RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8850
(397 letters)
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 361 bits (927), Expect = e-124
Identities = 254/387 (65%), Positives = 332/387 (85%), Gaps = 3/387 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 6 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 65
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 66 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 125
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 126 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 185
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 186 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 245
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 246 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 304
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 305 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 364
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKE 385
ID+TI+L++ + +LR+LSPLW+M+K+
Sbjct: 365 IDYTIELVRKSIGRLRDLSPLWEMYKQ 391
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 253 bits (647), Expect = 5e-82
Identities = 146/377 (38%), Positives = 227/377 (60%), Gaps = 9/377 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++MI + R ++GNP + H G A +EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEMIVFYREKYGNP-NSAHGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL--CRSKGVIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+M NNE+G IQP+ ++ + ++K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K + L+ +L +GLM +I + +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLM--NLGAHIITPLEISLPNTLSVSF 299
Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L L++ I VS+ SACTS +VL A+G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLKMKVKKL 373
+E+D+ +K ++ + L
Sbjct: 360 EEVDYFLKKIEEILSFL 376
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 241 bits (615), Expect = 1e-76
Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 29/390 (7%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +A+ +V+D + R + H A + +E R + I A E
Sbjct: 26 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 85
Query: 61 IIW-TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 118
+ G TE NL + + G +II Q EH + + + L G + +
Sbjct: 86 ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+G + L L T L+++ V+N +G P+ E+ L G D AQAV
Sbjct: 146 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
+++Q D FS HK+YGP GIG LY++ + GG
Sbjct: 206 HHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT 265
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
+ +GT T I+G+G A + +ES+ ++ +
Sbjct: 266 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLY 325
Query: 284 GDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAH 343
G N N+ + + IAV +G C ++
Sbjct: 326 GPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYN-----VP 374
Query: 344 SSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
+ R ++ + T +E+D + L+ ++ +L
Sbjct: 375 AMCRASLAMYNTHEEVDRLVTGLQ-RIHRL 403
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 237 bits (605), Expect = 3e-75
Identities = 88/393 (22%), Positives = 147/393 (37%), Gaps = 31/393 (7%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +AT+ V++K++ Y N H A A E RN+VA+ I A
Sbjct: 26 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR 85
Query: 61 I-IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKP 118
++T ATE+ NL K G IIT EH S L G + +++
Sbjct: 86 EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
L + + T LV+V+ ++N +G + P EI +L G DA Q+
Sbjct: 146 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
+++Q D + S HK+ P GIG LY + + GG
Sbjct: 206 HYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT 265
Query: 228 ---EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
+ +GT A + + +G A E + + I ++ + G
Sbjct: 266 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYG 325
Query: 285 DMNNRIPHNLNISFNF----IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
SFN + ++ IA+ SG CT +P + L
Sbjct: 326 PNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHRLFD------ 375
Query: 341 LAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
A S R ++ + T++EID ++ L+ ++
Sbjct: 376 -ASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 124 bits (312), Expect = 1e-32
Identities = 58/396 (14%), Positives = 123/396 (31%), Gaps = 50/396 (12%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D ++ + + + ++GN R+ E+ N +A LI A E
Sbjct: 31 LDGNSLGARPVAALARAQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDGE 89
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
++ T + + + A R + TE + + + +
Sbjct: 90 VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP-TDLYIAEGLADMLQQGYTL 148
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+ + +L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 149 RLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV 208
