RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8850
(397 letters)
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 762 bits (1971), Expect = 0.0
Identities = 262/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 206 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSF 324
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 325 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
ID+TI+L++ + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 385 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 698 bits (1805), Expect = 0.0
Identities = 155/382 (40%), Positives = 256/382 (67%), Gaps = 7/382 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
DY++ P+D R+++ M+PY+ FGNP+S H YG+ A +A+++AR +VA+L+
Sbjct: 4 FDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGT 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
+++TSGATE+NNLAI G A ++GKHI+ EH SV++ + L+ GF V Y+
Sbjct: 63 VVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + +S +++K+ DTILVSV NNEIG IQP+ EI E+ K H DA +VG+I
Sbjct: 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI 181
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++++ D+++ S++ IYGPKG+GAL+IR+ +++ I GGG E GLRSG+
Sbjct: 182 EVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPS 239
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG G+A + +E +EE +R+ L+ R+ + +++ IEE Y+NG R+P+N+N+ F++
Sbjct: 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSY 298
Query: 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGES+++++ I S+GSAC+S +L+PS+VL A G E AH ++ T+GR+ T+++
Sbjct: 299 IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358
Query: 359 IDFTIKLLKMKVKKLRELSPLW 380
+D +++L +++LR +SPL+
Sbjct: 359 VDRLLEVLPGVIERLRSMSPLY 380
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 684 bits (1767), Expect = 0.0
Identities = 146/384 (38%), Positives = 223/384 (58%), Gaps = 9/384 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++MI + R ++GNP S H G A +EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+M NNE+G IQP+ ++ + + K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K + L+ +L +GLM +I + +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSF 299
Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L I VS+ SACTS +VL A+G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLKMKVKKLRELSPLW 380
+E+D+ +K ++ + L
Sbjct: 360 EEVDYFLKKIEEILSFLDLTGNNR 383
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 633 bits (1636), Expect = 0.0
Identities = 127/410 (30%), Positives = 205/410 (50%), Gaps = 38/410 (9%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDY+ATTP++P V+ + ++ +GNP S +++ G A+ I AR +A++I P++
Sbjct: 22 MDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMIGGKPQD 80
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-----------------KHIITVQTEHKSVLDSI 103
II+TSG TESNNL I + ++ H IT EH S+ +
Sbjct: 81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL 140
Query: 104 RKL-ENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
L E+ VT++ K NG + + + + T LV++ML NNE GVI PI EI
Sbjct: 141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRR 200
Query: 162 CRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
++ V+ H DAAQA+GK +++++ VD ++ HK YGP+ IGALY+R
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259
Query: 212 RNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270
+ T + + GGG E R GT T I G+G+A L + + ++ L
Sbjct: 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319
Query: 271 NGLMESI-EEIYINGDMN--NRIPHNLNISFNFIEGES--LLMAIKDIAVSSGSACTSAS 325
L + I++N R+P+ N S + +L + + S G++C S
Sbjct: 320 ERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDH 379
Query: 326 LE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374
+ PS VL + G ++A +++R ++GR TT E+D ++ LK V +L
Sbjct: 380 EDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 154 bits (392), Expect = 1e-43
Identities = 51/377 (13%), Positives = 122/377 (32%), Gaps = 43/377 (11%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIW 63
+ ++ + + N++ + + D
Sbjct: 17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARV 74
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNN 121
T+GA E+ + K+ ++ + H S + E G + + +
Sbjct: 75 TNGAREAKFAVMHS----LAKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYPD 127
Query: 122 GLITLSQLEEKICSDT-----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
IT + I +L + + G + + +I ++C V + A A
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHG----GGHEYGL 231
+G++ ++++ D + S HK G IG + ++ E + E L
Sbjct: 188 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVEL 244
Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291
T I+ + +F R +K + + ++ ME + + + P
Sbjct: 245 LGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE--MEKLGIKQLGDN-----P 297
Query: 292 HNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351
HN ++ F E + +I+ + E L++ + + F +
Sbjct: 298 HNHDLMFFHAEV------LYEISKKAKGGRFFLYRE----LKSRKIHGIKPGLTRYFKLS 347
Query: 352 RF-TTEKEIDFTIKLLK 367
+ +++E+D+ + K
Sbjct: 348 TYGLSDEEVDYVLNAFK 364
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 150 bits (382), Expect = 5e-42
Identities = 72/409 (17%), Positives = 134/409 (32%), Gaps = 71/409 (17%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
++ + ++ + N ++ I + R +A+ DP I
Sbjct: 21 NFGGQGILPTVALEAITAMYGYLQENGPFSIAANQH-IQQLIAQLRQALAETFNVDPNTI 79
Query: 62 IWTSGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLK 117
T T ++ +G I+ EH ++ +I +R +
Sbjct: 80 TITDNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 135
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC----DA 173
N + L + T LV + + G + P+ EI +CR + D
Sbjct: 136 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 195
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGG------ 226
AQ+ G + ++ +VD +F+ HK GP G+G LYI + I G
Sbjct: 196 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 255
Query: 227 -------HEYGLR--SGTLATHQIVGMGEAFR-LARIEMKEEL-KRILFLQKRLYNGLME 275
E G R T A Q G+ A + R EE + I + L+ GL +
Sbjct: 256 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315
Query: 276 SIEEIYINGDMNNRIPHNLNISFNFIEG----ESLLMAI--KDIAVSSGSACTSASLEPS 329
+ ++ + +SF ++ +++ + + I +
Sbjct: 316 -LPHVHCLATSAPQAG---LVSFT-VDSPLGHRAIVQKLEEQRIYL-------------- 356
Query: 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378
R + IR T E+EI+ L + +L + P
Sbjct: 357 ---RTIA-----DPDCIRACCHYITDEEEIN---HL----LARLADFGP 390
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 134 bits (340), Expect = 9e-36
Identities = 100/406 (24%), Positives = 164/406 (40%), Gaps = 60/406 (14%)
Query: 2 DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
D +AT+ P V++K++ Y N H A A E RN+VA+ I A P
Sbjct: 33 DNAATSQKPR--AVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP 90
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
REI++T ATE+ NL K G IIT EH S ++ + G
Sbjct: 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHS---NLVPWQMVAAKT----G 143
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
+ +++ L + + T LV+V+ ++N +G + P EI +L G
Sbjct: 144 AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203
Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGG-- 226
DA Q+ +++Q D + S HK+ P GIG LY + +EA GGG
