BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8852
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/521 (41%), Positives = 314/521 (60%), Gaps = 30/521 (5%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS----FPYDF---QNKFGMLHIKTISGIK-SPIEISAQIFI 247
T+ +IKR I R ++ P+ N + +K G K +P +ISA++
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK---GQKMAPPQISAEVLK 121
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+KK AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY L
Sbjct: 122 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 181
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
DK AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 182 DKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 364 KNAFLKK--LSYKDVNILMIKSREIKEL--LSYQSSVKLNVKL-------SDKKIVNITI 412
+ F K + ++ + M + +E E + S+ + +V L + K +NI +
Sbjct: 242 EE-FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+ ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ FF
Sbjct: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 473 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 532
++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I +NTT
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIAKNTT 417
Query: 533 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592
IP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+
Sbjct: 418 IPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFD 477
Query: 593 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+DADG+L + A +K SGK++ ITIK +N DEI+ ++D
Sbjct: 478 IDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRD 518
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 212/522 (40%), Positives = 304/522 (58%), Gaps = 32/522 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI P VL++ G PSI+ Y DG VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIXDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS----FPYDF---QNKFGMLHIKTISGIK-SPIEISAQIFI 247
T+ +IKR I R ++ P+ N + +K G K +P +ISA++
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIXPFKIIAADNGDAWVEVK---GQKXAPPQISAEVLK 121
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
KK AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY L
Sbjct: 122 KXKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 181
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
DK AVYDLGGG FDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 182 DKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 364 KNAFLKKLSYKDVNILMIKSREIKEL-----LSYQSSVKLNVKL-------SDKKIVNIT 411
+ KK D+ + + +KE + S+ + +V L + K NI
Sbjct: 242 EE--FKKDQGIDLRNDPLAXQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHXNIK 299
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
+ + ++ + LVNR+I AL DA L++ DI++VILVGG TR + + V+ FF
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRXPXVQKKVAEFFGK 359
Query: 472 TLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 531
++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET GG+ +I +NT
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETXGGVXTTLIAKNT 416
Query: 532 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 591
TIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+
Sbjct: 417 TIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGXPQIEVTF 476
Query: 592 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+DADG+L + A +K SGK++ ITIK +N DEI+ ++D
Sbjct: 477 DIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKXVRD 518
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 205/509 (40%), Positives = 299/509 (58%), Gaps = 37/509 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 255
TI SIKR + D K + Y +P EISA I LK AE+
Sbjct: 63 TIISIKRHMGTDYK-VEIEGKQY------------------TPQEISAIILQYLKSYAED 103
Query: 256 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 315
+ + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK + I
Sbjct: 104 YLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQTI 163
Query: 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK----L 371
VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V N F ++ L
Sbjct: 164 L-VYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLV-NQFKQEHGIDL 221
Query: 372 SYKDVNILMIK--SREIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHL 424
S + + +K + + K+ LS + ++++ + + +T+ +F ++ HL
Sbjct: 222 SKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHL 281
Query: 425 VNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVV 484
V RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++PD+ V
Sbjct: 282 VERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVA 341
Query: 485 FGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTF 544
GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S FTT
Sbjct: 342 IGAAIQGGVIAGEV---KDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTA 398
Query: 545 KDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAY 604
DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G++ + A
Sbjct: 399 ADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAK 458
Query: 605 EKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ + K++ ITIK ++ +EI+ +K+
Sbjct: 459 DLGTNKEQSITIKSSSGLSEEEIQRMIKE 487
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 328 bits (840), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 197/508 (38%), Positives = 294/508 (57%), Gaps = 28/508 (5%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKIIF 528
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIK 415
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I+
Sbjct: 416 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 475
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITI 616
VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 476 VTFDIDANGILNVSAVDKSTGKENKITI 503
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 197/508 (38%), Positives = 292/508 (57%), Gaps = 28/508 (5%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKIIF 528
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIK 415
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I+
Sbjct: 416 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 475
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITI 616
VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 476 VTFDIDANGILNVSAVDKSTGKENKITI 503
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
Length = 543
Score = 326 bits (835), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 196/508 (38%), Positives = 293/508 (57%), Gaps = 28/508 (5%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ K+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQAAKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVRAERNVLIFDLGGGTFDVSILTTEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKIIF 528
