confidence 357999987 578999999999999888763
No 254
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=49.69 E-value=1e+02 Score=25.02 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=41.9
Q ss_pred HHhhCCcEEEEeccCCCCCCCHHHHHHH-hcCCceEEEE--ecccCcccccccHHHHHHHHHhcC----cEEEEec
Q psy8850 105 KLENDGFRVTYLKPKNNGLITLSQLEEK-ICSDTILVSV--MLVNNEIGVIQPILEIGELCRSKG----VIFHCDA 173 (397)
Q Consensus 105 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~-i~~~~~~v~~--~~~~~~tG~~~~l~~i~~l~~~~g----i~livD~ 173 (397)
.+...|++++.+..+ +.++++.++ ...++.+|.+ +... +.....++++++.+++.| +++++=+
T Consensus 115 ~l~~~G~~Vi~LG~~----vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 115 MLGANGFQIVDLGVD----VLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHTSCEEEECCSS----CCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HHHHCCCeEEEcCCC----CCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 345569999988765 567887554 4568888888 6543 334445777877777764 5666543
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=49.18 E-value=95 Score=28.60 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=27.2
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850 344 SSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELS 377 (397)
Q Consensus 344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 377 (397)
..-||+-+.-++.+||.+++.-.++.-+-.++..
T Consensus 397 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 430 (443)
T 3dm5_A 397 RIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMN 430 (443)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3458887777899999999999988877777754
No 256
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=48.87 E-value=91 Score=27.07 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=46.7
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEe-ccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYL-KPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v-~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
+..+++. |+++....+.+ |++...+ ++..+..+.+.+|.++++ .+.++|+++...++ +.+..
T Consensus 190 ~~~~v~~---H~af~Yfa~~y---Gl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~-------k~~~~ 256 (307)
T 3ujp_A 190 QRFLVSC---EGAFSYLARDY---GMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQKQ 256 (307)
T ss_dssp GCEEEEE---ESTTHHHHHHT---TCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHHH
T ss_pred CCEEEEE---CchHHHHHHHC---CCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh-------HHHHH
Confidence 4556664 44666666667 9987755 445555667777776653 47888888765443 45666
Q ss_pred HHHhcCcEE
Q psy8850 161 LCRSKGVIF 169 (397)
Q Consensus 161 l~~~~gi~l 169 (397)
++++.|+.+
T Consensus 257 ia~e~g~~v 265 (307)
T 3ujp_A 257 VAQATGARF 265 (307)
T ss_dssp TTTTTCCEE
T ss_pred HHHHhCCce
Confidence 788888876
No 257
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=48.65 E-value=1.4e+02 Score=26.03 Aligned_cols=99 Identities=10% Similarity=0.101 Sum_probs=53.4
Q ss_pred cEEEeCC-hhHHHHHHHHHhHhhhccCCC-EEEEcCCC--ChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC
Q psy8850 60 EIIWTSG-ATESNNLAIKGAAHFYKKRGK-HIITVQTE--HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS 135 (397)
Q Consensus 60 ~i~~~~g-~t~a~~~~l~~l~~~~~~~g~-~vl~~~~~--~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 135 (397)
.|++|.+ |.-+-.+ +..|. +.|. .+++.... .+.-......+...++++...++. |.+.+++++.+
T Consensus 12 ~IlVtGatG~iG~~l-~~~L~----~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~-----d~~~l~~~~~~ 81 (346)
T 3i6i_A 12 RVLIAGATGFIGQFV-ATASL----DAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLIN-----EQEAMEKILKE 81 (346)
T ss_dssp CEEEECTTSHHHHHH-HHHHH----HTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTT-----CHHHHHHHHHH
T ss_pred eEEEECCCcHHHHHH-HHHHH----HCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecC-----CHHHHHHHHhh
Confidence 4666665 4444443 33344 2333 44444432 223333333344457777766655 68889888873
Q ss_pred -CceEEEEecccCcccccccHHHHHHHHHhcC-cEEEE
Q psy8850 136 -DTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHC 171 (397)
Q Consensus 136 -~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~liv 171 (397)
+..+|+..... ..+.....+.+.|++.| +..++
T Consensus 82 ~~~d~Vi~~a~~---~n~~~~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 82 HEIDIVVSTVGG---ESILDQIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp TTCCEEEECCCG---GGGGGHHHHHHHHHHHCCCSEEE
T ss_pred CCCCEEEECCch---hhHHHHHHHHHHHHHcCCceEEe
Confidence 45555443332 12233467888899988 75554
No 258
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=47.70 E-value=25 Score=31.26 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 102 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 102 ~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
.+..++..|++++.+|+...+..+ ......++++++.|.++|++||+|--.
T Consensus 59 ~i~~lk~~G~N~VRip~~~~~~~~-----------------------~~~l~~ld~~v~~a~~~GiyVIlDlH~ 109 (345)
T 3jug_A 59 AIPAIAEQGANTIRIVLSDGGQWE-----------------------KDDIDTVREVIELAEQNKMVAVVEVHD 109 (345)
T ss_dssp HHHHHHHTTCSEEEEEECCSSSSC-----------------------CCCHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred HHHHHHHcCCCEEEEEecCCCccC-----------------------HHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 455555668888888775322111 112334677888888888888888543
No 259
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=47.60 E-value=1.3e+02 Score=25.57 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEc--CCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850 57 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITV--QTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC 134 (397)
Q Consensus 57 ~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~--~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 134 (397)
+....++|.+.+.....++..+.. .++.-+|++. .|.+.+...+ ..+...|+.++.++-.. ... .+.
T Consensus 108 ~~g~~IlT~~~s~Tv~~~l~~a~~--~~~~~~V~v~etrP~~qG~~~a-~~L~~~gI~vtli~dsa-----~~~---~m~ 176 (276)
T 1vb5_A 108 DDGDVIITHSFSSTVLEIIRTAKE--RKKRFKVILTESSPDYEGLHLA-RELEFSGIEFEVITDAQ-----MGL---FCR 176 (276)
T ss_dssp CTTEEEECCSCCHHHHHHHHHHHH--TTCCEEEEEECCTTTTHHHHHH-HHHHHTTCCEEEECGGG-----HHH---HHT
T ss_pred cCCCEEEEeCCChHHHHHHHHHHH--cCCeEEEEEeCCCcchhhHHHH-HHHHHCCCCEEEEcHHH-----HHH---HHc
Confidence 344667765444333334444331 1244667773 4655563333 34444699999887321 111 222
Q ss_pred CCceEEEEe-cccCccccc-cc--HHHHHHHHHhcCcEEEEec
Q psy8850 135 SDTILVSVM-LVNNEIGVI-QP--ILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 135 ~~~~~v~~~-~~~~~tG~~-~~--l~~i~~l~~~~gi~livD~ 173 (397)
+...+++- ..-...|.+ .. --.++.+|+++++++++=+
T Consensus 177 -~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a 218 (276)
T 1vb5_A 177 -EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAA 218 (276)
T ss_dssp -TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEEC
T ss_pred -cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEec
Confidence 44444443 222334433 33 3568888999999888743
No 260
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=46.27 E-value=34 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=30.8
Q ss_pred CCH-HHHHHHhcCCceEEEEecccCccccccc-------HHHHHHHHHhcCcEE
Q psy8850 124 ITL-SQLEEKICSDTILVSVMLVNNEIGVIQP-------ILEIGELCRSKGVIF 169 (397)
Q Consensus 124 ~d~-~~l~~~i~~~~~~v~~~~~~~~tG~~~~-------l~~i~~l~~~~gi~l 169 (397)
+++ +-++.++..+...+++.|.| |.|...| -+++.+.++--|+.+
T Consensus 54 v~pRei~~~Al~~~A~~vIl~HNH-PSG~~~PS~~D~~~T~~l~~a~~ll~I~l 106 (126)
T 2qlc_A 54 IHPREIFKAAIRESAHSIILVHNH-PSGDVQPSNADKQVTSILKKAGDLLQIEL 106 (126)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEEC-SSSCCSCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred ecHHHHHHHHHHcCCcEEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Confidence 344 44566777888888887654 7898877 245777777677754
No 261
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=45.56 E-value=1.1e+02 Score=26.27 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++..+++..+ ++....+.+ |+++..+.- ..+..+.+.+|.+.++ .+.++|+++...++ +.+.
T Consensus 178 ~~~~~v~~H~---af~Yf~~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~ 244 (286)
T 3gi1_A 178 RSKTFVTQHT---AFSYLAKRF---GLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KIAH 244 (286)
T ss_dssp SCCEEEEEES---CCHHHHHHT---TCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HHHH
T ss_pred CCCEEEEECC---chHHHHHHC---CCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHH
Confidence 4567777544 666556667 998876543 3344566777666553 47888888755433 3344
Q ss_pred HHHHhcCcEEEE
Q psy8850 160 ELCRSKGVIFHC 171 (397)
Q Consensus 160 ~l~~~~gi~liv 171 (397)
.++++.|+.++.
T Consensus 245 ~la~~~g~~v~~ 256 (286)
T 3gi1_A 245 AIAKSTGAKVKT 256 (286)
T ss_dssp HHHHTTTCEEEE
T ss_pred HHHHHhCCeEEE
Confidence 568888988764
No 262
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=45.02 E-value=35 Score=28.19 Aligned_cols=39 Identities=10% Similarity=-0.045 Sum_probs=30.0
Q ss_pred HhcCCceEEEEecccCc-----------ccccccHHHHHHHHHhcCcEEEE
Q psy8850 132 KICSDTILVSVMLVNNE-----------IGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 132 ~i~~~~~~v~~~~~~~~-----------tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+..-.+..|+.+ ..|. .|......++.++|++||+.++.
T Consensus 163 LAGl~PagVicE-i~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 163 LAGKRPVAVISE-IVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp HTTCCSBEEEEE-BEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred HcCCCceEEEEE-eCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 334467777666 4456 69999999999999999998764
No 263
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=44.89 E-value=86 Score=24.45 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=23.7
Q ss_pred hcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 133 ICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 133 i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
++++..+|+++. .|....+-++++.++++|+.+|.
T Consensus 85 ~~~~d~~i~iS~----sG~t~~~~~~~~~ak~~g~~vi~ 119 (187)
T 3sho_A 85 LRPTDLMIGVSV----WRYLRDTVAALAGAAERGVPTMA 119 (187)
T ss_dssp CCTTEEEEEECC----SSCCHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCCEEE
Confidence 345555555554 47666778888899999876554
No 264
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=44.73 E-value=13 Score=34.51 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.3
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
++..-|...+++++++-||++|+.||+|.+..
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 44456888899999999999999999998753
No 265
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=43.62 E-value=12 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q psy8850 155 ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a 174 (397)
-++|.++|+++|++++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 47899999999999999965
No 266
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=43.56 E-value=55 Score=26.78 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccC
Q psy8850 68 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNN 147 (397)
Q Consensus 68 t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~ 147 (397)
|+++..+.+.. ..|.+|++..+.-..-........+.|.++..++.+. .+++.+.+..+..+|++.-.+.
T Consensus 43 T~lL~~a~r~~-----~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~-----~~~~~~~~~~~~dvViIDEaQF 112 (214)
T 2j9r_A 43 EELIRRVRRTQ-----FAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA-----SKDIFKHITEEMDVIAIDEVQF 112 (214)
T ss_dssp HHHHHHHHHHH-----HTTCCEEEEECC-----------------CCEEECSS-----GGGGGGGCCSSCCEEEECCGGG
T ss_pred HHHHHHHHHHH-----HCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCC-----HHHHHHHHhcCCCEEEEECccc
Confidence 34555555543 3556666655433221111111122265555555542 2344444444578999998876
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a 174 (397)
-+-. -++.+..++. .|+.||+=+-
T Consensus 113 ~~~~--~V~~l~~l~~-~~~~Vi~~Gl 136 (214)
T 2j9r_A 113 FDGD--IVEVVQVLAN-RGYRVIVAGL 136 (214)
T ss_dssp SCTT--HHHHHHHHHH-TTCEEEEEEC
T ss_pred CCHH--HHHHHHHHhh-CCCEEEEEec
Confidence 3211 1344444444 4999888544
No 267
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=43.42 E-value=1.7e+02 Score=25.74 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred CCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcC--CCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850 57 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ--TEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC 134 (397)
Q Consensus 57 ~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~--~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 134 (397)
.....++|.+.+.....++..... .++..+|++.+ |.+.+ ......+...|+.++.++-+.-+.+ +
T Consensus 140 ~~g~~ILTh~~S~tvl~~l~~A~~--~gk~~~V~v~EtRP~~qG-rltA~eL~~~GI~vtlI~Dsa~~~~--------M- 207 (338)
T 3a11_A 140 EDGDVIMTHCHSKAAISVMKTAWE--QGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHY--------M- 207 (338)
T ss_dssp CTTCEEEECSCCHHHHHHHHHHHH--TTCCCEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGTTTT--------G-
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHH--CCCeEEEEEeCCCCchhh-HHHHHHHHhCCCCEEEEehHHHHHH--------H-
Confidence 444677777666443344443331 13446777765 44445 2333445566999998875533322 1
Q ss_pred CCceEEEEe-cccCccccccc---HHHHHHHHHhcCcEEEEecc
Q psy8850 135 SDTILVSVM-LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 135 ~~~~~v~~~-~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a 174 (397)
.+...|++- ..-...|.+.. --.++-+||.+|++++|=+-
T Consensus 208 ~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 208 KMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp GGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC
T ss_pred HhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEecc
Confidence 234444332 22233454443 35678889999999988654
No 268
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=42.96 E-value=56 Score=27.54 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=35.5
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.+.|.++.....+.+..-..+.++.++..+...|++..... .......+.+++.|++++.
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-----~~~~~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 35 KANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD-----VYIGSAIEEAKKAGIPVFA 94 (293)
T ss_dssp HHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT-----TTTHHHHHHHHHTTCCEEE
T ss_pred HHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-----HHHHHHHHHHHHcCCCEEE
Confidence 34588888776553221123456666677888887764321 1234555667778887654
No 269
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=42.59 E-value=1.6e+02 Score=25.09 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=30.6
Q ss_pred CCCHHHHHHHh-----cCCceEEEEecccCccccc-ccHHHHHHHHHhcCcEEEEecc
Q psy8850 123 LITLSQLEEKI-----CSDTILVSVMLVNNEIGVI-QPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 123 ~~d~~~l~~~i-----~~~~~~v~~~~~~~~tG~~-~~l~~i~~l~~~~gi~livD~a 174 (397)
.++.+++.... -++.++++++.. .+.+.. .-+.++.+.++++|+++++|..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 163 (306)
T 2abq_A 107 LIKKEHVQALLEQLTELEKGDVLVLAGS-VPQAMPQTIYRSMTQIAKERGAFVAVDTS 163 (306)
T ss_dssp CCCHHHHHHHHHHHTTCCTTCEEEEESC-CCTTSCTTHHHHHHHHHHTTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEecC-CCCCCCHHHHHHHHHHHHhcCCEEEEECC
Confidence 35666665432 135667766532 222221 1256788889999999999964
No 270
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=42.14 E-value=46 Score=28.55 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 94 TEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 94 ~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+.|......++.. ...|.++.....+.+..-..+.++.++..+...|++...... .+....+.+++.|++++.
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPvV~ 88 (313)
T 3m9w_A 15 ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQ-----VLSNVVKEAKQEGIKVLA 88 (313)
T ss_dssp STTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTT-----SCHHHHHHHHTTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-----hhHHHHHHHHHCCCeEEE
Confidence 4445555555543 345888887765422111234566667778888887654211 234566667888998764
No 271
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=42.03 E-value=1.5e+02 Score=25.26 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=49.1
Q ss_pred cEEEeCC-hhHHHHHHHHHhHhhhccCCCEE-EEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCc
Q psy8850 60 EIIWTSG-ATESNNLAIKGAAHFYKKRGKHI-ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT 137 (397)
Q Consensus 60 ~i~~~~g-~t~a~~~~l~~l~~~~~~~g~~v-l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~ 137 (397)
.|++|.+ |..+-.++ ..|. +.|..| ++..... ........+...|.+++..++. |.+.+++++.. .
T Consensus 13 ~ilVtGatG~iG~~l~-~~L~----~~g~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~-----d~~~l~~a~~~-~ 80 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMV-KGSL----KLGHPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELD-----EHEKLVELMKK-V 80 (318)
T ss_dssp CEEEETTTSTTHHHHH-HHHH----HTTCCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTT-----CHHHHHHHHTT-C
T ss_pred eEEEECCCchHHHHHH-HHHH----HCCCcEEEEECCCC-chhhHHHHhhcCCCEEEEecCC-----CHHHHHHHHcC-C
Confidence 4666653 44444443 3344 344444 4443321 1222222223347777665554 67888888865 4
Q ss_pred eEEEEecccCcccccccHHHHHHHHHhcC-cEEEE
Q psy8850 138 ILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHC 171 (397)
Q Consensus 138 ~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~liv 171 (397)
..|+..... .. +.....+.+.|++.| +.-++
T Consensus 81 d~vi~~a~~--~~-~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 81 DVVISALAF--PQ-ILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp SEEEECCCG--GG-STTHHHHHHHHHHHCCCCEEE
T ss_pred CEEEECCch--hh-hHHHHHHHHHHHhcCCCCEEE
Confidence 444433221 11 333577888888887 64444
No 272
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=41.81 E-value=49 Score=27.13 Aligned_cols=84 Identities=6% Similarity=0.041 Sum_probs=44.2
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHH
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 163 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~ 163 (397)
..+.++++..+.-..-........+.|.+...++++ +.+++.+.+.++..+|.+.-.++-+-. =++.+.+++
T Consensus 54 ~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~-----~~~di~~~i~~~~dvV~IDEaQFf~~~--~v~~l~~la- 125 (219)
T 3e2i_A 54 YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINIS-----KASEIMTHDLTNVDVIGIDEVQFFDDE--IVSIVEKLS- 125 (219)
T ss_dssp HTTCCEEEEEEC-----------CBTTBCCEEEEES-----SGGGGGGSCCTTCSEEEECCGGGSCTH--HHHHHHHHH-
T ss_pred HcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeC-----CHHHHHHHHhcCCCEEEEechhcCCHH--HHHHHHHHH-
Confidence 345556665553332222112223337766666665 234454445567789999988764321 134555666
Q ss_pred hcCcEEEEeccc
Q psy8850 164 SKGVIFHCDAAQ 175 (397)
Q Consensus 164 ~~gi~livD~a~ 175 (397)
+.|++||+=+--
T Consensus 126 ~~gi~Vi~~GLd 137 (219)
T 3e2i_A 126 ADGHRVIVAGLD 137 (219)
T ss_dssp HTTCEEEEEEES
T ss_pred HCCCEEEEeecc
Confidence 689999986543
No 273
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=41.52 E-value=1e+02 Score=26.52 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=45.9
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEec-cCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLK-PKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGEL 161 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~-~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l 161 (397)
..+++.. +++....+.+ |++...+. +..+..+.+.+|.+.++ .+.++|+++...++ +.+..+
T Consensus 184 ~~~v~~H---~af~Yf~~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~i 250 (294)
T 3hh8_A 184 KLIVTSE---GCFKYFSKAY---GVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDR-------RPMETV 250 (294)
T ss_dssp CCEEEEE---SCCHHHHHHH---TCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTSCS-------HHHHHH
T ss_pred cEEEEEC---ChHHHHHHHc---CCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHHHHH
Confidence 5567644 4666666777 88877653 33444567777766553 47788888765433 345667
Q ss_pred HHhcCcEEE
Q psy8850 162 CRSKGVIFH 170 (397)
Q Consensus 162 ~~~~gi~li 170 (397)
+++.|+.++
T Consensus 251 a~~~g~~v~ 259 (294)
T 3hh8_A 251 SKDSGIPIY 259 (294)
T ss_dssp HHHHCCCEE
T ss_pred HHHhCCcEE
Confidence 888898776
No 274
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=41.25 E-value=1.2e+02 Score=26.40 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=46.4
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++..+++. |+++....+.+ |++...+.- ..+..+.+.+|.++++ .+.++|+++...+ -+.+.
T Consensus 189 ~~~~~v~~---H~af~Yfa~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~-------~~~~~ 255 (312)
T 2o1e_A 189 EKKEFITQ---HTAFGYLAKEY---GLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIAS-------SKVAD 255 (312)
T ss_dssp SCCEEEES---SCTTHHHHHHT---TCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCC-------HHHHH
T ss_pred CCCEEEEE---CCchHHHHHHC---CCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------hHHHH
Confidence 45677775 44666666667 998776632 3344567777776653 3677887765432 24455
Q ss_pred HHHHhcCcEEE
Q psy8850 160 ELCRSKGVIFH 170 (397)
Q Consensus 160 ~l~~~~gi~li 170 (397)
.++++.|+.++
T Consensus 256 ~ia~e~g~~v~ 266 (312)
T 2o1e_A 256 TLASEIGAKTE 266 (312)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHHHhCCcEE
Confidence 56888888764
No 275
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=40.67 E-value=53 Score=29.43 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=36.8
Q ss_pred hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc-----cccHHHHHHHHHhcCcEEEEec
Q psy8850 99 VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV-----IQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 99 ~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~-----~~~l~~i~~l~~~~gi~livD~ 173 (397)
+...+..++..|++.+.+|+....... ..+.|. +.-++++++.|+++|+.+|+|-
T Consensus 64 ~~~di~~i~~~G~N~vRipi~w~~~~~--------------------~~~~~~~~~~~l~~~~~vv~~a~~~Gi~vildl 123 (376)
T 3ayr_A 64 TEDMFKVLIDNQFNVFRIPTTWSGHFG--------------------EAPDYKIDEKWLKRVHEVVDYPYKNGAFVILNL 123 (376)
T ss_dssp CHHHHHHHHHTTCCEEEECCCCTTSBC--------------------CTTTCCBCHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cHHHHHHHHHcCCCEEEEeeEChhhcC--------------------CCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 344555566669999999986322110 112222 2236889999999999999996
Q ss_pred cc
Q psy8850 174 AQ 175 (397)
Q Consensus 174 a~ 175 (397)
-+
T Consensus 124 H~ 125 (376)
T 3ayr_A 124 HH 125 (376)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 276
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=39.88 E-value=61 Score=27.93 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=36.4
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
...|.++.....+.+..-..+.++.++..+..+|++..... .......+.+++.|++++.
T Consensus 30 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~giPvV~ 89 (330)
T 3uug_A 30 QEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG-----TTLSDVLKQAGEQGIKVIA 89 (330)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG-----GGGHHHHHHHHHTTCEEEE
T ss_pred HHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc-----hhHHHHHHHHHHCCCCEEE
Confidence 34588887776442211123456666777888888764421 1245566668888998764
No 277
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=39.85 E-value=39 Score=28.97 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=32.9
Q ss_pred HHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc
Q psy8850 101 DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 101 ~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a 174 (397)
..+..++..|++.+.+|+...+..+ .....-++++++.|+++|+.||+|--
T Consensus 35 ~~~~~i~~~G~N~VRi~~~~~~~~~-----------------------~~~~~~ld~~v~~a~~~Gi~Vild~H 85 (294)
T 2whl_A 35 TAIPAIAEQGANTIRIVLSDGGQWE-----------------------KDDIDTIREVIELAEQNKMVAVVEVH 85 (294)
T ss_dssp HHHHHHHHTTCSEEEEEECCSSSSC-----------------------CCCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEecCCCccC-----------------------ccHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4455566668888888876221110 01223367888889999999999853
No 278
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=39.64 E-value=1.9e+02 Score=25.17 Aligned_cols=105 Identities=15% Similarity=0.034 Sum_probs=56.6
Q ss_pred CCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCC--CChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850 57 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQT--EHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC 134 (397)
Q Consensus 57 ~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~--~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 134 (397)
+....++|.|.+.....++..... .++.-+|++.+. .+.+..- +..+...|+.++.++-+ .+-..+.