Sbjct: 204 VDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE---ILEAMPPFFGGGEM 260
Query: 227 ----HEYG---------LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNG 272
+GT A + + +G A L + M+ + L L+ G
Sbjct: 261 IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG 320
Query: 273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLE 327
L + I ++ + G SFN + G + ++ IA+ SG CT +
Sbjct: 321 LGQ-IPQLRLYGPNPKHGDRAALASFN-VAGLHASDVATMVDQDGIAIRSGHHCT----Q 374
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
P + R + S R ++ + T++EID ++ L+ +
Sbjct: 375 P--LHRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQ-ATIRF 412
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 130 bits (328), Expect = 3e-34
Identities = 62/404 (15%), Positives = 130/404 (32%), Gaps = 69/404 (17%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
D A I V + R + H + ++ AR VA L+ ADP +
Sbjct: 31 DAPAGMLIPDSVATTVSTAFRRSGASTVGA-HPSARRSAAVLDAAREAVADLVNADPGGV 89
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK-PK 119
+ + +L + ++ G +I + + ++ + + G +V + +
Sbjct: 90 VLGADRAVLLSLLAEASSSRAGL-GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI 148
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
G + Q E I T LV+V + +G + + + +L G + D + A
Sbjct: 149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY 208
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR---------------NPRTRIEAQIHG 224
++I+ D+++ +AH GP ++ R+E
Sbjct: 209 RLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEI---- 264
Query: 225 GGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF--------------LQKRL 269
G + G+ + LA ++ R + L
Sbjct: 265 ---------GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYL 315
Query: 270 YNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDI-AVSSGSACTS 323
L S+ + + G +IP +SF + +A I A+++ +
Sbjct: 316 MVSL-RSLPLVMLIGRPEAQIP---VVSFA-VHKVPADRVVQRLADNGILAIANTGSRV- 369
Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
VL ++ + ++T E+D ++ L
Sbjct: 370 ---LD--VLGVNDVG-----GAVTVGLAHYSTMAEVDQLVRALA 403
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 126 bits (318), Expect = 1e-32
Identities = 87/407 (21%), Positives = 153/407 (37%), Gaps = 65/407 (15%)
Query: 2 DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
D +A+ P +V+D + R + H A + +E R + I A
Sbjct: 28 DSAASAQKPS--QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
E+++ G TE NL + + G +II Q EH + +I R G
Sbjct: 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHA---NIVPWQMLCARV----G 138
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
+ + +G + L L T L+++ V+N +G P+ E+ L G
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGH- 227
D AQAV +++Q D FS HK+YGP GIG LY++ ++ GGG
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA---LLQEMPPWEGGGSM 255
Query: 228 ----EYGLRS-----------GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYN 271
+ GT T I+G+G A ++ + + + L +
Sbjct: 256 IATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS 315
Query: 272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASL 326
L + ++ + G N I+FN + + IAV +G C
Sbjct: 316 QLES-VPDLTLYGPQN----RLGVIAFN-LGKHHAYDVGSFLDNYGIAVRTGHHCA---- 365
Query: 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
P ++ + R ++ + T +E+D + L+ ++ +L
Sbjct: 366 MP--LMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQ-RIHRL 404
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 100 bits (251), Expect = 1e-23
Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 48/334 (14%)
Query: 12 RVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATES 70
+ + + ++GN R+ GW E+ N +A LI A E++ T + +
Sbjct: 43 AALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSIN 100
Query: 71 NNLAIKGAAHFYK------KRGKHIITVQTEHKS---VLDSIRKLENDGFRVTYLKPKNN 121
+ + + I+T + + + + + + G+ + +
Sbjct: 101 LFKV---LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--- 154
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 155 ----PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP 210
Query: 182 INIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGG-GHE---------- 228
+++ D +K GP +++ + + G GH
Sbjct: 211 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE 270
Query: 229 -----YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282
GT + + A+ +M ++ L L + + +
Sbjct: 271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330
Query: 283 N----GDMNNRIPHNLNISFNFIEGESLLMAIKD 312
+ R H +SF EG +++ A+ D
Sbjct: 331 TLVTPREHAKRGSH---VSFEHPEGYAVIQALID 361
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 76.6 bits (188), Expect = 2e-15
Identities = 53/299 (17%), Positives = 101/299 (33%), Gaps = 33/299 (11%)
Query: 12 RVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATES 70
V + L ++ A+ H G E + ++ A+ +EI + T +
Sbjct: 82 MVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140
Query: 71 NNLAIKGAAHFYKKRGKHIITVQTEHKS---VLDSIRKLENDGFRVT-YLKPKNNGLITL 126
+L + KR K I+ S ++S +L + + G TL
Sbjct: 141 LHLLMLSFFKPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL 199
Query: 127 S-----QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
++ EK ++ V+ G I I + ++KG D A AVG ++
Sbjct: 200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE 259
Query: 182 INIQNYKVDLMSFSAHK--IYGPKGIGALYIRRNPRTRIE-AQIHGGGHEY--------- 229
+ + ++ VD + ++K G GI +I I+ A + GHE
Sbjct: 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319
Query: 230 --------GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEE 279
G R + + + + MK K+ + L L + + +
Sbjct: 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGK 378
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 70.5 bits (173), Expect = 2e-13
Identities = 46/315 (14%), Positives = 97/315 (30%), Gaps = 53/315 (16%)
Query: 13 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGAT 68
+ ++P R N K + + L+ SG T
Sbjct: 38 MCSNVLPITRKIVDIFLETNLGD-PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGT 96
Query: 69 ESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
E+N +A++ + ++++ + II T H S + Y K
Sbjct: 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIK 153
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNN----EIGVIQPILEIGELCRSKGVIFHCDAA- 174
+ I +++ + + ++ E+G I I E+ ++ + + H DAA
Sbjct: 154 EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAF 210
Query: 175 ---------QAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 221
K +N + + VD ++ HK + P G + + ++ +
Sbjct: 211 GGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI-LFKDIGYK-RYL 268
Query: 222 IH-----GGGHEYGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG 272
+ + R G L R ++ + + LY
Sbjct: 269 DVDAPYLTETRQATILGTRVG----FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324
Query: 273 LMESIEEIYINGDMN 287
L E+ + I +N
Sbjct: 325 LKENNFKPVIEPILN 339
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 68.9 bits (168), Expect = 6e-13
Identities = 50/319 (15%), Positives = 100/319 (31%), Gaps = 36/319 (11%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG- 122
T +T + AA K +I HKS + ++ + G + ++ +G
Sbjct: 155 TPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGD 210
Query: 123 --LITLSQLEEKICSDTILVSVMLV-----NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ + +E I + L + V I+EI ++C + + + A