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIK 415
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I+
Sbjct: 416 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 475
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITI 616
VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 476 VTFDIDANGILNVSAVDKSTGKENKITI 503
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/383 (39%), Positives = 223/383 (58%), Gaps = 27/383 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS----FPYDF---QNKFGMLHIKTISGIK-SPIEISAQIFI 247
T+ +IKR I R ++ P+ N + +K G K +P +ISA++
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK---GQKMAPPQISAEVLK 121
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+KK AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY L
Sbjct: 122 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 181
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
DK AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 182 DKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241
Query: 364 KNAFLKK--LSYKDVNILMIKSREIKE--LLSYQSSVKLNVKL-------SDKKIVNITI 412
+ F K + ++ + M + +E E + S+ + +V L + K +NI +
Sbjct: 242 EE-FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+ ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ FF
Sbjct: 301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 473 LLTSIDPDKAVVFGAAIQANFLS 495
++PD+AV GAA+Q L+
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLT 383
>pdb|3QFU|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXED WITH
ADP
Length = 394
Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 234/388 (60%), Gaps = 28/388 (7%)
Query: 129 VKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKIT 188
V+N IGID GTT S VA+++N E+L ++ G + PS V + D ++ +G AK
Sbjct: 14 VENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERL-IGDAAKNQ 72
Query: 189 QNIDPKNTISSIKRFIA---------RDLKNINTNSFPYDFQNKFGMLHIK-TISGIK-- 236
+P+NTI IKR I +D+K++ P++ NK G ++ ++ G K
Sbjct: 73 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHL-----PFNVVNKDGKPAVEVSVKGEKKV 127
Query: 237 -SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLL 295
+P EIS I +K+IAE+ + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++
Sbjct: 128 FTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIV 187
Query: 296 NEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355
NEPT+AAIAY LDK+ E VYDLGGGTFD+S+L +NGVF+V + GD++LGG+DFD
Sbjct: 188 NEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFD 247
Query: 356 YCLFSWIVKNAFLKK--LSYKDVNILMIK----SREIKELLSYQSSVKLNV-KLSDKKIV 408
Y + ++K AF KK + D N + K + + K LS Q S ++ + D +
Sbjct: 248 YKIVRQLIK-AFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDL 306
Query: 409 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468
+ T+ +F + L +T+ K L D+ L KD+++++LVGGSTR+ + + + ++
Sbjct: 307 SETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESY 366
Query: 469 FKTTLLT-SIDPDKAVVFGAAIQANFLS 495
F + I+PD+AV +GAA+QA LS
Sbjct: 367 FDGKKASKGINPDEAVAYGAAVQAGVLS 394
>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN
pdb|3QML|A Chain A, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|B Chain B, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 390
Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 234/388 (60%), Gaps = 28/388 (7%)
Query: 129 VKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKIT 188
V+N IGID GTT S VA+++N E+L ++ G + PS V + D ++ +G AK
Sbjct: 10 VENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERL-IGDAAKNQ 68
Query: 189 QNIDPKNTISSIKRFIA---------RDLKNINTNSFPYDFQNKFGMLHIK-TISGIK-- 236
+P+NTI IKR I +D+K++ P++ NK G ++ ++ G K
Sbjct: 69 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHL-----PFNVVNKDGKPAVEVSVKGEKKV 123
Query: 237 -SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLL 295
+P EIS I +K+IAE+ + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++
Sbjct: 124 FTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIV 183
Query: 296 NEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355
NEPT+AAIAY LDK+ E VYDLGGGTFD+S+L +NGVF+V + GD++LGG+DFD
Sbjct: 184 NEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFD 243
Query: 356 YCLFSWIVKNAFLKK--LSYKDVNILMIK----SREIKELLSYQSSVKLNV-KLSDKKIV 408
Y + ++K AF KK + D N + K + + K LS Q S ++ + D +
Sbjct: 244 YKIVRQLIK-AFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDL 302
Query: 409 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468
+ T+ +F + L +T+ K L D+ L KD+++++LVGGSTR+ + + + ++
Sbjct: 303 SETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESY 362
Query: 469 FKTTLLT-SIDPDKAVVFGAAIQANFLS 495
F + I+PD+AV +GAA+QA LS
Sbjct: 363 FDGKKASKGINPDEAVAYGAAVQAGVLS 390
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 217/386 (56%), Gaps = 30/386 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTT S V + +N E++ + G + PS V + P+G+ +G AK +P+N
Sbjct: 29 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPEN 88
Query: 196 TISSIKRFIARD--------------LKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEI 241
T+ KR I R K + + PY Q G KT + P EI
Sbjct: 89 TVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPY-IQVDIGGGQTKTFA----PEEI 143
Query: 242 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 301
SA + +K+ AE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+A
Sbjct: 144 SAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAA 203
Query: 302 AIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
AIAY LDK E V+DLGGGTFD+S+L NGVF+V++ GD++LGG+DFD +
Sbjct: 204 AIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEH 263
Query: 362 IVKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITID 413
+K KK + KDV N + K RE+ K LS Q ++ ++ + + + T+
Sbjct: 264 FIK--LYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLT 321
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F + L T+ K L D++L DI+ ++LVGGSTR+ I + V FF
Sbjct: 322 RAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKE 381
Query: 474 LT-SIDPDKAVVFGAAIQANFLSGNR 498
+ I+PD+AV +GAA+QA LSG++
Sbjct: 382 PSRGINPDEAVAYGAAVQAGVLSGDQ 407
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
Length = 384
Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 148/384 (38%), Positives = 215/384 (55%), Gaps = 30/384 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTT S V + +N E++ + G + PS V + P+G+ +G AK +P+N
Sbjct: 8 VGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPEN 67
Query: 196 TISSIKRFIARD--------------LKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEI 241
T+ KR I R K + + PY Q G KT + P EI
Sbjct: 68 TVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPY-IQVDIGGGQTKTFA----PEEI 122