T Consensus 120 ~~g~~ILTh~~S~tv~~~l~~A~~--~gk~~~V~v~EsrP~~qG~~l-a~~L~~~gI~vtli~Ds--------a~~~~m~ 188 (315)
T 3ecs_A 120 KDGATILTHAYSRVVLRVLEAAVA--AKKRFSVYVTESQPDLSGKKM-AKALCHLNVPVTVVLDA--------AVGYIME 188 (315)
T ss_dssp CTTEEEEECSCCHHHHHHHHHHHT--TTCCEEEEEECCTTTTHHHHH-HHHHHTTTCCEEEECGG--------GHHHHGG
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHH--cCCeEEEEEecCCCcchHHHH-HHHHHHcCCCEEEEehh--------HHHHHHH
Confidence 445688888777655544443331 133456666543 3333333 34455569988888633 1222222
Q ss_pred CCceEEEE-ecccCccccccc-H--HHHHHHHHhcCcEEEEec
Q psy8850 135 SDTILVSV-MLVNNEIGVIQP-I--LEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 135 ~~~~~v~~-~~~~~~tG~~~~-l--~~i~~l~~~~gi~livD~ 173 (397)
+...|++ ...-...|.+.. + -.++-+|+.+|+++++=+
T Consensus 189 -~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a 230 (315)
T 3ecs_A 189 -KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVA 230 (315)
T ss_dssp -GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEEC
T ss_pred -hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEe
Confidence 3333333 232234454444 3 457778999999988743
No 279
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=39.56 E-value=36 Score=25.00 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc
Q psy8850 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 126 ~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a 174 (397)
++.+++.....++.+++.. |.. -+++.++|+++|+.++- .+
T Consensus 72 ~~~v~e~~~~g~k~v~~~~-----G~~--~~e~~~~a~~~Girvv~-nC 112 (122)
T 3ff4_A 72 LSEYNYILSLKPKRVIFNP-----GTE--NEELEEILSENGIEPVI-GC 112 (122)
T ss_dssp GGGHHHHHHHCCSEEEECT-----TCC--CHHHHHHHHHTTCEEEE-SC
T ss_pred HHHHHHHHhcCCCEEEECC-----CCC--hHHHHHHHHHcCCeEEC-Cc
Confidence 3445665556777776653 442 37899999999999884 44
No 280
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=39.28 E-value=17 Score=33.95 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=26.7
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
+...-|...+++++++-||++|+.||+|.+..
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 102 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVVLN 102 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 33446888889999999999999999998743
No 281
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=39.19 E-value=1.7e+02 Score=25.24 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCHHHHHHHh------cCCceEEEEecccCccccc-ccHHHHHHHHHhcCcEEEEecc
Q psy8850 124 ITLSQLEEKI------CSDTILVSVMLVNNEIGVI-QPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 124 ~d~~~l~~~i------~~~~~~v~~~~~~~~tG~~-~~l~~i~~l~~~~gi~livD~a 174 (397)
++.+++.... -++.++++++.. .+.+.. .-+.++.+.++++|+++++|..
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~ 167 (323)
T 2f02_A 111 VSPEEISNFLENFDQLIKQAEIVTISGS-LAKGLPSDFYQELVQKAHAQEVKVLLDTS 167 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEESC-CCBTSCTTHHHHHHHHHHHTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHHhccCCCEEEEECC-CCCCCChHHHHHHHHHHHHCCCEEEEECC
Confidence 5666654422 145667766532 232222 2257788889999999999965
No 282
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=38.77 E-value=74 Score=26.54 Aligned_cols=57 Identities=7% Similarity=-0.090 Sum_probs=34.7
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE-Ee
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH-CD 172 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li-vD 172 (397)
+.|.++.....+.+..-..+.++..+..+...|++..... ....+.+++.|++++ +|
T Consensus 35 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 35 SRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp TTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHHHHHHHTTSSCEEEES
T ss_pred HCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHHHHHHHHCCCCEEEEe
Confidence 3488888776553221112345555667888888765431 556666778898765 44
No 283
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=38.74 E-value=19 Score=33.15 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEe
Q psy8850 94 TEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 94 ~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD 172 (397)
..+.+...-+..++..|++.+++..- +... + -.=.+.-.+ .++..-|+..+++++++-||++|+.||+|
T Consensus 20 Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-~-------~GY~~~dy~--~idp~~Gt~~df~~lv~~aH~~Gi~VilD 89 (441)
T 1lwj_A 20 GDFRGLKNAVSYLKELGIDFVWLMPVFSSIS-F-------HGYDVVDFY--SFKAEYGSEREFKEMIEAFHDSGIKVVLD 89 (441)
T ss_dssp CCHHHHHHTHHHHHHTTCCEEEECCCEECSS-S-------SCCSCSEEE--EECTTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHhhHHHHHcCCCEEEeCCCcCCCC-C-------CCCCccccc--ccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34455555566666778887776432 1100 0 000122222 23334688888999999999999999999
Q ss_pred ccc
Q psy8850 173 AAQ 175 (397)
Q Consensus 173 ~a~ 175 (397)
.+.
T Consensus 90 ~V~ 92 (441)
T 1lwj_A 90 LPI 92 (441)
T ss_dssp ECT
T ss_pred eCC
Confidence 874
No 284
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=38.48 E-value=18 Score=33.81 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=26.3
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
...-|+..+++++++-||++|+.||+|.+..
T Consensus 76 dp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 106 (485)
T 1wpc_A 76 RTKYGTRSQLQAAVTSLKNNGIQVYGDVVMN 106 (485)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3346888889999999999999999998743
No 285
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=38.47 E-value=19 Score=33.71 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=25.8
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..-|...+++++++-||++|+.||+|.+..
T Consensus 75 p~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 75 TKYGTKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 346888889999999999999999998753
No 286
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=38.22 E-value=1.9e+02 Score=24.64 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCHHHHHHHh---c--CCceEEEEecccCcccccc-cHHHHHHHHHhcCcEEEEecc
Q psy8850 124 ITLSQLEEKI---C--SDTILVSVMLVNNEIGVIQ-PILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 124 ~d~~~l~~~i---~--~~~~~v~~~~~~~~tG~~~-~l~~i~~l~~~~gi~livD~a 174 (397)
++.++++... . +...+++++.. .+.+... -+.++.+.++++|+.+++|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~a~~~~~~v~~D~~ 168 (309)
T 3umo_A 113 LNEDEFRQLEEQVLEIESGAILVISGS-LPPGVKLEKLTQLISAAQKQGIRCIVDSS 168 (309)
T ss_dssp CCHHHHHHHHHHHTTSCTTCEEEEESC-CCTTCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEEcc-CCCCCCHHHHHHHHHHHHhcCCEEEEECC
Confidence 4555554332 2 23446666532 2223211 256778888899999999974
No 287
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=38.20 E-value=1.9e+02 Score=24.71 Aligned_cols=73 Identities=10% Similarity=-0.011 Sum_probs=45.0
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++..+++..+ ++....+.+ |++...+.-. +..+.+.+|.++++ .+.++|+++...++ +.+..
T Consensus 189 ~~~~~v~~H~---af~Yf~~~y---Gl~~~~~~~~-~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~ 254 (291)
T 1pq4_A 189 PQRKFIVFHP---SWAYFARDY---NLVQIPIEVE-GQEPSAQELKQLIDTAKENNLTMVFGETQFST-------KSSEA 254 (291)
T ss_dssp SCCEEEESSC---CCHHHHHHT---TCEEEESCBT-TBCCCHHHHHHHHHHHHTTTCCEEEEETTSCC-------HHHHH
T ss_pred CCCEEEEECC---chHHHHHHC---CCEEeecccC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHHH
Confidence 4567887555 555556666 9887766432 34466777666553 46788888755433 22334
Q ss_pred HHHhcCcEEEE
Q psy8850 161 LCRSKGVIFHC 171 (397)
Q Consensus 161 l~~~~gi~liv 171 (397)
++++.|+.++.
T Consensus 255 ia~~~g~~v~~ 265 (291)
T 1pq4_A 255 IAAEIGAGVEL 265 (291)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHcCCeEEE
Confidence 57888887643
No 288
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=38.09 E-value=51 Score=27.95 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~ 119 (397)
.+.+..+++. ++-+|.+ ++.+.=.......+... . +.+-+....-.+ ....+.+++.|. ++.+...
T Consensus 73 ~egl~~l~~~-~~~~Gl~---~~te~~d~~~~~~l~~~-v-------d~~kIga~~~~n-~~ll~~~a~~~k-PV~lk~G 138 (262)
T 1zco_A 73 EKALRWMREA-ADEYGLV---TVTEVMDTRHVELVAKY-S-------DILQIGARNSQN-FELLKEVGKVEN-PVLLKRG 138 (262)
T ss_dssp HHHHHHHHHH-HHHHTCE---EEEECCCGGGHHHHHHH-C-------SEEEECGGGTTC-HHHHHHHTTSSS-CEEEECC
T ss_pred HHHHHHHHHH-HHHcCCc---EEEeeCCHHhHHHHHhh-C-------CEEEECcccccC-HHHHHHHHhcCC-cEEEecC
Confidence 4455555544 3556766 44444333445555443 3 333333332222 222344433343 3333322
Q ss_pred CCCCCCHHHHHHHhc----C-CceEEEEe----cccCcccccccHHHHHHHHHhcCcEEEEecccccCcc
Q psy8850 120 NNGLITLSQLEEKIC----S-DTILVSVM----LVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180 (397)
Q Consensus 120 ~~~~~d~~~l~~~i~----~-~~~~v~~~----~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~ 180 (397)
.. .+++++..++. . +..++++. ...+.+-...++..+..+.+..+++||+|..|+.|..
T Consensus 139 ~~--~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~ 206 (262)
T 1zco_A 139 MG--NTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRR 206 (262)
T ss_dssp TT--CCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCSG
T ss_pred CC--CCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCcc
Confidence 21 27888887763 1 44555544 2223333445677888877777999999999997753
No 289
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=37.96 E-value=19 Score=34.08 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=26.2
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
...-|...+++++++.||++|+.||+|.+..
T Consensus 75 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 105 (515)
T 1hvx_A 75 RTKYGTKAQYLQAIQAAHAAGMQVYADVVFD 105 (515)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 3346888889999999999999999998743
No 290
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=37.62 E-value=20 Score=33.10 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=26.1
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
...-|...+++++++-||++|+.||+|.+..
T Consensus 80 d~~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 110 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 3345888889999999999999999998753
No 291
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=36.52 E-value=1.9e+02 Score=24.33 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=30.8
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC-cEEEE
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHC 171 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~liv 171 (397)
..|.+++..++. |.+.+++++.. ..+|+...... .+.....+.+.|++.| +.-++
T Consensus 55 ~~~v~~v~~D~~-----d~~~l~~~~~~-~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 55 ASGANIVHGSID-----DHASLVEAVKN-VDVVISTVGSL---QIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp TTTCEEECCCTT-----CHHHHHHHHHT-CSEEEECCCGG---GSGGGHHHHHHHHHHCCCSEEE
T ss_pred hCCCEEEEeccC-----CHHHHHHHHcC-CCEEEECCcch---hhhhHHHHHHHHHhcCCCceEe
Confidence 346666544443 67888888765 44443332211 1233467888888887 54333
No 292
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=36.44 E-value=1.3e+02 Score=22.48 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=57.0
Q ss_pred CCCCcEEEeCCh--hHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC-C-CCHHHHHH
Q psy8850 56 ADPREIIWTSGA--TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG-L-ITLSQLEE 131 (397)
Q Consensus 56 ~~~~~i~~~~g~--t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~-~-~d~~~l~~ 131 (397)
.|...++++-+. -..+...++.+. .-|-+++.+. ++ ...+...|+.+..|..-..| . -+...+.+
T Consensus 22 lP~~gvliSv~d~dK~~l~~~a~~l~----~lGf~i~AT~----GT---a~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d 90 (143)
T 2yvq_A 22 IPQKGILIGIQQSFRPRFLGVAEQLH----NEGFKLFATE----AT---SDWLNANNVPATPVAWPSQEGQNPSLSSIRK 90 (143)
T ss_dssp CCCSEEEEECCGGGHHHHHHHHHHHH----TTTCEEEEEH----HH---HHHHHHTTCCCEEECCGGGC-----CBCHHH
T ss_pred CCCCCEEEEecccchHHHHHHHHHHH----HCCCEEEECc----hH---HHHHHHcCCeEEEEEeccCCCcccccccHHH
Confidence 443335666555 233333444454 6788888543 33 33344458888877543222 2 00023555
Q ss_pred HhcC-CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEe
Q psy8850 132 KICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 132 ~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD 172 (397)
+|.+ +..+|+.+.-.+ .....+-..|.+.|-+|+++++-.
T Consensus 91 ~i~~g~i~lVInt~~~~-~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 91 LIRDGSIDLVINLPNNN-TKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HHHTTSCCEEEECCCCC-GGGHHHHHHHHHHHHHTTCCEECS
T ss_pred HHHCCCceEEEECCCCC-CcCCccHHHHHHHHHHhCCCeEcC
Confidence 5655 567776553221 122334567889999999998865
No 293
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=36.37 E-value=18 Score=25.12 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q psy8850 155 ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a 174 (397)
-++|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 47899999999999999965
No 294
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=36.16 E-value=17 Score=25.57 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q psy8850 155 ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a 174 (397)
-++|.++|+++|++++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 47899999999999999965
No 295
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=36.06 E-value=21 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=25.8
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..-|...+++++++-||++|+.||+|.+..
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 92 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIVIN 92 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 335888889999999999999999998754
No 296
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=35.85 E-value=22 Score=33.69 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=25.6
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|+..+++++++-||++|+.||+|-+..
T Consensus 75 ~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 103 (549)
T 4aie_A 75 QYGTMADMDELISKAKEHHIKIVMDLVVN 103 (549)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 36888889999999999999999998753
No 297
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=35.74 E-value=30 Score=30.75 Aligned_cols=83 Identities=11% Similarity=0.013 Sum_probs=45.8
Q ss_pred cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceE
Q psy8850 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTIL 139 (397)
Q Consensus 60 ~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~ 139 (397)
.|+-+++|..|..++..+-.. +-+-.|+++...-......++.+ |.+|+.++...+..-+.....+...+.+..
T Consensus 89 ~Vv~aSsGN~g~alA~~aa~~---G~~~~IvmP~~~~~~k~~~~~~~---GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (344)
T 3vc3_A 89 TLIEPTSGNMGISMAFMAAMK---GYKMVLTMPSYTSLERRVTMRAF---GAELILTDPAKGMGGTVKKAYELLENTPNA 162 (344)
T ss_dssp EEEEECSSHHHHHHHHHHHHH---TCEEEEEEETTSCHHHHHHHHHT---TCEEEEECGGGHHHHHHHHHHHHHHHSTTE
T ss_pred EEEEeCCcHHHHHHHHHHHHc---CCcEEEEECCCChHHHHHHHHHc---CCEEEEECCCCcchHHHHHHHHHHhhccCc
Confidence 477777777777766554332 33467788776555555555555 999998864321111122222233344555
Q ss_pred EEEecccCc
Q psy8850 140 VSVMLVNNE 148 (397)
Q Consensus 140 v~~~~~~~~ 148 (397)
+++....||
T Consensus 163 ~~~~~~~np 171 (344)
T 3vc3_A 163 HMLQQFSNP 171 (344)
T ss_dssp ECCCTTTCH
T ss_pred eeccccccc
Confidence 555544454
No 298
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=35.11 E-value=23 Score=33.67 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=26.3
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..-|...+++++++-||++|+.||+|-+..
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 446888899999999999999999998754
No 299
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=34.86 E-value=19 Score=33.60 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=27.1
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
++..-|...+++++++-||++|+.||+|.+..
T Consensus 67 idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 98 (471)
T 1jae_A 67 INTRSGDESAFTDMTRRCNDAGVRIYVDAVIN 98 (471)
T ss_dssp SEETTEEHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44446888899999999999999999998753
No 300
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=34.59 E-value=2.1e+02 Score=25.08 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=47.5
Q ss_pred CCEEEEcCCCChhhHHHHHHH---hhCCcEEEEeccCCCCCCCHHHHHHHhc---C--CceEEEEecccCcccccccHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKPKNNGLITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILE 157 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~---~~~g~~v~~v~~~~~~~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~ 157 (397)
+-.|++...+ .++..+++.. ...|+.-..+-......++-+.+.+..+ + ...+++...|. .||..++.+.
T Consensus 103 rvpViaGvg~-~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~-~tg~~l~~e~ 180 (332)
T 2r8w_A 103 RRTLMAGIGA-LRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPT-TTRFTFSDEL 180 (332)
T ss_dssp SSEEEEEECC-SSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHH-HHCCCCCHHH
T ss_pred CCcEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCcCCCHHH
Confidence 3456554432 3444444433 3337665544333333455566554432 2 33455444443 3898899999
Q ss_pred HHHHHHhcCcEEEEecc
Q psy8850 158 IGELCRSKGVIFHCDAA 174 (397)
Q Consensus 158 i~~l~~~~gi~livD~a 174 (397)
+.++++--+|.=|=|..
T Consensus 181 ~~~La~~pnIvgiKdss 197 (332)
T 2r8w_A 181 LVRLAYIPNIRAIKMPL 197 (332)
T ss_dssp HHHHHTSTTEEEEEECC
T ss_pred HHHHHcCCCEEEEEeCC
Confidence 99998644665566655
No 301
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=34.47 E-value=25 Score=32.86 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=26.8
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
++..-|...+++++++-||++|+.||+|.+..
T Consensus 90 idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 90 LNENYGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp ECTTSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 33446888889999999999999999998753
No 302
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=34.37 E-value=2.3e+02 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q psy8850 155 ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a 174 (397)
+.++.+.++++|+.+++|..
T Consensus 173 ~~~~~~~a~~~g~~v~~Dp~ 192 (336)
T 4du5_A 173 ARKTMDLMRAAGRSVSFDPN 192 (336)
T ss_dssp HHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEeCc
Confidence 35677778899999999976
No 303
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=34.36 E-value=19 Score=25.39 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q psy8850 155 ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a 174 (397)
-++|.++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 47899999999999999965
No 304
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=34.34 E-value=24 Score=32.34 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc
Q psy8850 96 HKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 96 ~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a 174 (397)
+.+...-+..++..|++.+++..- +...-+ -.+.-.+ .++..-|...+++++++-||++|+.||+|-+
T Consensus 35 l~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~---------y~~~dy~--~idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V 103 (424)
T 2dh2_A 35 LAGLKGRLDYLSSLKVKGLVLGPIHKNQKDD---------VAQTDLL--QIDPNFGSKEDFDSLLQSAKKKSIRVILDLT 103 (424)
T ss_dssp HHHHHTTHHHHHHTTCSEEEECCCEEECTTC---------STTEEEE--EECGGGCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCC---------CCccccc--ccCccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 334444455566668887776331 110001 0122222 2333468888999999999999999999987
Q ss_pred cc
Q psy8850 175 QA 176 (397)
Q Consensus 175 ~~ 176 (397)
..
T Consensus 104 ~N 105 (424)
T 2dh2_A 104 PN 105 (424)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 305
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=34.21 E-value=2.2e+02 Score=24.23 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=32.9
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC-cEEEE
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHC 171 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~liv 171 (397)
..+.+++..++. |.+.+++++.. ...|+..... .. +.....+.+.|++.| +.-++
T Consensus 55 ~~~v~~v~~D~~-----d~~~l~~a~~~-~d~vi~~a~~--~~-~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 55 SMGVTIIEGEME-----EHEKMVSVLKQ-VDIVISALPF--PM-ISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp HTTCEEEECCTT-----CHHHHHHHHTT-CSEEEECCCG--GG-SGGGHHHHHHHHHHCCCCEEE
T ss_pred cCCcEEEEecCC-----CHHHHHHHHcC-CCEEEECCCc--cc-hhhHHHHHHHHHHhCCccEEe
Confidence 347676665554 67888888875 4444433221 11 333567888898888 64444
No 306
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=34.12 E-value=24 Score=32.86 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 96 HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 96 ~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
+.+....+..++..|++.+++..--...- ...-...-+..++..-|+..+++++++-||++|+.||+|-+.
T Consensus 49 ~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~---------~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~ 119 (475)
T 2z1k_A 49 LWGVAEKLPYLLDLGVEAIYLNPVFASTA---------NHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVF 119 (475)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEEESS---------TTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCC---------CCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 33444444455555887776643110000 011222222223444688888999999999999999999875
Q ss_pred c
Q psy8850 176 A 176 (397)
Q Consensus 176 ~ 176 (397)
.
T Consensus 120 N 120 (475)
T 2z1k_A 120 N 120 (475)
T ss_dssp S
T ss_pred c
Confidence 3
No 307
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=34.03 E-value=88 Score=22.87 Aligned_cols=51 Identities=6% Similarity=-0.031 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 123 ~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
.++.++++..+.+++.++++-... .+...+.+++.+..+++||-+-+-.+.
T Consensus 48 ~l~~~~l~~ll~~~~evliiGtG~--~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 48 GVQPADVKEVVEKGVQTLVIGRGM--SEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp CCCHHHHHHHHTTCCSEEEEEECS--SCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred HCCHHHHHHHhhCCCCEEEECCCC--CCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 378899999999999999886442 333324577888899999987666543
No 308
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=33.97 E-value=42 Score=30.30 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=36.2
Q ss_pred CCHHHHHHHhc-----CCceEEEEec-c-cCcc-c-ccccHHHHHHHHHhcCcEEEEecccccCcc
Q psy8850 124 ITLSQLEEKIC-----SDTILVSVML-V-NNEI-G-VIQPILEIGELCRSKGVIFHCDAAQAVGKI 180 (397)
Q Consensus 124 ~d~~~l~~~i~-----~~~~~v~~~~-~-~~~t-G-~~~~l~~i~~l~~~~gi~livD~a~~~~~~ 180 (397)
.++++++.++. -+..++++.. . .+|+ + ...++..|..+.+..+++|++|.+|+.|..
T Consensus 260 ~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G~r 325 (385)
T 3nvt_A 260 ATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTGRK 325 (385)
T ss_dssp CCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCCcc
Confidence 46777766653 1345554443 2 3343 2 345677787777778999999999887643
No 309
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=33.94 E-value=23 Score=32.78 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=25.1
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
...|...+++++++-||++|+.||+|.+.
T Consensus 78 ~~~Gt~~~~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 78 PEYGTLADFKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 34577788999999999999999999874
No 310
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=33.86 E-value=68 Score=28.09 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.0
Q ss_pred cHHHHHHHHHhcCcEEEEecc
Q psy8850 154 PILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 154 ~l~~i~~l~~~~gi~livD~a 174 (397)
.++++++.|.++|++||+|--
T Consensus 106 ~ld~~v~~a~~~Gi~VilD~H 126 (327)
T 3pzt_A 106 KVKEAVEAAKELGIYVIIDWH 126 (327)
T ss_dssp HHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEec
Confidence 368899999999999999953
No 311
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=33.83 E-value=1.2e+02 Score=28.90 Aligned_cols=79 Identities=10% Similarity=-0.015 Sum_probs=52.9
Q ss_pred cCCCEEEEcCCCChhhHHHHH----HHhhCCcEEEEe---ccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850 84 KRGKHIITVQTEHKSVLDSIR----KLENDGFRVTYL---KPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~----~~~~~g~~v~~v---~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l 155 (397)
+++|.|+++...-+++..... .+.+.|+++..- ...-.|+.+-++|...++. +|+.++..|. -..-+
T Consensus 322 ~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHG-----e~~~~ 396 (555)
T 3zq4_A 322 NPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHG-----EYRMQ 396 (555)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESB-----CHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCC-----CHHHH
Confidence 467899999887777664433 234458887651 1223577899999988864 6887777664 33345
Q ss_pred HHHHHHHHhcCc
Q psy8850 156 LEIGELCRSKGV 167 (397)
Q Consensus 156 ~~i~~l~~~~gi 167 (397)
...++++++.|+
T Consensus 397 ~~~~~~a~~~G~ 408 (555)
T 3zq4_A 397 KMHVKLATDCGI 408 (555)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 666777777665
No 312
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=33.76 E-value=25 Score=32.94 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=25.1
Q ss_pred cccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
.-|+..+++++++-||++|+.||+|.+.
