RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8850
(397 letters)
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 773 bits (1998), Expect = 0.0
Identities = 276/399 (69%), Positives = 344/399 (86%), Gaps = 3/399 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+PYL + FGNPASR+H +GW AE+A++ ARN++A LI ADP
Sbjct: 7 LDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAAHFY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++NG+I L +LE + DTILVS+M VNNEIGVIQ I IGE+CR +G+IFH DAAQ+VG
Sbjct: 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFSAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL T
Sbjct: 187 KVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPT 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA R+A+ EM E +RI L+ RL+NG+ + IEE+Y+NGD+ R+P NLN+SF
Sbjct: 247 HQIVGMGEAARIAKEEMATENERIRALRDRLWNGI-KDIEEVYLNGDLEQRVPGNLNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
ID+ I+L++ + KLRELSPLW+M KEG+DLN+I+WA H
Sbjct: 366 IDYAIELVRKSIGKLRELSPLWEMFKEGVDLNSIEWAHH 404
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Protein synthesis, tRNA and rRNA
base modification].
Length = 402
Score = 686 bits (1772), Expect = 0.0
Identities = 279/397 (70%), Positives = 337/397 (84%), Gaps = 1/397 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DY+ATTP+DPRV +KM+PYL +FGNPASR+H +GW AE+A+E ARN+VA+LI AD RE
Sbjct: 7 LDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSRE 66
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I++TSGATESNNLAIKG AHFYK +G HIIT +TEHK+VLD+ R LE +GF VTYL PK+
Sbjct: 67 IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS 126
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGLI L +L+ I DTILVS+M VNNEIGVIQ I IGE+CR + V FH DAAQ+VGKI
Sbjct: 127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI 186
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
IN+ KVDLMS S HKIYGPKGIGALY+RR PR R+EA IHGGGHE G+RSGTL THQ
Sbjct: 187 PINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQ 246
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+A+ EM ++ +L L+ RL NG+ +SIEE+Y+NGD+ +R+P NLN+SFN+
Sbjct: 247 IVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI-KSIEEVYLNGDLEHRVPGNLNVSFNY 305
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRFTIGRFTTE+EID
Sbjct: 306 VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365
Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
+ +KL+K + KLRELSPLW+M KEG+DLN+I+WA H
Sbjct: 366 YAVKLVKSAIDKLRELSPLWEMFKEGVDLNSIEWAAH 402
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 587 bits (1516), Expect = 0.0
Identities = 224/385 (58%), Positives = 287/385 (74%), Gaps = 7/385 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATTP+DP V++ M+PYL FGNP+S H +G A KA+E+AR ++A+L+ ADP E
Sbjct: 5 LDNAATTPVDPEVLEAMLPYLTEVFGNPSSL-HSFGREARKAVEEAREQIAKLLGADPEE 63
Query: 61 IIWTSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
II+TSGATESNNLAIKGAA Y ++GKHIIT EH +VL++ R LE GF VTYL
Sbjct: 64 IIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+NGL+ L QLEE + DTILVS+M NNE G IQPI EIGE+C+ +G++FH DA QAVG
Sbjct: 124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI I+++ VDL+SFSAHK GPKGIGALY+R P R+E IHGGG E GLRSGT
Sbjct: 184 KIPIDLEELGVDLLSFSAHKFGGPKGIGALYVR--PGVRLEPLIHGGGQERGLRSGTENV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG G+A +A E++EE R+ L+ RL +GL+E I ++Y+NGD R+P+ LN SF
Sbjct: 242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF 301
Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
+EGESLL+A + IAVS+GSAC+S SLEPS+VLRA+G ++ELAH SIRF++GRFTTE
Sbjct: 302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE 361
Query: 357 KEIDFTIKLLKMKVKKLRELSPLWD 381
+EID + LK +K+LRELSPLW
Sbjct: 362 EEIDAAAEALKEIIKRLRELSPLWA 386
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 553 bits (1426), Expect = 0.0
Identities = 224/362 (61%), Positives = 273/362 (75%), Gaps = 2/362 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D ATTPIDPRV+D M+P+L FGNP SR H+YGW +E A+EKAR +VA LI ADP+E
Sbjct: 3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKE 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSGATESNNLAIKG HFYK + KH+IT QTEHK VLDS R L+ +GF VTYL K+
Sbjct: 63 IIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+GL+ L +L I DT LVSVM VNNEIGVIQP+ EIGELCR K V+FH DAAQAVGKI
Sbjct: 123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI 182
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++ + VDLMS S HKIYGPKG+GALY+RR PR R+E + GGG E G RSGT T
Sbjct: 183 PVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPL 242
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING--DMNNRIPHNLNISF 298
+VG+G A LA EM + K + L++RL NGL + + +NG D R P LN+SF
Sbjct: 243 VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSF 302
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
++EGESLLM +K++AVSSGSACTSASLEPSYVLRALG +E+AH S+R +GRFTTE+E
Sbjct: 303 AYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEE 362
Query: 359 ID 360
+D
Sbjct: 363 VD 364
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 477 bits (1230), Expect = e-169
Identities = 179/381 (46%), Positives = 252/381 (66%), Gaps = 6/381 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATT +DP V++ M+PY FGNP+S H +G KA+E+AR +VA+L+ A+P E
Sbjct: 3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDE 61
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSG TES+N AIK A ++ +HIIT EH +VL + LE G++VTYL
Sbjct: 62 IIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE 120
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + L +L I DT LVSVM NNE G I PI EIGE+ + +G +FH DA QAVGKI
Sbjct: 121 EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI 180
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++ +D++S S HK++GPKG+GALYIR+ TR + GG E G R+GT
Sbjct: 181 PIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQERGRRAGTENVPG 238
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG+G+A LA ++EE R+ L+ RL GL+ I + +NGD R+P+ +NISF +
Sbjct: 239 IVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY 298
Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGE++L+ + + I SSGSACTS SLEPS+VLRA+G AH SIRF++ R+ TE++
Sbjct: 299 IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEED 358
Query: 359 IDFTIKLLKMKVKKLRELSPL 379
ID+ +++L + +LR +SP
Sbjct: 359 IDYVLEVLPPIIARLRAMSPF 379
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 399 bits (1028), Expect = e-139
Identities = 170/353 (48%), Positives = 239/353 (67%), Gaps = 6/353 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D++ATTPIDP V + M+P+L +FGNP+SR H +G A+KA+E+AR +VA+ + AD E
Sbjct: 2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEE 61
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