Query: 242 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 301
SA + +K+ AE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+A
Sbjct: 123 SAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAA 182
Query: 302 AIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
AIAY LDK E V+DLGGGTFD+S+L NGVF+V++ GD++LGG+DFD +
Sbjct: 183 AIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEH 242
Query: 362 IVKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITID 413
+K KK + KDV N + K RE+ K LS Q ++ ++ + + + T+
Sbjct: 243 FIK--LYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLT 300
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F + L T+ K L D++L DI+ ++LVGGSTR+ I + V FF
Sbjct: 301 RAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKE 360
Query: 474 LT-SIDPDKAVVFGAAIQANFLSG 496
+ I+PD+AV +GAA+QA LSG
Sbjct: 361 PSRGINPDEAVAYGAAVQAGVLSG 384
>pdb|2QW9|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QWL|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWL|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWM|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
pdb|2QWM|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
Length = 394
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 218/398 (54%), Gaps = 27/398 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNRGIDDNFLLL 507
L SI+PD+AV +GAA+QA LSG++ + LLL
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLL 393
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular
Chaperone Hsc70. Ii. Potassium Binds Specifically In The
Atpase Active Site
pdb|1NGI|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|1NGJ|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|3HSC|A Chain A, Three-Dimensional Structure Of The Atpase Fragment Of A
70k Heat-Shock Cognate Protein
Length = 386
Score = 221 bits (564), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
Mutant With Cys 17 Replaced By Lys
Length = 386
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSKVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID G+T S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++N+PT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINQPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTF++SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFNVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E +++LGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFNLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 214/389 (55%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GI+ GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGINLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGG FD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGVFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGG FD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGEFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++N PT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINSPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GI GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGISLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTF +SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFSVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++ LGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFSLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2
(Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 211/386 (54%), Gaps = 29/386 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + ++ E++ + G PS V + D + +G AK ++P
Sbjct: 25 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 83
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NTI KR I R ++ S +P+ ++ G + ++ K+ P EIS+ +
Sbjct: 84 NTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVL 143
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNVLR++NEPT+AAIAY
Sbjct: 144 TKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYG 203
Query: 307 LDKNIFEGI---FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
LDK G ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + S +
Sbjct: 204 LDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLA 263
Query: 364 KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TI 412
+ K+ KD+ R ++ L + K + S + + I +I
Sbjct: 264 EE--FKRKHKKDIG---PNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSI 318
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+F + L T+ KAL DA L I ++LVGGSTR+ I + + +FF
Sbjct: 319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK 378
Query: 473 LLT-SIDPDKAVVFGAAIQANFLSGN 497
L SI+PD+AV +GAA+QA L G+
Sbjct: 379 ELNKSINPDEAVAYGAAVQAAILIGD 404
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 206/385 (53%), Gaps = 27/385 (7%)
Query: 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 193
+++GID GTT S V + + E+L + G PS V + D + VG AK ++P
Sbjct: 25 LAVGIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYVAFT-DTERLVGDAAKSQAALNP 83
Query: 194 KNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISAQI 245
NT+ KR I R + S +P+ ++ G ++ + P EIS+ +
Sbjct: 84 HNTVFDAKRLIGRKFADTTVQSDMKHWPFRVVSEGGKPKVRVCYRGEDKTFYPEEISSMV 143
Query: 246 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
+K+ AE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 144 LSKMKETAEAYLGQPVKHAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAY 203
Query: 306 KLD-KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
LD + E ++DLGGGTFD+S+L GVF+V + GD++LGG+DFD L
Sbjct: 204 GLDRRGAGERNVLIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLV----- 258
Query: 365 NAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TID 413
N F+++ K L R ++ L + K + S + + I +I
Sbjct: 259 NHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSIT 318
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F + L T+ KAL DA L I++V+LVGGSTR+ + + + +FF
Sbjct: 319 RARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGKE 378
Query: 474 LT-SIDPDKAVVFGAAIQANFLSGN 497
L SI+PD+AV +GAA+QA L G+
Sbjct: 379 LNKSINPDEAVAYGAAVQAAVLMGD 403
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
pdb|2QWO|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 394
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 217/398 (54%), Gaps = 27/398 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVL ++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLCIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNRGIDDNFLLL 507
L SI+PD+AV +GAA+QA LSG++ + LLL
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLL 393
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTF +SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFKVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA LSG++