Sbjct: 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 176 AVG-----KIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229
A+ + Y+VD + S+ K P G G +Y + E + G
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS-TDAEFIKEISLSYPGRAS 329
Query: 230 GLRS-GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
TL + +G E +K +K L L + + ++
Sbjct: 330 ATPVVNTLVSLLSMG--------SKNYLELVKNQKNSKKLLDELL-NDLSKKTGGKFLDV 380
Query: 289 RIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
P IS N + + + ++ V +G + H I
Sbjct: 381 ESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNCY-----LGTYTHDYIVM 433
Query: 349 TIGRFTTEKEIDFTIKLLK 367
++I ++ L+
Sbjct: 434 NAAIGVRTEDIVNSVSKLE 452
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 59.9 bits (145), Expect = 5e-10
Identities = 49/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLK-P 118
TSG TES LA A + RG II T H + G ++ +++
Sbjct: 132 TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELD 188
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA---- 174
+ L ++++ I +T+L+ N G+ I +G++ + + H D+
Sbjct: 189 PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248
Query: 175 ----------QAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIH 223
+ + +D + V +S HK + PKG + RN R+
Sbjct: 249 IVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMY-RNSDLRMHQYYV 305
Query: 224 G----GGHEY-----GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274
GG G R G + M + E + I+ + +
Sbjct: 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATM---VNMGENGYIESCQEIVGAAMKFKKYIQ 362
Query: 275 ESIEEIYINGD 285
E+I ++ I G+
Sbjct: 363 ENIPDLDIMGN 373
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 59.9 bits (145), Expect = 6e-10
Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
TSG TES LA+K +G + + H + + + G ++
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLD 222
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
+ ++ + E I +T++V+ GV+ PI EI L G+ H DA G
Sbjct: 223 ADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC-LGGF 281
Query: 180 IDINIQNYK------------VDLMSFSAHKI-YGPKGIGALYIR----RNPRTRIEAQI 222
I + V +S HK YG KG + R + + I A
Sbjct: 282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADW 341
Query: 223 HGGGHE----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE 278
GG + G R G L+ M L + +RIL RL G+ +I
Sbjct: 342 PGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIP 397
Query: 279 EIYINGD 285
+ I GD
Sbjct: 398 SLKILGD 404
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 57.9 bits (139), Expect = 2e-09
Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 32/282 (11%)
Query: 122 GLITLSQLEEKICSDTI----LVSVMLVNNEIG----VIQPILEIGELCRSKGVIFHCDA 173
G + +L+E I + + N G + + E+ E+ + G+ D+
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 224
Query: 174 AQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGALYIRRNPRT 216
A+ I YK D ++ SA K G + IR N
Sbjct: 225 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 284
Query: 217 RIEAQIHGGGHEYGLRSGTLATHQIVGM--GEAFRLARIEMKEELKRILFLQKRLYNGLM 274
A+ E + G LA + M G + + ++ +L RL +
Sbjct: 285 FTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI 344
Query: 275 ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRA 334
+ + I + ++++ A + + SG A
Sbjct: 345 PIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINA---LYLESGVRAVEIGSFLLGRDPA 401
Query: 335 LGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRE 375
G +R TI R T +D+ L +K+
Sbjct: 402 TGEQKHADMEFMRLTIARRVYTNDHMDYIADALI-GLKEKFA 442
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 55.3 bits (133), Expect = 2e-08
Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 55/349 (15%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--- 61
T D V M + + + Y +A + N VA L +A +
Sbjct: 50 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAAIDLR-CVNMVADLWHAPAPKNGQA 104
Query: 62 --IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDGF 111
T G++E+ L ++KR + + + +
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW-HKFARYWDVEL 163
Query: 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC------RSK 165
R ++P + ++ E +TI V G + + +
Sbjct: 164 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 222
Query: 166 GVIFHCDAA---------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR---- 211
+ H DAA D + V +S S HK P G G + R
Sbjct: 223 DIDMHIDAASGGFLAPFVAPDIVWDFRLPR--VKSISASGHKFGLAPLGCGWVIWRDEEA 280
Query: 212 RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQ 266
GG + + R Q++ F RL R + +
Sbjct: 281 LPQELVFNVDYLGGQIGTFAINFSRPA----GQVIAQYYEFLRLGREGYTKVQNASYQVA 336
Query: 267 KRLYNGLMES-IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
L + + + E G + IP + F +GE + D++
Sbjct: 337 AYLADEIAKLGPYEFICTGRPDEGIPA---VCFKLKDGEDPGYTLYDLS 382
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 54.1 bits (131), Expect = 3e-08
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 20/182 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G + ++ + +D + + +V++E G++ PI E+G L G
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIG-------ALYIRRNPRTR-- 217
+ DA + G I ++I +D + SA+K I G G L +
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222
Query: 218 --IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL----KRILFLQKRLYN 271
+ AQ +G T TH ++ +A L + + + +R Q+ L
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA--LKELAKEGGVAARHQRYQQNQRSLVA 280
Query: 272 GL 273
G+
Sbjct: 281 GM 282
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 52.8 bits (126), Expect = 1e-07
Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 36/256 (14%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVT 114
T G++E+ LA ++ + K I+T + + +
Sbjct: 123 TVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCW-EKFARYFEVELKEV 181
Query: 115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG------VI 168
L ++ Q + + +TI V+ +L + G + + + +L K
Sbjct: 182 KLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 169 FHCDAA-------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR----RNPRT 216
H DAA +++ + + V ++ S HK GIG + R
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 217 RIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 272
G + L + + Q + RL + ++ L G
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQL---IRLGHEGYRNVMENCRENMIVLREG 357
Query: 273 LMESIEEIYINGDMNN 288
L ++ ++ D
Sbjct: 358 LEKTERFNIVSKDEGV 373
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 51.3 bits (122), Expect = 3e-07
Identities = 54/356 (15%), Positives = 106/356 (29%), Gaps = 53/356 (14%)
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHII---TVQTEHKSVLDS---IRKLENDGFR 112
+ I+ T + NL K G+++ T + + D
Sbjct: 91 KHIVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAH 146
Query: 113 VTYLKPKNNGLITLSQLEEKICSDTI----LVSVMLVNNEIG----VIQPILEIGELCRS 164
L G I L +L++ I + + + N G + + + EL +
Sbjct: 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEA 206
Query: 165 KGVIFHCDAAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGA 207
G+ DA + V I Q ++ D + S K IG
Sbjct: 207 HGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-NIGG 265
Query: 208 LYIRRNP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263
+ + ++ G YG +G +G+ EA + IE +K++