+I+TSGATESNNLAI G A +++G KHIIT EH +VL+ IR LE +GF VTYL
Sbjct: 62 VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
+G I + +L + I DT+LVS+M VNNE G IQPI EI E+ + FH DAAQ VGK
Sbjct: 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK 181
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLA 237
I +++ ++DL+S S HKIYGPKGIGAL IR+ P+ ++ + GGG E GLR GTL
Sbjct: 182 ITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLP 241
Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
H IVGMGEA +AR + ++ ++ +L + L + +NGD IPH LN S
Sbjct: 242 VHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFS 299
Query: 298 FNFIEGESLLMAIK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349
+ + E+L++ ++ D AVS+GSAC+S+ EPS+VL+A+G + + A +IRF+
Sbjct: 300 IDGVNSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRFS 352
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 337 bits (866), Expect = e-114
Identities = 170/382 (44%), Positives = 238/382 (62%), Gaps = 9/382 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +ATT +DP+V + M P+ +GNP S H +G AI +A +++ + I A D
Sbjct: 3 LDNNATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLD 61
Query: 60 EIIWTSGATESNNLAIKGA--AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117
+II TS ATESNN +KG K HIIT + EH +V + LE+ G VTYL
Sbjct: 62 DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLP 121
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
G IT Q+ E I T LVSVM NNE G+I PI EIGE+C+ +GV+FH DA QA+
Sbjct: 122 INEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAI 181
Query: 178 GKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237
GKI +++Q VD +SFSAHK +GPKG+G LYIR+ + HGG H G RSGTL
Sbjct: 182 GKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKG--VELTPLFHGGEHMGGRRSGTLN 239
Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
IV MGEA RLA + E + L+ RL + L+E + ++++ GD +R+P+ + IS
Sbjct: 240 VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILIS 298
Query: 298 FNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355
+EGE++L + IA S+GSAC S LE + V+ A+G + ELAH++IR ++ RFTT
Sbjct: 299 IKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT 358
Query: 356 EKEIDFTIKLLKMKVKKLRELS 377
E+EID+TI++ K V++LR +S
Sbjct: 359 EEEIDYTIEVFKKAVQRLRAIS 380
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 297 bits (762), Expect = 2e-98
Identities = 121/378 (32%), Positives = 177/378 (46%), Gaps = 32/378 (8%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E 60
D +ATT V+D + Y GN H G A +A E+AR +VA+ I A E
Sbjct: 4 DSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
II+TSG TE+ NL K G I+ + EH + L ++L G V +
Sbjct: 64 IIFTSGTTEAINLVAISLGRSLKP-GDEILVTEMEHHANLVPWQELAKRTGATVRVIPVD 122
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
NGL+ L LE+ + T LV++ V+N G + P+ EIG+L G + DAAQAVG
Sbjct: 123 PNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGH 182
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------HEYG-- 230
I++Q VD ++FS HK+YGP GIG LY RR+ ++ + GGG E
Sbjct: 183 RPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFA 242
Query: 231 -----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
+GT I+G+G A LA I ++ K L LY L +I I + G
Sbjct: 243 DAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERL-LAIPGIRLYG 301
Query: 285 DMNNRIPHNLNISFNFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELA 342
R P ++ +F + + L+ + IAV SG C +P V L
Sbjct: 302 PPAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL------- 350
Query: 343 HSSIRFTIGRFTTEKEID 360
++R ++ + TE+E+D
Sbjct: 351 GGTLRASLYFYNTEEEVD 368
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 275 bits (705), Expect = 9e-90
Identities = 136/368 (36%), Positives = 193/368 (52%), Gaps = 5/368 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DY+ATTP+ + FGN S H G TA ++ R A++I + +
Sbjct: 4 LDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGEEQG 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TSG TESN LAI+ + + KHIIT EH S+ + LE+ G+ VT +
Sbjct: 63 IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+GLI L LE I DT+L S+ N+EIG IQPI EIG L + V+FH D Q GK+
Sbjct: 123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL 182
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I++ +D +S SAHKIYGPKG+GA+YI NP+ R + G HE G R GT+
Sbjct: 183 PIDVFEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNVPG 240
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
I A M+EE R L+ + I + G + +PH + ++
Sbjct: 241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG 300
Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEG+ ++ + IA+S+GSAC EPS + A+G E A +RF+ G+ TT+ +
Sbjct: 301 IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQ 360
Query: 359 IDFTIKLL 366
ID TI L
Sbjct: 361 IDTTIHAL 368
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 197 bits (504), Expect = 2e-59
Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 42/392 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR- 59
+D +AT+ V+D + Y R N H A E AR VA+ + AD
Sbjct: 26 LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD 85
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
EI++T G TE+ NL +G K G I+ EH S + ++L G +V +
Sbjct: 86 EIVFTRGTTEALNLVARGLGR-SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++GL+ L LE+ I T LV++ V+N G + P+ EI EL G + DAAQA G
Sbjct: 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAG 204
Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---------- 227
+ I++Q D ++FS HK + GP GIG LY+R+ +E + GGG
Sbjct: 205 HLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV 264
Query: 228 -----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
+GT +G+ A L I M+ L + L GL + +
Sbjct: 265 TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL-SELPGVE 323
Query: 282 ING-DMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLEPSYVLRAL 335
I G +R +SFN ++G L+ K IAV +G C + R L
Sbjct: 324 IYGPPDADRGG---IVSFN-VKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLL 373
Query: 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
G ++IR ++ + TE+++D ++ LK
Sbjct: 374 G-----VDATIRASLHLYNTEEDVDRLLEALK 400
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 188 bits (479), Expect = 5e-56
Identities = 112/387 (28%), Positives = 171/387 (44%), Gaps = 39/387 (10%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPRE 60
D +AT+ V+D ++ Y R N H A A E AR +VA+ I A P E
Sbjct: 4 DNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
II+T TE+ NL G K G I+T EH S + ++L G ++ +
Sbjct: 64 IIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
++G + L LE+ + T LV+V V+N +G I P+ EIGE+ GV D AQ+ G
Sbjct: 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH 182
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------EYGL 231