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILSGDK 384
>pdb|3CQX|A Chain A, Chaperone Complex
pdb|3CQX|B Chain B, Chaperone Complex
Length = 386
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 211/386 (54%), Gaps = 27/386 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 7 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 65
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 66 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 125
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 126 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 185
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 186 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 243
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 244 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 300
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 301 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 360
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLS 495
L SI+PD+AV +GAA+QA LS
Sbjct: 361 GKELNKSINPDEAVAYGAAVQAAILS 386
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 27/382 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
++GID GTT S V + ++ E++ + G PS V + D + +G AK ++P
Sbjct: 25 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 83
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NT+ KR I R + S +P+ N G + ++ KS P E+S+ +
Sbjct: 84 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 143
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 144 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 203
Query: 307 LDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + N
Sbjct: 204 LDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-----N 258
Query: 366 AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TIDM 414
F+ + K + R ++ L + K + S + + I +I
Sbjct: 259 HFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 318
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF L
Sbjct: 319 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 378
Query: 475 T-SIDPDKAVVFGAAIQANFLS 495
SI+PD+AV +GAA+QA LS
Sbjct: 379 NKSINPDEAVAYGAAVQAAILS 400
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|A Chain A, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 381
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 27/382 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
++GID GTT S V + ++ E++ + G PS V + D + +G AK ++P
Sbjct: 6 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 64
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NT+ KR I R + S +P+ N G + ++ KS P E+S+ +
Sbjct: 65 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 124
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 184
Query: 307 LDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + N
Sbjct: 185 LDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-----N 239
Query: 366 AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TIDM 414
F+ + K + R ++ L + K + S + + I +I
Sbjct: 240 HFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 299
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF L
Sbjct: 300 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 359
Query: 475 T-SIDPDKAVVFGAAIQANFLS 495
SI+PD+AV +GAA+QA LS
Sbjct: 360 NKSINPDEAVAYGAAVQAAILS 381
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 211/386 (54%), Gaps = 27/386 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ +R I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAERLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLS 495
L SI+PD+AV +GAA+QA LS
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILS 381
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 210/386 (54%), Gaps = 27/386 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ R I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAARLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLS 495
L SI+PD+AV +GAA+QA LS
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILS 381
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2)
From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 209/387 (54%), Gaps = 29/387 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + ++ E++ + G PS V + D + +G AK +P
Sbjct: 7 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAXNPT 65
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NTI KR I R ++ S +P+ ++ G + ++ K+ P EIS+ +
Sbjct: 66 NTIFDAKRLIGRKFEDATVQSDXKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSXVL 125
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNVLR++NEPT+AAIAY
Sbjct: 126 TKXKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYG 185
Query: 307 LDKNIFEGI---FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
LDK G ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD S +
Sbjct: 186 LDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRXVSHLA 245
Query: 364 KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TI 412
+ K+ KD+ R ++ L + K + S + + I +I
Sbjct: 246 EE--FKRKHKKDIG---PNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSI 300
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+F + L T+ KAL DA L I ++LVGGSTR+ I + + +FF
Sbjct: 301 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK 360
Query: 473 LLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA L G++
Sbjct: 361 ELNKSINPDEAVAYGAAVQAAILIGDK 387
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 210/386 (54%), Gaps = 27/386 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID GTT S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ R I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAMRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLS 495
L SI+PD+AV +GAA+QA LS
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILS 381
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 211/385 (54%), Gaps = 21/385 (5%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K ++IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 27 KGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 85
Query: 192 DPKNTISSIKRFIARDLKN----INTNSFPYDFQNKFG----MLHIKTISGIKSPIEISA 243
+P+NT+ KR I R + + +P+ N+ G ++ K + P EIS+
Sbjct: 86 NPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISS 145
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ LK+ AE + + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 146 MVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 205
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LDK E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L S
Sbjct: 206 AYGLDKGGQGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHF 265
Query: 363 VKNAFLKKLSYKD-------VNILMIKSREIKELLSYQSSVKLNV-KLSDKKIVNITIDM 414
V+ K+ KD V L K LS + L + L + +I