Sbjct: 266 FLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRVKQVR 323
Query: 264 FLQKRLYNGLMESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA 320
+L +L + +E + + D H F + + +
Sbjct: 324 YLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGI 383
Query: 321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRE 375
++ + E +R TI R T +D + K+ + +E
Sbjct: 384 ISAGRNNVTGEHHR--PKLET----VRLTIPRRVYTYAHMDVVADGII-KLYQHKE 432
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 1e-06
Identities = 58/391 (14%), Positives = 118/391 (30%), Gaps = 125/391 (31%)
Query: 38 TAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH 96
E I +++ V+ + WT + + F ++ ++ +
Sbjct: 48 KEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEE-----MVQKFVEE------VLRINY 91
Query: 97 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
K ++ I+ + P + + Q + ++ +D + + V+ QP L
Sbjct: 92 KFLMSPIKTEQRQ--------PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRL----QPYL 138
Query: 157 EI----GELCRSKGVIFH--------CDAAQAVGKIDINIQNYKV-DLMSFSAHKIYGPK 203
++ EL +K V+ A +YKV M F KI+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF---KIF--- 185
Query: 204 GIGALYI----RRNPRTRIE------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
++ +P T +E QI S + +L
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------------KLRIH 228
Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 313
++ EL+R L K N L+ + ++ N N +FN +L+ +
Sbjct: 229 SIQAELRR-LLKSKPYENCLL-------VLLNVQN--AKAWN-AFNL--SCKILLTTRFK 275
Query: 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
V+ L H S+ T ++ +K L + + L
Sbjct: 276 QVT----------------DFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 374 RE----LSPL-----WDMHKEGIDLNTIK-W 394
+P + ++G+ T W
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL--ATWDNW 347
Score = 37.9 bits (87), Expect = 0.006
Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 33/186 (17%)
Query: 7 TPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVA---QLI--YADPRE 60
D VV+K+ Y V+ S I E + K NE A ++ Y P+
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-KLENEYALHRSIVDHYNIPK- 457
Query: 61 IIWTSGATESNNLAIKGA-AHFYKKRGKHIITVQTEHKSVLDSI---------RKLENDG 110
+S++L +FY G H+ ++ + L + +K+ +D
Sbjct: 458 ------TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE-LCRSKGVIF 169
N L L + IC + ++ N I + + +I E L SK
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLV--NAI--LDFLPKIEENLICSK---- 563
Query: 170 HCDAAQ 175
+ D +
Sbjct: 564 YTDLLR 569
Score = 36.8 bits (84), Expect = 0.015
Identities = 60/428 (14%), Positives = 125/428 (29%), Gaps = 138/428 (32%)
Query: 3 YSATTPIDPRVVDKMIPYLRVQFG----NPASRNHIYGWT-AEK---AIEKARNEVAQLI 54
Y+ V ++ PYL+++ PA I G + K A++ + Q
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 55 YADPREIIW-TSGATESNNLAIKGAAHFYKK-------RGKHIITVQTEHKSVLDSIRKL 106
+I W S ++ + R H ++ S+ +R+L
Sbjct: 180 M--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC---- 162
+ KP N L+ L + V N + C
Sbjct: 238 ----LK---SKPYENCLLVLL--------N--------VQNA-KAWNA-FNLS--CKILL 270
Query: 163 --RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA 220
R K V D A I++ ++ M+ + ++ K + Y+
Sbjct: 271 TTRFKQVT---DFLSAATTTHISLDHHS---MTLTPDEV---KSLLLKYL---------- 311
Query: 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIE 278
R L +++ RL+ I +++ L + + L IE
Sbjct: 312 ---------DCRPQDLP-REVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 279 EIYINGDMNNRIPHNLNISFNFIEGESL-----LMAI--KDIAVSSGSACTSASLEPSYV 331
S N +E +++ + P+ +
Sbjct: 361 -----------------SSLNVLEPAEYRKMFDRLSVFPPSAHI------------PTIL 391
Query: 332 LRALGCN----------DELAHSSIRFTIGRFTTEKEI-DFTIKLLKMKVKKLRELSPLW 380
L + + ++L S+ EK+ + TI + + ++ +L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSL--------VEKQPKESTISIPSIYLELKVKLENEY 443
Query: 381 DMHKEGID 388
+H+ +D
Sbjct: 444 ALHRSIVD 451
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 48.8 bits (117), Expect = 1e-06
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V ++ + +L L I + L + + G++QP+ +G++C
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174
Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
+ DA ++ + + +++D ++ + PK + + RR
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS---ISPKALDVIRNRRT 231
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G E T+A++ I + EA + EE
Sbjct: 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ----IAEE 278
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 48.1 bits (115), Expect = 2e-06
Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 54/221 (24%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 118
SG T + +A++ +K + + H + E DG + L
Sbjct: 70 PSG-TMAQQIALR--IWADRKENRRVAYHPLSH------LEIHEQDGLKELQQITPLLLG 120
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 174
N L+T+ ++ V + L EI G + + +I E C +G+ H D A
Sbjct: 121 TANQLLTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Query: 175 ---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRIE 219
+ + + D + S Y KGIG + +++ +
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVS---FY--KGIGGIAGAILAGNDDFVQEAKIWK-- 232
Query: 220 AQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLAR 252
+ +GG L +I M E F A+
Sbjct: 233 -RRYGG----DLISLYPYILSADYYFEKRIGKMAEYFEAAK 268
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 48.0 bits (115), Expect = 2e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
V ++ + T Q+E+ + + ++ V + ++QP+ E+GE+CR
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYI----------RRNPRT 216
+F+ DA ++G + + +D +S K G P G + + R+
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229
Query: 217 RIEAQIHGGGHEYGLRS-------------------GTLATHQIVGMGEAFRLARIEMKE 257
I H G E + S T AT + G E RL + +
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL----ILQ 285
Query: 258 E 258
E
Sbjct: 286 E 286
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 47.3 bits (113), Expect = 5e-06
Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V +K K ++L ++ + + V + L + GV+Q + +G LC
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175
Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
+ D ++G + + +++D ++ + + + + R
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVS---FSHRAVERYKRRNT 232
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G + T+++ + G+ EA + EE
Sbjct: 233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM----ACEE 279
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 46.5 bits (111), Expect = 8e-06
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
V L+P + ++EE++ + V L + E GV +P+ ++ R
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D +VG ++ + + VD L PK + L + +
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLL---LSPKALSILDSQNS 215
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G T H I+ + EAFRL +++E
Sbjct: 216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL----IEKE 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 63/410 (15%), Positives = 112/410 (27%), Gaps = 174/410 (42%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MD T+ V ++ + + YG++ + ++ +P
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFK----------DTYGFS-----------ILDIVINNPVN 1671
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
+ HF ++GK I R Y