+ +++Q+ D ++FS HK+ GP GIG LY + + GGG E
Sbjct: 183 MPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP-PYGGGGEMIEEVSFEETTY 241
Query: 232 R-------SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
+GT +G+G A L +I M+ L L I + +
Sbjct: 242 ADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL-SEIPGVRVY 300
Query: 284 GDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCND 339
GD +R +SFN I + + IAV +G C +P ++R LG
Sbjct: 301 GDAEDRAG---VVSFNLEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG--- 348
Query: 340 ELAHSSIRFTIGRFTTEKEIDFTIKLL 366
++R + G + TE+EID ++ L
Sbjct: 349 --VPGTVRASFGLYNTEEEIDALVEAL 373
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 171 bits (435), Expect = 1e-49
Identities = 120/404 (29%), Positives = 186/404 (46%), Gaps = 71/404 (17%)
Query: 2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
D +ATT P V + M + + G+P + A + +E+ R +A+L A
Sbjct: 4 DNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA 63
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
+++T+ AT + N+A+KG K G H+IT EH SV + L+ G +T +K
Sbjct: 64 HVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC 119
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
N GLI+ +++ I ++T L+ V +N G I PI EIGEL + G+ F DAAQ G
Sbjct: 120 DNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAG 179
Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG------- 230
I I++ +D+++F+ HK + GP+G G LYIR +++ GG +
Sbjct: 180 VIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG--IKLKPLKSGGTGSHSALIDQPS 237
Query: 231 -----LRSGTLATHQIVGMGEA------FRLARIEMKEELKRILFLQKRLYNGLMESIEE 279
SGTL T I G+ +A I KE + L ++L NGL E I +
Sbjct: 238 ELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECM-----LTEKLLNGLRE-INK 291
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGES------LLMAIKDIAVSSGSACTSASLEPSYV 331
+ I G + NR+ +SF +EG +L DIA +G C
Sbjct: 292 VKIYGPADPANRVG---VVSFT-VEGIDSEEVADILDEKFDIATRTGLHCAP-------- 339
Query: 332 LRALGCNDELAHSS--------IRFTIGRFTTEKEIDFTIKLLK 367
LAH + IR ++G F TE+EI+ ++ L
Sbjct: 340 ---------LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 151 bits (383), Expect = 9e-42
Identities = 110/393 (27%), Positives = 173/393 (44%), Gaps = 38/393 (9%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T P+ V+D + Y R N H A +A E R +VA+ I A EI
Sbjct: 24 SAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEI 83
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN 120
++T G TES NL K G I+ + EH + + + L E G + ++ +
Sbjct: 84 VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD 143
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+G + L LE+ + T LV++ V+N +G + P+ EI +L G D AQAV +
Sbjct: 144 DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM 203
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------HE------ 228
+++Q D FS HK+YGP GIG LY + ++ + GG E
Sbjct: 204 PVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNE 263
Query: 229 --YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285
+ +GT ++G+G A L I ++ L L E I + I G
Sbjct: 264 APHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGP 322
Query: 286 MNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
+ + ISFN +EG ++ + IAV SG C +P ++R G
Sbjct: 323 RDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP--LMRRFG---- 370
Query: 341 LAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
++ R + + TE++ID ++ LK KV+K
Sbjct: 371 -VPATCRASFYIYNTEEDIDALVEALK-KVRKF 401
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 398
Score = 95.3 bits (237), Expect = 1e-21
Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T + P+ V+D + R+ G H + E AR +VA+ + A D I
Sbjct: 22 SAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI 81
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
+WT G TES NL + A + G II + EH + L I L + G +V L
Sbjct: 82 VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--IPWLMVAQQTGAKVVKLPI 139
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ L + QL E + T ++++ ++N G + L G + D AQ V
Sbjct: 140 GADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV 199
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
++Q +D +FS HK+YGP GIG LY
Sbjct: 200 HGPPDVQALDIDFYAFSGHKLYGPTGIGVLY 230
>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional.
Length = 401
Score = 94.3 bits (235), Expect = 3e-21
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 7/211 (3%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T + P+ V++ + + GN E AR +VAQL+ A D + I
Sbjct: 25 SAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNI 84
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
+WT G TES NL + A + G II + EH + L + L + G +V L
Sbjct: 85 VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--VPWLMVAQQTGAKVVKLPL 142
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ L + L E I T ++++ ++N G + L G++ D AQ
Sbjct: 143 GADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAV 202
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
++Q +D +FS HK+YGP GIG LY
Sbjct: 203 HFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233
>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine
desulfurase.
Length = 424
Score = 93.3 bits (232), Expect = 7e-21
Identities = 105/402 (26%), Positives = 173/402 (43%), Gaps = 41/402 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +AT+ V+D + Y N H A A E AR +VA I A R
Sbjct: 36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSR 95
Query: 60 EIIWTSGATESNNLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYL 116
EI++T ATE+ NL G A+ K G +I EH S + + + + G + ++
Sbjct: 96 EIVFTRNATEAINLVAYTWGLANL--KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFV 153
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
+ ++ + QL+E + T LV+ V+N +G I P+ +I + G DA Q+
Sbjct: 154 GLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQS 213
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---------GH 227
V + +++Q D + S+HK+ GP GIG L+ + + + + GG
Sbjct: 214 VPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHS 273
Query: 228 EYG-----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
Y +GT A + +G+G A L+ I M + + L LY L S+ +
Sbjct: 274 TYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKL-SSVPGVR 332
Query: 282 INGDMNNRIPHNLNI-SFNFIEG------ESLLMAIKDIAVSSGSACTSASLEPSYVLRA 334
I G + + +FN +EG + L +A+ SG C +P + R
Sbjct: 333 IYGPKPSEGVGRAALCAFN-VEGIHPTDLSTFLDQQHGVAIRSGHHCA----QPLH--RY 385
Query: 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL 376
LG N A +S+ F + T++E+D I LK +
Sbjct: 386 LGVNAS-ARASLYF----YNTKEEVDAFIHALKDTIAFFSSF 422
>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
desulfurase/selenocysteine lyase; Validated.