Sbjct: 266 VEE--FKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYTSITR 323
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L T+ KAL DA + I++++LVGGSTR+ + + ++F L
Sbjct: 324 ARFEELCADLFRGTLEPVEKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGRDL 383
Query: 475 T-SIDPDKAVVFGAAIQANFLSGNR 498
SI+PD+AV +GAA+QA L G++
Sbjct: 384 NKSINPDEAVAYGAAVQAAILMGDK 408
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 210/386 (54%), Gaps = 27/386 (6%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+K ++GID G T S V + ++ E++ + G PS V + D + +G AK
Sbjct: 2 SKGPAVGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVA 60
Query: 191 IDPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEIS 242
++P NT+ KR I R + S +P+ N G + ++ KS P E+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AA
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 303 IAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
IAY LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD +
Sbjct: 181 IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-- 238
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------- 410
N F+ + K + R ++ L + K + S + + I
Sbjct: 239 ---NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 296 SITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN 355
Query: 471 TTLLT-SIDPDKAVVFGAAIQANFLS 495
L SI+PD+AV +GAA+QA LS
Sbjct: 356 GKELNKSINPDEAVAYGAAVQAAILS 381
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 27/382 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
++GID GTT S V + ++ E++ + G PS V + D + +G AK ++P
Sbjct: 3 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 61
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NT+ KR I R + S +P+ N G + ++ KS P E+S+ +
Sbjct: 62 NTVFDAKRLIGRAFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 122 TKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 307 LDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + E ++DLGGGTF +SIL ++G+F+V S GD++LGG+DFD + + +
Sbjct: 182 LDKAVGAERNVLIFDLGGGTFSVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI-- 239
Query: 366 AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TIDM 414
A K+ KD++ R ++ L + K + S + + I +I
Sbjct: 240 AEFKRAHAKDIS---ENKRAVRRLATACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 296
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF L
Sbjct: 297 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 356
Query: 475 T-SIDPDKAVVFGAAIQANFLS 495
SI+PD+AV +GAA+QA LS
Sbjct: 357 NKSINPDEAVAYGAAVQAAILS 378
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 27/382 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
++GID GTT S V + ++ E++ + G PS V + D + +G AK ++P
Sbjct: 3 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 61
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NT+ KR I R + S +P+ N G + ++ KS P E+S+ +
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGAPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 122 TKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 307 LDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + E ++ LGGGTFD+SIL ++G+F+V S GD++LGG+DFD + + +
Sbjct: 182 LDKAVGAERNVLIFSLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI-- 239
Query: 366 AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TIDM 414
A K+ KD++ R ++ L + K + S + + I +I
Sbjct: 240 AEFKRAHAKDIS---ENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 296
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF L
Sbjct: 297 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 356
Query: 475 T-SIDPDKAVVFGAAIQANFLS 495
SI+PD+AV +GAA+QA LS
Sbjct: 357 NKSINPDEAVAYGAAVQAAILS 378
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 27/382 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
++GID GTT S V + ++ E++ + G PS V + D + +G AK ++P
Sbjct: 3 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 61
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGM--LHIKTISGIKS--PIEISAQIF 246
NT+ KR I R + S +P+ N G + ++ KS P E+S+ +
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++N PT+AAIAY
Sbjct: 122 TKMKEIAEAYLGATVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINSPTAAAIAYG 181
Query: 307 LDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + E ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + N
Sbjct: 182 LDKAVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV-----N 236
Query: 366 AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TIDM 414
F+ + K + R ++ L + K + S + + I +I
Sbjct: 237 HFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 296
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF L
Sbjct: 297 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 356
Query: 475 T-SIDPDKAVVFGAAIQANFLS 495
SI+PD+AV +GAA+QA LS
Sbjct: 357 NKSINPDEAVAYGAAVQAAILS 378
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 220/380 (57%), Gaps = 23/380 (6%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S VA +++ E++ ++ G + PS V + P+ ++ +G AK ++P+
Sbjct: 12 AIGIDLGTTYSCVATYESSV-EIIANEQGNRVTPSFVAFTPEERL-IGDAAKNQAALNPR 69
Query: 195 NTISSIKRFIAR--DLKNINTN--SFPYDFQNKFG--MLHIKTISGIK--SPIEISAQIF 246
NT+ KR I R D +++ + ++P+ + G ++ ++ + K SP EISA +
Sbjct: 70 NTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGNPVIEVQYLEETKTFSPQEISAMVL 129
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + ++ AVITVPAYFND QRQ TK+A ++GLNVLR++NEPT+AAIAY
Sbjct: 130 TKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAYG 189
Query: 307 L--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
L K+ E ++DLGGGTFD+S+L GV+ V S G+++LGG DFD L K
Sbjct: 190 LGAGKSEKERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHF-K 248
Query: 365 NAFLKKLS------YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQ 416
F KK + + L + K LS Q++V+++ L D + ++ +
Sbjct: 249 AEFKKKTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVD-SLFDGEDFESSLTRAR 307
Query: 417 FFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT- 475
F + L T+ + L DA ++ I+ V+LVGGSTR+ + + +S+FF L
Sbjct: 308 FEDLNAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEK 367
Query: 476 SIDPDKAVVFGAAIQANFLS 495
SI+PD+AV +GAA+Q L+
Sbjct: 368 SINPDEAVAYGAAVQGAILT 387
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 210/388 (54%), Gaps = 27/388 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 7 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 65
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 66 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 125
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 126 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 185
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 186 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 242