Sbjct: 1672 LTI----------------HFGGEKGKRI----------------------RENYSA--- 1690
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL-EIGELCRSKGVIFHCDA------ 173
+ + D L + + I EI E S F +
Sbjct: 1691 --------MIFETIVDGKLKT-----------EKIFKEINE--HSTSYTFRSEKGLLSAT 1729
Query: 174 --AQ-AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--- 227
Q A+ LM +A + KG+ P A GH
Sbjct: 1730 QFTQPALT------------LMEKAAFEDLKSKGL-------IPADATFA-----GHSLG 1765
Query: 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 287
EY A + + + + E L ++F + + E N M
Sbjct: 1766 EYA------A---LASLADVMSI------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 288 NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS--------YV----LRAL 335
P + SF+ E+L ++ + +G E YV LRAL
Sbjct: 1811 AINPGRVAASFS---QEALQYVVERVGKRTGWLV-----EIVNYNVENQQYVAAGDLRAL 1862
Query: 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKE 385
D + ++F IKL K+ + +L++ L ++ +
Sbjct: 1863 ---DTVT--------------NVLNF-IKLQKIDIIELQKSLSLEEV-EG 1893
Score = 46.2 bits (109), Expect = 1e-05
Identities = 59/372 (15%), Positives = 118/372 (31%), Gaps = 103/372 (27%)
Query: 52 QLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF 111
+ +Y ++ +L IK +A + + + + L+ + LEN
Sbjct: 174 RDLYQTYHVLV--------GDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 112 R--VTYLK------PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 163
YL P LI + QL + ++ G ++ L+ G
Sbjct: 225 TPDKDYLLSIPISCP----LIGVIQL----AHYVVTAKLLGFTP--GELRSYLK-GATGH 273
Query: 164 SKGVI-------------FHCDAAQAVGKIDINI-----QNYKVDLMSFSAHKIYGPKGI 205
S+G++ F +A+ + I + Y + S +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 206 GA----LYIRRNPRTRIEAQI-----HGGGHEY---GLRSGTLATHQIV--------GMG 245
G L I + +++ + H + L +G A + +V G+
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLN 390
Query: 246 EAFRLARIEMKEELKRILFLQKRLYNG-------------LMESIEEIYINGDMNNRIPH 292
R A+ + RI F +++L L+ ++ IN D+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-INKDLVKN--- 446
Query: 293 NLNISFNFIEGESLLMAIKDIAVSSGS--ACTSASLEPSYVLRALGCNDELAHSSIRFT- 349
N+SFN + + + + D GS S S+ V D + +++
Sbjct: 447 --NVSFN---AKDIQIPVYDTF--DGSDLRVLSGSISERIV-------DCIIRLPVKWET 492
Query: 350 IGRFTTEKEIDF 361
+F +DF
Sbjct: 493 TTQFKATHILDF 504
Score = 39.6 bits (92), Expect = 0.002
Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 38/156 (24%)
Query: 240 QIVGMGEAFRLARIEMKEELKRI-LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
Q GMG ++ R + G SI +I +NN P NL I F
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GF--SILDI----VINN--PVNLTIHF 1676
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
+G K I + + ++ + E+ S +T F +EK
Sbjct: 1677 GGEKG-------KRIRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYT---FRSEKG 1724
Query: 359 I----DFT---IKLLKMKVKKLRELSPLWDMHKEGI 387
+ FT + L+ E + D+ +G+
Sbjct: 1725 LLSATQFTQPALTLM--------EKAAFEDLKSKGL 1752
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 46.1 bits (110), Expect = 1e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
+ ++ N I + + + + + V + +++ G I PI IG L + G
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-------ALYIRRNPRTRIE 219
DA + G + + ++ K D+ +K G P G+ A +
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225
Query: 220 ------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
T + +I G+ A L E
Sbjct: 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL----YLNE 266
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 45.3 bits (108), Expect = 2e-05
Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+ L++ + + + +V + NE GV+ P+ E+ ++ + + DA A+G D
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 182 INIQNYKVDLMSFSAHKIYG-PKGIGAL--------YIRRNPRTR------IEAQIHGGG 226
I + +D++ S+ K +G P G+ + P + +
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEE--LKRILFLQKRLYNGLMESIEEI 280
T Q+ G+ A R+ +++ ++ L + ++ + E + EI
Sbjct: 252 EST---PSTPPMPQVFGINVALRI----IEKMGGKEKWLEMYEKRAKMVREGVREI 300
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 45.3 bits (108), Expect = 2e-05
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G L + + + + V LV+ E GV+ P IG L + G
Sbjct: 97 GLDPEVLDFPPGEPVDPEAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGA 155
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA------ 220
+F DA +G + +++ VD + K P G+ + R
Sbjct: 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYL 215
Query: 221 --QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
E G T + EA L + EE
Sbjct: 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL----VLEE 251
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 44.9 bits (107), Expect = 2e-05
Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V + + +L +L + + + + LV+ E G QP+ +GELCR G
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI-LALVHAETSTGARQPLEGVGELCREFGT 190
Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
+ D ++G + I + + VDL S + I L RR
Sbjct: 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT---MSSRAIEKLQRRRT 247
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ + G Y T + + EA RL + +E
Sbjct: 248 KVANWYLDMNLLGKYWGSERVY---HHTAPINLYYALREALRL----IAQE 291
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 44.9 bits (107), Expect = 3e-05
Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G RV + K TL ++EE + ++ + LV+ E GV+QP+ GELC
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL-LFLVHGESSTGVVQPLDGFGELCHRYQC 179
Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
+ D+ ++G + I + +D+ +S + + K +Y R+
Sbjct: 180 LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLIS---FNDKAKYKVYSRKT 236
Query: 214 PRTR------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
A++ G E + T + + E+ L + E+
Sbjct: 237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL----IAEQ 283
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 44.5 bits (106), Expect = 4e-05
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 23/151 (15%)
Query: 142 VMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK- 198
+++ +E V+ + IGE C+ + F CD A N+ D+M + K
Sbjct: 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207
Query: 199 IYGPKGIGALYIRRNPRTRIEA----------QIHGGGHEYGLRSGTLATHQIVGMGEAF 248
+ P GI + + R+E + E G T A ++ + E
Sbjct: 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL 267
Query: 249 RLARIEMKEE------LKRILFLQKRLYNGL 273
+ E+K+ + RI +
Sbjct: 268 K----EIKKHGGADAEVARIASQAADFRAKI 294
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 44.2 bits (105), Expect = 5e-05
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V L+ + + + +I + V +V+ E G I P+ IGE CR++
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167
Query: 168 IFHCDAAQAVGKIDINIQNYKVD 190
+F DA +G ++ + +K+D
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKID 190
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 43.6 bits (103), Expect = 7e-05
Identities = 49/365 (13%), Positives = 105/365 (28%), Gaps = 88/365 (24%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKL 106
+ S +ES +A+ A K E H SV +
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGE 160
++ +L +N + L++ I D LV V + + + E+G
Sbjct: 209 ---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265
Query: 161 LCRSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRN 213