Length = 406
Score = 90.6 bits (225), Expect = 5e-20
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 39 AEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
A + +E R + A I A E+++ G TE NL + + G +II + EH
Sbjct: 65 ATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHH 124
Query: 98 SVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
+ + + L G + + +G + L L T L+++ V+N +G P+
Sbjct: 125 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLA 184
Query: 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR 212
E+ L G D AQAV +++Q D FS HK+YGP GIG LY++
Sbjct: 185 EMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 82.5 bits (204), Expect = 2e-17
Identities = 88/399 (22%), Positives = 154/399 (38%), Gaps = 55/399 (13%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D A T I V D + L + + A++ ++ AR VA L+ ADP E
Sbjct: 21 FDNPAGTQIPQSVADAVSAALT-RSNANRGGAYESSRRADQVVDDAREAVADLLNADPPE 79
Query: 61 IIWTSGATESNNLAIKGAAHFYK--KRGKHIITVQTEHKSVLDS-IRKLENDG--FRVTY 115
+++ + AT L + + G +I + +H++ + ++ E G +
Sbjct: 80 VVFGANATS---LTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWAR 136
Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ L L + T LV+V +N +G I + I EL + G + DA
Sbjct: 137 VDEATGELHP-DDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH 195
Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN----------------PRTRIE 219
I++Q D ++ SA+K +GP +G L+ R R E
Sbjct: 196 YAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFE 254
Query: 220 AQIHGGGHEYGLRSGTLATHQ-IVGMGE-AFRLARIEMKEELKRILFLQKRLYNGLMESI 277
G +Y L +G +A + G+GE A R + + I + RL L+ +
Sbjct: 255 L----GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGL 310
Query: 278 EE-----IYINGDMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLE 327
+ +Y + R+P +SF + G +A + I +G
Sbjct: 311 SDLPGVTLYGVARLAARVP---TVSFT-VHGLPPQRVVRRLADQGIDAWAGHFYAVR--- 363
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366
+LR LG NDE +R + + T +E+D ++ L
Sbjct: 364 ---LLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 67.4 bits (165), Expect = 2e-13
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
++ T +N A+ G +I H S E G + + +
Sbjct: 20 AVFVPSGTGANEAAL----LALLGPGDEVIVDANGHGSRYWVAA--ELAGAKPVPVPVDD 73
Query: 121 N--GLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
G + ++ LEE + L+ + GV+ P+ EI ++ + G++ DAA A
Sbjct: 74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG 133
Query: 178 GKIDIN---IQNYKVDLMSFSAHKIYGPKGIGALYIR 211
G I D+++FS HK G +G G + ++
Sbjct: 134 GASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 65.1 bits (159), Expect = 2e-11
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRV 113
TSG TE+N LA+ A + K+ I+ +T H S + R L G +
Sbjct: 125 TSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGL 181
Query: 114 TYLK-PKNNGLITLSQLEEKICSDTILVSVMLV--NNEIGVIQPILEIGELCRSKGVIFH 170
+ + I + LEE I +TI V+ + G I I E+ ++ G+ H
Sbjct: 182 RRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLH 241
Query: 171 CDAA---QAV------GKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA 220
DAA + G+ D ++ VD ++ HK P G G + R+
Sbjct: 242 VDAAFGGFLLPFLEPDGRWDFGLEG--VDSITVDGHKYGLAPIGCGVVLF-RDEEALRRI 298
Query: 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA 251
I +Y L G + I+G +
Sbjct: 299 LIF---ADYYLPGGGIPNFTILGSRPGRQAL 326
>gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent
enzyme EgtE. Members of this protein family are the
pyridoxal phosphate-dependent enzyme EgtE, which
catalyzes the final step in the biosynthesis of
ergothioneine [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 370
Score = 59.9 bits (145), Expect = 6e-10
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVI 168
GF V L ++G + + + +D LV + +V + G +QP + ELCR+ GV
Sbjct: 116 GFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRGTVQPAAAVAELCRAAGVP 175
Query: 169 FHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH 227
DAAQA+G +D D S+ K + GP+G+G L +R R+ ++
Sbjct: 176 LVVDAAQALGHLDC---AVGADAYYSSSRKWLAGPRGVGVLAVRPELLERLAPRLPPPDW 232
Query: 228 EYGLRSGTLATHQIVGMGEAFRLARI 253
+ LA Q + GEA AR+
Sbjct: 233 P---EASPLAVAQRLEHGEANIAARV 255
>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase.
This family includes a number of 2-aminoethylphosphonate
aminotransferases, some of which are indicated to
operate in the catabolism of 2-aminoethylphosphonate
(AEP) and others which are involved in the biosynthesis
of the same compound. The catabolic enzyme (PhnW, ) is
known to use pyruvate:alanine as the transfer partner
and is modeled by the equivalog-level TIGR02326. The
PhnW family is apparently a branch of a larger tree
including genes (AepZ) adjacent to others responsible
for the biosynthesis of phosphonoacetaldehyde. The
identity of the transfer partner is unknown for these
enzymes and considering the reversed flux compared to
PhnW, it may very well be different.