T Consensus 77 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 104 (488)
T 1wza_A 77 DYGTLEDFHKLVEAAHQRGIKVIIDLPI 104 (488)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3688888999999999999999999874
No 313
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=33.38 E-value=2.1e+02 Score=25.01 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=54.5
Q ss_pred EEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHH-HHHhhCCcEEEEecc-------------CCCC-----
Q psy8850 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGFRVTYLKP-------------KNNG----- 122 (397)
Q Consensus 62 ~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~g~~v~~v~~-------------~~~~----- 122 (397)
....||+.++.+...+-. ..+..++..-.-..+...+ +.+.+.|+....+.. +++|
T Consensus 76 ~~~~GG~~~N~A~~la~L-----G~~~~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~~T~~~~v~v~~~g~r~~~ 150 (352)
T 4e3a_A 76 LEASGGSAGNTAAGVANL-----GGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMIFVTEDGERSMN 150 (352)
T ss_dssp EEEECCHHHHHHHHHHHH-----TCCEEEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSSCCEEEEEEECTTSCEEEE
T ss_pred cEecCCHHHHHHHHHHHc-----CCCeEEEEEECCChHHHHHHHHHHHcCCccceeeccCCCCCeEEEEEEcCCCceEEE
Confidence 455788766666555433 2355566555443333322 334444654433322 1111
Q ss_pred -------CCCHHHHHHHhcCCceEEEEecccCccc--ccccHHHHHHHHHhcCcEEEEecc
Q psy8850 123 -------LITLSQLEEKICSDTILVSVMLVNNEIG--VIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 123 -------~~d~~~l~~~i~~~~~~v~~~~~~~~tG--~~~~l~~i~~l~~~~gi~livD~a 174 (397)
.++.+++....-++.++++++... ... ...-+.++.+.++++|+.+++|-.
T Consensus 151 ~~~ga~~~l~~~~~~~~~~~~~~~v~~~G~~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 210 (352)
T 4e3a_A 151 TYLGACVELGPEDVEADVVADAKVTYFEGYL-WDPPRAKEAILDCARIAHQHGREMSMTLS 210 (352)
T ss_dssp EECGGGGGCCGGGCCHHHHHTEEEEEEEGGG-GSSSSHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred eccChhhcCChhhCCHHHHhhCCEEEEeeee-cCCchHHHHHHHHHHHHHHcCCEEEEECC
Confidence 123333332222356777776432 111 111256778889999999999975
No 314
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=33.36 E-value=72 Score=27.35 Aligned_cols=55 Identities=7% Similarity=-0.027 Sum_probs=39.2
Q ss_pred EEEEeccCCCCCCCH-----HHHHHHhcCCceEEEEecccCccccc-ccHHHHHHHHHhcCcEEE
Q psy8850 112 RVTYLKPKNNGLITL-----SQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGELCRSKGVIFH 170 (397)
Q Consensus 112 ~v~~v~~~~~~~~d~-----~~l~~~i~~~~~~v~~~~~~~~tG~~-~~l~~i~~l~~~~gi~li 170 (397)
-+......++..+|+ +.++.+.....+.+++.. .|++ .+-+++.+.|+++|+-++
T Consensus 215 ~~k~~k~~qD~~fd~P~iG~dti~~~~~ag~~~ivi~~----g~si~~~~~~~i~~a~~~gi~~~ 275 (283)
T 4ggi_A 215 LAKAPKPIQETRVALPTIGVATIHRAARAGLAGIVGEA----GRLLVVDREAVIAAADDLGLFVL 275 (283)
T ss_dssp EEECCCCC---CCCCCEECHHHHHHHHHTTCCEEEEET----TBCEETTHHHHHHHHHHHTCEEE
T ss_pred eecccccccccccCCccccHHHHHHHHHcCCeEEEEcC----CCcEEeCHHHHHHHHHHcCCEEE
Confidence 333334446666676 889999889999988874 4665 578999999999999765
No 315
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=33.32 E-value=18 Score=35.95 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=23.5
Q ss_pred cccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 150 GVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 150 G~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
|...+++++++-||++|+.||+|.++.
T Consensus 313 ~~~~dfk~LV~~aH~~GI~VIlDvV~N 339 (718)
T 2e8y_A 313 TRKTELKQMINTLHQHGLRVILDVVFN 339 (718)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 456789999999999999999998864
No 316
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=32.99 E-value=1.1e+02 Score=25.73 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=33.7
Q ss_pred CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++..+... +..-..+.++.++..+...|++..... .......+.+++.|++++.
T Consensus 31 ~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~-----~~~~~~~~~~~~~~iPvV~ 87 (306)
T 8abp_A 31 LGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDP-----KLGSAIVAKARGYDMKVIA 87 (306)
T ss_dssp HTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCG-----GGHHHHHHHHHHTTCEEEE
T ss_pred cCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCc-----hhhHHHHHHHHHCCCcEEE
Confidence 38888766542 111113446666777888888765421 1344555667888998764
No 317
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=32.94 E-value=24 Score=32.26 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCChhhHHHHHHHhhCCcEEEEeccC-C--CCCCCHHHHHH-HhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEE
Q psy8850 94 TEHKSVLDSIRKLENDGFRVTYLKPK-N--NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF 169 (397)
Q Consensus 94 ~~~~s~~~~~~~~~~~g~~v~~v~~~-~--~~~~d~~~l~~-~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~l 169 (397)
..+......+..++..|++.+++..- + .+...-..+.. -..=.+.-... ++...|...+++++++-||++|+.|
T Consensus 14 ~~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~--~~~~~G~~~d~~~lv~~~h~~Gi~V 91 (422)
T 1ua7_A 14 WSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQI--GNRYLGTEQEFKEMCAAAEEYGIKV 91 (422)
T ss_dssp BCHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEE--EETTTEEHHHHHHHHHHHHTTTCEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeec--cCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455555556667779888777441 1 11000000000 00012222222 2233588889999999999999999
Q ss_pred EEecccc
Q psy8850 170 HCDAAQA 176 (397)
Q Consensus 170 ivD~a~~ 176 (397)
|+|.+..
T Consensus 92 ilD~V~N 98 (422)
T 1ua7_A 92 IVDAVIN 98 (422)
T ss_dssp EEEECCS
T ss_pred EEEeccC
Confidence 9998753
No 318
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=32.92 E-value=26 Score=32.73 Aligned_cols=78 Identities=13% Similarity=0.268 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850 96 HKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 96 ~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~ 173 (397)
+.+....+..++..|++.+++..- +....+.. .-.. ..-...-.-.++..-|...+++++++-||++|+.||+|.
T Consensus 42 ~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~---~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~ 118 (484)
T 2aaa_A 42 WQGIIDHLDYIEGMGFTAIWISPITEQLPQDTA---DGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDV 118 (484)
T ss_dssp HHHHHHTHHHHHTTTCCEEEECCCEEECCCCBT---TBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeCccccCcccccc---cCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344444455666678888777432 11111100 0000 011122222344456888889999999999999999998
Q ss_pred ccc
Q psy8850 174 AQA 176 (397)
Q Consensus 174 a~~ 176 (397)
+..
T Consensus 119 V~N 121 (484)
T 2aaa_A 119 VPD 121 (484)
T ss_dssp CCS
T ss_pred CcC
Confidence 753
No 319
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=32.59 E-value=78 Score=27.96 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=11.1
Q ss_pred CCCEEEEcCCCChhhHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIR 104 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~ 104 (397)
.|..|++...+-+...-..+
T Consensus 73 ~g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 73 DDRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp TTCEEEEEESSSCHHHHHHH
T ss_pred cCCeEEEEeCCCCHHHHHHH
Confidence 45667666666655443333
No 320
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=32.57 E-value=1.7e+02 Score=24.98 Aligned_cols=80 Identities=6% Similarity=0.057 Sum_probs=44.7
Q ss_pred CEEEEcCCCChhhHHHHHH----HhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRK----LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~----~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~ 162 (397)
...++.++...+.....+. +...|++++........ ++....+.+.++..++++..-+ ...-..+.+..++
T Consensus 142 ~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~l~~~~d~i~~~~d~---~~~~~~~~i~~~~ 216 (302)
T 3lkv_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSA--DVQSATQAIAEKSDVIYALIDN---TVASAIEGMIVAA 216 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGG--GHHHHHHHHHTTCSEEEECSCH---HHHHTHHHHHHHH
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChH--HHHHHHHhccCCeeEEEEeCCc---chhhHHHHHHHHH
Confidence 3435555544433322222 23348888877765332 3444444455677777765432 2233467788888
Q ss_pred HhcCcEEEE
Q psy8850 163 RSKGVIFHC 171 (397)
Q Consensus 163 ~~~gi~liv 171 (397)
++.+++++.
T Consensus 217 ~~~~iPv~~ 225 (302)
T 3lkv_A 217 NQAKTPVFG 225 (302)
T ss_dssp HHTTCCEEE
T ss_pred hhcCCceee
Confidence 888887763
No 321
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=32.32 E-value=1.6e+02 Score=25.35 Aligned_cols=37 Identities=11% Similarity=-0.052 Sum_probs=24.1
Q ss_pred ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc
Q psy8850 137 TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a 174 (397)
..+++...|. .||..++.+.+.++++--++.=|=|.+
T Consensus 127 lPiilYn~P~-~tg~~l~~~~~~~La~~pnIvgiKds~ 163 (297)
T 2rfg_A 127 IPIIVYNIPP-RAVVDIKPETMARLAALPRIVGVKDAT 163 (297)
T ss_dssp SCEEEEECHH-HHSCCCCHHHHHHHHTSTTEEEEEECS
T ss_pred CCEEEEeCcc-ccCCCCCHHHHHHHHcCCCEEEEEeCC
Confidence 3455554443 378888999999998644555555654
No 322
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=32.28 E-value=25 Score=32.90 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.8
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
++..-|+..+++++++-||++|+.||+|-+..
T Consensus 95 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 126 (488)
T 2wc7_A 95 VDPMLGGNEAFKELLDAAHQRNIKVVLDGVFN 126 (488)
T ss_dssp ECGGGTHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 33446888889999999999999999998753
No 323
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=32.26 E-value=22 Score=35.23 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=22.6
Q ss_pred ccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 151 VIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 151 ~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
...+++++++-||++||.||+|.++.
T Consensus 253 ~~~efk~lV~~~H~~Gi~VilDvV~N 278 (714)
T 2ya0_A 253 RIAEFKNLINEIHKRGMGAILDVVYN 278 (714)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 35678999999999999999998864
No 324
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=32.13 E-value=50 Score=27.59 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCceEEEEecccCc---------cccccc-HHHHHHHHHhcCcEEEEecc
Q psy8850 126 LSQLEEKICSDTILVSVMLVNNE---------IGVIQP-ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 126 ~~~l~~~i~~~~~~v~~~~~~~~---------tG~~~~-l~~i~~l~~~~gi~livD~a 174 (397)
.+.+++++.....+|-+=....+ ...... .+++.++|++||+++|+++-
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~ 104 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR 104 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH
Confidence 56677777777777777655422 122222 36789999999999999643
No 325
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.74 E-value=1e+02 Score=25.80 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=36.3
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE-Ee
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH-CD 172 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li-vD 172 (397)
.+.|.++.....+.+..-..+.++.++..+...+++...... ...+..+..+.+++.|++++ +|
T Consensus 42 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 42 SEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSA--LQTPNIGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTT--SCCTTHHHHHHHHHTTCCEEEES
T ss_pred HHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccccc--ccCCcHHHHHHHHhcCCCEEEEe
Confidence 345888887765532211234455566678888887644211 11233455566777898765 44
No 326
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=31.68 E-value=84 Score=20.57 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.5
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850 344 SSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374 (397)
Q Consensus 344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 374 (397)
..+|||++. .+..+-+++...|.+++.++.
T Consensus 46 krvrisita-rtkkeaekfaailikvfaelg 75 (106)
T 1qys_A 46 KRVRISITA-RTKKEAEKFAAILIKVFAELG 75 (106)
T ss_dssp SEEEEEEEC-SSHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEEEEe-cchhHHHHHHHHHHHHHHHhC
Confidence 678999987 578999999999998888763
No 327
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=31.63 E-value=1.9e+02 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEe
Q psy8850 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 126 ~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD 172 (397)
...+...++++..+|.++. .|....+-++++.++++|+.+|.=
T Consensus 105 ~~~l~~~~~~~Dvvi~iS~----SG~t~~~~~~~~~ak~~g~~vi~i 147 (201)
T 3trj_A 105 AKQVAALGNEDDILLVITT----SGDSENILSAVEEAHDLEMKVIAL 147 (201)
T ss_dssp HHHHHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCcEEEE
Confidence 3445555666666666654 477677888889999999877653
No 328
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=31.24 E-value=1.6e+02 Score=21.75 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=29.6
Q ss_pred HHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEe
Q psy8850 126 LSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 126 ~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD 172 (397)
.+.+..++. .++.+++++. ...|-+++.++|+++|++|+.=
T Consensus 63 ~~~~l~a~~~~~~~~iIlt~------g~~~~~~i~~~A~~~~ipvl~t 104 (139)
T 2ioj_A 63 SDLLLTALEMPNVRCLILTG------NLEPVQLVLTKAEERGVPVILT 104 (139)
T ss_dssp HHHHHHHTTCTTEEEEEEET------TCCCCHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhCCCCcEEEEcC------CCCCCHHHHHHHHHCCCeEEEE
Confidence 344455665 6788888863 3456788889999999988763
No 329
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=31.23 E-value=1.8e+02 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=23.7
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850 345 SIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375 (397)
Q Consensus 345 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (397)
.-||+-+.-++.+||.+++.-.++.-+-.++
T Consensus 401 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~ 431 (433)
T 3kl4_A 401 MRRIAEGSGLEVEEVRELLEWYNNMNRLLKM 431 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3588877778999999999888777655544
No 330
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=31.15 E-value=57 Score=28.83 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc-----cccHHHHHHHHHhcCcEEEEeccc
Q psy8850 101 DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV-----IQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 101 ~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~-----~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
..++.++..|++.+.+|+.-....+ + .+.|. +.-++++++.|+++|+.+|+|--+
T Consensus 46 ~di~~i~~~G~n~vRipi~w~~~~~---------~-----------~~~~~~~~~~l~~l~~~v~~a~~~Gi~vildlH~ 105 (345)
T 3ndz_A 46 AMINKIKEAGFNTLRLPVTWDGHMG---------A-----------APEYTIDQTWMKRVEEIANYAFDNDMYVIINLHH 105 (345)
T ss_dssp HHHHHHHHHTCCEEEECCCCTTSBC---------C-----------TTTCCBCHHHHHHHHHHHHHHHTTTCEEEECCCS
T ss_pred HHHHHHHHCCCCEEEEeeehHHhCC---------C-----------CCCCccCHHHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3444455559999999987332111 0 01222 223688999999999999999654
Q ss_pred c
Q psy8850 176 A 176 (397)
Q Consensus 176 ~ 176 (397)
.
T Consensus 106 ~ 106 (345)
T 3ndz_A 106 E 106 (345)
T ss_dssp C
T ss_pred c
Confidence 4
No 331
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=31.12 E-value=2.5e+02 Score=23.96 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=45.7
Q ss_pred CEEEEcCC--CCh-----hhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850 87 KHIITVQT--EHK-----SVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 87 ~~vl~~~~--~~~-----s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
|.+++..+ ... ....+++.+.+.| ++..+.+.. .+.+.+++++.. +.++-+ ..|+.-. .+ .++.
T Consensus 152 Dl~llH~p~~d~~~~~~~e~~~al~~l~~~G-kir~iGvSn---~~~~~l~~~~~~-~~~~Q~--~~~~~~~-~~-~~l~ 222 (292)
T 4exb_A 152 ELVLVHSDGNDLDILENSEVYPTLAALKREG-LIGAYGLSG---KTVEGGLRALRE-GDCAMV--TYNLNER-AE-RPVI 222 (292)
T ss_dssp EEEEEECCSCHHHHHHHSSHHHHHHHHHHTT-SEEEEEEEC---SSHHHHHHHHHH-SSEEEE--ECSSSCC-TT-HHHH
T ss_pred eEEEEecCCCCccccchHHHHHHHHHHHHCC-CceEEEeCC---CCHHHHHHHHHh-hcEEee--ccccccC-CH-HHHH
Confidence 55666666 221 3334444444444 455555542 367778877765 444433 2233222 22 7899
Q ss_pred HHHHhcCcEEEEecccc
Q psy8850 160 ELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 160 ~l~~~~gi~livD~a~~ 176 (397)
+.|+++|+.++.=...+
T Consensus 223 ~~~~~~gi~v~a~spL~ 239 (292)
T 4exb_A 223 EYAAAHAKGILVKKALA 239 (292)
T ss_dssp HHHHHTTCEEEEECCSC
T ss_pred HHHHHCCcEEEEecccc
Confidence 99999999887654444
No 332
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=31.03 E-value=1.7e+02 Score=27.83 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=53.9
Q ss_pred cCCCEEEEcCCCChhhHHHHH----HHhhCCcEEEEec---cCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850 84 KRGKHIITVQTEHKSVLDSIR----KLENDGFRVTYLK---PKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~----~~~~~g~~v~~v~---~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l 155 (397)
++++.|+++...-+++..... .+.+.|+++.... +.-.++.|.++|...+.. +|+.++..|. ....+
T Consensus 337 ~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHG-----e~~~~ 411 (562)
T 3bk2_A 337 KPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHG-----EVRHQ 411 (562)
T ss_dssp CTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESB-----CHHHH
T ss_pred CCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcC-----CHHHH
Confidence 578899998877777644322 2334588887543 123577899999988865 7888888775 33345
Q ss_pred HHHHHHHHhcCc
Q psy8850 156 LEIGELCRSKGV 167 (397)
Q Consensus 156 ~~i~~l~~~~gi 167 (397)
...++++++.|+
T Consensus 412 ~~~~~~~~~~g~ 423 (562)
T 3bk2_A 412 MNFKWLAESMSR 423 (562)
T ss_dssp HHHHHHHHTSSS
T ss_pred HHHHHHHHHcCC
Confidence 667778887775
No 333
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=31.01 E-value=30 Score=33.05 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.0
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..-|...+++++++.||++|+.||+|-+..
T Consensus 74 p~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 103 (557)
T 1zja_A 74 KEYGTMEDFDRLMAELKKRGMRLMVDVVIN 103 (557)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 346888889999999999999999998753
No 334
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=30.83 E-value=29 Score=33.28 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=25.6
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|+..+++++++-||++|+.||+|-+..
T Consensus 88 ~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 116 (570)
T 1m53_A 88 EYGTMEDFDSLVAEMKKRNMRLMIDVVIN 116 (570)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 46888889999999999999999998753
No 335
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=30.74 E-value=1.3e+02 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=20.2
Q ss_pred CCEEEEcCCC-ChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850 86 GKHIITVQTE-HKSVLDSIRKLENDGFRVTYLKPKN 120 (397)
Q Consensus 86 g~~vl~~~~~-~~s~~~~~~~~~~~g~~v~~v~~~~ 120 (397)
+-+|+++... -......++.+ |.+++.++-+.
T Consensus 97 ~~~iv~p~~~~~~~k~~~~~~~---GA~v~~~~~~~ 129 (325)
T 1j0a_A 97 DAILVLRGKEELKGNYLLDKIM---GIETRVYDAKD 129 (325)
T ss_dssp EEEEEEESCCCSCHHHHHHHHT---TCEEEEESCCS
T ss_pred cEEEEECCCCCCCchHHHHHHC---CCEEEEeCcch
Confidence 3566776655 44454444444 99999988653
No 336
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.73 E-value=74 Score=26.72 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=35.1
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.+.|.++.....+.+..-..+.++.++..+..+|++..... .......+.+++.|++++.
T Consensus 32 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~~iPvV~ 91 (291)
T 3l49_A 32 ERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNL-----DVLNPWLQKINDAGIPLFT 91 (291)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCH-----HHHHHHHHHHHHTTCCEEE
T ss_pred HHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-----hhhHHHHHHHHHCCCcEEE
Confidence 34588888776543211113455666667888887764321 1234556667788887554
No 337
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=30.60 E-value=2.5e+02 Score=23.93 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=31.6
Q ss_pred CCHHHHHHHh------cCCceEEEEecccCccccc-ccHHHHHHHHHhcCcEEEEeccc
Q psy8850 124 ITLSQLEEKI------CSDTILVSVMLVNNEIGVI-QPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 124 ~d~~~l~~~i------~~~~~~v~~~~~~~~tG~~-~~l~~i~~l~~~~gi~livD~a~ 175 (397)
++.+++.+.+ -++.++++++.. .+.+.. .-+.++.+.++++|+++++|...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 172 (320)
T 3ie7_A 115 VSQTNKDNLLKQIAKKVKKEDMVVIAGS-PPPHYTLSDFKELLRTVKATGAFLGCDNSG 172 (320)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCEEEEESC-CCTTCCHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCCHHHHHHHHHHHHhcCCEEEEECCh
Confidence 4556655422 245678877543 232221 12567888889999999999753
No 338
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=30.54 E-value=79 Score=21.73 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.1
Q ss_pred hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (397)
Q Consensus 330 ~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 366 (397)
+.+.+.|+.+ +++.+||+++...++.++.+.++.+
T Consensus 82 YLi~~HGF~~--AGGL~~I~~P~E~SK~~V~~~i~~~ 116 (125)
T 3o2i_A 82 YLVTAHGFVE--AGGLQEIGFPGELSKTEVRRRINAF 116 (125)
T ss_dssp HHHHHHCCEE--ECCEEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHhhccccc--cCCeEEecCchhhhHHHHHHHHHHH
Confidence 4455666554 4589999999999999999888765
No 339
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=30.52 E-value=2.3e+02 Score=24.47 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCceEEEEecccCccccccc-HHHHHHHHHhcCcEEEEecc
Q psy8850 135 SDTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 135 ~~~~~v~~~~~~~~tG~~~~-l~~i~~l~~~~gi~livD~a 174 (397)
++.++++++.. .+.+...+ +.++.+.++++|+.+++|..
T Consensus 146 ~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 185 (330)
T 2jg1_A 146 EKVEAVAISGS-LPKGLNQDYYAQIIERCQNKGVPVILDCS 185 (330)
T ss_dssp GGCSEEEEESC-CCBTSCTTHHHHHHHHHHTTTCCEEEECC
T ss_pred CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCEEEEECC
Confidence 34567766532 22222122 56788889999999999975
No 340
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.03 E-value=93 Score=26.28 Aligned_cols=58 Identities=5% Similarity=0.025 Sum_probs=34.3
Q ss_pred CCcEEEEeccCCCC--CCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++.....+..+ .-..+.++.++..+..+|++.... + .......+.+++.|++++.