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 243 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 300
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 301 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 360
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA L G++
Sbjct: 361 RDLNKSINPDEAVAYGAAVQAAILMGDK 388
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 210/388 (54%), Gaps = 27/388 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 6 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 64
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 65 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 124
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 125 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 184
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 185 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 241
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 242 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 299
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 300 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 359
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA L G++
Sbjct: 360 RDLNKSINPDEAVAYGAAVQAAILMGDK 387
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 210/388 (54%), Gaps = 27/388 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 6 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 64
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 65 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 124
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 125 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 184
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 185 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 241
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 242 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 299
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 300 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 359
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA L G++
Sbjct: 360 RDLNKSINPDEAVAYGAAVQAAILMGDK 387
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 210/388 (54%), Gaps = 27/388 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 25 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 83
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 84 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 143
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 144 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 203
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 204 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 260
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 261 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 318
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 319 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 378
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSGNR 498
L SI+PD+AV +GAA+QA L G++
Sbjct: 379 RDLNKSINPDEAVAYGAAVQAAILMGDK 406
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 208/386 (53%), Gaps = 27/386 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 1 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 59
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 60 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 119
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 120 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 179
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 180 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 236
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 237 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 294
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 295 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 354
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSG 496
L SI+PD+AV +GAA+QA L G
Sbjct: 355 RDLNKSINPDEAVAYGAAVQAAILMG 380
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 208/386 (53%), Gaps = 27/386 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 61
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 62 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 121
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 122 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 181
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 182 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 238
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 239 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 296
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 297 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 356
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSG 496
L SI+PD+AV +GAA+QA L G
Sbjct: 357 RDLNKSINPDEAVAYGAAVQAAILMG 382
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 208/386 (53%), Gaps = 27/386 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S + + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KAAAIGIDLGTTYSCIGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 61
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 62 NPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 121
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ +K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 122 MVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 181
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 182 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 238
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 239 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 296
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 297 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 356
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSG 496
L SI+PD+AV +GAA+QA L G
Sbjct: 357 RDLNKSINPDEAVAYGAAVQAAILMG 382
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3KVG|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3L4I|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L4I|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L6Q|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
pdb|3L6Q|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
Length = 400
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 211/385 (54%), Gaps = 27/385 (7%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + RN+ +++ + G PS V + ++ +G AK +P+
Sbjct: 21 AIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERL-IGDAAKNQVARNPE 79
Query: 195 NTISSIKRFIAR--DLKNINTNSFPYDFQNKFGMLHIKTIS----GIKSPI---EISAQI 245
NT+ KR I R D + + ++ + F+ G IS G K EISA +