Length = 355
Score = 55.5 bits (134), Expect = 2e-08
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHC 171
T L L+++EE + +D + V V++E G++ P+ I ++ RS G +
Sbjct: 101 TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIV 160
Query: 172 DAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
DA + G I I+I+ VD + SA+K + G G G + RR
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARR 202
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 54.9 bits (133), Expect = 2e-08
Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 46/183 (25%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKH----------IITVQTEHKSV-------LDSIR 104
++TSG +ESN LA+ A +KR K I+ H SV +R
Sbjct: 61 VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVR 120
Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEI 158
+ D +G + LE I D I+V + G I P+ EI
Sbjct: 121 LVPVDE----------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 159 GELCRSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG--PKGIGAL 208
+L + H DAA + D I+ VD +S HK YG P G A+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISVDPHK-YGLVPLGCSAV 227
Query: 209 YIR 211
+R
Sbjct: 228 LVR 230
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 53.9 bits (130), Expect = 5e-08
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 64 TSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
SG TE+N A++ A + +KR +II ++ H S + E G + Y +
Sbjct: 82 VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF---EKAAEMLGLELRYAPLDED 138
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
+ + +E+ I +TI + + E+G I I E+ ++ G+ H DAA
Sbjct: 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA 191
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 51.1 bits (123), Expect = 5e-07
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+ ++EE + D + +V +V+NE GV+ P+ EI + + G + DA ++G
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176
Query: 182 INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-----------GHEY 229
+ + + +D+ + K + P G+ + + IE + H +
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236
Query: 230 GLRSGTLATHQIVGMGEAFRLARIEMKEE 258
G T + I + EA L + EE
Sbjct: 237 GSTPYTPPVNLIYALREALDL----ILEE 261
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 50.3 bits (121), Expect = 8e-07
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD-SIRKLE-NDGFRVTY 115
TSG TE+N A++ A + K +I+ ++ H S +L +R+ +D +RV
Sbjct: 82 TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD- 140
Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
+ +E+ I +TI + + E+G + PI E+ ++ G+ H DAA
Sbjct: 141 ----------VKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 49.6 bits (119), Expect = 1e-06
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 43/196 (21%)
Query: 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93
+YG + +A+L ++ T++N LA+ AAH + G+ +I +
Sbjct: 30 VYG--EDPTTNALEQRIAELF--GKEAALFVPSGTQANQLAL--AAHC--QPGESVICHE 81
Query: 94 TEH--------KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------L 139
T H +KL + P +G +T +E I D I L
Sbjct: 82 TAHIYTDECGAPEFFGGGQKL--------PIVPGADGKLTPEDVEAAIRPDDIHHAPTPL 133
Query: 140 VSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDL 191
+ E G + P + I +C+ G+ H D A+ A+ + + ++ K VD
Sbjct: 134 AVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDS 193
Query: 192 MSFSAHKIYGPKGIGA 207
+SF KG GA
Sbjct: 194 VSFC-----LTKGGGA 204
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 48.4 bits (116), Expect = 3e-06
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V ++ ++ ++ E + I +V L +NE GV+ P+ IG L +
Sbjct: 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI-KAVTLTHNETSTGVLNPLEGIGALAKKHDA 155
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQ----- 221
+ DA ++G + + VD+ + K G P G+G + RI+ +
Sbjct: 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKG 215
Query: 222 ----IHGGGHEYGLRSGTLAT---HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274
+ +G T + + + EA L +E L+ +RL L
Sbjct: 216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL---EEGLENRWARHRRLAKALR 272
Query: 275 ESIEEI 280
E +E +
Sbjct: 273 EGLEAL 278
>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase.
Aminoacylation of tRNA(Cys) with Cys, and cysteine
biosynthesis in the process, happens in
Methanocaldococcus jannaschii and several other archaea
by misacylation of tRNA(Cys) with O-phosphoserine (Sep),
followed by modification of the phosphoserine to
cysteine. In some species, direct tRNA-cys
aminoacylation also occurs but this pathway is required
for Cys biosynthesis. Members of this protein catalyze
the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 42.1 bits (99), Expect = 3e-04
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 102 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
+++++ + G + P+ G + + ++E++ +L + V+ E G + ++ ++
Sbjct: 113 NVKEVPHTGHPEYKVDPEGYGEV-IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171
Query: 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK---IYGPKGI 205
CR KGV + A VG++ ++ + D + S HK GP G+
Sbjct: 172 CREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 41.1 bits (97), Expect = 5e-04
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTI-------LVSVMLVNNEIG--VIQP--ILEI 158
G + L G + L LE I L+S+ +N G V+ + EI
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREI 154
Query: 159 GELCRSKGVIFHCD------AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGAL---- 208
+ R G+ H D AA A+G I I +Y D +S S K G +G++
Sbjct: 155 RAIAREHGIPLHLDGARLANAAVALGVIVKEITSY-ADSVSMSLSKGLG-APVGSVLAGS 212
Query: 209 --YIRRNPRTRIEAQIHGGGHEYGLR-SGTLATHQIVGMGE-AFRLAR-IEMKEELKRIL 263
+I R R + GG G+R +G LA + + E RL R L L
Sbjct: 213 DDFIAYARRQR---KYLGG----GMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEGL 265
>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
Length = 805
Score = 41.8 bits (98), Expect = 5e-04
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 25 FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFY 82
+GNP S++ +++ IE AR +V + A P + ++TSGAT + L + G +
Sbjct: 63 YGNPHSQSDSSMRSSD-TIESARQQVLEYFNAPPSDYACVFTSGATAA--LKLVGETFPW 119
Query: 83 KKRGKHIITVQTEHKSVLDSIRK--LENDG------FRVTYLKPKNNGL---ITLSQLEE 131
T++ H SVL IR+ LE +P N+ + L+
Sbjct: 120 SSESHFCYTLEN-HNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQR 177
Query: 132 KICS---------DTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFH--------CDA 173