T Consensus 32 ~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-~----~~~~~~~~~~~~~giPvV~ 91 (297)
T 3rot_A 32 LKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPS-D----TAFSKSLQRANKLNIPVIA 91 (297)
T ss_dssp HTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCC-S----STTHHHHHHHHHHTCCEEE
T ss_pred hCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCC-H----HHHHHHHHHHHHCCCCEEE
Confidence 38888877644211 111345666667788888875432 1 1235566667788987654
No 341
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.91 E-value=1.7e+02 Score=24.42 Aligned_cols=69 Identities=7% Similarity=-0.098 Sum_probs=37.9
Q ss_pred ChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 96 HKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 96 ~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
|......++.. ...|.++.....+.+..-..+.++..+..+...+++...... + ...+.+++.|++++.
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~--~~~~~l~~~~iPvV~ 92 (287)
T 3bbl_A 23 LDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-----D--PRVQFLLKQKFPFVA 92 (287)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-----C--HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC-----c--HHHHHHHhcCCCEEE
Confidence 33444444433 345888876654433222355677777778888877643211 1 333445667886543
No 342
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=29.90 E-value=32 Score=33.12 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.7
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++-||++|+.||+|.+..
T Consensus 219 ~Gt~~df~~lv~~~H~~Gi~VilD~V~N 246 (588)
T 1j0h_A 219 FGDKETLKTLIDRCHEKGIRVMLDAVFN 246 (588)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 5777789999999999999999998754
No 343
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=29.88 E-value=3.2e+02 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHH
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
++||.|.+.-+..+.+..++-.+.+.|+..+.+. .. ...+.+...+.. ++++++........|...++..+.+
T Consensus 137 ~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~--~~--~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~ 210 (663)
T 1ry2_A 137 RKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF--AG--FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 210 (663)
T ss_dssp CTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECC--TT--SCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeC--CC--CCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHH
Confidence 6789998877766666655555555677665554 33 357888888765 7888887766555677777665543
No 344
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=29.66 E-value=31 Score=33.16 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=24.9
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|...+++++++-||++|+.||+|.+..
T Consensus 215 ~~Gt~~dfk~lv~~~H~~Gi~VilD~V~N 243 (585)
T 1wzl_A 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFN 243 (585)
T ss_dssp TTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 35777779999999999999999998754
No 345
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A
Probab=29.50 E-value=31 Score=33.34 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=25.3
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
..-|...+++++++-||++|+.||+|.+.
T Consensus 203 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~ 231 (599)
T 3bc9_A 203 TKYGTKGELENAIDALHNNDIKVYFDAVL 231 (599)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 34688888999999999999999999874
No 346
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=29.25 E-value=2.7e+02 Score=23.85 Aligned_cols=86 Identities=10% Similarity=-0.000 Sum_probs=43.7
Q ss_pred CEEEEcCCCChhhHHHHHH---HhhCCcEEEEeccCCCCCCCHHHHHHHhc---C--CceEEEEecccCcccccccHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRK---LENDGFRVTYLKPKNNGLITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~---~~~~g~~v~~v~~~~~~~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
-.|++... ..++..+++. +...|+.-..+-.......+-+.+.+..+ + ...+++...|. .||..++.+.+
T Consensus 82 vpViaGvg-~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~-~tg~~l~~~~~ 159 (301)
T 1xky_A 82 VPVIAGTG-SNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPG-RSIVQISVDTV 159 (301)
T ss_dssp SCEEEECC-CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHH-HHSSCCCHHHH
T ss_pred ceEEeCCC-CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCCCCHHHH
Confidence 34554433 2233344333 33346554443323223345555554332 2 23455444443 47888888999
Q ss_pred HHHHHhcCcEEEEecc
Q psy8850 159 GELCRSKGVIFHCDAA 174 (397)
Q Consensus 159 ~~l~~~~gi~livD~a 174 (397)
.++++--++.=|=|.+
T Consensus 160 ~~La~~pnIvgiKdss 175 (301)
T 1xky_A 160 VRLSEIENIVAIKDAG 175 (301)
T ss_dssp HHHHTSTTEEEEEECS
T ss_pred HHHHcCCCEEEEEcCC
Confidence 9998544666666655
No 347
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=29.21 E-value=71 Score=29.65 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=30.9
Q ss_pred HHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850 101 DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 101 ~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~ 173 (397)
..+..++..|++.+.+|+...+..+ .....-++++++.|+++|++||+|-
T Consensus 43 ~di~~ik~~G~N~VRipv~~g~~~~-----------------------~~~l~~ld~vv~~a~~~Gl~VIlDl 92 (464)
T 1wky_A 43 TAIEGIANTGANTVRIVLSDGGQWT-----------------------KDDIQTVRNLISLAEDNNLVAVLEV 92 (464)
T ss_dssp HHHHHHHTTTCSEEEEEECCSSSSC-----------------------CCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCCEEEEEcCCCCccC-----------------------HHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4555666668888888875211110 0122236777888888888888874
No 348
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=28.99 E-value=32 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.6
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|+..+++++++-||++|+.||+|.+..
T Consensus 74 ~~Gt~~df~~lv~~~h~~Gi~VilD~V~N 102 (558)
T 1uok_A 74 EFGTMEDWDELLHEMHERNMKLMMDLVVN 102 (558)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 36888889999999999999999998753
No 349
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=28.92 E-value=83 Score=21.01 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850 127 SQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 127 ~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~ 173 (397)
++..+++.+ +.++|++.+...| .-.+.+..+|++++++++.-.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~----~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP----ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH----HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH----HHHHHHHHHHHHcCCCEEEEC
Confidence 445555654 5677777765433 225678888999999887644
No 350
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=28.90 E-value=2.9e+02 Score=24.00 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=46.6
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEec-cCCCCCCCHHHHHHHhc---C-CceEEEEecccCcccccccHHHHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLK-PKNNGLITLSQLEEKIC---S-DTILVSVMLVNNEIGVIQPILEIGE 160 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~-~~~~~~~d~~~l~~~i~---~-~~~~v~~~~~~~~tG~~~~l~~i~~ 160 (397)
+..+++. |+++....+.+ |++...+. ..++..+.+.+|.+.++ + +.++|+++...++ +.+..
T Consensus 204 ~r~~v~~---H~af~Yfa~~y---GL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~ 270 (321)
T 1xvl_A 204 QRFLVSC---EGAFSYLARDY---GMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQKQ 270 (321)
T ss_dssp GCEEEEE---ESTTHHHHHHT---TCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHHH
T ss_pred CCEEEEE---CchHHHHHHHC---CCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCCh-------HHHHH
Confidence 4567775 44666666667 99877653 33445567777776653 3 6788888755433 34445
Q ss_pred HHHhcCcEEE
Q psy8850 161 LCRSKGVIFH 170 (397)
Q Consensus 161 l~~~~gi~li 170 (397)
++++.|+.+.
T Consensus 271 iA~e~g~~v~ 280 (321)
T 1xvl_A 271 VAQATGARFG 280 (321)
T ss_dssp HHTTTCCEEE
T ss_pred HHHhcCCcee
Confidence 6888998875
No 351
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=28.68 E-value=47 Score=31.62 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceEEEEecccCccccccc-HHHHHHHHHhcCcEEEEec
Q psy8850 126 LSQLEEKICSDTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 126 ~~~l~~~i~~~~~~v~~~~~~~~tG~~~~-l~~i~~l~~~~gi~livD~ 173 (397)
.+.+++++.....+|-+-..+.+...... .+++.++|++||+++|+++
T Consensus 28 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND 76 (540)
T 3nl6_A 28 YGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIIND 76 (540)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECS
T ss_pred HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeC
Confidence 46677777777777777666554444444 4678889999999888864
No 352
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=28.60 E-value=1.5e+02 Score=24.72 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred cEEEeCChhHHHHH-HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850 60 EIIWTSGATESNNL-AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC 134 (397)
Q Consensus 60 ~i~~~~g~t~a~~~-~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 134 (397)
.+++..|++.++=. +...|. +.|-.|++.+-.-.......+.+...|.++..+..|-. |.++++++++
T Consensus 8 KvalVTGas~GIG~aiA~~la----~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt---~~~~v~~~~~ 76 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFA----LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVS---KKKDVEEFVR 76 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---SHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC---CHHHHHHHHH
Confidence 35555555555433 333444 56677766555444444455555555777777776622 4555555543
No 353
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=28.57 E-value=34 Score=33.67 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.6
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
++..-|...+++++++-||++|+.||+|.+.
T Consensus 108 idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~ 138 (686)
T 1d3c_A 108 TNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138 (686)
T ss_dssp ECTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 4445688888999999999999999999874
No 354
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=28.52 E-value=32 Score=32.73 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=25.2
Q ss_pred cccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
.-|...+++++++-||++|+.||+|.+.
T Consensus 74 ~~Gt~~df~~lv~~~h~~Gi~VilD~V~ 101 (543)
T 2zic_A 74 IFGNMADMDNLLTQAKMRGIKIIMDLVV 101 (543)
T ss_dssp GGCCHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 4688888999999999999999999874
No 355
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=28.40 E-value=33 Score=33.45 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=24.7
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|+..+++++++-||++|+.||+|.+..
T Consensus 281 ~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 309 (645)
T 4aef_A 281 RLGGDRAFVDLLSELKRFDIKVILDGVFH 309 (645)
T ss_dssp GGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHhhhcCCEEEEEeccc
Confidence 35777778999999999999999998743
No 356
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=28.40 E-value=35 Score=32.94 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=25.0
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|...+++++++-||++|+.||+|.+..
T Consensus 194 ~~Gt~~df~~Lv~~aH~~Gi~VilD~V~N 222 (601)
T 3edf_A 194 RYGSNEDFVRLSTEARKRGMGLIQDVVLS 222 (601)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 35777789999999999999999998853
No 357
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=28.26 E-value=33 Score=32.73 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=42.7
Q ss_pred CChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850 95 EHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 95 ~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~ 173 (397)
.+.+....+..++..|++.+++..- +...-+ -.=.+.-.+ .++..-|...+++++++.||++|+.||+|.
T Consensus 29 d~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~-------~gY~~~dy~--~id~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 99 (555)
T 2ze0_A 29 DLRGIIEKLDYLVELGVDIVWICPIYRSPNAD-------NGYDISDYY--AIMDEFGTMDDFDELLAQAHRRGLKVILDL 99 (555)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCCTT-------TTCSCSEEE--EECGGGCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCC-------CCcCccccc--ccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3444444555555668887776331 111000 000122111 133346888889999999999999999998
Q ss_pred ccc
Q psy8850 174 AQA 176 (397)
Q Consensus 174 a~~ 176 (397)
+..
T Consensus 100 V~N 102 (555)
T 2ze0_A 100 VIN 102 (555)
T ss_dssp ECS
T ss_pred ecc
Confidence 753
No 358
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=28.15 E-value=35 Score=33.61 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=44.4
Q ss_pred ChhhHHHHHHHhhCCcEEEEeccC-C--CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEe
Q psy8850 96 HKSVLDSIRKLENDGFRVTYLKPK-N--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 96 ~~s~~~~~~~~~~~g~~v~~v~~~-~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD 172 (397)
+.+...-+..++..|++.+++..- + .+..|. -..-...-...-+..++..-|...+++++++-||++|+.||+|
T Consensus 51 l~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~~~~~---g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD 127 (686)
T 1qho_A 51 LEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGT---DNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVD 127 (686)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEEECSSCSST---TCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhhHHHHhcCCCEEEECccccCCcccccC---CCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344444455555668888777432 1 111110 0000001122222234445788889999999999999999999
Q ss_pred cccc
Q psy8850 173 AAQA 176 (397)
Q Consensus 173 ~a~~ 176 (397)
.+..
T Consensus 128 ~V~N 131 (686)
T 1qho_A 128 FVPN 131 (686)
T ss_dssp ECTT
T ss_pred eccc
Confidence 8743
No 359
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=27.97 E-value=36 Score=33.52 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=26.5
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
++..-|...+++++++-||++|+.||+|.+.
T Consensus 109 idp~~Gt~~dfk~Lv~~aH~~GikVilD~V~ 139 (683)
T 3bmv_A 109 TNPYFGSFTDFQNLINTAHAHNIKVIIDFAP 139 (683)
T ss_dssp ECTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4444688888999999999999999999874
No 360
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=27.76 E-value=31 Score=33.17 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.1
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++-||++|+.||+|.+..
T Consensus 215 ~Gt~~df~~lv~~~H~~Gi~VilD~V~N 242 (583)
T 1ea9_C 215 FGDKDTLKKLVDLCHERGIRVLLDAVFN 242 (583)
T ss_dssp TCCHHHHHHHHHHHTTTTCEEEEECCCS
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 4666778999999999999999998854
No 361
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=27.62 E-value=36 Score=33.46 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=26.5
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
++..-|...+++++++-||++|+.||+|.+.
T Consensus 104 idp~~Gt~~df~~Lv~~aH~~GIkVilD~V~ 134 (680)
T 1cyg_A 104 PNPFFGTLSDFQRLVDAAHAKGIKVIIDFAP 134 (680)
T ss_dssp ECTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444688889999999999999999999874
No 362
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=27.60 E-value=1.2e+02 Score=25.86 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=33.7
Q ss_pred CCcEEEEe-ccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYL-KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v-~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++... +.+.+-.-..+.++.++.++..++++...... .+....+.+++.|+++|.
T Consensus 32 ~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~-----~~~~~~~~a~~~gipvV~ 90 (316)
T 1tjy_A 32 LGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD-----GLCPALKRAMQRGVKILT 90 (316)
T ss_dssp HTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS-----TTHHHHHHHHHTTCEEEE
T ss_pred hCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH-----HHHHHHHHHHHCcCEEEE
Confidence 38777654 22211111134567777788888877643211 234556667888998765
No 363
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=27.58 E-value=1.3e+02 Score=25.71 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=44.2
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEec-cCCCCCCCHHHHHHHh---c-CCceEEEEecccCcccccccHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK-PKNNGLITLSQLEEKI---C-SDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~-~~~~~~~d~~~l~~~i---~-~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++..+++..+ ++....+.+ |++...+. +..+..+.+.+|.+++ + .+.++|+++...++ +.+.
T Consensus 176 ~~~~~v~~H~---af~Yf~~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~ 242 (284)
T 3cx3_A 176 TQKTFVTQHT---AFSYLAKRF---GLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASS-------KVAE 242 (284)
T ss_dssp SCCCEEEEES---CCHHHHHHT---TCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCC-------HHHH
T ss_pred CCCEEEEECC---chHHHHHHc---CCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHHH
Confidence 4566777544 555556666 88877654 3334445666666554 3 36788877754332 3345
Q ss_pred HHHHhcCcEEE
Q psy8850 160 ELCRSKGVIFH 170 (397)
Q Consensus 160 ~l~~~~gi~li 170 (397)
.++++.|+.++
T Consensus 243 ~ia~~~g~~v~ 253 (284)
T 3cx3_A 243 TLVKSTGVGLK 253 (284)
T ss_dssp HHHSSSSCCEE
T ss_pred HHHHHcCCeEE
Confidence 56888888664
No 364
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=27.56 E-value=1.5e+02 Score=21.25 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=36.8
Q ss_pred EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC 134 (397)
Q Consensus 89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 134 (397)
.++..+..+.+..+...+...|+.+..+++..+. ++.++|.+.+.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~-~~~~el~~~l~ 47 (120)
T 3l78_A 3 TLFLSPSCTSCRKARAWLNRHDVVFQEHNIMTSP-LSRDELLKILS 47 (120)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEEEETTTSC-CCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC-CcHHHHHHHHh
Confidence 4667788889999999998889999999887654 57888888775
No 365
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=27.35 E-value=2.8e+02 Score=23.45 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=40.2
Q ss_pred EEEeCChhHHHH-HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----
Q psy8850 61 IIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---- 135 (397)
Q Consensus 61 i~~~~g~t~a~~-~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---- 135 (397)
+++| |++.++= .++..|. +.|..|++..-.-.........+...+.++..+.+|-. |.+.+++++.+
T Consensus 34 vlVT-Gas~gIG~~la~~l~----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 34 AVVT-GGASGIGLATATEFA----RRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVR---HLDEMVRLADEAFRL 105 (301)
T ss_dssp EEEE-TTTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred EEEe-CCCCHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCC---CHHHHHHHHHHHHHh
Confidence 4554 4444433 3344444 56777766554444444444444444667777776632 55666655542
Q ss_pred --CceEEEEecc
Q psy8850 136 --DTILVSVMLV 145 (397)
Q Consensus 136 --~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 106 ~g~id~lvnnAg 117 (301)
T 3tjr_A 106 LGGVDVVFSNAG 117 (301)
T ss_dssp HSSCSEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 4556555443
No 366
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=27.28 E-value=2.1e+02 Score=22.01 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=25.2
Q ss_pred HHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 131 EKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 131 ~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
..++++..+|+++. .|....+-++++.+|+.|+.+|.
T Consensus 106 ~~~~~~Dvvi~iS~----sG~t~~~~~~~~~ak~~g~~vi~ 142 (188)
T 1tk9_A 106 ALGNEKDVLIGIST----SGKSPNVLEALKKAKELNMLCLG 142 (188)
T ss_dssp HHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HhCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCEEEE
Confidence 34556666666654 46666677888889999876643
No 367
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=27.26 E-value=97 Score=23.57 Aligned_cols=54 Identities=20% Similarity=0.092 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhcC-CceEEEEecccCccccccc-H---HHHH-HHHHhcCcE-EEEecccc
Q psy8850 123 LITLSQLEEKICS-DTILVSVMLVNNEIGVIQP-I---LEIG-ELCRSKGVI-FHCDAAQA 176 (397)
Q Consensus 123 ~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~-l---~~i~-~l~~~~gi~-livD~a~~ 176 (397)
.-+.+.|.+.+.+ ++..+++..|-|..|..-+ . +..+ .++++.+++ ..+|+.++
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 3478899998887 6888899988888777654 2 2333 444556775 56788876
No 368
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=27.23 E-value=1.6e+02 Score=24.27 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=30.9
Q ss_pred CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE-Ee
Q psy8850 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH-CD 172 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li-vD 172 (397)
.|.++.....+.+..-..+.++..+..+...+++.... + .......+.+++.|++++ +|
T Consensus 30 ~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~----~~~~~~~~~~~~~~iPvV~i~ 89 (271)
T 2dri_A 30 LGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD-S----DAVGNAVKMANQANIPVITLD 89 (271)
T ss_dssp HTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSS-T----TTTHHHHHHHHHTTCCEEEES
T ss_pred cCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-h----HHHHHHHHHHHHCCCcEEEec
Confidence 38887765543211111233555666778888775322 1 122334455667788654 44
No 369
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=27.13 E-value=74 Score=29.97 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 100 LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 100 ~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
...++.++..|++.+.+|+.....++ +... ..-++ ..+.-++++++.|+++|+.+|+|--+.
T Consensus 48 ~~di~~i~~~G~N~vRipi~w~~~~~---------~~~~-----~~~~~-~~l~~~d~vv~~a~~~Gi~vildlH~~ 109 (515)
T 3icg_A 48 HAMINKIKEAGFNTLRLPVTWDGHMG---------AAPE-----YTIDQ-TWMKRVEEIANYAFDNDMYVIINLHHE 109 (515)
T ss_dssp HHHHHHHHHHTCCEEEECCCCTTSBC---------CTTT-----CCBCH-HHHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred HHHHHHHHHCCCCEEEEccchHHhCC---------CCCC-----CccCH-HHHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 34455555559999999887322111 0000 00011 112336889999999999999996543
No 370
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.11 E-value=1.4e+02 Score=24.92 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|..+.....+.+..-..+.++..+..+...+++.... + .......+.+++.|++++.
T Consensus 30 ~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~----~~~~~~~~~~~~~~iPvV~ 87 (283)
T 2ioy_A 30 LGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVD-S----DAVVTAIKEANSKNIPVIT 87 (283)
T ss_dssp HTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-T----TTTHHHHHHHHHTTCCEEE
T ss_pred cCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCc-h----hhhHHHHHHHHHCCCeEEE
Confidence 38887766543211111334566666788888775321 1 1223344556778887654
No 371
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=26.98 E-value=73 Score=28.62 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=36.5
Q ss_pred hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc-----ccHHHHHHHHHhcCcEEEEec
Q psy8850 99 VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-----QPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 99 ~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-----~~l~~i~~l~~~~gi~livD~ 173 (397)
....++.++..|++.+.+|+.....+. + .+.|.+ .-++++++.|+++|+.+|+|-
T Consensus 71 ~~~d~~~l~~~G~n~vRl~i~w~~~~~---------~-----------~~~~~~~~~~l~~~d~~v~~a~~~Gi~vild~ 130 (395)
T 2jep_A 71 TPELIKKVKAAGFKSIRIPVSYLNNIG---------S-----------APNYTINAAWLNRIQQVVDYAYNEGLYVIINI 130 (395)
T ss_dssp CHHHHHHHHHTTCCEEEECCCCGGGBC---------C-----------TTTCCBCHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred cHHHHHHHHHcCCCEEEEeeeeccccC---------C-----------CCCCccCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 344555566668888888875321111 0 112222 237889999999999999996
Q ss_pred ccc
Q psy8850 174 AQA 176 (397)
Q Consensus 174 a~~ 176 (397)
-+.
T Consensus 131 h~~ 133 (395)
T 2jep_A 131 HGD 133 (395)
T ss_dssp CGG
T ss_pred CCc
Confidence 654
No 372
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=26.88 E-value=39 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.5
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|...+++++++-||++|+.||+|.+..
T Consensus 83 ~~Gt~~df~~lv~~~h~~Gi~VilD~V~N 111 (589)
T 3aj7_A 83 TYGTNEDCFALIEKTHKLGMKFITDLVIN 111 (589)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 46888889999999999999999998743
No 373
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=32.77 E-value=14 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCcEEEEeccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~ 175 (397)
-++|.++|+++|++++.|..-
T Consensus 29 A~~I~e~A~e~~VPi~e~~~L 49 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPEL 49 (87)
Confidence 468999999999999999653
No 374
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=26.67 E-value=31 Score=33.01 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.7
Q ss_pred ccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 145 VNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 145 ~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
++..-|...+++++++-||++|+.||+|-+..
T Consensus 160 ~~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 191 (558)
T 3vgf_A 160 VQNSYGGPEGFRKLVDEAHKKGLGVILDVVYN 191 (558)
T ss_dssp ECGGGTHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cccccCCHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 34456788889999999999999999998753
No 375
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=26.61 E-value=52 Score=26.78 Aligned_cols=62 Identities=8% Similarity=-0.088 Sum_probs=34.2
Q ss_pred CcEEEEeccCCCCCCC--HHHHHHHhcCCceEEEEeccc---Ccccc----cccHHHHHHHHHhcCcEEEEe
Q psy8850 110 GFRVTYLKPKNNGLIT--LSQLEEKICSDTILVSVMLVN---NEIGV----IQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 110 g~~v~~v~~~~~~~~d--~~~l~~~i~~~~~~v~~~~~~---~~tG~----~~~l~~i~~l~~~~gi~livD 172 (397)
.+.+..-|-+.....| ...++.+.+.+ .++=+...+ .+.|. +.+...+.++|+++|+++++.