Sbjct: 80 NTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMV 139
Query: 246 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
+K+I+E + +I AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AAIAY
Sbjct: 140 LQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAY 199
Query: 306 KLD-KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
LD K E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V+
Sbjct: 200 GLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQ 259
Query: 365 NAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIV-----------NITID 413
+ F +K D L +R ++ L + K + S + + ++ I
Sbjct: 260 D-FKRKNRGMD---LTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAIS 315
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-T 472
+F + T+ K L DA + + +++V+LVGGSTR+ + + FF
Sbjct: 316 RARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKE 375
Query: 473 LLTSIDPDKAVVFGAAIQANFLSGN 497
+I+PD+AV +GAA+QA L+G
Sbjct: 376 PCKAINPDEAVAYGAAVQAAILNGE 400
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 207/386 (53%), Gaps = 27/386 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K +IGID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 61
Query: 192 DPKNTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIKS----PIEISA 243
+P+NT+ KR I R + S +P+ N ++ ++ P EIS+
Sbjct: 62 NPQNTVFDAKRLIGRKFGDPVVQSDXKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISS 121
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAI
Sbjct: 122 XVLTKXKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAI 181
Query: 304 AYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
AY LD+ E ++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L
Sbjct: 182 AYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV--- 238
Query: 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------T 411
N F+++ K + R ++ L + K + S + + I +
Sbjct: 239 --NHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTS 296
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
I +F + L T+ KAL DA L I++++LVGGSTR+ + + + +FF
Sbjct: 297 ITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNG 356
Query: 472 TLLT-SIDPDKAVVFGAAIQANFLSG 496
L SI+PD+AV +GAA+QA L G
Sbjct: 357 RDLNKSINPDEAVAYGAAVQAAILXG 382
>pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu
Recognition Peptide Elppvkihc
Length = 227
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 99/127 (77%)
Query: 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 566
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 567 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 626
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 627 IKSNLKD 633
I S +KD
Sbjct: 121 IASMIKD 127
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 188/373 (50%), Gaps = 22/373 (5%)
Query: 137 GIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KNT
Sbjct: 5 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKNT 63
Query: 197 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI------SGIK---SPIEISAQIFI 247
++++KR I D + + F +K L K +G K S +++A
Sbjct: 64 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 123
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y +
Sbjct: 124 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 183
Query: 308 DK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 184 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEH 243
Query: 362 IVKNAFLK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKI-VNITIDMK 415
K + + K N ++ + ++K++LS ++ +V+ + V+ + +
Sbjct: 244 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSRE 303
Query: 416 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT 475
+ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L T
Sbjct: 304 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST 363
Query: 476 SIDPDKAVVFGAA 488
+++ D+A+ GAA
Sbjct: 364 TLNQDEAIAKGAA 376
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 188/373 (50%), Gaps = 22/373 (5%)
Query: 137 GIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KNT
Sbjct: 8 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKNT 66
Query: 197 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI------SGIK---SPIEISAQIFI 247
++++KR I D + + F +K L K +G K S +++A
Sbjct: 67 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 126
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y +
Sbjct: 127 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 186
Query: 308 DK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 187 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEH 246
Query: 362 IVKNAFLK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKI-VNITIDMK 415
K + + K N ++ + ++K++LS ++ +V+ + V+ + +
Sbjct: 247 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSRE 306
Query: 416 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT 475
+ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L T
Sbjct: 307 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST 366
Query: 476 SIDPDKAVVFGAA 488
+++ D+A+ GAA
Sbjct: 367 TLNQDEAIAKGAA 379
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 188/373 (50%), Gaps = 22/373 (5%)
Query: 137 GIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KNT
Sbjct: 6 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKNT 64
Query: 197 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI------SGIK---SPIEISAQIFI 247
++++KR I D + + F +K L K +G K S +++A
Sbjct: 65 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 124
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y +
Sbjct: 125 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 184
Query: 308 DK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 185 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEH 244
Query: 362 IVKNAFLK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKI-VNITIDMK 415
K + + K N ++ + ++K++LS ++ +V+ + V+ + +
Sbjct: 245 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSRE 304
Query: 416 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT 475
+ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L T
Sbjct: 305 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST 364
Query: 476 SIDPDKAVVFGAA 488
+++ D+A+ GAA
Sbjct: 365 TLNQDEAIAKGAA 377
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 187/373 (50%), Gaps = 22/373 (5%)
Query: 137 GIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KNT
Sbjct: 6 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKNT 64
Query: 197 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI------SGIK---SPIEISAQIFI 247
++++KR I D + + F +K L K +G K S +++A
Sbjct: 65 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAXFID 124
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y +