+ S + L + N G P+ + + ++ F DA
Sbjct: 178 RNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGG 226
A+ G ++ Y D + S +KI+G P G+GAL +RR+ ++ + GGG
Sbjct: 238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGG 291
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 40.5 bits (96), Expect = 0.001
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 79 AHFYKKRGKHII--TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD 136
A KR K ++ V E++ VL + L+ G V + P +G+ L LE + D
Sbjct: 148 AVRITKRKKVLVSGAVHPEYREVLKTY--LKGQGIEVVEV-PYEDGVTDLEALEAAVDDD 204
Query: 137 TILVSVMLVN-NEIGVIQPILEIGELCRSKGVIF 169
T +V++ N GVI+ + EI E+ + G +F
Sbjct: 205 T--AAVVVQYPNFFGVIEDLEEIAEIAHAGGALF 236
>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 38.6 bits (90), Expect = 0.004
Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 103 IRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162
+ ++ N G+ + P+ + +++++ L + V+ E G + ++ ++C
Sbjct: 124 VAEVPNTGYPEYKITPEGYAE-VIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKIC 182
Query: 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGI 205
R GV + A VG++ ++ + D + S HK P G+
Sbjct: 183 REYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGV 228
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 37.6 bits (88), Expect = 0.008
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 35 YGWTAEKAIEKA---RNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 89
YGW IE + + VA L Y P I+ T+GAT +N L + + G H+
Sbjct: 58 YGW-----IEGSPEFKEAVASL-YQNVKPENILQTNGATGANFLVLYALV----EPGDHV 107
Query: 90 ITV----QTEHKSVLDSIRKLENDGFRVTY--LKPKNNGLITLSQLEEKICSDTILVSVM 143
I+V Q + + +S+ G V Y LK +N L L +L + +T L+ +
Sbjct: 108 ISVYPTYQ-QLYDIPESL------GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICIN 160
Query: 144 LVNNEIGVI--QPIL-EIGELCRSKGVIFHCD 172
NN G + + L EI E+ RS D
Sbjct: 161 NANNPTGALMDRAYLEEIVEIARSVDAYVLSD 192
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 37.2 bits (87), Expect = 0.012
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGV 167
G L + +++E + +D + V LV+ E G++ P+ EI + + G
Sbjct: 103 GIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGK 162
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
DA + G I I+I +D + SA+K I G G G + RR
Sbjct: 163 RLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARR 208
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life.
Length = 398
Score = 37.2 bits (87), Expect = 0.014
Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 56/198 (28%)
Query: 78 AAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKPKNNGLITLSQLEEKICSD 136
A Y KR K ++ + H + R + E G V + G + L L+E++ +
Sbjct: 101 AIRAYHKRNK-VLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159
Query: 137 TILVSVMLVN-NEIGVI-QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ------NYK 188
++M+ N +GV I EI ++ S G + + D ++N+ Y
Sbjct: 160 V--AALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGD------NLNLTGLKPPGEYG 211
Query: 189 VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ-------- 240
D++ + K P HGGG G +G A +
Sbjct: 212 ADIVVGNLQKTGVP--------------------HGGG---GPGAGFFAVKKELVRFLPG 248
Query: 241 -IVGMGE------AFRLA 251
+VG+ + AFRLA
Sbjct: 249 RLVGVTKDAEGNRAFRLA 266
>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated.
Length = 481
Score = 37.0 bits (87), Expect = 0.017
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
GF+V + +GL+ L L+ + DT ++ML N N +G+ + ILEI E+ G
Sbjct: 182 GFKVVEIPSNEDGLVDLEALKAAVGEDT--AALMLTNPNTLGLFERNILEIAEIVHEAGG 239
Query: 168 IFHCDAAQA---VGKI---DINIQNYKVDLMSFSAHK 198
+ + D A +GK D+ D++ + HK
Sbjct: 240 LLYYDGANLNAILGKARPGDMG-----FDVVHLNLHK 271
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 36.5 bits (85), Expect = 0.021
Identities = 41/183 (22%), Positives = 62/183 (33%), Gaps = 33/183 (18%)
Query: 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK----RGKHII 90
YG + K A+L ++ T +N LA+ HI
Sbjct: 28 YG--EDPTTAKLEARAAELF--GKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIY 83
Query: 91 TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVM 143
T + L ++ L G NG +T LE I LVS +
Sbjct: 84 TDEAGAPEFLSGVKLLPVPG---------ENGKLTPEDLEAAIRPRDDIHFPPPSLVS-L 133
Query: 144 LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDLMSFS 195
E G + P + I L + G+ H D A+ A + + ++ YK VD +SF
Sbjct: 134 ENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFC 193
Query: 196 AHK 198
K
Sbjct: 194 LSK 196
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 36.1 bits (84), Expect = 0.029
Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 35/255 (13%)
Query: 45 KARNEVAQLIYADP-------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
+ R +A+ + P +++ SGA N A+ I+ +
Sbjct: 45 ELREALAKFLGRSPVLKLDREAAVVFGSGAGA-NIEALIFLLRLNPGDA--ILVPAPTYP 101
Query: 98 SVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKICSDTILVSVMLVN---NEIGVIQ 153
S + R G V Y L N+ + LE + T V+L N G +
Sbjct: 102 SYIRIFRL--AGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVA 159
Query: 154 P---ILEIGELCRSKGVIFHCDAAQAVG--------KIDINIQNYKVDLMSFSAHKIYGP 202
+ ++ +L + ++ D A A + L+ S K +G
Sbjct: 160 TLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGL 219
Query: 203 KG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260
G +G + +++ ++ + S T L E++E +
Sbjct: 220 AGWRVGYILGNAAVISQL-RKLARPFY-----SSTHLQAAAAAALSDPLLVASELEEMRQ 273
Query: 261 RILFLQKRLYNGLME 275
RI + L +GL
Sbjct: 274 RIKERRDYLRDGLEA 288
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli [Central
intermediary metabolism, Phosphorus compounds].
Length = 363
Score = 35.5 bits (82), Expect = 0.037
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 125 TLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 182
+ ++E + +D + + LV+ E G++ PI + +L G + DA + G I I
Sbjct: 116 DVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPI 175
Query: 183 NIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
+I +D + SA+K I G G G + R+
Sbjct: 176 DIAELHIDYLISSANKCIQGVPGFGFVIARQ 206
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which ligates
O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
SepCysS forms a dimer, each monomer is composed of a
large and small domain; the larger, a typical pyridoxal
5'-phosphate (PLP)-dependent-like enzyme fold. In the
active site of each monomer, PLP is covalently bound to
a conserved Lys residue near the dimer interface.