T Consensus 96 ~vDII~Hp~~~~~~~~~~~~~a~~A~e~g-v~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivis 166 (212)
T 1v77_A 96 GVDAIISPWVNRKDPGIDHVLAKLMVKKN-VALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLT 166 (212)
T ss_dssp TCSEEECTTTTSSSCSCCHHHHHHHHHHT-CEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEecccccccCCCCCHHHHHHHHHCC-eEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 6666666655422333 33333333344 333332211 12232 456678999999999988887
No 376
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=26.45 E-value=2.7e+02 Score=23.51 Aligned_cols=83 Identities=10% Similarity=0.026 Sum_probs=41.9
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccc----cHHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ----PILEIGELC 162 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~----~l~~i~~l~ 162 (397)
|-|++++............+...|.....+-.+. .+.+.++.....-..+|++.+....||... ++.++.+-+
T Consensus 125 dgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~---t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~v 201 (267)
T 3vnd_A 125 DSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPN---ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQL 201 (267)
T ss_dssp CEEEETTSCGGGCHHHHHHHHHTTCEEECEECTT---CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHH
T ss_pred CEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHH
Confidence 6677777666555555555556677655332221 134555555444444565554555566542 244444444
Q ss_pred Hhc-CcEEEEe
Q psy8850 163 RSK-GVIFHCD 172 (397)
Q Consensus 163 ~~~-gi~livD 172 (397)
|++ +++++++
T Consensus 202 r~~~~~pv~vG 212 (267)
T 3vnd_A 202 AEFNAPPPLLG 212 (267)
T ss_dssp HTTTCCCEEEC
T ss_pred HHhcCCCEEEE
Confidence 544 5666664
No 377
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=26.41 E-value=2.9e+02 Score=23.27 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCHHHHHHH---hc--CCceEEEEecccCccccccc-HHHHHHHHHhcCcEEEEecc
Q psy8850 124 ITLSQLEEK---IC--SDTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 124 ~d~~~l~~~---i~--~~~~~v~~~~~~~~tG~~~~-l~~i~~l~~~~gi~livD~a 174 (397)
++.+++... +. ++.++++++.. .+.+...+ +.++.+.++++|+++++|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 163 (306)
T 2jg5_A 108 ITSTQFEQLLQQIKNTTSEDIVIVAGS-VPSSIPSDAYAQIAQITAQTGAKLVVDAE 163 (306)
T ss_dssp CCHHHHHHHHHHHTTCCTTCEEEEESC-CCTTSCTTHHHHHHHHHHHHCCEEEEECC
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCC-CCCCCChHHHHHHHHHHHHCCCEEEEECC
Confidence 556665543 21 34566666532 22222112 56788889999999999964
No 378
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=26.41 E-value=97 Score=26.44 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCC--ChhhHHHHHHHhhCCcEEEEec
Q psy8850 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE--HKSVLDSIRKLENDGFRVTYLK 117 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~g~~v~~v~ 117 (397)
.+.+..+++. ++-+|.+ ++.+.=....+..+... . +.+-+.... ...+...+... | +++.+.
T Consensus 88 ~~gl~~l~~~-~~~~Gl~---~~te~~d~~~~~~l~~~-v-------d~~kIgs~~~~n~~ll~~~a~~---~-kPV~lk 151 (276)
T 1vs1_A 88 LEGLKLLRRA-GDEAGLP---VVTEVLDPRHVETVSRY-A-------DMLQIGARNMQNFPLLREVGRS---G-KPVLLK 151 (276)
T ss_dssp HHHHHHHHHH-HHHHTCC---EEEECCCGGGHHHHHHH-C-------SEEEECGGGTTCHHHHHHHHHH---T-CCEEEE
T ss_pred HHHHHHHHHH-HHHcCCc---EEEecCCHHHHHHHHHh-C-------CeEEECcccccCHHHHHHHHcc---C-CeEEEc
Confidence 4455555444 6677877 55555555555655553 3 233333222 22233333322 4 333343
Q ss_pred cCCCCCCCHHHHHHHhc-----CCceEEEEe-cc-cCcc--cccccHHHHHHHHHhcCcEEEEecccccCc
Q psy8850 118 PKNNGLITLSQLEEKIC-----SDTILVSVM-LV-NNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGK 179 (397)
Q Consensus 118 ~~~~~~~d~~~l~~~i~-----~~~~~v~~~-~~-~~~t--G~~~~l~~i~~l~~~~gi~livD~a~~~~~ 179 (397)
... ..++++++.+++ -+..++++. .. ++|+ -...++..+..+.+..+++|++|..|+.|.
T Consensus 152 ~G~--~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g~ 220 (276)
T 1vs1_A 152 RGF--GNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAGR 220 (276)
T ss_dssp CCT--TCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHCS
T ss_pred CCC--CCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCCc
Confidence 321 137788877764 245566555 33 2233 234557778887777899999999999775
No 379
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=26.35 E-value=1.7e+02 Score=24.93 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=44.2
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe-ccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHH
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYL-KPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIG 159 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v-~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~ 159 (397)
++..+++..+ ++....+.+ |++...+ .+.++..+.+.+|.+.++ .+.++|+++...++ +.+.
T Consensus 173 ~~~~~v~~H~---af~Yf~~~y---Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~ 239 (284)
T 2prs_A 173 KGKGYFVFHD---AYGYFEKQF---GLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRP-------AVVE 239 (284)
T ss_dssp TTCCEEEEES---CCHHHHHHH---TCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCS-------HHHH
T ss_pred CCCeEEEECc---cHHHHHHHC---CCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHH
Confidence 4566777544 555556777 7765544 233444566776666553 36788877754322 3344
Q ss_pred HHHHhcCcEEEE
Q psy8850 160 ELCRSKGVIFHC 171 (397)
Q Consensus 160 ~l~~~~gi~liv 171 (397)
.++++.|+.++.
T Consensus 240 ~ia~~~g~~v~~ 251 (284)
T 2prs_A 240 SVARGTSVRMGT 251 (284)
T ss_dssp HHTTTSCCEEEE
T ss_pred HHHHHcCCeEEE
Confidence 557888887653
No 380
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=26.26 E-value=3e+02 Score=23.41 Aligned_cols=86 Identities=12% Similarity=-0.002 Sum_probs=43.8
Q ss_pred CEEEEcCCCChhhHHHHHHH---hhCCcEEEEeccCCCCCCCHHHHHHHhc---C--CceEEEEecccCcccccccHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKPKNNGLITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~---~~~g~~v~~v~~~~~~~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
-.|++... ..++..+++.. ...|+.-..+-....+..+-+.+.+..+ + ...+++...|. .||..++.+.+
T Consensus 72 vpviaGvg-~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~-~tg~~l~~~~~ 149 (292)
T 3daq_A 72 VPVIAGTG-TNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPS-RTNMTIEPETV 149 (292)
T ss_dssp SCEEEECC-CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHH-HHSCCCCHHHH
T ss_pred CcEEEeCC-cccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeccc-ccCCCCCHHHH
Confidence 44554432 33444444433 2236544433222223344455444332 1 33455444332 37888999999
Q ss_pred HHHHHhcCcEEEEecc
Q psy8850 159 GELCRSKGVIFHCDAA 174 (397)
Q Consensus 159 ~~l~~~~gi~livD~a 174 (397)
.++++--++.=|=|..
T Consensus 150 ~~La~~pnivgiK~ss 165 (292)
T 3daq_A 150 EILSQHPYIVALKDAT 165 (292)
T ss_dssp HHHHTSTTEEEEEECC
T ss_pred HHHhcCCCEEEEEeCC
Confidence 9998744666666644
No 381
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=26.07 E-value=40 Score=32.63 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=25.5
Q ss_pred CcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..-|...+++++++-||++|+.||+|-++.
T Consensus 187 ~~~Gt~~d~~~lv~~~H~~Gi~VilD~V~N 216 (602)
T 2bhu_A 187 APYGRPEDLMALVDAAHRLGLGVFLDVVYN 216 (602)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 345778889999999999999999998754
No 382
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=25.83 E-value=1.4e+02 Score=26.05 Aligned_cols=104 Identities=11% Similarity=0.077 Sum_probs=52.4
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceE-EEEecccCccccc--ccHHHHHHHHHhcCcEEEEecccccCccccccCcc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTIL-VSVMLVNNEIGVI--QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY 187 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~-v~~~~~~~~tG~~--~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~ 187 (397)
.++.+...++ +-...|++++..+..+ .+++.+..|.|.- .....+.++|+++|++++.-.........-.+..+
T Consensus 3 mrivf~Gtp~---fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~ 79 (314)
T 3tqq_A 3 LKIVFAGTPQ---FAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQEKLIAM 79 (314)
T ss_dssp CEEEEEECSG---GGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHHHHHHTT
T ss_pred cEEEEECCCH---HHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHHHHHHhc
Confidence 4566665442 3456677777665443 4677777777632 22345777899999997632211100111123445
Q ss_pred cccEEEe-cccccc-----CCCCceEEEEecCCCCc
Q psy8850 188 KVDLMSF-SAHKIY-----GPKGIGALYIRRNPRTR 217 (397)
Q Consensus 188 ~~d~~~~-s~~K~~-----g~~g~g~~~~~~~~~~~ 217 (397)
.+|+++. ++.++. .....|++-+.+.++..
T Consensus 80 ~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~ 115 (314)
T 3tqq_A 80 NADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPR 115 (314)
T ss_dssp CCSEEEEESCCSCCCHHHHTSSTTCEEEEESSCTTT
T ss_pred CCCEEEEcCcccccCHHHHhhCcCCEEEecCccccC
Confidence 7887655 444432 22235777777665544
No 383
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=25.83 E-value=2.5e+02 Score=23.45 Aligned_cols=82 Identities=10% Similarity=0.040 Sum_probs=48.8
Q ss_pred CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc----HHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP----ILEIGELC 162 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~----l~~i~~l~ 162 (397)
|-+++++.-+.........+.+.|+.++.+-... .+.+.+++.......++++.+....||...+ +.++.+-.
T Consensus 118 dG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~---t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~v 194 (252)
T 3tha_A 118 CALIVPELSFEESDDLIKECERYNIALITLVSVT---TPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEI 194 (252)
T ss_dssp EEEECTTCCGGGCHHHHHHHHHTTCEECEEEETT---SCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCC---CcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHH
Confidence 7788888776665555555666688766532221 1356666555554456666655556887644 34455555
Q ss_pred Hhc-CcEEEE
Q psy8850 163 RSK-GVIFHC 171 (397)
Q Consensus 163 ~~~-gi~liv 171 (397)
|++ ++++++
T Consensus 195 r~~~~~Pv~v 204 (252)
T 3tha_A 195 RSFTNLPIFV 204 (252)
T ss_dssp HTTCCSCEEE
T ss_pred HHhcCCcEEE
Confidence 555 667766
No 384
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=25.58 E-value=2.5e+02 Score=24.62 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=22.3
Q ss_pred CceEEEEecccCccc------cc--------cc-------HHHHHHHHHhcCcEEEE
Q psy8850 136 DTILVSVMLVNNEIG------VI--------QP-------ILEIGELCRSKGVIFHC 171 (397)
Q Consensus 136 ~~~~v~~~~~~~~tG------~~--------~~-------l~~i~~l~~~~gi~liv 171 (397)
++++|++.++++..- .. .- +..|..+++++|+.+++
T Consensus 111 ~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 111 EKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp CCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 688999998876531 10 00 23456678889987543
No 385
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=25.44 E-value=3e+02 Score=23.00 Aligned_cols=84 Identities=7% Similarity=0.006 Sum_probs=41.9
Q ss_pred hCCCCCcEEEeCChhHHHH-HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHH
Q psy8850 54 IYADPREIIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEK 132 (397)
Q Consensus 54 ~~~~~~~i~~~~g~t~a~~-~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~ 132 (397)
+....-.+++|. ++.++= .+...|. +.|..|++..-.-.......+.+...+.++..+.+|-. |.+++++.
T Consensus 28 ~~l~gk~~lVTG-as~GIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~---d~~~v~~~ 99 (276)
T 3r1i_A 28 FDLSGKRALITG-ASTGIGKKVALAYA----EAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVT---QPDQVRGM 99 (276)
T ss_dssp GCCTTCEEEEES-TTSHHHHHHHHHHH----HTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTT---CHHHHHHH
T ss_pred cCCCCCEEEEeC-CCCHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC---CHHHHHHH
Confidence 444422345544 444433 3344444 56767766554444444444445444556666666522 55666655
Q ss_pred hcC------CceEEEEecc
Q psy8850 133 ICS------DTILVSVMLV 145 (397)
Q Consensus 133 i~~------~~~~v~~~~~ 145 (397)
+.+ +..+++....
T Consensus 100 ~~~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 100 LDQMTGELGGIDIAVCNAG 118 (276)
T ss_dssp HHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 542 4555554433
No 386
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=25.25 E-value=3.5e+02 Score=23.83 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCChhhHH---HHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEe-cccCccccccc---HHH
Q psy8850 85 RGKHIITVQTEHKSVLD---SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVM-LVNNEIGVIQP---ILE 157 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~---~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~-~~~~~tG~~~~---l~~ 157 (397)
+..+|++.+ +.|.+.. ....+...|+.++.++-+ -...+.+ ..+...|++- .--...|.+.. --.
T Consensus 181 k~~~V~v~E-tRP~~qG~rlta~eL~~~GI~vtlI~Ds-----a~~~~M~--~~~Vd~VivGAd~V~aNG~v~NKiGT~~ 252 (347)
T 1t9k_A 181 KRIRVFADE-TRPYLQGARLTAWELMKDGIEVYVITDN-----MAGWLMK--RGLIDAVVVGADRIALNGDTANKIGTYS 252 (347)
T ss_dssp CCEEEEEEC-CTTTTHHHHTHHHHHHTTTCEEEEECGG-----GHHHHHH--TTCCSEEEECCSEEETTSCEEEETTHHH
T ss_pred CeEEEEEeC-CCCccccHHHHHHHHHhCCCCEEEEehh-----HHHHHhh--cCCCCEEEECccEEecCCCEEecccHHH
Confidence 446677765 2344433 234455669999988733 1222222 1234444332 22223454443 356
Q ss_pred HHHHHHhcCcEEEEecc
Q psy8850 158 IGELCRSKGVIFHCDAA 174 (397)
Q Consensus 158 i~~l~~~~gi~livD~a 174 (397)
++-+||.||++++|=+-
T Consensus 253 lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 253 LAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHHHHTTCCEEEECC
T ss_pred HHHHHHHcCCCEEEecc
Confidence 78889999999988653
No 387
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Probab=25.25 E-value=37 Score=33.10 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHhcCcEEEEecccc
Q psy8850 152 IQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 152 ~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..+++++++-||++|+.||+|-++.
T Consensus 181 ~~~~~~lv~~~H~~Gi~VilD~V~n 205 (637)
T 1gjw_A 181 DEEFKAFVEACHILGIRVILDFIPR 205 (637)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcC
Confidence 5778999999999999999998754
No 388
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=25.19 E-value=1.6e+02 Score=21.76 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhc---CcEEEEec
Q psy8850 105 KLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSK---GVIFHCDA 173 (397)
Q Consensus 105 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~---gi~livD~ 173 (397)
.+...|+++..+..+ ..++++.+++. .++.+|.++...++ ....++++.+..++. ++.+++=.
T Consensus 26 ~l~~~G~~Vi~lG~~----~p~e~~v~~a~~~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 26 AFTNAGFNVVNIGVL----SPQELFIKAAIETKADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHTTCEEEEEEEE----ECHHHHHHHHHHHTCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHCCCEEEECCCC----CCHHHHHHHHHhcCCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 344559999977654 46777766654 57888888766432 222356666666665 35555543
No 389
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=25.11 E-value=76 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 127 SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 127 ~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
+.+++++....+.+++.. |. .-+++.+.|+++|+.++-+.+.+
T Consensus 92 ~vv~~~~~~gi~~i~~~~-----g~--~~~~l~~~a~~~Gi~vvGpnc~g 134 (144)
T 2d59_A 92 EYVEQAIKKGAKVVWFQY-----NT--YNREASKKADEAGLIIVANRCMM 134 (144)
T ss_dssp HHHHHHHHHTCSEEEECT-----TC--CCHHHHHHHHHTTCEEEESCCHH
T ss_pred HHHHHHHHcCCCEEEECC-----Cc--hHHHHHHHHHHcCCEEEcCCchh
Confidence 334455555666665542 33 26889999999999998887755
No 390
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=25.04 E-value=35 Score=34.65 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=22.9
Q ss_pred cccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 150 GVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 150 G~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
|.+.+++++++-||++|+.||+|-++.
T Consensus 367 ~~~~efk~lV~~~H~~GI~VILDvV~N 393 (877)
T 3faw_A 367 ARIAELKQLIHDIHKRGMGVILDVVYN 393 (877)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 345678999999999999999998863
No 391
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.82 E-value=80 Score=26.53 Aligned_cols=58 Identities=5% Similarity=-0.084 Sum_probs=33.7
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.+.|.++.....+.+..-..+.++.++..+...|++..... .....+.+++.|++++.
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-------~~~~~~~~~~~~iPvV~ 92 (291)
T 3egc_A 35 RHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-------EHDYLRTELPKTFPIVA 92 (291)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-------CCHHHHHSSCTTSCEEE
T ss_pred HHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-------ChHHHHHhhccCCCEEE
Confidence 34588888776553221113345555667888887754421 23455567778887653
No 392
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=24.81 E-value=1.3e+02 Score=25.34 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCcEEEEe-ccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYL-KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v-~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++..+ ..+.+..--.+.++.++..+..+|++...... ......+.+++.|++++.
T Consensus 33 ~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~~iPvV~ 91 (305)
T 3g1w_A 33 LNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-----ELTDTINKAVDAGIPIVL 91 (305)
T ss_dssp HTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT-----TTHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH-----HHHHHHHHHHHCCCcEEE
Confidence 38888764 32221111123455566678888887543211 234555667778887654
No 393
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=24.80 E-value=4.4e+02 Score=25.19 Aligned_cols=63 Identities=8% Similarity=0.162 Sum_probs=42.0
Q ss_pred HhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcC--cEEEEecc
Q psy8850 106 LENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAA 174 (397)
Q Consensus 106 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g--i~livD~a 174 (397)
+...|.+++.+..+ +.++++.+++. .++.+|.++... +.....++++++..++.| ++|++=++
T Consensus 122 L~~~G~eVi~LG~~----vP~e~iv~aa~~~~~diVgLS~l~--t~~~~~m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 122 LQCNNYEIVDLGVM----VPAEKILRTAKEVNADLIGLSGLI--TPSLDEMVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHTTTCEEEECCSS----BCHHHHHHHHHHHTCSEEEEECCS--THHHHHHHHHHHHHHHTTCCSCEEEEST
T ss_pred HHHCCCEEEECCCC----CCHHHHHHHHHHcCCCEEEEEecC--CCCHHHHHHHHHHHHHcCCCCeEEEEcc
Confidence 44559999888765 56778776665 588899888654 334445677777677665 66665443
No 394
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=24.67 E-value=42 Score=33.10 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=24.8
Q ss_pred cccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
.-|...+++++++-||++|+.||+|.+..
T Consensus 307 ~~Gt~~df~~Lv~~aH~~GikVilD~V~N 335 (696)
T 4aee_A 307 YLGTMEDFEKLVQVLHSRKIKIVLDITMH 335 (696)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEecccc
Confidence 35777778999999999999999998743
No 395
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=24.65 E-value=1.9e+02 Score=26.59 Aligned_cols=82 Identities=7% Similarity=0.060 Sum_probs=57.5
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhC-CcEEEEeccCCCCCCCHHHHHHHhcCCc-eEEEEecccCcccccccHHHHHHHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNGLITLSQLEEKICSDT-ILVSVMLVNNEIGVIQPILEIGELCR 163 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~~~~~~~~d~~~l~~~i~~~~-~~v~~~~~~~~tG~~~~l~~i~~l~~ 163 (397)
=+.+.+-+|-.+.....+..+... .+.+ --++....+++++++.+..+. .+|.+.. |-.|.+-...+++++|+
T Consensus 289 y~i~~iEdPl~~dD~~g~~~l~~~~~ipI---~gDE~~vt~~~~~~~~i~~~a~d~i~ikv--~qiGGitea~~ia~lA~ 363 (436)
T 2al1_A 289 YPIVSIEDPFAEDDWEAWSHFFKTAGIQI---VADDLTVTNPKRIATAIEKKAADALLLKV--NQIGTLSESIKAAQDSF 363 (436)
T ss_dssp SCEEEEECCSCTTCHHHHHHHHTTCCSEE---EESTTTTTCHHHHHHHHHTTCCSEEEECH--HHHCCHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCcCHHHHHHHHhcCCCeE---EECCcccCCHHHHHHHHHhCCCCEEEech--hhcCCHHHHHHHHHHHH
Confidence 357888899888888888877554 2222 123333347899999998764 4554432 33688888899999999
Q ss_pred hcCcEEEEe
Q psy8850 164 SKGVIFHCD 172 (397)
Q Consensus 164 ~~gi~livD 172 (397)
++|+.+++=
T Consensus 364 ~~g~~~~~s 372 (436)
T 2al1_A 364 AAGWGVMVS 372 (436)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEe
Confidence 999987663
No 396
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=24.61 E-value=34 Score=35.43 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=22.5
Q ss_pred ccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 151 VIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 151 ~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
...+++++++.||++||.||+|-++.
T Consensus 560 ~~~efk~lV~~~H~~GI~VIlDvV~N 585 (1014)
T 2ya1_A 560 RIAEFKNLINEIHKRGMGAILDVVYN 585 (1014)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred hHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 35668899999999999999998864
No 397
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=24.59 E-value=43 Score=32.45 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=24.1
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++-||++|+.||+|-++.
T Consensus 201 ~Gt~~~~~~lv~~~H~~Gi~VilD~V~N 228 (617)
T 1m7x_A 201 FGTRDDFRYFIDAAHAAGLNVILDWVPG 228 (617)
T ss_dssp GSCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 4666678999999999999999998864
No 398
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=24.47 E-value=3e+02 Score=24.32 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=27.8
Q ss_pred cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (397)
Q Consensus 60 ~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~ 118 (397)
.|+-.++|..+..++..+-.. +=.-.|+++...-.... ..+...|.+++.++-
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~---G~~~~iv~p~~~~~~k~---~~~~~~GA~Vv~v~~ 147 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQL---GVPATIVVPGTTPALTI---ERLKNEGATVKVVGE 147 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHH---TCCEEEEEETTSCHHHH---HHHHTTTCEEEEECS
T ss_pred EEEEeCCChHHHHHHHHHHHh---CCceEEEECCCCCHHHH---HHHHHcCCEEEEECC
Confidence 455555555554444433221 33456677665333333 333444999988863
No 399
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=24.40 E-value=3.4e+02 Score=23.35 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=31.2
Q ss_pred CCCHHHHHHHhc---C--CceEEEEecccCcccccccHHHHHHHHHhc-CcEEEEecc
Q psy8850 123 LITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILEIGELCRSK-GVIFHCDAA 174 (397)
Q Consensus 123 ~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-gi~livD~a 174 (397)
.++-+.+.+..+ + ...+++...|. ||.-++.+.+.++++++ ++.=|=|++
T Consensus 119 ~~s~~~l~~~f~~va~a~~lPiilYn~P~--tg~~l~~~~~~~La~~~pnIvgiK~~~ 174 (309)
T 3fkr_A 119 RVPEAQIFEFYARVSDAIAIPIMVQDAPA--SGTALSAPFLARMAREIEQVAYFXIET 174 (309)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCEEEEECGG--GCCCCCHHHHHHHHHHSTTEEEEEECS
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC--CCCCCCHHHHHHHHhhCCCEEEEECCC
Confidence 345555554432 1 34455555563 78888899999999765 666566444
No 400
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=24.35 E-value=1.5e+02 Score=25.84 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=31.5
Q ss_pred cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC
Q psy8850 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119 (397)
Q Consensus 60 ~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~ 119 (397)
.|+-.++|..+..++..+-.. +=+-.|+++...-......++.+ |.+|+.++.+
T Consensus 75 ~vv~aSsGN~g~alA~aa~~~---G~~~~iv~p~~~~~~k~~~~~~~---GA~V~~~~~~ 128 (325)
T 3dwg_A 75 TILEPTSGNTGISLAMAARLK---GYRLICVMPENTSVERRQLLELY---GAQIIFSAAE 128 (325)
T ss_dssp EEEEECSSHHHHHHHHHHHHH---TCEEEEEEESSSCHHHHHHHHHH---TCEEEEECST
T ss_pred EEEEeCCcHHHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHHHHC---CCEEEEECCC
Confidence 455556666665555444221 33356677766555555555555 9999999754
No 401
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=24.27 E-value=1.3e+02 Score=25.77 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCcEEEEeccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~ 175 (397)
++++++.|.++|++||+|--.