+C +G+ H DAA A + + + D +F+ K + ++ ++
Sbjct: 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWV-KD 324
Query: 214 PRTRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGEAFRL 250
+ + G + + + + + + R
Sbjct: 325 KYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVR- 383
Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310
EM + + ++ EI + + F SL +
Sbjct: 384 HGTEMAKYFESLVRNDPSF---------EIPAKRHLG-------LVVFRLKGPNSLTENV 427
Query: 311 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 368
+G A+++ ++ RFT+ +FTT +I L++
Sbjct: 428 LKEIAKAGRLFLIPATIQDKLII--------------RFTVTSQFTTRDDILRDWNLIRD 473
Query: 369 KVKKL 373
+
Sbjct: 474 AATLI 478
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 43.4 bits (103), Expect = 8e-05
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 142 VMLVNNE--IGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 197
++LV++E G + + + + K + D ++ ++ ++ VD + +
Sbjct: 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQ 184
Query: 198 KIYG-PKGIGALYIRRNPRTRIEA-------QIHGGGHEYGLRSGTLATHQIVGMGEAFR 249
K P G+G + + R++ + G + T A + ++ +
Sbjct: 185 KGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 244
Query: 250 LARIEMKEELKRILFLQKRLYNGLMESIEEI 280
+ L+ L L+ L EE
Sbjct: 245 E----VLPRLEEHLALKAWQNALLYGVGEEG 271
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 43.5 bits (102), Expect = 9e-05
Identities = 63/370 (17%), Positives = 103/370 (27%), Gaps = 73/370 (19%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD----------------SIR 104
I T + + I K+ + + ++R
Sbjct: 92 TIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147
Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI-GVIQP---IL 156
+ T ++ G L LE I ++ + + +N G +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLK 207
Query: 157 EIGELCRSKGVIFHCDAA---QAVGKIDINIQNYK--------------VDLMSFSAHKI 199
+ + + + D+A + I YK D+++ SA K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 200 YGPKGIGAL------YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
G L + R + G YG G VG+ + L +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYING------DMNNRIPHNLNISFNFIEGESLL 307
RI +Q L +GL E G D +PH F L
Sbjct: 328 A-----YRIAQVQ-YLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACEL 381
Query: 308 MAIKDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKL 365
+ I AV GS + G +R TI R T T+ +DF I+
Sbjct: 382 YKVAGIRAVEIGSFLLGRDPKT-------GKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 366 LKMKVKKLRE 375
K VK+
Sbjct: 435 FK-HVKENAA 443
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 42.0 bits (99), Expect = 3e-04
Identities = 53/365 (14%), Positives = 105/365 (28%), Gaps = 90/365 (24%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 108
A+E+ +A+ A +R + T+ H SV +
Sbjct: 145 QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-- 202
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 162
G ++ + + S L+E + D L+ +V +LE+G +C
Sbjct: 203 -GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
Query: 163 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 215
+ + H DAA A I ++ D +F+ HK + A+++ +
Sbjct: 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRT 320
Query: 216 TRIEA---------QIHGGGH------EYGLRSG----------TLATHQIVGMGEAFRL 250
A H G + L G + + G+ R
Sbjct: 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR- 379
Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310
+++ E + + R E+ + + F + L A+
Sbjct: 380 KHVQLSHEFEAFVLQDPRF---------EVCAEVTLG-------LVCFRLKGSDGLNEAL 423
Query: 311 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 368
+ S+ L +VL RF I R + + ++
Sbjct: 424 LERINSARKIHLVPCRLRGQFVL--------------RFAICSRKVESGHVRLAWEHIRG 469
Query: 369 KVKKL 373
+L
Sbjct: 470 LAAEL 474
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 42.0 bits (98), Expect = 3e-04
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
++A +A++ AD R + T+G + +N + +A G I+ + HKS
Sbjct: 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKS 247
Query: 99 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTI--------LVSVMLV 145
+ + Y +P N G I S+ + + + V ++
Sbjct: 248 LTHLMMMS---DVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT 304
Query: 146 N-NEIGVIQPILEIGELCRSKGVIFHCDAA 174
N G++ I + K + F
Sbjct: 305 NSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 41.1 bits (97), Expect = 4e-04
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 41/162 (25%)
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDA 173
+ L+TL +++ D + + L EI GV + I CR +G+ H D
Sbjct: 119 GAADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDG 176
Query: 174 A---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRI 218
A + + + D + S Y KG+G + + + +
Sbjct: 177 ARLFEMLPYYEKTAAEIAGLFDSIYIS---FY--KGLGGIAGAILAGPAAFCQTARIWK- 230
Query: 219 EAQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLAR 252
+ +GG L + MG+ + A+
Sbjct: 231 --RRYGG----DLISLYPYIVSADYYYELRKDRMGQYYEQAK 266
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 40.8 bits (95), Expect = 6e-04
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 26/156 (16%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
E A A++ AD + G++ +NN G ++ + HKS
Sbjct: 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKS 225
Query: 99 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTILVS------------ 141
V +S + G R YL+ N G I S +EK +
Sbjct: 226 VYNSALAMA--GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFR 283
Query: 142 -VMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
++ G I E+ + D+A
Sbjct: 284 LAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAW 319
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 40.5 bits (94), Expect = 8e-04
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 27/155 (17%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
A ++ A++ AD R G + SN ++ ++ + HKS
Sbjct: 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKS 257
Query: 99 VLDSIRKLENDGFRVTYLKPKNNGL----------ITLSQLEEKI--------CSDTILV 140
+ + G + Y+ P N + L++KI +
Sbjct: 258 IEQGLMLT---GAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPS 314
Query: 141 SVMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAA 174
++ N GV E +L H D A
Sbjct: 315 YCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEA 349
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 40.0 bits (94), Expect = 0.001
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 110 GFRVTYLKPKNNG-LITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKG 166
G +V ++P G + L + EK+ ++ V + + + V+ + I + +
Sbjct: 109 GAQVDVVRPLKIGESVPLELITEKLSQNSYGA-VTVTHVDTSTAVLSDLKAISQAIKQTS 167
Query: 167 --VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-----------ALYIRR 212
F DA ++G + + VD ++ K G P G+ AL +
Sbjct: 168 PETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSK 227
Query: 213 NPRTR--------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
N + G T I + A + + EE
Sbjct: 228 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE----ILEE 277
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 39.4 bits (92), Expect = 0.002
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 18/151 (11%)
Query: 38 TAEKAIEKARNEVAQ-------LIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII 90