Query: 181 DINIQNYKVDLMSFSAHKI--YGPKGIGALYIRRNPRTRIEAQIHGGGHE---------- 228
+++ D +K GP +++ + + G
Sbjct: 209 PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY 268
Query: 229 ------YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEE 279
GT + + + L+R L+ L+E + E
Sbjct: 269 EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE 328
Query: 280 IYING--DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
+ + + R H +SF EG +++ A+ D V G
Sbjct: 329 LTLVTPREHAKRGSH---VSFEHPEGYAVIQALIDRGV-IGDYR---------------- 368
Query: 338 NDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKK 372
+RF TT E+ +++L + +
Sbjct: 369 ----EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 124 bits (311), Expect = 3e-32
Identities = 50/404 (12%), Positives = 101/404 (25%), Gaps = 71/404 (17%)
Query: 38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
E A A++ AD + + G + + N + A G ++ + HK
Sbjct: 63 IHEGPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHK 117
Query: 98 SVLDSIRKLENDGFRVTYLKPKNNG-----------------LITLSQLEEKICSDTILV 140
SV +S + G L E +
Sbjct: 118 SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRL 177
Query: 141 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ-------------NY 187
+V+ + G I E+ + D+A + I +
Sbjct: 178 AVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 237
Query: 188 KVDLMSFSAHKIYGPKGIGALYIRRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVG 243
++ S HK + +++ + R H S +
Sbjct: 238 PGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 297
Query: 244 MGEAFRLARIEMKEEL-KRILFLQKRLYNGLME---------------------SIEEIY 281
+ + E +L +L L++ E++
Sbjct: 298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 357
Query: 282 INGDMNNRIPHNLNISFNFIEGESLLM-------AIKDIAVSSGSACTS--ASLEPSYVL 332
N D ++ + I +G + + L
Sbjct: 358 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL 417
Query: 333 RALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
R G E + +SI F + T +++ I L + + E
Sbjct: 418 RDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE 461
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 118 bits (295), Expect = 6e-30
Identities = 68/422 (16%), Positives = 115/422 (27%), Gaps = 60/422 (14%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYG-------WTAEKAIEKARNEVAQLIYADPRE 60
P I L N S + + + +++ +L D
Sbjct: 35 PFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYD--Y 92
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG--KHIITVQTEHKSVLDSI--------RKLENDG 110
II + N+ + +K G K+ + + H + + +
Sbjct: 93 IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152
Query: 111 FRVTYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP-----ILEIGELC 162
+ G + +L+E I +D I+ V V QP + E+ E+
Sbjct: 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 212
Query: 163 RSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPKGI 205
+ G+ D+A+ D ++ SA K
Sbjct: 213 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272
Query: 206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265
G + IR N A+ E + G LA + M + E L +
Sbjct: 273 GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY--LHYRIGQ 330
Query: 266 QKRLYNGLMESIEEI-------YINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318
K L + L E+ I + D +P F + L SG
Sbjct: 331 VKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYL------ESG 384
Query: 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRELS 377
A G +R TI R T +D+ L +K L
Sbjct: 385 VRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLK 444
Query: 378 PL 379
L
Sbjct: 445 GL 446
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 115 bits (287), Expect = 3e-29
Identities = 39/395 (9%), Positives = 96/395 (24%), Gaps = 53/395 (13%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
+ V + + + ++ ++ R + + +
Sbjct: 12 IILSGAVQKALDVPS------LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 65
Query: 67 ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 126
T ++ K+++ V T S + K + L
Sbjct: 66 GTLGWDIFASNFILSKAP-NKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL 124
Query: 127 SQLEEKICSDTILVSVMLVN---NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 183
+ EK+ ++ + + + S F DA ++G +
Sbjct: 125 ELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE 184
Query: 184 IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH--------------- 227
+ VD ++ K I P G+ G
Sbjct: 185 FDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIME 244
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKE-ELKRILFLQKRLYNGLMESIEEIYI 282
G T I + A + E + + L+ ++ +
Sbjct: 245 NYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSV 304
Query: 283 NGDMNNRIPHNLNISFNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 340
+ +N H L + + ++ +K + ++ G +
Sbjct: 305 SRYPSNMSAHGLT-AVYVADPPDVIAFLKSHGVVIAGGIHK------------------D 345
Query: 341 LAHSSIRF-TIGRFTTEKEIDFTIKLLKMKVKKLR 374
+ IR +G K + + + L+