T Consensus 82 ld~~v~~a~~~Gi~Vild~H~ 102 (303)
T 7a3h_A 82 VKEAVEAAIDLDIYVIIDWHI 102 (303)
T ss_dssp HHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEecc
Confidence 677888899999999988543
No 402
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=24.26 E-value=44 Score=32.53 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.4
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
+..-|...+++++++-||++|+.||+|.+.
T Consensus 156 dp~~Gt~~d~~~Lv~~ah~~GI~VilD~V~ 185 (628)
T 1g5a_A 156 NPALGTIGDLREVIAALHEAGISAVVDFIF 185 (628)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CccCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 334577788999999999999999999874
No 403
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=24.23 E-value=3.1e+02 Score=22.84 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=40.8
Q ss_pred cEEEeCChhHHHH-HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---
Q psy8850 60 EIIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--- 135 (397)
Q Consensus 60 ~i~~~~g~t~a~~-~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--- 135 (397)
.+++..|++.++= .++..|. +.|..|++..-.-.......+.+...|.++..+.+|-. |.+++++++.+
T Consensus 25 k~~lVTGas~GIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~ 97 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLA----ARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVT---STDEVHAAVAAAVE 97 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTT---CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCC---CHHHHHHHHHHHHH
Confidence 3444444444443 3344455 56777766554333344444444444667777766622 56666655532
Q ss_pred ---CceEEEEecc
Q psy8850 136 ---DTILVSVMLV 145 (397)
Q Consensus 136 ---~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 98 ~~g~id~lv~nAg 110 (279)
T 3sju_A 98 RFGPIGILVNSAG 110 (279)
T ss_dssp HHCSCCEEEECCC
T ss_pred HcCCCcEEEECCC
Confidence 4555555443
No 404
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.14 E-value=3.2e+02 Score=22.97 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=42.7
Q ss_pred HhhC-CcEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCccc-ccccHHHHHHHHHhcC----cEEEEecc
Q psy8850 106 LEND-GFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIG-VIQPILEIGELCRSKG----VIFHCDAA 174 (397)
Q Consensus 106 ~~~~-g~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG-~~~~l~~i~~l~~~~g----i~livD~a 174 (397)
+... |++++.+..+ +.++++.+++ ..++.+|.++...++.- ....++++++.+++.| +.|++=.+
T Consensus 152 L~~~~G~eVi~LG~~----vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQ----VANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp GGGCTTEEEEECCSS----BCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred HHhcCCcEEEECCCC----CCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 5567 8998877664 5677776655 46888998886643311 3344677777777765 66665443
No 405
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.08 E-value=1.2e+02 Score=24.93 Aligned_cols=58 Identities=7% Similarity=-0.103 Sum_probs=32.4
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+.|.++.....+.+..-..+.++.++..+...+++.... +. . ....+.+++.|++++.
T Consensus 30 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~----~-~~~~~~~~~~~iPvV~ 87 (272)
T 3o74_A 30 ARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL-PP----E-DDSYRELQDKGLPVIA 87 (272)
T ss_dssp HTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC-CS----S-CCHHHHHHHTTCCEEE
T ss_pred HCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc-cc----c-HHHHHHHHHcCCCEEE
Confidence 448888877655321111234555566788888775432 11 1 2344456777887653
No 406
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=24.03 E-value=2.8e+02 Score=22.97 Aligned_cols=58 Identities=2% Similarity=0.075 Sum_probs=35.9
Q ss_pred CcEEEEeccC--------CCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850 110 GFRVTYLKPK--------NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (397)
Q Consensus 110 g~~v~~v~~~--------~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi 167 (397)
+..+..+++. ..+.+++++..+++.. +++.++..|...-.-...+.+++.+.+++.|+
T Consensus 183 ~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~~~~~~~g~ 249 (264)
T 3rpc_A 183 DPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKGNNI 249 (264)
T ss_dssp CCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHHHHHHHTTC
T ss_pred CCCEEEEecCccccccccCCcccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHHHHHHHcCC
Confidence 5666666665 3456777766665543 56677777765322233557777777777654
No 407
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=24.02 E-value=3e+02 Score=22.53 Aligned_cols=77 Identities=9% Similarity=0.025 Sum_probs=40.7
Q ss_pred EEEeCChhHHH-HHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----
Q psy8850 61 IIWTSGATESN-NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---- 135 (397)
Q Consensus 61 i~~~~g~t~a~-~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---- 135 (397)
+++|. ++.++ ..+...|. +.|..|++..-.-.........+...|.++..+.+|-. |.+++++.+.+
T Consensus 10 vlVTG-as~GIG~aia~~l~----~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 10 VAVIG-AGDYIGAEIAKKFA----AEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDAR---NEDEVTAFLNAADAH 81 (252)
T ss_dssp EEEEC-CSSHHHHHHHHHHH----HTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred EEEEC-CCchHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCC---CHHHHHHHHHHHHhh
Confidence 44444 44443 33344454 56777766555444555555555555777777777632 45555555432
Q ss_pred -CceEEEEecc
Q psy8850 136 -DTILVSVMLV 145 (397)
Q Consensus 136 -~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 82 g~id~lv~nAg 92 (252)
T 3h7a_A 82 APLEVTIFNVG 92 (252)
T ss_dssp SCEEEEEECCC
T ss_pred CCceEEEECCC
Confidence 4455544433
No 408
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=24.00 E-value=1.5e+02 Score=23.51 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.+|+.+...+..||+.++. .|+|.=..++..++...++
T Consensus 88 dLglnP~~dG~~Iri~iP~-lTeErRkelvK~~k~~~E~ 125 (184)
T 1ge9_A 88 ELNLNPTVQGNVIRVTLPP-LTEERRRELVRLLHKITEE 125 (184)
T ss_dssp HHCSCCEEETTEEEEECCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHH
Confidence 6777777778999999987 5777777777777666543
No 409
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=23.99 E-value=3.5e+02 Score=23.62 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=29.1
Q ss_pred cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (397)
Q Consensus 60 ~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~ 118 (397)
.|++++.++.+-..-+..+.....+.|.+|.+-.+ +.+...+ ...|+++..++.
T Consensus 6 ~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~--~~~~~~~---~~~G~~~~~~~~ 59 (402)
T 3ia7_A 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTT--PLFADEV---KAAGAEVVLYKS 59 (402)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEC--HHHHHHH---HHTTCEEEECCC
T ss_pred EEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcC--HHHHHHH---HHcCCEEEeccc
Confidence 36666555555433334444444467777765443 2333333 334888888764
No 410
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=23.98 E-value=1.5e+02 Score=23.56 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=26.7
Q ss_pred hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.+|+.+...+..||+.++. .|+|.=..++..++...++
T Consensus 86 dLglnP~~dG~~Iri~iP~-lTeErRkelvK~~k~~~E~ 123 (185)
T 1wqg_A 86 DLGVNPTNDGALIRVAVPQ-LTEERRRELVKQAKHKGEE 123 (185)
T ss_dssp TTCCCCEECSSCEEEECCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHH
Confidence 3455555567899999987 5777777777776666543
No 411
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=23.91 E-value=48 Score=32.15 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.7
Q ss_pred cCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
+..-|...+++++++-||++|+.||+|.+..
T Consensus 196 ~~~~G~~~~~~~lv~~~H~~Gi~VilD~V~N 226 (618)
T 3m07_A 196 HSAYGTPDDFKAFIDAAHGYGLSVVLDIVLN 226 (618)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEeecCc
Confidence 3345777778999999999999999998754
No 412
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=23.83 E-value=1.6e+02 Score=23.29 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=26.4
Q ss_pred hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+|+.+...+..||+.++. .|+|.=..++..++...++
T Consensus 87 LglnP~~dG~~Iri~iP~-lTeErRkelvK~~k~~~E~ 123 (185)
T 1ise_A 87 LGLNPNSAGSDIRVPLPP-LTEERRKDLTKIVRGEAEQ 123 (185)
T ss_dssp TTCCCEESSSEEEEECCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHH
Confidence 455555667899999987 5777777777776666543
No 413
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=23.73 E-value=1.4e+02 Score=21.51 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=38.0
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS 135 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 135 (397)
..++..+..+.+..+...+...|+.+..+++..+. ++.++|++.+..
T Consensus 5 i~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~-~~~~eL~~~l~~ 51 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAELDDLAWDYDAIDIKKNP-PAASLIRNWLEN 51 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCEEEEETTTSC-CCHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCceEEEEeccCc-hhHHHHHHHHHH
Confidence 45677888999999999888889999999887655 678888887753
No 414
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=23.59 E-value=33 Score=32.08 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc-cccHHHHHHHHHhcCcEEEEecc
Q psy8850 96 HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV-IQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 96 ~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~-~~~l~~i~~l~~~~gi~livD~a 174 (397)
|.++....+.-.....-+..+|.. .-++.+++......++|+++. |. ....+++.++|+++|+.++==++
T Consensus 24 ~~~~~~~~~~p~~~DlavI~vPa~----~v~~~v~e~~~~Gv~~viis~-----Gf~~~~~~~l~~~A~~~g~rliGPNc 94 (480)
T 3dmy_A 24 VRRWDSACQKLPDANLALISVAGE----YAAELANQALDRNLNVMMFSD-----NVTLEDEIQLKTRAREKGLLVMGPDC 94 (480)
T ss_dssp ESSHHHHHHHSTTCCEEEECSCHH----HHHHHHHHHHHTTCEEEECCC-----CCCHHHHHHHHHHHHHTTCCEECSSC
T ss_pred cchHHHHHhcCCCCCEEEEecCHH----HHHHHHHHHHhcCCCEEEECC-----CCCHHHHHHHHHHHHHcCCEEEecCc
Confidence 445554444322223445445433 246778888888888555542 33 33456899999999998875555
No 415
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A
Probab=23.55 E-value=44 Score=32.60 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=24.5
Q ss_pred cccccccHHHHHHHHHhcCcEEEEeccc
Q psy8850 148 EIGVIQPILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 148 ~tG~~~~l~~i~~l~~~~gi~livD~a~ 175 (397)
.-|...+++++++-||++|+.||+|.+.
T Consensus 151 ~~Gt~~df~~Lv~~aH~~GI~VilD~V~ 178 (644)
T 3czg_A 151 SLGSNDDLVALTSRLREAGISLCADFVL 178 (644)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3577778999999999999999999875
No 416
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=23.43 E-value=2.3e+02 Score=23.59 Aligned_cols=68 Identities=4% Similarity=-0.042 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHH-hcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 96 HKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEK-ICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 96 ~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~-i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
|......++... +.|.++.....+.+.. ....+.+. ...+...+++..... ..+..+.+++.|+++|.
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~~l~~~~vdgiIi~~~~~-------~~~~~~~l~~~~iPvV~ 94 (288)
T 3gv0_A 25 TSQMVFGITEVLSTTQYHLVVTPHIHAKD-SMVPIRYILETGSADGVIISKIEP-------NDPRVRFMTERNMPFVT 94 (288)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCBSSGGG-TTHHHHHHHHHTCCSEEEEESCCT-------TCHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCcchh-HHHHHHHHHHcCCccEEEEecCCC-------CcHHHHHHhhCCCCEEE
Confidence 333444444333 3488888776553221 12334443 346788877754321 12345556778987664
No 417
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=23.31 E-value=1.5e+02 Score=23.53 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=27.0
Q ss_pred hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
.+|+.+...+..||+.++. .|+|.=..++..++...++
T Consensus 86 dLglnP~~dG~~Iri~iP~-lTeErRkelvK~~k~~~E~ 123 (185)
T 1is1_A 86 DLGLNPMSAGTIIRVPLPP-LTEERRKDLVKIVRGEAEG 123 (185)
T ss_dssp TSSCCCEEETTEEEEECCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHH
Confidence 3455565667899999987 5777777777776666543
No 418
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=23.25 E-value=1.1e+02 Score=26.59 Aligned_cols=104 Identities=11% Similarity=0.130 Sum_probs=50.3
Q ss_pred cEEEEeccCCCCCCCHHHHHHHhcCCceEE-EEecccCcccc--cccHHHHHHHHHhcCcEEEEecccccCccccccCcc
Q psy8850 111 FRVTYLKPKNNGLITLSQLEEKICSDTILV-SVMLVNNEIGV--IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY 187 (397)
Q Consensus 111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v-~~~~~~~~tG~--~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~ 187 (397)
.++.+...++ +-...|++++..+..++ +++.+..|.|. ......+.++|+++|++++.-....-....-.+..+
T Consensus 8 mrivf~Gt~~---fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~ 84 (318)
T 3q0i_A 8 LRIVFAGTPD---FAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDESKQQLAAL 84 (318)
T ss_dssp CEEEEECCSH---HHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHTT
T ss_pred CEEEEEecCH---HHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHHHHHHHhc
Confidence 4566665431 12455666666544433 66667777663 222345677899999998632111000011123345
Q ss_pred cccEEEec-ccccc-----CCCCceEEEEecCCCCc
Q psy8850 188 KVDLMSFS-AHKIY-----GPKGIGALYIRRNPRTR 217 (397)
Q Consensus 188 ~~d~~~~s-~~K~~-----g~~g~g~~~~~~~~~~~ 217 (397)
.+|+++.. +.++. .....|++-+.+.++..
T Consensus 85 ~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSlLP~ 120 (318)
T 3q0i_A 85 NADLMVVVAYGLLLPKVVLDTPKLGCINVHGSILPR 120 (318)
T ss_dssp CCSEEEESSCCSCCCHHHHTSSTTCEEEEESSSTTT
T ss_pred CCCEEEEeCccccCCHHHHhhCcCCEEEeCCccCcC
Confidence 78877654 43332 22235777777665444
No 419
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=23.10 E-value=3.8e+02 Score=23.50 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=47.0
Q ss_pred CCEEEEcCCCChhhHHHHHHH---hhCCcEEEEeccCCCCC-CCHHHHHHHh---cC---CceEEEEecccCcccccccH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKPKNNGL-ITLSQLEEKI---CS---DTILVSVMLVNNEIGVIQPI 155 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~---~~~g~~v~~v~~~~~~~-~d~~~l~~~i---~~---~~~~v~~~~~~~~tG~~~~l 155 (397)
+-.|++... ..++..+++.. ...|+.-..+-...... .+-+.+.+.. .+ ...+++...| .||..++.
T Consensus 92 rvpViaGvg-~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P--~tg~~l~~ 168 (344)
T 2hmc_A 92 GIPVIVGTG-AVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP--YYGFATRA 168 (344)
T ss_dssp TCCEEEECC-CSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG--GGTBCCCH
T ss_pred CCcEEEecC-CCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC--ccCCCcCH
Confidence 344555443 33444444433 23366544443333333 4445544332 22 3446666656 68999999
Q ss_pred HHHHHH-HHhcCcEEEEeccc
Q psy8850 156 LEIGEL-CRSKGVIFHCDAAQ 175 (397)
Q Consensus 156 ~~i~~l-~~~~gi~livD~a~ 175 (397)
+.+.++ ++--+|.=|=|..-
T Consensus 169 e~~~~L~a~~pnIvGiKdssg 189 (344)
T 2hmc_A 169 DLFFALRAEHKNLVGFKEFGG 189 (344)
T ss_dssp HHHHHHHHHCTTEEEEEECSC
T ss_pred HHHHHHHhcCCCEEEEEcCCC
Confidence 999999 65446666666553
No 420
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=23.05 E-value=3.5e+02 Score=23.05 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=42.8
Q ss_pred CEEEEcCCCChhhHHHHHH---HhhCCcEEEEeccCCCCCCCHHHHHHHhc---C--CceEEEEecccCcccccccHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRK---LENDGFRVTYLKPKNNGLITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~---~~~~g~~v~~v~~~~~~~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
-.|++... ..++..+++. +...|+.-..+-....+..+-+.+.+..+ + ...+++...|. .||..++.+.+
T Consensus 77 vpviaGvg-~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~-~tg~~l~~~~~ 154 (297)
T 3flu_A 77 VPVIAGTG-ANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPG-RTVVSMTNDTI 154 (297)
T ss_dssp SCEEEECC-CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHH-HHSSCCCHHHH
T ss_pred CcEEEeCC-CcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCc-hhccCCCHHHH
Confidence 34554432 3344444443 23346544433322223344444444332 1 33455444443 47888888889
Q ss_pred HHHHHhcCcEEEEecc
Q psy8850 159 GELCRSKGVIFHCDAA 174 (397)
Q Consensus 159 ~~l~~~~gi~livD~a 174 (397)
.++++--++.=|=|.+
T Consensus 155 ~~La~~pnivgiKdss 170 (297)
T 3flu_A 155 LRLAEIPNIVGVKEAS 170 (297)
T ss_dssp HHHTTSTTEEEEEECS
T ss_pred HHHHcCCCEEEEEeCC
Confidence 9988434665566654
No 421
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=23.04 E-value=1.5e+02 Score=21.41 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=38.3
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS 135 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 135 (397)
..++..+..+.+..+...+...|+.+..+++..+. ++.++|++.+..
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~-~~~~eL~~~l~~ 53 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITPQVVLYLETP-PSVDKLKELLQQ 53 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCCEEECTTTSC-CCHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCC-CcHHHHHHHHHh
Confidence 56788889999999999998889998888887654 678888877653
No 422
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=22.93 E-value=3.3e+02 Score=22.62 Aligned_cols=35 Identities=6% Similarity=-0.002 Sum_probs=18.6
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecc
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLV 145 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~ 145 (397)
..+.++..+.+|-. |.+++++.+.+ +..+++....
T Consensus 68 ~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~g~id~lv~nAg 108 (287)
T 3pxx_A 68 KTGRKAYTAEVDVR---DRAAVSRELANAVAEFGKLDVVVANAG 108 (287)
T ss_dssp HTTSCEEEEECCTT---CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred hcCCceEEEEccCC---CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 34667777766622 45555555432 4555554443
No 423
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=22.87 E-value=1.6e+02 Score=25.28 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=41.4
Q ss_pred CEEEEcCCCChhhHHHHHHHh---hCCcEEEEeccCCCCCCCHHHHHHHhc---C--CceEEEEecccCcccccccHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLE---NDGFRVTYLKPKNNGLITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~---~~g~~v~~v~~~~~~~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
-.|++... ..++..+++... ..|+.-..+-.......+-+.+.+..+ + ...+++...|. .||..++.+.+
T Consensus 71 ~pviaGvg-~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~-~tg~~l~~~~~ 148 (292)
T 2ojp_A 71 IPVIAGTG-ANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPS-RTGCDLLPETV 148 (292)
T ss_dssp SCEEEECC-CSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHH-HHSCCCCHHHH
T ss_pred CcEEEecC-CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-hhccCCCHHHH
Confidence 34544433 234444444432 235544433222223345555554332 2 23444444343 47888888889
Q ss_pred HHHHHhcCcEEEEecc
Q psy8850 159 GELCRSKGVIFHCDAA 174 (397)
Q Consensus 159 ~~l~~~~gi~livD~a 174 (397)
.++++--++.=|=|..
T Consensus 149 ~~La~~pnivgiK~s~ 164 (292)
T 2ojp_A 149 GRLAKVKNIIGIXEAT 164 (292)
T ss_dssp HHHHTSTTEEEC-CCS
T ss_pred HHHHcCCCEEEEeCCC
Confidence 9988533554444543
No 424
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=22.82 E-value=2.7e+02 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=26.3
Q ss_pred HHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 129 LEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 129 l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+...++++..+|+++. .|....+-++++.++++|+.+|.
T Consensus 110 ~~~~~~~~d~vI~iS~----SG~t~~~~~~~~~ak~~g~~vI~ 148 (198)
T 2xbl_A 110 VQALGNEGDVLIGYST----SGKSPNILAAFREAKAKGMTCVG 148 (198)
T ss_dssp HHHHCCTTCEEEEECS----SSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHhhCCCCCEEEEEeC----CCCCHHHHHHHHHHHHCCCeEEE
Confidence 4444566666666654 36656677888889999976653
No 425
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.79 E-value=1.5e+02 Score=24.36 Aligned_cols=57 Identities=4% Similarity=-0.177 Sum_probs=24.0
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+.|.++.....+.+..-..+.++.++..+...+++...... +...+.+++.|++++.
T Consensus 27 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-------~~~~~~~~~~~iPvV~ 83 (276)
T 2h0a_A 27 EQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT-------ERFEEGRLPTERPVVL 83 (276)
T ss_dssp GGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------------CCSCSSCEEE
T ss_pred HCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC-------HHHHHHHhhcCCCEEE
Confidence 34888776654432222244566666677888777644221 1333445667886543
No 426
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=22.77 E-value=1.5e+02 Score=23.54 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=26.1
Q ss_pred hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372 (397)
Q Consensus 335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (397)
+|+.+...+..||+.++. .|+|.=..++..++...++
T Consensus 87 LglnP~~dG~~Iri~iP~-lTeErRkelvK~~k~~~E~ 123 (185)
T 1dd5_A 87 LGLNPINDGNVIRLVFPS-PTTEQREKWVKKAKEIVEE 123 (185)
T ss_dssp SCCCCEECSSCEEEECCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHH
Confidence 445555567899999987 5777777777776666543
No 427
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=22.74 E-value=38 Score=24.90 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCcEEEEeccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~ 175 (397)
-+.|.++|+++|++++.|..-
T Consensus 73 A~~I~~~A~e~~VPi~e~~~L 93 (123)
T 2jli_A 73 VQTVRKIAEEEGVPILQRIPL 93 (123)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHH
Confidence 478999999999999999653
No 428
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=22.73 E-value=3.1e+02 Score=23.15 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=31.4
Q ss_pred cEEEeCChhHHHH-HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh
Q psy8850 60 EIIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI 133 (397)
Q Consensus 60 ~i~~~~g~t~a~~-~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i 133 (397)
.+++..|++.++= .+...|. +.|-.|++..-.-.......+.+ |.+...+..|-. |.+++++++
T Consensus 30 KvalVTGas~GIG~aiA~~la----~~Ga~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~---~~~~v~~~~ 94 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFV----AEGARVFITGRRKDVLDAAIAEI---GGGAVGIQADSA---NLAELDRLY 94 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHH---CTTCEEEECCTT---CHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHc---CCCeEEEEecCC---CHHHHHHHH
Confidence 3555555555543 3344444 56777766554333333333333 555555655522 455555544
No 429
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=22.71 E-value=81 Score=22.76 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEec
Q psy8850 101 DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVML 144 (397)
Q Consensus 101 ~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~ 144 (397)
.+++.+...|.++..+.+..-.++|.+.+.+.+....++++++.