Length = 361
Score = 35.1 bits (81), Expect = 0.050
Identities = 48/251 (19%), Positives = 91/251 (36%), Gaps = 34/251 (13%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-------IRKLENDGFRVTYL 116
T GA E H ++G ++ H + + +R++ N G ++
Sbjct: 65 TPGARE----GKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHI 120
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVML---VNNEIGVIQPILEIGELCRSKGVIFHCDA 173
P+ +EE ++ L V+ G + +I ++C GV +
Sbjct: 121 TPEG----YAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNG 176
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGIGALYIRRNPRTRIEAQIHGGGHEYG 230
A VG++ ++ + D + S HK P G+ A +Q+ E
Sbjct: 177 AYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMF-KIKEVE 235
Query: 231 LRSGTLATHQIVGMGEAFR--LARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN 287
L TL +V + +F R++ EE+++ + +E IE I G+
Sbjct: 236 LLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAE-----LEKIEGIKQLGEK- 289
Query: 288 NRIPHNLNISF 298
P N ++ F
Sbjct: 290 ---PKNHDLMF 297
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 34.6 bits (80), Expect = 0.077
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93
++ + AIE A +A L D + +T+G +E+ A K A ++K GK
Sbjct: 89 LWSYAHPPAIELA-ERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKP----- 142
Query: 94 TEHK 97
+HK
Sbjct: 143 GKHK 146
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 34.0 bits (78), Expect = 0.12
Identities = 41/183 (22%), Positives = 74/183 (40%), Gaps = 15/183 (8%)
Query: 48 NEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH----KSVLDSI 103
+++A LI A E++ T T S NL AA + G+ +I + ++ + + +
Sbjct: 83 DKLAPLIGARAGEVVVTD--TTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGL 140
Query: 104 RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 163
L G+ + G+I LEE I D +V + VN + G + + I L
Sbjct: 141 ADLLGIGYDLE-------GVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAH 193
Query: 164 SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQ 221
G + D A + G + +++ D ++K GP L++ R R
Sbjct: 194 QHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPP 253
Query: 222 IHG 224
+ G
Sbjct: 254 LSG 256
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 34.2 bits (79), Expect = 0.12
Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 23/177 (12%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQ-------LIYADPRE 60
P +++ I A +T I + R +A+ L E
Sbjct: 41 PTPEHIIEAAIE---------ALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEE 91
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II T+GA E+ LA G ++ + S +++ V + +N
Sbjct: 92 IIVTAGAKEALFLAFL----ALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEEN 147
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAA 174
L LE I T + + NN G + + I EL R +I D
Sbjct: 148 GFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI 204
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 32.7 bits (75), Expect = 0.27
Identities = 43/178 (24%), Positives = 62/178 (34%), Gaps = 36/178 (20%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRKL-EN 108
+ G++ESN LA+ A R K I ++ K L SI K
Sbjct: 107 VLQGGSSESNLLALLAA------RTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALI 160
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSD-----TIL-VSVMLVNNEIGVIQPILEIGELC 162
G + + NG + LE+ I D V L G P+ E+G++C
Sbjct: 161 AGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDIC 220
Query: 163 RSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG-PKGIGALYIR 211
+ H DAA A I+ D SF+ HK AL++R
Sbjct: 221 NKYDLWLHVDAAYAGSAFICPEFRHWLFGIER--ADSFSFNPHKWMLVLLDCSALWVR 276
>gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism
/ Amino acid transport and metabolism].
Length = 365
Score = 33.0 bits (76), Expect = 0.28
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 142 VMLVNNEI-GV-IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 199
N I GV + + +IG S G++ DA+ A+ I++ Y D++ A K
Sbjct: 149 HFCWNETISGVEVPELPDIG----SDGLLV-ADASSAILSRPIDVSKY--DVIYAGAQKN 201
Query: 200 YGPKGIGALYIRRNPRTRIE 219
GP G+ + +R + R E
Sbjct: 202 LGPAGLTVVIVRPDLLERAE 221
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 32.7 bits (75), Expect = 0.33
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 148 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYK--------VDLMSFSAHK- 198
E G I P+ E+ ++ + G FH DAA G + Y+ D ++ AHK
Sbjct: 277 ETGNIDPLDEMADIAQELGCHFHVDAAW--GGATLLSNTYRHLLKGIERADSVTIDAHKQ 334
Query: 199 IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT--LATHQIVG 243
+Y P G G + + ++P + H EY LR G+ L +H + G
Sbjct: 335 LYVPMGAG-MVLFKDPALMSAIEHHA---EYILRKGSKDLGSHTLEG 377
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 32.3 bits (74), Expect = 0.41
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 26/178 (14%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREI 61
P P V++ + + Y + + R +A+ + P EI
Sbjct: 11 PPPPEVLEALA------AAALRAGLLGYYPDP--GLPELREAIAEWLGRRGGVDVPPEEI 62
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY--LKPK 119
+ T+GA E A+ G ++ + + R G V L +
Sbjct: 63 VVTNGAQE----ALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA---GAEVVPVPLDEE 115
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAA 174
L+ L LE T L+ + NN G + + E+ EL + G++ D A
Sbjct: 116 GGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEA 173
>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 31.8 bits (73), Expect = 0.63
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGI 205
++ ++ G+ F + A VG++ ++ + D + S HK P G+
Sbjct: 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGV 230
>gnl|CDD|147133 pfam04822, Takusan, Takusan. This domain is named takusan, which
is a Japanese word meaning 'many'. Members of this
family regulate synaptic activity.
Length = 84
Score = 29.3 bits (66), Expect = 0.74
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296
I+ EELK L L + N L + I ++Y+NG +N R+ I
Sbjct: 16 KNIKELEELKLELRLITQERNELRD-ILDLYMNGSLNYRLNPEYEI 60
>gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), C-terminal domain [Amino acid
transport and metabolism].