Sbjct: 346 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 115 bits (289), Expect = 4e-29
Identities = 59/408 (14%), Positives = 112/408 (27%), Gaps = 58/408 (14%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREI-- 61
T D V M + + + Y +A I+ N VA L +A +
Sbjct: 62 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAA--IDLRCVNMVADLWHAPAPKNGQ 115
Query: 62 ---IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDG 110
T G++E+ L ++KR + + R + +
Sbjct: 116 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVEL 175
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP------ILEIGELCRS 164
+ + ++ E +TI V G + L+ +
Sbjct: 176 REIPM--RPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTG 233
Query: 165 KGVIFHCDAAQAVGKIDINIQNYK-------VDLMSFSAHKI-YGPKGIGALYIRR---- 212
+ H DAA + V +S S HK P G G + R
Sbjct: 234 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 293
Query: 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 272
GG + + Q++ F E +++ +
Sbjct: 294 PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLAD 353
Query: 273 LMESIE--EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA---VSSGSACTSASLE 327
+ + E G + IP + F +GE + D++ G
Sbjct: 354 EIAKLGPYEFICTGRPDEGIP---AVCFKLKDGEDPGYTLYDLSERLRLRGWQV------ 404
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
P++ L + +R R + ++ K +K L +
Sbjct: 405 PAFTLGGEATD----IVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 110 bits (273), Expect = 1e-27
Identities = 48/369 (13%), Positives = 104/369 (28%), Gaps = 40/369 (10%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
DYS + P+++D M + G+ + KA + +L+ ++
Sbjct: 7 DYSV--GMHPKILDLMAR---------DNMTQHAGYGQDSHCAKAARLIGELLERPDADV 55
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
+ SG T++N +A A ++ + + H++ + K +
Sbjct: 56 HFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVA 115
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVG 178
+ + + + E+G +I C+ G+ D A+
Sbjct: 116 DIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 175
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
+ + + + ++ Y +A H R +A
Sbjct: 176 ALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAK 235
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
++G+ + E + L GL + P N F
Sbjct: 236 GWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--------WPSASNQLF 287
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
+E A L + + + + +R T EKE
Sbjct: 288 PILENT-----------------MIAELNNDFDMYTVEPLKD-GTCIMRLCTSWATEEKE 329
Query: 359 IDFTIKLLK 367
+++LK
Sbjct: 330 CHRFVEVLK 338
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 104 bits (260), Expect = 1e-25
Identities = 40/391 (10%), Positives = 106/391 (27%), Gaps = 56/391 (14%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 65
+ + PR++ + +++ + + + +P ++ +
Sbjct: 28 SNLPPRIMAAG---------GLQMIGS-MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77
Query: 66 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
+ A+ + G + K
Sbjct: 78 SGHCALEAAL----VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTL 133
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
E +L+ + + GV+QP+ GELC + D+ ++G + +
Sbjct: 134 QEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMD 193
Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 228
+D++ + K +L + + A G +
Sbjct: 194 RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQ 253
Query: 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
+ T+ + + E+ L + E R +G ++++ D
Sbjct: 254 PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPAL 313
Query: 289 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 344
R+P ++ + ++ + D I + G
Sbjct: 314 RLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGP-------------------STGK 354
Query: 345 SIRF-TIGRFTTEKEIDFTIKLLKMKVKKLR 374
+R +G T + +D + L+ ++
Sbjct: 355 VLRIGLLGCNATRENVDRVTEALRAALQHCP 385
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 103 bits (256), Expect = 4e-25
Identities = 53/384 (13%), Positives = 116/384 (30%), Gaps = 52/384 (13%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 65
+ P V+ M N + H +++ ++ + + +P I +
Sbjct: 27 SNAHPSVLQAM---------NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSG 76
Query: 66 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
T + I + G ++ + T KP
Sbjct: 77 TGTAAMEATIAN----AVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 132
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
+++++ G QP+ +GELCR G + D ++G + I +
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLD 192
Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL-----------RSG 234
+ VDL + K G + + + + + L
Sbjct: 193 AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV 252
Query: 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDMNNRIPH 292
T I R+ +E L ++ L E +E+I ++ + R+P
Sbjct: 253 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPT 312
Query: 293 NLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
+ + ++G+++ + + I V G LA R