T Consensus 30 eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~ 73 (118)
T 3ju3_A 30 DVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVES 73 (118)
T ss_dssp HHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCC
T ss_pred HHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEEC
Confidence 33444545577777776665566777777777765445555654
No 430
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.69 E-value=1.2e+02 Score=24.16 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=31.3
Q ss_pred CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEe
Q psy8850 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172 (397)
Q Consensus 110 g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD 172 (397)
|.++..++... .+++.+.+..+..+|++.-.+.-+-. -++.+.+++.+ |+.||+=
T Consensus 60 g~~~~a~~~~~-----~~~i~~~~~~~~dvViIDEaqfl~~~--~v~~l~~l~~~-~~~Vi~~ 114 (191)
T 1xx6_A 60 GEKEQAVAIKN-----SREILKYFEEDTEVIAIDEVQFFDDE--IVEIVNKIAES-GRRVICA 114 (191)
T ss_dssp SCEEECEEESS-----STHHHHHCCTTCSEEEECSGGGSCTH--HHHHHHHHHHT-TCEEEEE
T ss_pred CCceeeEeeCC-----HHHHHHHHhccCCEEEEECCCCCCHH--HHHHHHHHHhC-CCEEEEE
Confidence 55554444432 23555555555789999877652211 14555555554 8998884
No 431
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.64 E-value=1e+02 Score=23.06 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcC-CceEEEEec-ccCcccccccHHHHHHHH
Q psy8850 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICS-DTILVSVML-VNNEIGVIQPILEIGELC 162 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~-~~~~tG~~~~l~~i~~l~ 162 (397)
|-+++.+. ++...++.. .|+.+..+..-+ .| ++ .+.++|.+ +..+|+++. |.++.....|...|...|
T Consensus 31 Gf~l~AT~----gTa~~L~e~--~Gl~v~~v~k~~~eG--~p-~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A 101 (134)
T 2xw6_A 31 RFPLVATG----TTGRRIEEA--TGLTVEKLLSGPLGG--DQ-QMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVC 101 (134)
T ss_dssp TSCEEECH----HHHHHHHHH--HCCCCEECSCGGGTH--HH-HHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHH
T ss_pred CCEEEEcc----HHHHHHHHh--hCceEEEEEecCCCC--cc-hHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHH
Confidence 66777433 343333330 388877774323 34 32 46666655 567766553 213222245678999999
Q ss_pred HhcCcEEEEecc
Q psy8850 163 RSKGVIFHCDAA 174 (397)
Q Consensus 163 ~~~gi~livD~a 174 (397)
-.|+++++..-+
T Consensus 102 ~~~~IP~~T~la 113 (134)
T 2xw6_A 102 DVHGVPLATNPM 113 (134)
T ss_dssp HHHTCCEECSHH
T ss_pred HHcCCCeEcCHH
Confidence 999999886643
No 432
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Probab=22.55 E-value=50 Score=33.36 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=23.3
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++.||++||.||+|-+..
T Consensus 689 ~Gt~~df~~lv~~~H~~GI~VilD~V~N 716 (844)
T 3aie_A 689 YGTADDLVKAIKALHSKGIKVMADWVPD 716 (844)
T ss_dssp TBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 3555668889999999999999998854
No 433
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=22.54 E-value=1.6e+02 Score=25.27 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=36.1
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEE-EEec
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF-HCDA 173 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~l-ivD~ 173 (397)
...|..+.....+.+..-..+.++..+..+...+++.... .+.+.+.+++++.++++ ++|.
T Consensus 90 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~------~~~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 90 EEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF------LSVDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS------SCHHHHHHHHHHCSSCEEEESS
T ss_pred HHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC------CChHHHHHHHHcCCCCEEEEcC
Confidence 3458888877644222112234555666788888775432 12356778888899864 4453
No 434
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=22.42 E-value=44 Score=25.10 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 129 LEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 129 l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
+++++....+.+++.. |.. -+++.++|+++|+.++-+.+.+
T Consensus 87 ~~~~~~~gi~~i~~~~-----g~~--~~~~~~~a~~~Gir~vgpnc~g 127 (140)
T 1iuk_A 87 LPEVLALRPGLVWLQS-----GIR--HPEFEKALKEAGIPVVADRCLM 127 (140)
T ss_dssp HHHHHHHCCSCEEECT-----TCC--CHHHHHHHHHTTCCEEESCCHH
T ss_pred HHHHHHcCCCEEEEcC-----CcC--HHHHHHHHHHcCCEEEcCCccc
Confidence 4444444555555432 222 4889999999999999888765
No 435
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.39 E-value=22 Score=23.04 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCccchhhhccccccccccc
Q psy8850 364 KLLKMKVKKLRELSPLWDMHKEGIDLNTIKWA 395 (397)
Q Consensus 364 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (397)
..|.++++++++.-|.....|+-+|..|..++
T Consensus 27 ~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~A 58 (68)
T 2lfh_A 27 DDMNHCYSRLRELVPGVPRGTQLSQVEILQRV 58 (68)
T ss_dssp SHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCccHHHHHHHH
Confidence 46778888899988988777777777666554
No 436
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=22.24 E-value=3.5e+02 Score=23.38 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=45.8
Q ss_pred CEEEEcCCCChhhHHHHHH---HhhCCcEEEEeccCCCCCCCHHHHHHHhc---C--CceEEEEecccCcccccccHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRK---LENDGFRVTYLKPKNNGLITLSQLEEKIC---S--DTILVSVMLVNNEIGVIQPILEI 158 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~---~~~~g~~v~~v~~~~~~~~d~~~l~~~i~---~--~~~~v~~~~~~~~tG~~~~l~~i 158 (397)
-.|++... ..++..+++. +...|+.-..+-....+..+-+.+.+... + ...+++...|. .||..++.+.+
T Consensus 92 vpViaGvg-~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~-~tg~~l~~~~~ 169 (315)
T 3si9_A 92 VPVVAGAG-SNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPS-RSVIDMAVETM 169 (315)
T ss_dssp SCBEEECC-CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHH-HHSCCCCHHHH
T ss_pred CcEEEeCC-CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCch-hhCCCCCHHHH
Confidence 44555433 3344444443 33346554444333333345555544332 1 34455554443 47888999999
Q ss_pred HHHHHhc-CcEEEEecc
Q psy8850 159 GELCRSK-GVIFHCDAA 174 (397)
Q Consensus 159 ~~l~~~~-gi~livD~a 174 (397)
.++++++ ++.=|=|.+
T Consensus 170 ~~La~~~pnIvgiKdss 186 (315)
T 3si9_A 170 RDLCRDFKNIIGVKDAT 186 (315)
T ss_dssp HHHHHHCTTEEEEEECS
T ss_pred HHHHhhCCCEEEEEeCC
Confidence 9999855 665566654
No 437
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.20 E-value=1.5e+02 Score=25.63 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 96 HKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 96 ~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
|......++... ..|..+.....+.+..-..+.++.++..+...+++..... + +...+.+++.|++++.
T Consensus 83 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~------~-~~~~~~l~~~~iPvV~ 152 (344)
T 3kjx_A 83 FPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH------S-EAARAMLDAAGIPVVE 152 (344)
T ss_dssp HHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC------C-HHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC------C-HHHHHHHHhCCCCEEE
Confidence 334444444433 3488887665542211112345555667888887754321 1 2455567778887653
No 438
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.05 E-value=2.2e+02 Score=23.68 Aligned_cols=60 Identities=10% Similarity=-0.195 Sum_probs=32.6
Q ss_pred hhCCcEEEEeccCCCCCCCHH---HHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE-Eec
Q psy8850 107 ENDGFRVTYLKPKNNGLITLS---QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH-CDA 173 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~---~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li-vD~ 173 (397)
.+.|.++.....+.+..-..+ .++..+..+...+++..... + ....+.+++.|++++ +|.
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~~l~~~~iPvV~~~~ 98 (290)
T 2rgy_A 35 RAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL------H-DEDLDELHRMHPKMVFLNR 98 (290)
T ss_dssp HHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS------C-HHHHHHHHHHCSSEEEESS
T ss_pred HHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC------C-HHHHHHHhhcCCCEEEEcc
Confidence 345888876655432211123 56666677888887764321 1 233344556788654 443
No 439
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=22.04 E-value=2.8e+02 Score=23.40 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=41.2
Q ss_pred hhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc---cccHHHHHHHHHhcCcEEEEec
Q psy8850 97 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV---IQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 97 ~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~---~~~l~~i~~l~~~~gi~livD~ 173 (397)
..+..+.+.+.+.|+++..+-.+ |+..-+++..-+..+| ++.+ .|.|. +.+.+-|..+++..+++||+|+
T Consensus 122 ~~tv~aa~~L~~~Gf~Vlpy~~d-----d~~~akrl~~~G~~aV-mPlg-~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eG 194 (265)
T 1wv2_A 122 VETLKAAEQLVKDGFDVMVYTSD-----DPIIARQLAEIGCIAV-MPLA-GLIGSGLGICNPYNLRIILEEAKVPVLVDA 194 (265)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECS-----CHHHHHHHHHSCCSEE-EECS-SSTTCCCCCSCHHHHHHHHHHCSSCBEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHHhCCCEE-EeCC-ccCCCCCCcCCHHHHHHHHhcCCCCEEEeC
Confidence 45555666666669998765444 4444444444466666 3322 23222 2345556666666799999984
Q ss_pred c
Q psy8850 174 A 174 (397)
Q Consensus 174 a 174 (397)
-
T Consensus 195 G 195 (265)
T 1wv2_A 195 G 195 (265)
T ss_dssp C
T ss_pred C
Confidence 4
No 440
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.00 E-value=1.6e+02 Score=25.23 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=22.8
Q ss_pred ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc
Q psy8850 137 TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a 174 (397)
..+++...|. .||..++.+.+.++++--++.=|=|..
T Consensus 128 lPiilYn~P~-~tg~~l~~~~~~~La~~pnivgiK~ss 164 (291)
T 3tak_A 128 LPLILYNVPG-RTGVDLSNDTAVRLAEIPNIVGIKDAT 164 (291)
T ss_dssp SCEEEEECHH-HHSCCCCHHHHHHHTTSTTEEEEEECS
T ss_pred CCEEEEeccc-ccCCCCCHHHHHHHHcCCCEEEEEeCC
Confidence 3444444332 468888888888888433665565654
No 441
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.87 E-value=2.5e+02 Score=23.36 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=30.1
Q ss_pred CCcEEEEec--cCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYLK--PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~--~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++.... .+.+..-..+.++..+..+...+++.... . .......+.+++.|++++.
T Consensus 30 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~----~~~~~~~~~~~~~~iPvV~ 89 (288)
T 1gud_A 30 LGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-S----VNLVMPVARAWKKGIYLVN 89 (288)
T ss_dssp HTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS-S----STTHHHHHHHHHTTCEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-h----HHHHHHHHHHHHCCCeEEE
Confidence 387777655 22111111234556666788888775432 1 1222334446678887654
No 442
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=21.83 E-value=3.3e+02 Score=22.21 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=45.4
Q ss_pred CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC
Q psy8850 56 ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS 135 (397)
Q Consensus 56 ~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 135 (397)
+....+++..||..|...+-.. . +.|-.|.+-++....- +..+...| .+.++.-. .+.++|+
T Consensus 29 L~gk~VLVVGgG~va~~ka~~L-l----~~GA~VtVvap~~~~~---l~~l~~~~-~i~~i~~~----~~~~dL~----- 90 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGF-L----QEGAAITVVAPTVSAE---INEWEAKG-QLRVKRKK----VGEEDLL----- 90 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHH-G----GGCCCEEEECSSCCHH---HHHHHHTT-SCEEECSC----CCGGGSS-----
T ss_pred cCCCEEEEECCCHHHHHHHHHH-H----HCCCEEEEECCCCCHH---HHHHHHcC-CcEEEECC----CCHhHhC-----
Confidence 4444688888888777766553 3 3444554444543222 22222222 23333211 2333332
Q ss_pred CceEEEEecccCcccccccHHHHHHHHHhcCcEE
Q psy8850 136 DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF 169 (397)
Q Consensus 136 ~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~l 169 (397)
+..+|+.+ ||...--..+.+.|+ .|+++
T Consensus 91 ~adLVIaA-----T~d~~~N~~I~~~ak-~gi~V 118 (223)
T 3dfz_A 91 NVFFIVVA-----TNDQAVNKFVKQHIK-NDQLV 118 (223)
T ss_dssp SCSEEEEC-----CCCTHHHHHHHHHSC-TTCEE
T ss_pred CCCEEEEC-----CCCHHHHHHHHHHHh-CCCEE
Confidence 34555543 333333467788887 88875
No 443
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=21.82 E-value=41 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCcEEEEeccc
Q psy8850 155 ILEIGELCRSKGVIFHCDAAQ 175 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a~ 175 (397)
-..|.++|+++|++++.|..-
T Consensus 83 A~~I~e~A~e~gVPi~e~~~L 103 (137)
T 3bzs_A 83 ALQIIKLAELYDIPVIEDIPL 103 (137)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHH
Confidence 468999999999999999653
No 444
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=21.75 E-value=3.5e+02 Score=22.47 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=43.2
Q ss_pred cEEEeCChhHHHH-HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---
Q psy8850 60 EIIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--- 135 (397)
Q Consensus 60 ~i~~~~g~t~a~~-~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--- 135 (397)
.+++..|++.++= .++..|. +.|..|++....-.......+.+...|.++..+..|-. |.+++++.+.+
T Consensus 27 k~~lVTGas~gIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLA----VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVT---SESEIIEAFARLDE 99 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTT---CHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC---CHHHHHHHHHHHHH
Confidence 4555555555543 3444455 57778877665444444444445445667777776622 56666655542
Q ss_pred ---CceEEEEecc
Q psy8850 136 ---DTILVSVMLV 145 (397)
Q Consensus 136 ---~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 100 ~~g~iD~lv~nAg 112 (271)
T 4ibo_A 100 QGIDVDILVNNAG 112 (271)
T ss_dssp HTCCCCEEEECCC
T ss_pred HCCCCCEEEECCC
Confidence 4555554433
No 445
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=21.71 E-value=3.2e+02 Score=22.05 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=39.8
Q ss_pred EEEeCChhHHHH-HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----
Q psy8850 61 IIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---- 135 (397)
Q Consensus 61 i~~~~g~t~a~~-~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---- 135 (397)
.++..|++.++= .+...|. +.|.+|++..............+...+.++..+..|-. |.+++++.+.+
T Consensus 7 ~vlITGas~gIG~~~a~~l~----~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALA----SKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNIS---DIESIQNFFAEIKAE 79 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHH----HTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHT
T ss_pred EEEEECCCChHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCC---CHHHHHHHHHHHHHH
Confidence 444444444433 3344444 56777766554333333444444444667777776632 55666555432
Q ss_pred --CceEEEEecc
Q psy8850 136 --DTILVSVMLV 145 (397)
Q Consensus 136 --~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 80 ~~~id~li~~Ag 91 (247)
T 3lyl_A 80 NLAIDILVNNAG 91 (247)
T ss_dssp TCCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 3556555443
No 446
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=21.70 E-value=1.4e+02 Score=21.12 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=33.5
Q ss_pred cCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecc
Q psy8850 134 CSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSA 196 (397)
Q Consensus 134 ~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~ 196 (397)
.++.++++++..-..|+. =.+++.+.++++|+.+-+.+. +.+...-... +.|++..+.
T Consensus 4 ~~~mkIlL~C~aGmSTsl--lv~km~~~a~~~gi~v~i~a~-~~~~~~~~~~--~~DvvLLgP 61 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQ--LANAINEGANLTEVRVIANSG-AYGAHYDIMG--VYDLIILAP 61 (108)
T ss_dssp -CCEEEEEEESSSSHHHH--HHHHHHHHHHHHTCSEEEEEE-ETTSCTTTGG--GCSEEEECG
T ss_pred ccCceEEEECCCCCCHHH--HHHHHHHHHHHCCCceEEEEc-chHHHHhhcc--CCCEEEECh
Confidence 345667777765444444 247888889999987766552 2222211122 568887653
No 447
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=21.68 E-value=4.2e+02 Score=23.43 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhCCC---------CCcEEEeCChhHHHHHHHH--HhHhhhccCCCE-EEEcCCCChhhHHHHHHHh
Q psy8850 40 EKAIEKARNEVAQLIYAD---------PREIIWTSGATESNNLAIK--GAAHFYKKRGKH-IITVQTEHKSVLDSIRKLE 107 (397)
Q Consensus 40 ~~~~~~~~~~la~~~~~~---------~~~i~~~~g~t~a~~~~l~--~l~~~~~~~g~~-vl~~~~~~~s~~~~~~~~~ 107 (397)
.+.+..+.+.|.+.++-. ...+...+.|...++.++. .+. +|.. ++...+.-+-+.-+...+.
T Consensus 22 ~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~-----~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 22 SKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIP-----RGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEE-----TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCcc-----CCcEEEEEcCCCCChHHHHHHHHH
Confidence 345666777777777631 1234444556667777775 443 4544 4555565555544444332
Q ss_pred ---hCCcEEEEeccCC
Q psy8850 108 ---NDGFRVTYLKPKN 120 (397)
Q Consensus 108 ---~~g~~v~~v~~~~ 120 (397)
..|.++.++..+.
T Consensus 97 ~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 97 QAQKAGGTCAFIDAEH 112 (366)
T ss_dssp HHHHTTCCEEEEESSC
T ss_pred HHHHCCCeEEEEECCC
Confidence 2366788887764
No 448
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=21.66 E-value=3.3e+02 Score=23.34 Aligned_cols=48 Identities=8% Similarity=0.044 Sum_probs=23.9
Q ss_pred CCHHHHHHHhc-----CCce--EEEEecccCccccc--cc--------HHHHHHHHHhcCcEEEE
Q psy8850 124 ITLSQLEEKIC-----SDTI--LVSVMLVNNEIGVI--QP--------ILEIGELCRSKGVIFHC 171 (397)
Q Consensus 124 ~d~~~l~~~i~-----~~~~--~v~~~~~~~~tG~~--~~--------l~~i~~l~~~~gi~liv 171 (397)
++++++.+.+. .+++ +|++.+.+...... .. ...+..+|+++|+.+++
T Consensus 162 ~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~ 226 (315)
T 3bh0_A 162 QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 226 (315)
T ss_dssp CBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 45556554442 1345 66776665433210 00 23455666677766555
No 449
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Probab=21.64 E-value=53 Score=32.38 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=23.7
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++-||++|+.||+|.+..
T Consensus 317 ~Gt~edfk~LV~~aH~~GI~VilD~V~N 344 (695)
T 3zss_A 317 LGTLDDFDHFVTEAGKLGLEIALDFALQ 344 (695)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEECCE
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEeecc
Confidence 4566668999999999999999998764
No 450
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*
Probab=21.62 E-value=67 Score=31.39 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=43.5
Q ss_pred hhhHHHHHHHhhCCcEEEEeccCC---CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850 97 KSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (397)
Q Consensus 97 ~s~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~ 173 (397)
......+..++..|++.+++..-- .+.-+ ..-...-+..++..-|+..+++++++-||++|+.||+|-
T Consensus 111 ~gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~~---------~GY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~Gi~Vi~D~ 181 (655)
T 3ucq_A 111 KGVEERLDYLEGLGVKYLHLMPLLRPREGEND---------GGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDL 181 (655)
T ss_dssp HHHHTTHHHHHHTTCCEEEECCCEEECSSCCG---------GGTSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhHHHHHcCCCEEEECCCcCCCCCCCC---------CCcCCcCcCccCccCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 333344455566688877775321 11000 122233333345557888899999999999999999997
Q ss_pred cc
Q psy8850 174 AQ 175 (397)
Q Consensus 174 a~ 175 (397)
+.
T Consensus 182 V~ 183 (655)
T 3ucq_A 182 VL 183 (655)
T ss_dssp CC
T ss_pred ec
Confidence 74
No 451
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=21.55 E-value=4.7e+02 Score=24.13 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCC
Q psy8850 47 RNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125 (397)
Q Consensus 47 ~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d 125 (397)
...++.+++..+.. |+=...|+.+..+.+.... ..+..|+..+..-.....+.+.+.+.|..+..+. -|
T Consensus 90 s~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~----~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~------~D 159 (464)
T 3m6w_A 90 AQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARM----GGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQ------AP 159 (464)
T ss_dssp THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHT----TTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEEC------SC
T ss_pred HHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhC----CCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEE------CC
Confidence 45556677765554 4445555555555555444 3334666666544444444444444466633222 25
Q ss_pred HHHHHHHhcCCceEEEEecccCccccc
Q psy8850 126 LSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 126 ~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
..++.....+....|++..|.+.+|++
T Consensus 160 a~~l~~~~~~~FD~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 160 PRALAEAFGTYFHRVLLDAPCSGEGMF 186 (464)
T ss_dssp HHHHHHHHCSCEEEEEEECCCCCGGGT
T ss_pred HHHhhhhccccCCEEEECCCcCCcccc
Confidence 666655455667899998888888864
No 452
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=21.54 E-value=1.9e+02 Score=24.25 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=32.8
Q ss_pred hCCc-EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE-Eec
Q psy8850 108 NDGF-RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH-CDA 173 (397)
Q Consensus 108 ~~g~-~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li-vD~ 173 (397)
..|. ++.....+.+..-..+.++.++..+...|++.... +. ......+.+++.|++++ +|.
T Consensus 30 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~-~~----~~~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 30 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD-PA----AAGTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp TCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-GG----GHHHHHHHHHTTTCCEEEESS
T ss_pred hcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-cc----hhHHHHHHHHHCCCcEEEecC
Confidence 3486 77766543211111234555666788888775332 11 23445556677888755 443
No 453
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=21.50 E-value=4.1e+02 Score=23.65 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=44.7
Q ss_pred cCCCEEEEcCCCChh-------hHHHHHHHhhCCcEEEEeccCC--CCC------CCHHHHHHHhc-CCceEEEEecccC
Q psy8850 84 KRGKHIITVQTEHKS-------VLDSIRKLENDGFRVTYLKPKN--NGL------ITLSQLEEKIC-SDTILVSVMLVNN 147 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s-------~~~~~~~~~~~g~~v~~v~~~~--~~~------~d~~~l~~~i~-~~~~~v~~~~~~~ 147 (397)
++||+|-+-.|+.+. +..+.+.+...|++|+.-+.-. .+. -..++|.+++. +..++|+..-.-+
T Consensus 41 k~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGy 120 (371)
T 3tla_A 41 AVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGD 120 (371)
T ss_dssp CTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCS
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 678999877777543 3445556666799998776531 121 13566666665 4678887766554
Q ss_pred ccccccc
Q psy8850 148 EIGVIQP 154 (397)
Q Consensus 148 ~tG~~~~ 154 (397)
-+-.+.|
T Consensus 121 ga~rlLp 127 (371)
T 3tla_A 121 NSNSLLP 127 (371)
T ss_dssp CGGGGGG
T ss_pred cHHHHHh
Confidence 4445555
No 454
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.48 E-value=1.3e+02 Score=25.33 Aligned_cols=56 Identities=7% Similarity=-0.038 Sum_probs=33.9
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.+.|.++.....+.+.. ..+.++.++..+...+++...... .+.+ +.+++ |++++.