Length = 496
Score = 31.5 bits (72), Expect = 0.88
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
GF+V +K NG + L L K + ++M+ N + +GV + I EI E+ G
Sbjct: 178 GFKVVVVKCDENGNVDLDDLRAKAEDNL--AALMITNPSTLGVFEEDIREICEIVHEAGG 235
Query: 168 IFHCDAA 174
+ D A
Sbjct: 236 QVYYDGA 242
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 31.0 bits (70), Expect = 1.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 152 IQPILEIGELCRSKGVIFHCDAAQA 176
+ P+LE+G++ +S G+ FH DAA A
Sbjct: 255 VDPLLELGKIAKSNGMWFHVDAAYA 279
>gnl|CDD|220337 pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha).
Members of this protein family are found in temperate
phage and bacterial prophage regions. Members include
the product of the rha gene of the lambdoid phage
phi-80, a late operon gene. The presence of this gene
interferes with infection of bacterial strains that lack
integration host factor (IHF), which regulates the rha
gene. It is suggested that Rha is a phage regulatory
protein.
Length = 88
Score = 27.9 bits (63), Expect = 2.5
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 95 EHKSVLDSIRKLENDGFRVTYLKPKN 120
HK+VL I L D + + +
Sbjct: 14 RHKNVLRDIENLLEDLKFLNFFIESS 39
>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional.
Length = 397
Score = 29.7 bits (67), Expect = 2.8
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 84 KRGKHIITVQ---TEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILV 140
+ G H+++ Q S+ ++R L G VT + + + + I +T +V
Sbjct: 84 RAGDHLVSSQFLFGNTNSLFGTLRGL---GVEVTMVDATD-----VQNVAAAIRPNTRMV 135
Query: 141 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 172
V + N + + IG LCR +G+++ D
Sbjct: 136 FVETIANPGTQVADLAGIGALCRERGLLYVVD 167
>gnl|CDD|219376 pfam07332, DUF1469, Protein of unknown function (DUF1469). This
family consists of several hypothetical bacterial
proteins of around 140 residues in length. The function
of this family is unknown.
Length = 121
Score = 28.3 bits (64), Expect = 3.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 237 ATHQIVGMGEA-FRLARIEMKEELKRI 262
T Q+ + LA+ E+ EE KR
Sbjct: 8 LTAQVSRLVRTEVELAKAELAEEAKRA 34
>gnl|CDD|187793 cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily
protein Csm5. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein.
Length = 365
Score = 29.4 bits (66), Expect = 3.8
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 242 VGMGEAFRLARIEMKEELKRILFL-QKRLYNGLMESIEEIYINGDMN 287
+G GE + M E RI + ++LY L+E + +GD N
Sbjct: 11 IGNGEEYTPVDYIMHVEGDRIYVIDFEKLYADLLEKKRKDEESGDNN 57
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 29.4 bits (66), Expect = 4.5
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 235 TLATHQIVGMGEAFRLARIEMKEEL--KRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
T A+ Q + GEA R A ++KE L + + L+ + G SI + +N D N + H
Sbjct: 654 TTASRQSLFTGEATRRAAAKLKEALRGRTLAELEGEEFYGEYHSITD-PLNSDKENPVSH 712
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 29.0 bits (65), Expect = 4.7
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL-SQLEE--KICSDTILVSVMLV 145
II+ H S++D +R + +R NN + L +QL+E + L++ V
Sbjct: 125 IISDALNHASIIDGVRLCKAKRYRY-----ANNDMADLEAQLKEARAAGARHRLIATDGV 179
Query: 146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ GVI P+ EI +L + D A G
Sbjct: 180 FSMDGVIAPLDEICDLADKYDALVMVDECHATG 212
>gnl|CDD|227174 COG4837, COG4837, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 106
Score = 27.1 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 104 RKLENDGFRVTYLKPKNNGLIT-LSQLEEKICSDTILVSVMLVNNEI 149
RK N F+ TY+ N L Q EKI D +++V +EI
Sbjct: 38 RKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEI 84
>gnl|CDD|221634 pfam12548, DUF3740, Sulfatase protein. This domain family is found
in eukaryotes, and is typically between 144 and 173
amino acids in length. The family is found in
association with pfam00884.
Length = 144
Score = 27.3 bits (61), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 359 IDFTIKLLKMKVKKLREL 376
ID I+ LK K+K L+E+
Sbjct: 110 IDMEIETLKDKIKNLKEV 127
>gnl|CDD|200535 cd11274, Sema_plexin_A4, The Sema domain, a protein interacting
module, of Plexin A4. Plexin A4 forms a receptor
complex with neuropilins (NRPs) and transduces signals
for class 3 semaphorins in the nervous system. It
regulates facial nerve development by functioning as a
receptor for Sema3A/NRP1. Both plexins A3 and A4 are
essential for normal sympathetic development. They
function both cooperatively, to regulate the migration
of sympathetic neurons, and differentially, to guide
sympathetic axons. Plexin A4 is also expressed in
lymphoid tissues and functions in the immune system. It
negatively regulates T lymphocyte responses. The Sema
domain is located at the N-terminus and contains four
disulfide bonds formed by eight conserved cysteine
residues. It serves as a ligand-recognition and -binding
module.
Length = 473
Score = 28.4 bits (63), Expect = 8.1
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 266 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL----MAIKDIAVSS 317
QKR L ES I++ ++N+RI L + GE L + +KDI SS
Sbjct: 305 QKRKMKSLDESALCIFVLKEINDRIKDRLQSCY---RGEGTLDLAWLKVKDIPCSS 357
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 28.3 bits (63), Expect = 9.5
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGW 37
++P V D + Y+R++ S N+I GW
Sbjct: 374 KSLNP-VTDCDLTYIRIEDTQTFSLNNISGW 403
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,527,134
Number of extensions: 2037191
Number of successful extensions: 2011
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1939
Number of HSP's successfully gapped: 75
Length of query: 397
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 298
Effective length of database: 6,546,556
Effective search space: 1950873688
Effective search space used: 1950873688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)