Sbjct: 313 LTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE-------------------LAGKVWRV 353
Query: 349 -TIGRFTTEKEIDFTIKLLKMKVK 371
+G + ++ +D I L+ ++
Sbjct: 354 GLMGFNSRKESVDQLIPALEQVLR 377
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 100 bits (248), Expect = 5e-24
Identities = 43/396 (10%), Positives = 108/396 (27%), Gaps = 59/396 (14%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
+ RV+ M + + + +++ ++ + + + R + SG
Sbjct: 26 SNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSG 75
Query: 67 -ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
A + + + + T P +
Sbjct: 76 SAHAGMEAMLSNLLEEGDRV----LIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL 131
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
+ + + ++ G++QP+ +G++C + DA ++ + +
Sbjct: 132 ETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMD 191
Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 228
+++D + A K+ G + G E
Sbjct: 192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 251
Query: 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
T+A++ I + EA E E + ++ + + D +
Sbjct: 252 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 311
Query: 289 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 344
R+P I ++ + + + V G
Sbjct: 312 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP-------------------TFGK 352
Query: 345 SIRF-TIGRFTTEKEIDFTIKLLKMKVKKLRELSPL 379
+ R +G +T ++I F + K + L+ P
Sbjct: 353 AWRVGIMGECSTVQKIQFYLYGFK---ESLKATHPD 385
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 98.8 bits (245), Expect = 3e-23
Identities = 50/417 (11%), Positives = 104/417 (24%), Gaps = 47/417 (11%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-------KAIEKARNEVAQLIYADPRE 60
P D I L +++ ++ V +
Sbjct: 34 PFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQ--Y 91
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGK----------HIITVQTEHKSVLD--SIRKLEN 108
I T + + I ++ + T+ S ++ ++R +
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYI 151
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGE 160
T ++ G L LE I ++ + + +N G L +
Sbjct: 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211
Query: 161 LCRSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPK 203
+ + + D+A+ Q D+++ SA K
Sbjct: 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
Query: 204 GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263
G L ++ + + + A L + L +
Sbjct: 272 MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331
Query: 264 FLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTS 323
+ L +GL E G + + + ++ +G
Sbjct: 332 AQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVE 391
Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRELSPL 379
G +R TI R T T+ +DF I+ K + + L
Sbjct: 392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGL 448
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 96.4 bits (238), Expect = 8e-23
Identities = 43/381 (11%), Positives = 91/381 (23%), Gaps = 52/381 (13%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWT 64
V + M+ +E+ R ++ L A ++
Sbjct: 9 LTTSRTVKEAMLFDSC----------TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQ 58
Query: 65 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 124
+ + + A K +I + + + + L +
Sbjct: 59 GSGSYAVEAVLGSALGPQD---KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV 115
Query: 125 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 184
++++ G++ PI E+G L G + DA + G I ++I
Sbjct: 116 QAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI 175
Query: 185 QNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIE-----------AQIHGGGHEYGLR 232
+D + SA+K G G + R + AQ +G
Sbjct: 176 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKW 235
Query: 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
T TH ++ +A + E + + Q + D P
Sbjct: 236 RFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI 295
Query: 293 NLNISFNFIEGESL-----LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347
+ + + G R
Sbjct: 296 ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--------------------QSDCFR 335
Query: 348 FTIGRFTTEKEIDFTIKLLKM 368
+I + ++
Sbjct: 336 IGNIGEVYAADITALLTAIRT 356
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 94.6 bits (233), Expect = 5e-22
Identities = 55/408 (13%), Positives = 127/408 (31%), Gaps = 67/408 (16%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
++ + ++ + N + ++ I + R +A+ DP
Sbjct: 11 FNFGGQGILPTVALEAITAMYGYLQENG-PFSIAANQHIQQLIAQLRQALAETFNVDPNT 69
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDG---FRVTYLK 117
I T T ++ + +G I+ EH ++ ++ + +R +
Sbjct: 70 ITITDNVTTGCDIVLW---GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 126
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL----CRSKGVIFHCDA 173
N + L + T LV + + G + P+ EI + + V D
Sbjct: 127 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 186