T Consensus 38 ~~~g~~~~~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~------~~~~-~~~~~-~iPvV~ 93 (289)
T 3k9c_A 38 TRRGYDVMLSAVAPSRA-EKVAVQALMRERCEAAILLGTRFD------TDEL-GALAD-RVPALV 93 (289)
T ss_dssp HHTTCEEEEEEEBTTBC-HHHHHHHHTTTTEEEEEEETCCCC------HHHH-HHHHT-TSCEEE
T ss_pred HHCCCEEEEEeCCCCHH-HHHHHHHHHhCCCCEEEEECCCCC------HHHH-HHHHc-CCCEEE
Confidence 34588888776654333 456677777788888887654321 1333 33455 886553
No 455
>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A
Probab=21.47 E-value=53 Score=33.90 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=22.7
Q ss_pred cccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 150 GVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 150 G~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
|...+++++++.||++||.||+|-++-
T Consensus 743 Gt~~efk~lV~alH~~GI~VIlDvV~N 769 (1039)
T 3klk_A 743 GSDEDLRNALQALHKAGLQAIADWVPD 769 (1039)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 555568899999999999999998753
No 456
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=21.42 E-value=2e+02 Score=25.05 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=12.5
Q ss_pred hHHHHHHHhhCCcEEEEeccCC
Q psy8850 99 VLDSIRKLENDGFRVTYLKPKN 120 (397)
Q Consensus 99 ~~~~~~~~~~~g~~v~~v~~~~ 120 (397)
....++.+ |.+++.++-+.
T Consensus 118 k~~~~~~~---GA~v~~~~~~~ 136 (341)
T 1f2d_A 118 NIELSRIM---GADVRVIEDGF 136 (341)
T ss_dssp HHHHHHHT---TCEEEECCCCC
T ss_pred cHHHHHhC---CCEEEEeCCcc
Confidence 44444444 99999887553
No 457
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.42 E-value=2.2e+02 Score=24.59 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++.....+.+..-..+.+++++. .+..+|++.. .. .....+.+.+++.|++++.
T Consensus 33 ~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~-----~~~~~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 33 LGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQ-----YVAPQILRLSQGSGIKLFI 91 (350)
T ss_dssp HTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CS-----SHHHHHHHHHTTSCCEEEE
T ss_pred cCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-ch-----hhHHHHHHHHHhCCCcEEE
Confidence 38888877654322112445777777 4888887753 11 1345667778889998764
No 458
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=21.27 E-value=55 Score=32.63 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=24.0
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++-||++|+.||+|-++.
T Consensus 247 ~Gt~~df~~lv~~~H~~Gi~VilD~V~N 274 (755)
T 3aml_A 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHS 274 (755)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4666678999999999999999998865
No 459
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=21.06 E-value=74 Score=26.54 Aligned_cols=60 Identities=7% Similarity=0.004 Sum_probs=37.0
Q ss_pred CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh---cCCceEEEEeccc
Q psy8850 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVN 146 (397)
Q Consensus 85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i---~~~~~~v~~~~~~ 146 (397)
.|.+|+++.+.. .....+.+...|.++..+|+=..-..|.+.+.+.+ ..+...+++++++
T Consensus 7 ~g~~vlvtr~~~--~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~ 69 (261)
T 1wcw_A 7 DAVRVAYAGLRR--KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGV 69 (261)
T ss_dssp -CCEEEECCSTT--HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHH
T ss_pred CCCEEEEeCCCc--hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHH
Confidence 367899988764 34445556666999988876322112445555443 2356788888774
No 460
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=20.91 E-value=55 Score=33.80 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=23.2
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++.||++||.||+|-+.-
T Consensus 909 yGt~edfk~LV~alH~~GI~VIlDvV~N 936 (1108)
T 3ttq_A 909 YGTDGDLRATIQALHHANMQVMADVVDN 936 (1108)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3555568899999999999999998843
No 461
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=20.90 E-value=4.5e+02 Score=23.51 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=44.0
Q ss_pred CCEEEEcCCCChhhHH---HHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEe-cccCccccccc---HHHH
Q psy8850 86 GKHIITVQTEHKSVLD---SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVM-LVNNEIGVIQP---ILEI 158 (397)
Q Consensus 86 g~~vl~~~~~~~s~~~---~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~-~~~~~tG~~~~---l~~i 158 (397)
..+|++.+ +.|.+.. ....+...|+.++.++-+ -...+.+. .+...|++- .--...|.+.. --.+
T Consensus 211 ~~~V~v~E-tRP~~qGarltA~eL~~~GIpvtlI~Ds-----a~~~~M~~--~~Vd~ViVGAD~V~aNG~v~NKiGTy~l 282 (383)
T 2a0u_A 211 LERVYACE-TRPWNQGARLTVYECVQEDIPCTLICDG-----AASSLMLN--RKIDAVVVGADRICQNGDTANKIGTYNL 282 (383)
T ss_dssp EEEEEEEC-CTTTTHHHHTHHHHHHHTTCCEEEECGG-----GHHHHHHH--SCCCEEEECCSEECTTCCEEEETTHHHH
T ss_pred eEEEEEeC-CCCccchHHHHHHHHHHcCCCEEEEehh-----HHHHHhhc--CCCCEEEECccEEecCCCEeecccHHHH
Confidence 35666655 2334433 234455669999888733 12222221 234444442 22233454443 3567
Q ss_pred HHHHHhcCcEEEEecc
Q psy8850 159 GELCRSKGVIFHCDAA 174 (397)
Q Consensus 159 ~~l~~~~gi~livD~a 174 (397)
+-+||.||++++|=+-
T Consensus 283 Al~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 283 AVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEeCC
Confidence 8889999999988654
No 462
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.86 E-value=2.1e+02 Score=23.70 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=31.6
Q ss_pred hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
...|.++.....+.+..-..+.++.++..+...+++.... + .......+.+++.|++++.
T Consensus 29 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~----~~~~~~~~~~~~~~iPvV~ 88 (290)
T 2fn9_A 29 EQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTD-A----DGSIANVKRAKEAGIPVFC 88 (290)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC-T----TTTHHHHHHHHHTTCCEEE
T ss_pred HHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-h----HHHHHHHHHHHHCCCeEEE
Confidence 3458888766543211111234555666778888775432 1 1223344556677887553
No 463
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=20.77 E-value=45 Score=31.49 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=48.9
Q ss_pred cCCCEEEEcCCCChhhHHHHHHHhh---C--CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccC-------cccc
Q psy8850 84 KRGKHIITVQTEHKSVLDSIRKLEN---D--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNN-------EIGV 151 (397)
Q Consensus 84 ~~g~~vl~~~~~~~s~~~~~~~~~~---~--g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~-------~tG~ 151 (397)
+.|--+++-+..|............ . ...+..- +..+.+..++++......|-+--... .+|.
T Consensus 291 ~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaG-----NVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~Gv 365 (556)
T 4af0_A 291 EAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAG-----NVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAV 365 (556)
T ss_dssp HTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEE-----EECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCS
T ss_pred hcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEec-----cccCHHHHHHHHHcCCCEEeecCCCCcccccccccCC
Confidence 4555566666667655555544322 1 2222221 23467777777766666554432211 1344
Q ss_pred ccc----HHHHHHHHHhcCcEEEEecc
Q psy8850 152 IQP----ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 152 ~~~----l~~i~~l~~~~gi~livD~a 174 (397)
=.| +.+.++.++++|++||.|.-
T Consensus 366 G~PQ~tAi~~~a~~a~~~~vpvIADGG 392 (556)
T 4af0_A 366 GRPQGTAVYAVAEFASRFGIPCIADGG 392 (556)
T ss_dssp CCCHHHHHHHHHHHHGGGTCCEEEESC
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEecCC
Confidence 345 45677888999999999964
No 464
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=20.67 E-value=1.7e+02 Score=22.24 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=35.5
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li 170 (397)
..|.++.....+.+|.+ +|.+.++..++...|++ ||.+....--.|.+..+..++++|
T Consensus 39 ~~g~~v~~~QSN~EgeL-Id~Ih~a~~~~~dgiII----NpgA~THtSvAlrDAl~~v~~P~V 96 (149)
T 2uyg_A 39 ELGLGVVFRQTNYEGQL-IEWVQQAHQEGFLAIVL----NPGALTHYSYALLDAIRAQPLPVV 96 (149)
T ss_dssp HTTCCEEEEECSCHHHH-HHHHHHTTTTTCSEEEE----ECGGGGGTCHHHHHHHHTSCSCEE
T ss_pred HcCCEEEEEeeCCHHHH-HHHHHHhccCCeeEEEE----ccchhccccHHHHHHHHhCCCCEE
Confidence 34888888888877755 67777665554666655 344554443445555555566554
No 465
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=20.65 E-value=58 Score=32.25 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=24.2
Q ss_pred ccccccHHHHHHHHHhcCcEEEEecccc
Q psy8850 149 IGVIQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 149 tG~~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
-|...+++++++-||++|+.||+|-+..
T Consensus 309 yGt~~dfk~lV~~~H~~GI~VilD~V~N 336 (722)
T 3k1d_A 309 FGTPDDFRALVDALHQAGIGVIVDWVPA 336 (722)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEEee
Confidence 4666778999999999999999998854
No 466
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=20.62 E-value=4.3e+02 Score=24.17 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=49.7
Q ss_pred cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEeccCCCCCCCHHHHHHHhcCCce
Q psy8850 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKNNGLITLSQLEEKICSDTI 138 (397)
Q Consensus 60 ~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~ 138 (397)
.+++..||..|...+-. |. +.|-.|.+-++.... .+..+.. .++++..-. ...++++ +..
T Consensus 14 ~vlVvGgG~va~~k~~~-L~----~~ga~V~vi~~~~~~---~~~~l~~~~~i~~~~~~------~~~~~l~-----~~~ 74 (457)
T 1pjq_A 14 DCLIVGGGDVAERKARL-LL----EAGARLTVNALTFIP---QFTVWANEGMLTLVEGP------FDETLLD-----SCW 74 (457)
T ss_dssp EEEEECCSHHHHHHHHH-HH----HTTBEEEEEESSCCH---HHHHHHTTTSCEEEESS------CCGGGGT-----TCS
T ss_pred EEEEECCCHHHHHHHHH-HH----hCcCEEEEEcCCCCH---HHHHHHhcCCEEEEECC------CCccccC-----Ccc
Confidence 58888888877776655 34 456666555554322 2222222 244433211 2333332 344
Q ss_pred EEEEecccCcccccccHHHHHHHHHhcCcEE-EEecc
Q psy8850 139 LVSVMLVNNEIGVIQPILEIGELCRSKGVIF-HCDAA 174 (397)
Q Consensus 139 ~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~l-ivD~a 174 (397)
+|+.. ||....-..+.+.|+++|+++ ++|+.
T Consensus 75 lVi~a-----t~~~~~n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 75 LAIAA-----TDDDTVNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp EEEEC-----CSCHHHHHHHHHHHHHTTCEEEETTCT
T ss_pred EEEEc-----CCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 55553 333323467889999999987 56655
No 467
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=20.57 E-value=1.8e+02 Score=21.00 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=37.5
Q ss_pred EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC 134 (397)
Q Consensus 88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 134 (397)
..++..+..+.+..+...+...|+.+..+++..+. ++.++|.+.+.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~-~~~~eL~~~l~ 51 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEYTNRLIVDDN-PTVEELKAWIP 51 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTTC-CCHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceEEEecccCc-CCHHHHHHHHH
Confidence 45777888999999999998889999888887654 57888887765
No 468
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=20.46 E-value=52 Score=33.69 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=22.4
Q ss_pred cccHHHHHHHHHhcCcEEEEecccc
Q psy8850 152 IQPILEIGELCRSKGVIFHCDAAQA 176 (397)
Q Consensus 152 ~~~l~~i~~l~~~~gi~livD~a~~ 176 (397)
..+++++++-||++|+.||+|-++.
T Consensus 531 ~~dfk~LV~~aH~~GI~VILDvV~N 555 (921)
T 2wan_A 531 ITELKQLIQSLHQQRIGVNMDVVYN 555 (921)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccc
Confidence 5779999999999999999998864
No 469
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=20.46 E-value=3.9e+02 Score=22.51 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=61.6
Q ss_pred EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHH-HHHhhCCcEEEEecc------------CCCC-----
Q psy8850 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGFRVTYLKP------------KNNG----- 122 (397)
Q Consensus 61 i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~g~~v~~v~~------------~~~~----- 122 (397)
.....||..++.+...+-. ..+..+++.-.-..+...+ +.+.+.|+....+.. +++|
T Consensus 34 ~~~~~GG~~~NvA~~la~l-----G~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~T~~~~~~~~~~g~~~~~ 108 (299)
T 3ikh_A 34 VSQDIGGKGANQAIILSRC-----GIETRLIAATGNDSNGAWIRQQIKNEPLMLLPDGHFNQHSDTSIILNSADGDNAII 108 (299)
T ss_dssp EEEEEECHHHHHHHHHHHT-----TCCEEEECCCCSSHHHHHHHHHGGGSSCEEESSSCCSSCCEEEEEECSSSCSCEEE
T ss_pred eeeccCCHHHHHHHHHHHC-----CCCeEEEEEECCCHHHHHHHHHHHHcCCceeeeEecCCCCcEEEEEEcCCCCeEEE
Confidence 5556677666555444332 2345565555444333333 344444655443311 1112
Q ss_pred -------CCCHHHHHHHhc--CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850 123 -------LITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (397)
Q Consensus 123 -------~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~ 193 (397)
.++.+++..... ++.+++++.... + ...+.++.+.++++|+.+++|........ ..+. ..+|++.
T Consensus 109 ~~~~a~~~l~~~~~~~~~~~~~~~~~v~~~g~~-~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~-~~ll-~~~dil~ 182 (299)
T 3ikh_A 109 TTTAAADTFSLDEMIPHMADAVAGDILLQQGNF-S---LDKTRALFQYARSRGMTTVFNPSPVNPDF-CHLW-PLIDIAV 182 (299)
T ss_dssp EECHHHHHCCHHHHGGGGTTCCTTCEEEECSCS-C---HHHHHHHHHHHHHTTCEEEECCCSCCGGG-GGCG-GGCSEEE
T ss_pred EeCCccccCCHHHHHHHHhhhccCCEEEECCCC-C---HHHHHHHHHHHHHcCCEEEEccccchhhH-HHHH-hhCCEEE
Confidence 234555543222 345677664211 1 11256778889999999999975432111 1111 1467776
Q ss_pred ec
Q psy8850 194 FS 195 (397)
Q Consensus 194 ~s 195 (397)
.+
T Consensus 183 ~N 184 (299)
T 3ikh_A 183 VN 184 (299)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 470
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=20.39 E-value=45 Score=25.31 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCcEEEEecc
Q psy8850 155 ILEIGELCRSKGVIFHCDAA 174 (397)
Q Consensus 155 l~~i~~l~~~~gi~livD~a 174 (397)
-..|.++|+++|++++.|..
T Consensus 82 A~~I~e~A~e~gVPi~e~~~ 101 (144)
T 2jlj_A 82 VQTVRKIAEEEGVPILQRIP 101 (144)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46899999999999999965
No 471
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=20.36 E-value=4.1e+02 Score=22.75 Aligned_cols=18 Identities=17% Similarity=0.003 Sum_probs=12.2
Q ss_pred CHHHHHHHhcCCceEEEEe
Q psy8850 125 TLSQLEEKICSDTILVSVM 143 (397)
Q Consensus 125 d~~~l~~~i~~~~~~v~~~ 143 (397)
|.+.+++++. +..+|+-.
T Consensus 90 d~~~~~~~~~-~~d~Vih~ 107 (351)
T 3ruf_A 90 DLTTCEQVMK-GVDHVLHQ 107 (351)
T ss_dssp CHHHHHHHTT-TCSEEEEC
T ss_pred CHHHHHHHhc-CCCEEEEC
Confidence 6788888877 45555444
No 472
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.34 E-value=3.7e+02 Score=22.25 Aligned_cols=79 Identities=8% Similarity=-0.006 Sum_probs=41.2
Q ss_pred cEEEeCChhHHHHH-HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---
Q psy8850 60 EIIWTSGATESNNL-AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--- 135 (397)
Q Consensus 60 ~i~~~~g~t~a~~~-~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--- 135 (397)
..++..|++.++=. ++..|. +.|..|++..-.-.........+...|.++..+.+|-. |.+++++++.+
T Consensus 5 k~~lVTGas~GIG~aia~~la----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~ 77 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELG----VAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT---DRHSVAAFAQAAVD 77 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----HTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTT---CHHHHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCC---CHHHHHHHHHHHHH
Confidence 34555555555433 334444 56777766554333344444444444667777776622 45555555432
Q ss_pred ---CceEEEEecc
Q psy8850 136 ---DTILVSVMLV 145 (397)
Q Consensus 136 ---~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 78 ~~g~iD~lVnnAG 90 (264)
T 3tfo_A 78 TWGRIDVLVNNAG 90 (264)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 4555555443
No 473
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.14 E-value=1.5e+02 Score=24.36 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=33.8
Q ss_pred CCcEEEEeccCCCCCCCH----HHHHHHhcCC-ceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 109 DGFRVTYLKPKNNGLITL----SQLEEKICSD-TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 109 ~g~~v~~v~~~~~~~~d~----~~l~~~i~~~-~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
.|.++.....+.++ |. +.++.++..+ ...|++..... .......+.+++.|++++.
T Consensus 29 ~g~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~vdgii~~~~~~-----~~~~~~~~~~~~~~ipvV~ 89 (276)
T 3ksm_A 29 AGVTLLHRSTKDDG--DIAGQIQILSYHLSQAPPDALILAPNSA-----EDLTPSVAQYRARNIPVLV 89 (276)
T ss_dssp HTCEEEECCCSSTT--CHHHHHHHHHHHHHHSCCSEEEECCSST-----TTTHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEECCCCCC--CHHHHHHHHHHHHHhCCCCEEEEeCCCH-----HHHHHHHHHHHHCCCcEEE
Confidence 38888877654322 33 3566666677 88888764321 1234555667788886654
No 474
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=20.12 E-value=5.1e+02 Score=23.78 Aligned_cols=96 Identities=14% Similarity=0.025 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccCCCCCC
Q psy8850 47 RNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPKNNGLI 124 (397)
Q Consensus 47 ~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~~~~~~ 124 (397)
...++..++..+.. |+=...|+.+..+.+.... ..+..|+..+..-.....+.+.+.+.|.. +..+. -
T Consensus 94 s~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~----~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~------~ 163 (456)
T 3m4x_A 94 AMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQM----KGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN------H 163 (456)
T ss_dssp THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHH----TTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC------C
T ss_pred HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHc----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe------C
Confidence 44556667765554 4434455555555555444 33346666665444444444444444543 33322 2
Q ss_pred CHHHHHHHhcCCceEEEEecccCccccc
Q psy8850 125 TLSQLEEKICSDTILVSVMLVNNEIGVI 152 (397)
Q Consensus 125 d~~~l~~~i~~~~~~v~~~~~~~~tG~~ 152 (397)
|...+..........|++..|.+.+|++
T Consensus 164 Da~~l~~~~~~~FD~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 164 APAELVPHFSGFFDRIVVDAPCSGEGMF 191 (456)
T ss_dssp CHHHHHHHHTTCEEEEEEECCCCCGGGT
T ss_pred CHHHhhhhccccCCEEEECCCCCCcccc
Confidence 5566654455667889998888888864
No 475
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=20.07 E-value=2.1e+02 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=20.6
Q ss_pred ceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 137 TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 137 ~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
...|++...+--+-...++..+.+.++++|+.|+.
T Consensus 76 ~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv~l~~ 110 (167)
T 3guv_A 76 VSFVLVFKLSRFARNAADVLSTLQIMQDYGVNLIC 110 (167)
T ss_dssp CSEEEESCGGGTCSSHHHHHHHHHHHHHTTCEEEE
T ss_pred ccEEEEEeCchhcCCHHHHHHHHHHHHHCCCEEEE
Confidence 46666666654443444455566667777776553
No 476
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.05 E-value=2.3e+02 Score=23.62 Aligned_cols=57 Identities=12% Similarity=-0.077 Sum_probs=29.8
Q ss_pred hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (397)
Q Consensus 108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv 171 (397)
+.|.++.....+.+..-..+.++.++..+...+++..... + +...+.+++.|++++.
T Consensus 44 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~~l~~~~iPvV~ 100 (289)
T 2fep_A 44 MYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI------T-DEHVAEFKRSPVPIVL 100 (289)
T ss_dssp HTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC------C-HHHHHHHHHSSSCEEE
T ss_pred HcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC------C-HHHHHHHHhcCCCEEE
Confidence 4588877665432111112345555667788887754321 2 2233345577886543
No 477
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=20.04 E-value=3.7e+02 Score=22.16 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=36.7
Q ss_pred EEEeCChhHHH-HHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----
Q psy8850 61 IIWTSGATESN-NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---- 135 (397)
Q Consensus 61 i~~~~g~t~a~-~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---- 135 (397)
+++|. ++.++ ..++..|. +.|..|++..-.-.........+...|.++..+..|-. |.+.+++++.+
T Consensus 34 vlITG-asggIG~~la~~L~----~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~---~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 34 VLITG-AGHGIGRLTAYEFA----KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS---NREDIYSSAKKVKAE 105 (272)
T ss_dssp EEEET-TTSHHHHHHHHHHH----HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred EEEEC-CCchHHHHHHHHHH----HCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCC---CHHHHHHHHHHHHHH
Confidence 55554 44443 33344444 46666665443222222333333333556666666522 45666555432
Q ss_pred --CceEEEEecc
Q psy8850 136 --DTILVSVMLV 145 (397)
Q Consensus 136 --~~~~v~~~~~ 145 (397)
+..+++....
T Consensus 106 ~g~iD~li~~Ag 117 (272)
T 1yb1_A 106 IGDVSILVNNAG 117 (272)
T ss_dssp TCCCSEEEECCC
T ss_pred CCCCcEEEECCC
Confidence 4555554443
No 478
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=20.04 E-value=3.1e+02 Score=25.10 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=53.6
Q ss_pred CEEEEcCCCChhhHHHHHHHhhC-C-cEEEEeccCCCCCCCHHHHHHHhcCCc-eEEEEecccCcccccccHHHHHHHHH
Q psy8850 87 KHIITVQTEHKSVLDSIRKLEND-G-FRVTYLKPKNNGLITLSQLEEKICSDT-ILVSVMLVNNEIGVIQPILEIGELCR 163 (397)
Q Consensus 87 ~~vl~~~~~~~s~~~~~~~~~~~-g-~~v~~v~~~~~~~~d~~~l~~~i~~~~-~~v~~~~~~~~tG~~~~l~~i~~l~~ 163 (397)
+.+.+-+|-.......+..+... | +.+ + -|+....+++++++.+..+. .++.+-. |-.|.+-+..+++++|+
T Consensus 296 pI~~IEDPl~~dD~eg~a~Lt~~lg~i~I--v-GDEl~vTn~~~i~~~Ie~~a~n~IlIKv--nqiGGITEalkaa~lA~ 370 (441)
T 3qtp_A 296 PIASIEDPFAEDDWAAWNKFTVEHGNFQI--V-GDDLLVTNPARVQMAMDKNACNSVLIKV--NQIGTLTETFKTIKMAQ 370 (441)
T ss_dssp CEEEEESCSCTTCHHHHHHHHHHTTTSEE--E-ESTTTTTCHHHHHHHHHHTCCSEEEECG--GGTCCHHHHHHHHHHHH
T ss_pred ceeeecCCCChHHHHHHHHHHHhcCCceE--E-eccccccCHHHHHHHHHcCCCCEEEecc--cccccHHHHHHHHHHHH
Confidence 47777777777666666665442 4 222 1 12223346889998887654 4555543 34688888889999999
Q ss_pred hcCcEEEEe
Q psy8850 164 SKGVIFHCD 172 (397)
Q Consensus 164 ~~gi~livD 172 (397)
++|+.+++=
T Consensus 371 ~~G~~vmvs 379 (441)
T 3qtp_A 371 EKGWGVMAS 379 (441)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEe
Confidence 999987764
Done!