+A + + R +VA + ADP I T+GA++ + +K K ++
Sbjct: 126 SASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVM 185
Query: 91 TVQTEHKSVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKICSDTILVSVMLV---- 145
++ I E D +V Y L +N + +++L + ++
Sbjct: 186 IPIPQYPLYSAVIS--ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIIN 243
Query: 146 -NNEIGVIQP---ILEIGELCRSKGVIFHCD 172
N G +Q I ++ + + D
Sbjct: 244 PGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD 274
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 38.9 bits (91), Expect = 0.003
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRK---- 105
I++ G SN +I A R K+ V+T+ + + SI+K
Sbjct: 155 IFSPGGAISNMYSIMAA------RYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA 208
Query: 106 --LENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILE 157
D + +K G I + E KI V + G PI E
Sbjct: 209 LGFGTDNVIL--IKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQE 266
Query: 158 IGELCRSKGVIFHCDAA 174
I ++C + H DAA
Sbjct: 267 IADICEKYNLWLHVDAA 283
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 38.4 bits (90), Expect = 0.003
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 34/173 (19%)
Query: 44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI 103
KA + +L+ ++ + SG T++N +A + + + +I Q H I
Sbjct: 52 AKAARLIGELLERPDADVHFISGGTQTNLIAC--SLAL--RPWEAVIATQLGH------I 101
Query: 104 RKLENDGFRVTYLK----PKNNGLITLSQLEEKI-------CSDTILVSVMLVNN-EIGV 151
E T K P +G + ++ +E + LV + N E+G
Sbjct: 102 STHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVY--ISNTTEVGT 159
Query: 152 IQP---ILEIGELCRSKGVIFHCD-----AAQAVGKIDINIQNYK--VDLMSF 194
+ +I C+ G+ D +A + D+ + + D+
Sbjct: 160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 37.9 bits (88), Expect = 0.005
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 21/145 (14%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-- 121
+G T I+ + ++ I+ + HKSVL ++ +++ +
Sbjct: 78 VNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQSPL 130
Query: 122 ----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
+ LS+L +L N G + E+ + + D A
Sbjct: 131 TNHYNKVNLSRLNNDGHKLVVLTYP----NYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186
Query: 178 GKIDINIQ----NYKVDLMSFSAHK 198
NY+ D + S HK
Sbjct: 187 HFGLQGFPDSTLNYQADYVVQSFHK 211
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 37.6 bits (88), Expect = 0.006
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 29/148 (19%)
Query: 44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI 103
+ + + ++ D E+ T +N L + +A +I H I
Sbjct: 46 AQVKRKFCEIFERD-VEVFLVPTGTAANALCL--SAMT--PPWGNIYCHPASH------I 94
Query: 104 RKLE-------NDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNN-EI 149
E ++G ++ + + + +L E+ T V + E+
Sbjct: 95 NNDECGAPEFFSNGAKLMTV-DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEV 153
Query: 150 GVIQP---ILEIGELCRSKGVIFHCDAA 174
G I I IG++C+S + H D +
Sbjct: 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGS 181
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 37.4 bits (87), Expect = 0.008
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 32/137 (23%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------------SIRK---- 105
I+ G + SN A+ A R + + L SI+K
Sbjct: 169 IFCPGGSISNMYAVNLA------RYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222
Query: 106 --LENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILE 157
L D RV +K G + LE +I V ++ +G P+
Sbjct: 223 LGLGTDSVRV--VKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEA 280
Query: 158 IGELCRSKGVIFHCDAA 174
I ++C+ G+ H DAA
Sbjct: 281 IADVCQRHGLWLHVDAA 297
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 37.0 bits (86), Expect = 0.009
Identities = 54/363 (14%), Positives = 103/363 (28%), Gaps = 89/363 (24%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 108
A+ES +A+ GA K K + E H SV +
Sbjct: 145 QGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG-- 202
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 162
G ++ + N + + LE+ I D L+ V + E G +
Sbjct: 203 -GVKLRSV-QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG 260
Query: 163 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 215
+ H DAA A I ++ D +F+ HK + A+++ ++P
Sbjct: 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL-KDPS 319
Query: 216 TRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGEAFRLAR 252
+ A G + + G L + + + R
Sbjct: 320 WVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIR-RH 378
Query: 253 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD 312
++ + R E+ +M + F A+
Sbjct: 379 CNFAKQFGDLCVADSRF---------ELAAEINMG-------LVCFRLKGSNERNEALLK 422
Query: 313 IAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKV 370
G A ++ Y L R I RFT ++++++ K +
Sbjct: 423 RINGRGHIHLVPAKIKDVYFL--------------RMAICSRFTQSEDMEYSWKEVSAAA 468
Query: 371 KKL 373
++
Sbjct: 469 DEM 471
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 37.2 bits (86), Expect = 0.011
Identities = 42/264 (15%), Positives = 74/264 (28%), Gaps = 84/264 (31%)
Query: 96 HKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI 149
S+L+ IR +E + F P+ +I +EE + S + +
Sbjct: 895 ETSILEHSGIRLIEPELFNGY--NPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDK 952
Query: 150 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG--PKG--- 204
I I E GE K + A I + F + G P G
Sbjct: 953 VDIFEIPETGE-YSVKLL------KGATLYIP--------KALRFDR-LVAGQIPTGWNA 996
Query: 205 ----IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260
I I + + L V + EAF + I E+
Sbjct: 997 KTYGISDDIISQVDPI-----TL-----FVL----------VSVVEAFIASGITDPYEMY 1036
Query: 261 RILFLQKRLYN------GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
+ + + N G + ++ ++ D P + E I ++
Sbjct: 1037 KYV-HVSEVGNCSGSGMGGVSALRGMFK--DRFKDEP---VQNDILQE-----SFINTMS 1085
Query: 315 --VSS------G------SACTSA 324
V+ G AC ++
Sbjct: 1086 AWVNMLLISSSGPIKTPVGACATS 1109
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 36.1 bits (84), Expect = 0.019
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 42/143 (29%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKHIITVQTE---------------HKSV-------- 99
TSG T+SN + + A K H I H +V
Sbjct: 164 TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG 223
Query: 100 --LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGV 151
++ ++ + +G + +++L+E I L+ +V + G
Sbjct: 224 LGEKAVMTVDANA----------DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA 273
Query: 152 IQPILEIGELCRSKGVIFHCDAA 174
I + I ++ + H D A
Sbjct: 274 IDDLDFIADMAVKHDMWMHVDGA 296
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 35.2 bits (82), Expect = 0.027
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 35 YGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITV 92
YGW + V+QL Y P +I+ T+GAT +N L + G H+I++
Sbjct: 59 YGWIE--GSPAFKKSVSQL-YTGVKPEQILQTNGATGANLLVLYSLIE----PGDHVISL 111
Query: 93 QTEHKSVLDSIRKLENDGFRVTY--LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 150
++ + D + L G V ++ +N L L +L + I T ++ + NN G
Sbjct: 112 YPTYQQLYDIPKSL---GAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTG 168
Query: 151 VIQP---ILEIGELCRSKGVIFHCD 172
+ + E+ E+ G D
Sbjct: 169 AVMDRTYLEELVEIASEVGAYILSD 193