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGG------ 226
AQ+ G + ++ +VD +F+ HK + G+G LYI + I G
Sbjct: 187 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 246
Query: 227 -----------HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 275
+ + + + + + +E + I + L+ G +
Sbjct: 247 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG-LN 305
Query: 276 SIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAIKD--IAVSSGSACTSASLEPSY 330
+ ++ + +SF + +++ +++ I + + +
Sbjct: 306 QLPHVHCLATSAPQAG---LVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------- 351
Query: 331 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378
IR T E+EI+ + L + P
Sbjct: 352 -----------DPDCIRACCHYITDEEEINHLLARLA-------DFGP 381
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 86.5 bits (213), Expect = 4e-19
Identities = 39/334 (11%), Positives = 92/334 (27%), Gaps = 32/334 (9%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
AT + + + K+II + + KS S+ + + + +
Sbjct: 118 VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELR 177
Query: 124 ITLSQLEEKICSDT----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG- 178
L +E KI + + V + E+ +C + + + A +
Sbjct: 178 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS 237
Query: 179 -----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL 231
I + ++D S K P G + I G
Sbjct: 238 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRAS---- 293
Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY---INGDMNN 288
+ + +L + + ++ + E + + +N
Sbjct: 294 ------ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 347
Query: 289 RIPHNLNI----SFNFIEGESLLMAIKDIAVSSGSACTSASLEP--SYVLRALGCN-DEL 341
I + + + L + VS A +++ + R + D
Sbjct: 348 PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY 407
Query: 342 AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
+ + +++D IK L + +R+
Sbjct: 408 PCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 84.9 bits (208), Expect = 6e-19
Identities = 35/373 (9%), Positives = 88/373 (23%), Gaps = 53/373 (14%)
Query: 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTS 65
P V ++ S + ++ + + + ++ D E+
Sbjct: 12 IAGASPEVAQALVK---------HSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVP 61
Query: 66 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
T +N L + +I H + + +
Sbjct: 62 TGTAANALCLSAMTP----PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLD 117
Query: 126 L----------SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ + ++ I + I IG++C+S + H D ++
Sbjct: 118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSR 177
Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235
+ + + + + +
Sbjct: 178 FANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHL 237
Query: 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295
+ + + L ++ +RL GL G + N
Sbjct: 238 SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-------LGGVEVLGGTEAN 290
Query: 296 ISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCN-DELAHSSIRFTIGRFT 354
I F +++ A+ G D + +RF T
Sbjct: 291 ILF-CRLDSAMIDALLK--------------------AGFGFYHDRWGPNVVRFVTSFAT 329
Query: 355 TEKEIDFTIKLLK 367
T +++D + ++
Sbjct: 330 TAEDVDHLLNQVR 342
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 79.8 bits (196), Expect = 6e-17
Identities = 55/359 (15%), Positives = 109/359 (30%), Gaps = 49/359 (13%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------SIRKLENDGFRVT 114
I+ T + NL K G+++ + + + D
Sbjct: 93 IVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDA 148
Query: 115 YLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGELCRSKG 166
L G I L++L I + + + + N G + + E+ + G
Sbjct: 149 SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYG 208
Query: 167 VIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPKGIGALY 209
+ DA + V + D + S K G L
Sbjct: 209 IKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLC 268
Query: 210 IRRN---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFL 265
+ + ++ G YG +G +G+ EA + IE ++++ +
Sbjct: 269 MNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK 328
Query: 266 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSAS 325
+ ++E + D PH F +SL + I + +G
Sbjct: 329 LREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP---AQSLAAS---IYMETGVRSMERG 382
Query: 326 LEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDF---TIKLLKMKVKKLRELSPLW 380
+ + + G N ++R TI R T +D I L + +R L+ ++
Sbjct: 383 IVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVY 441
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 78.4 bits (192), Expect = 2e-16
Identities = 47/315 (14%), Positives = 98/315 (31%), Gaps = 28/315 (8%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
T +T + AA +I HKS + ++ + + V + +
Sbjct: 135 TPISTGMSISLCLSAARKKYGS-NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 193
Query: 124 ITLSQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV- 177
+ + +E I + V L I+EI ++C + + + A A+
Sbjct: 194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 253
Query: 178 ----GKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232
+ Y+VD + S+ K + P G G +Y + + + G
Sbjct: 254 NNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPV 313
Query: 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
TL + +G E +K +K L L + + + ++ P
Sbjct: 314 VNTLVSLLSMG--------SKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVESPI 364
Query: 293 NLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352
IS N + + + ++ V +G + H I
Sbjct: 365 ASCISVN-SDPVEIAAKLYNLRV-TGPRGIKKTDHFGNCYLGTY-----THDYIVMNAAI 417
Query: 353 FTTEKEIDFTIKLLK 367
++I ++ L+
Sbjct: 418 GVRTEDIVNSVSKLE 432
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 76.0 bits (185), Expect = 8e-16
Identities = 44/351 (12%), Positives = 107/351 (30%), Gaps = 30/351 (8%)
Query: 29 ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
+ + + N++ + + D T+GA E+ + A K+
Sbjct: 35 CTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA----KKDAW 88
Query: 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE-----KICSDTILVSVM 143
++ + H S + + + IT + K + +L +
Sbjct: 89 VVMDENCHYSS-YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 147
Query: 144 LVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK 203
+ G + + +I ++C V + A A+G++ ++++ D + S HK
Sbjct: 148 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS 207
Query: 204 GIGALYIRRNPRTR--IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 261
G + + + E L T I+ + +F E +
Sbjct: 208 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-HVRERIKRWDE 266
Query: 262 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSAC 321
+ +R + + + PHN ++ F E + G
Sbjct: 267 EVEKARRFAAEMEK------LGIKQLGDNPHNHDLMFFHAEVLYEI----SKKAKGGRFF 316
Query: 322 TSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372
L+ + + + +++E+D+ + K ++K
Sbjct: 317 LYRELKSRKIHGI-----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 69.9 bits (170), Expect = 1e-13
Identities = 50/410 (12%), Positives = 110/410 (26%), Gaps = 77/410 (18%)
Query: 17 MIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI---------IWTSGA 67
M+ + + + + + +++ + + A
Sbjct: 89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSA 148
Query: 68 TESNNLAIKGAAHFYKKRGKH---------------IITVQTEHKSVLDSIRKLENDGFR 112
+E+ +A+ A +R + H SV + G +
Sbjct: 149 SEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGL---IGGVK 205
Query: 113 VTYLKPKNNGLITLSQLEEKICSDT------ILVSVMLVNNEIGVIQPILEIGELCRSKG 166
+ + + S L+E + D V L +LE+G +C +
Sbjct: 206 LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265
Query: 167 VIFHCDAAQAVGKIDINIQNYK------VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA 220
+ H DAA A + D +F+ HK + + A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA 325
Query: 221 QIHGGGHEYGLRSG----TLATHQIVGMGEAFRLARIEM----------KEELKRILFLQ 266
+ G T H + +G FR ++ + +++ + L
Sbjct: 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 267 KRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA-CTSA 324
+++ E+ + + F + L A+ + S+
Sbjct: 386 HEFEAFVLQDPRFEVCAEVTLG-------LVCFRLKGSDGLNEALLERINSARKIHLVPC 438
Query: 325 SLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKL 373
L +VL RF I R + + ++ +L
Sbjct: 439 RLRGQFVL--------------RFAICSRKVESGHVRLAWEHIRGLAAEL 474
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Escherichia coli [TaxId: 562]}
Length = 360
Score = 63.2 bits (152), Expect = 1e-11
Identities = 33/305 (10%), Positives = 77/305 (25%), Gaps = 15/305 (4%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE--KAIEKARNEVAQLIYA-DPREIIW 63
+ V+ + LR G S + E + E+A + L+ ++++
Sbjct: 10 AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLF 69
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
G A K +I++ + +
Sbjct: 70 CHGGGR----GQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDG 125
Query: 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 183
+ + + + NE I E V+ D + + I+
Sbjct: 126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID 183
Query: 184 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY----GLRSGTLATH 239
+ Y V + I + + I + +
Sbjct: 184 VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFA 243
Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
+ L E+ +I + L G++++ + + NR +N+ F
Sbjct: 244 WYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNR--SRMNVPFQ 301
Query: 300 FIEGE 304
+
Sbjct: 302 LADSA 306
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus
thermophilus [TaxId: 274]}
Length = 368
Score = 44.0 bits (102), Expect = 2e-05
Identities = 51/338 (15%), Positives = 99/338 (29%), Gaps = 25/338 (7%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGA 67
P P +++ + L R Y A + R +A+ +P ++ TSGA
Sbjct: 38 PPPPFLLEAVRRAL--------GRQDQYAPPA--GLPALREALAEEFAVEPESVVVTSGA 87
Query: 68 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLS 127
TE+ + G ++ ++ L V + LS