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 35.5 bits (82), Expect = 0.031
Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 32 NHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHFYKKR 85
++ + I R+ +A I A+ +I T GA+ +L ++ +
Sbjct: 125 RATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQL---LIRNE 181
Query: 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTY-LKPKNNGLITLSQLEEKIC---SDTILVS 141
I+ ++ SI + G V Y L + S +++++ S I V
Sbjct: 182 KDGILVPIPQYPLYSASIA--LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVR 239
Query: 142 VMLV---NNEIGVIQP---ILEIGELCRSKGVIFHCD 172
++V N G + +I + C+++G++ D
Sbjct: 240 ALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 33.8 bits (78), Expect = 0.072
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 24/107 (22%)
Query: 118 PKNNGLITLSQLEEKICSD------TILVSV-MLVNNEIGVIQPILEI---GELCRSKGV 167
P NG + + + I T L+++ N G + P+ I + + G+
Sbjct: 108 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI 167
Query: 168 IFHCDAAQ---AVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGA 207
H D A+ A + ++ Y D + S KG+ A
Sbjct: 168 NVHIDGARIFNASIASGVPVKEYAGYADSVMFCLS-------KGLCA 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.083
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 17/45 (37%)
Query: 175 QAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIE 219
QA+ K+ ++ K+Y AL I + +E
Sbjct: 20 QALKKLQ-------------ASLKLYADDSAPALAI----KATME 47
Score = 29.9 bits (66), Expect = 0.74
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 256 KEELKRILFLQKRL--YNGLMESIEEIYINGDM 286
K+ LK+ LQ L Y +S + I M
Sbjct: 19 KQALKK---LQASLKLYAD--DSAPALAIKATM 46
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 32.9 bits (76), Expect = 0.16
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 47 RNEVAQLIYADPREIIWTSGATESNNLAIKG 77
R +A+ +P ++ TSGATE+ + ++
Sbjct: 67 REALAEEFAVEPESVVVTSGATEALYVLLQS 97
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 31.9 bits (73), Expect = 0.38
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ---TEH 96
+ +K + +L + I T+ T + + + I+ + +
Sbjct: 95 DLWQQKMLRDNPELSIDNMSRPIVTNALTH----GLSLVGDLFVNQDDTILLPEHNWGNY 150
Query: 97 KSVLDSIRKLENDGFRV-TYLKPKNNGLITLSQLEEKICSDTILVSVMLVN 146
K V +G + TY +G T L E + S +M++N
Sbjct: 151 KLVF-----NTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILN 196
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 31.3 bits (71), Expect = 0.51
Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 53/222 (23%)
Query: 84 KRGKHIITVQTE--HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVS 141
K K I + H S+ S + + Y + + ++ KI DT+++
Sbjct: 97 KPKKVIHYLPELPGHPSIERSCKIVN-----AKYFESDK-----VGEILNKIDKDTLVI- 145
Query: 142 VMLV---NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN----YKVDLMSF 194
+ + ++ ++ ++ ++K I D A + Q DL+
Sbjct: 146 -ITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVT 204
Query: 195 SAHKIYGPKGIGAL--------YIRRNPRTRIEAQIHGGGHEYGLRSG---------TLA 237
S K+ G L I GL + L
Sbjct: 205 STDKLMEGPRGGLLAGKKELVDKIYIEGTKF------------GLEAQPPLLAGIYRALK 252
Query: 238 THQIVGMGEAFRLAR---IEMKEELKRILFLQKRLYNGLMES 276
+ + +AF A+ + E+L + L N + E
Sbjct: 253 NFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 294
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 31.0 bits (71), Expect = 0.68
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN-NEIGVIQP-ILEIGELCRSKGV 167
G++V + G + L L+ ++ ++ML N N +G+ + ILEI LC+ GV
Sbjct: 177 GYQVREIPSGPEGEVDLEALKRELGPHV--AALMLTNPNTLGLFERRILEISRLCKEAGV 234
Query: 168 IFHCDAA 174
+ D A
Sbjct: 235 QLYYDGA 241
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 30.3 bits (69), Expect = 1.1
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 27 NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
+ H A A+++ DPR
Sbjct: 209 HIGEDTHNTQLQD---FALALKNGAKVVVVDPRFS 240
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 30.2 bits (69), Expect = 1.1
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK----H 88
H ++++ E A +A+ + SG +E+ A+K A ++ +RG+
Sbjct: 65 HGSQFSSDVLEEYA-GRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFK 123
Query: 89 II 90
+I
Sbjct: 124 VI 125
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 27 NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
N ++ N + + ++ A +LI DPR
Sbjct: 170 NLSNHNWVSQF---NDLKAALKRGCKLIVLDPRRT 201
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 29.9 bits (68), Expect = 1.6
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG----KH 88
+ A A ++A L D I +T+G + + + A++ + + G K
Sbjct: 90 SPWYMATSPAARLA-EKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKR 148
Query: 89 IIT 91
II
Sbjct: 149 IIV 151
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 29.5 bits (67), Expect = 1.9
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
N I + L+E + T +++ VN +G EI ++ + +I D +++G
Sbjct: 111 INTLNIDIESLKEAVTDST--KAILTVN-LLGNPNNFDEINKIIGGRDIILLEDNCESMG 167
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 29.1 bits (66), Expect = 2.5
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG----KH 88
+ + + + A ++ L + + +T +E A+K +++ +G
Sbjct: 86 PGFQYGHPLSFQLAE-KITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTK 144
Query: 89 IIT 91
+I
Sbjct: 145 MIG 147
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 28.3 bits (64), Expect = 5.4
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG----KHII 90
+ T +E + + +A++ A + +T+ +ES + I+ ++ +G K +I
Sbjct: 89 FKTTHPAVVELS-SLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLI 147
Query: 91 T 91
Sbjct: 148 G 148
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 28.0 bits (63), Expect = 6.1
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ S +E + T ++M+ + +G + + E+ + + D A+G
Sbjct: 146 VNASLIEAAVSDKT--KAIMIAH-TLGNLFDLAEVRRVADKYNLWLIEDCCDALG 197
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 27.9 bits (62), Expect = 6.9
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 25/118 (21%)
Query: 222 IHGGGHEYGLRSGTLATHQIV-----------GMGEAFRLARIEMKEELKRILFLQKRLY 270
+HGGG + SG A I+ G+ + E + + ++ L
Sbjct: 297 VHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFLQ 356
Query: 271 -------NGLM-------ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
N M E + E GD++ + + + SLL +K +A
Sbjct: 357 KLSNDDINYGMKKKIIKEEDLLEASEKGDLHLSVADKAMRVISGLGRPSLLFKLKAVA 414
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 27.5 bits (62), Expect = 7.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 47 RNEVAQLIYADPREIIWTSGATESNNLAIK 76
R VA+ I P E++ T+G+ ++ +L K
Sbjct: 80 RAFVAEWIGVRPEEVLITTGSQQALDLVGK 109
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 27.6 bits (62), Expect = 8.8
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG----KHII 90
+ T AI A ++A+L D + + G +E+N+ I+ +++ +G II
Sbjct: 94 FKTTHVPAIALA-QKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVII 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,224,518
Number of extensions: 391843
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 93
Length of query: 397
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 301
Effective length of database: 4,021,377
Effective search space: 1210434477
Effective search space used: 1210434477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)