Sbjct: 88 TEA----LYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS 143
Query: 128 QLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINI 184
LE+ + T + + N G++ + I L R+ + D
Sbjct: 144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP 203
Query: 185 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 244
+ + + K + A R + + S + T G+
Sbjct: 204 RRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGV 263
Query: 245 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304
EA +LAR E E R + ++R + + +P + G
Sbjct: 264 AEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY------VPEGTYFLMAELPGW 317
Query: 305 SLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 340
+++ +A+ SA A +E
Sbjct: 318 DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEE 355
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 36.7 bits (83), Expect = 0.003
Identities = 44/381 (11%), Positives = 103/381 (27%), Gaps = 57/381 (14%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
T + M + + G+ YG + I + A+ + ++
Sbjct: 10 TKPTEEMRKAMA---QAEVGDDV-----YG--EDPTINELERLAAETFGKE--AALFVPS 57
Query: 67 ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 126
T N ++I + ++ + + + + + P NG +
Sbjct: 58 GTMGNQVSIMAHTQRG-----DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDP 112
Query: 127 SQLEEKICS------DTILVSVMLVNNEIGV----IQPILEIGELCRSKGVIFHCDAAQA 176
+ + I T L+++ +N G ++ I EI + + G+ H D A+
Sbjct: 113 DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236
+ K + KG+ A R + +
Sbjct: 173 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQ 232
Query: 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296
A L +++ K + ++ G N N+
Sbjct: 233 AGV-----------LAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNM 281
Query: 297 SFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
+ + + A + A+ + IR + +
Sbjct: 282 VILRTDNLKV----------NAHGFIEALRNSGVLANAVS------DTEIRLVTHKDVSR 325
Query: 357 KEIDFTIKLLKMKVKKLRELS 377
+I+ + + + K R+ S
Sbjct: 326 NDIEEALNIFE---KLFRKFS 343
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 36.9 bits (84), Expect = 0.003
Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 17/220 (7%)
Query: 17 MIPYLRVQFGNPASRNHI----YGW-TAEKAIEKARNEVAQLIYADPREIIWTSGATESN 71
+P+ R G GW T ++ +L + + S AT
Sbjct: 2 FLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGN--QYAVAVSSATAGM 59
Query: 72 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE 131
++A+ G +IT S L+ I + V ++ ++T +E
Sbjct: 60 HIALMALGI---GEGDEVITPSMTWVSTLNMI--VLLGANPVMVDVDRDTLMVTPEHIEA 114
Query: 132 KICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191
I T + + + G + I L G+ DAA A G
Sbjct: 115 AITPQTKAI---IPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGT 171
Query: 192 --MSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229
SF A K G + + G
Sbjct: 172 AIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGV 211
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 32.8 bits (74), Expect = 0.079
Identities = 35/328 (10%), Positives = 78/328 (23%), Gaps = 39/328 (11%)
Query: 36 GWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITV 92
+EK E+ +++ A R I++ G T+ + + T
Sbjct: 98 SNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLV------ISLSPNMTATP 151
Query: 93 QTEHKSVLDSIRKLENDGFRVTYLKPKNNGL-ITLSQLEEKICSDTILVSVMLVNNEIGV 151
V+ + Y K + + + V NN G+
Sbjct: 152 DAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGL 211
Query: 152 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG---------- 201
++ + G + I D++ F+ K G
Sbjct: 212 LRHAVIKGCK------SIYDMVYYWPHYTPI-KYKADEDILLFTMSKFTGHSGSRFGWAL 264
Query: 202 --PKGIGALYIRRNPRTRIEA-QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKE 257
+ + + + + L+ G + ++E
Sbjct: 265 IKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324
Query: 258 ELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL-----LMAIKD 312
I L + + + + P + + ++ E E
Sbjct: 325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGR 384
Query: 313 IAVSSGSACTSASLEPSYVLRALGCNDE 340
I +G YV +L +
Sbjct: 385 INTQNGVGF---EASSRYVRLSLIKTQD 409
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 28.2 bits (63), Expect = 0.94
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 343 HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGI 387
+++ ++ I F +++F + + R+LS +E +
Sbjct: 17 NTTKKYNIMAFNAADKVNFA---TWNQARLERDLSNKKIYQEEEM 58
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 26.4 bits (58), Expect = 2.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 357 KEIDFTIKLLKMKVKKLRELS 377
K F I L K++ ++L EL+
Sbjct: 86 KAAKFAINLKKVEERELPELT 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,517,999
Number of extensions: 73843
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 31
Length of query: 397
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,213,086
Effective search space: 376056660
Effective search space used: 376056660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)