Sbjct: 125 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 184
Query: 308 DK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
K ++ EG I A D+G ++ SI FK G KVL D + GG DFD +
Sbjct: 185 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIXAFKKGQLKVLGTACDKHFGGRDFDLAITEH 244
Query: 362 IVKNAFLK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKI-VNITIDMK 415
K + + K N ++ + ++K++LS ++ +V+ + V+ + +
Sbjct: 245 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVXNDVDVSSQLSRE 304
Query: 416 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT 475
+ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L T
Sbjct: 305 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST 364
Query: 476 SIDPDKAVVFGAA 488
+++ D+A+ GAA
Sbjct: 365 TLNQDEAIAKGAA 377
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
Length = 219
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 90/130 (69%)
Query: 504 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELV 563
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A++I V+QGE +
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 564 KNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMN 623
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 624 LDEIKSNLKD 633
DEI+ ++D
Sbjct: 121 EDEIQKMVRD 130
>pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPO|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPP|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPP|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPQ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|E Chain E, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|F Chain F, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3QNJ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|3QNJ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|4E81|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
pdb|4E81|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
Length = 219
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 89/130 (68%)
Query: 504 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELV 563
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 564 KNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMN 623
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 624 LDEIKSNLKD 633
DEI+ ++D
Sbjct: 121 EDEIQKMVRD 130
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 89/130 (68%)
Query: 504 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELV 563
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 564 KNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMN 623
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 624 LDEIKSNLKD 633
DEI+ ++D
Sbjct: 121 EDEIQKMVRD 130
>pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak,
Minimized Average Structure
pdb|2BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/131 (47%), Positives = 90/131 (68%)
Query: 503 NFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDEL 562
+ LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 18 DVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKR 77
Query: 563 VKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNM 622
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +
Sbjct: 78 AADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 137
Query: 623 NLDEIKSNLKD 633
N DEI+ ++D
Sbjct: 138 NEDEIQKMVRD 148
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
pdb|7HSC|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
Length = 159
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%)
Query: 503 NFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDEL 562
+ LLLDV PLSLGIET GG++ +I RNTTIP + FTT+ DNQ + I+V +GE +
Sbjct: 6 DLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAM 65
Query: 563 VKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITI 616
K+ +L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 66 TKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITI 119
>pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In
The Apo Form
Length = 115
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 77/110 (70%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE + + +
Sbjct: 1 DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNK 60
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK
Sbjct: 61 SLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIK 110
>pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|C Chain C, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|D Chain D, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans
Length = 151
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 87/126 (69%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 627
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 628 KSNLKD 633
++ +K+
Sbjct: 124 ENMIKE 129
>pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
pdb|3N8E|B Chain B, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
Length = 182
Score = 110 bits (275), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 87/130 (66%)
Query: 504 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELV 563
F +DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 20 FQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMA 79
Query: 564 KNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMN 623
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 80 GDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLS 139
Query: 624 LDEIKSNLKD 633
D+I++ +K+
Sbjct: 140 KDDIENMVKN 149
>pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak
Bound To The Peptide Nrllltg
Length = 135
Score = 109 bits (272), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/112 (48%), Positives = 79/112 (70%)
Query: 506 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKN 565
++DV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE + +
Sbjct: 19 MVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD 78
Query: 566 CQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
+ L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK
Sbjct: 79 NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIK 130
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
pdb|4GNI|B Chain B, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
Length = 409
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 104/402 (25%), Positives = 187/402 (46%), Gaps = 29/402 (7%)
Query: 121 ISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIY 180
++E + + V IGI FG +NS +A ++ EV+ ++ G IP+I+ Y+ DG Y
Sbjct: 1 MAESASKAAPGERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYV-DGDEY 59
Query: 181 VGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTI------- 232
G++AK +PKNT++ + + +D K+++ T++ + G + TI
Sbjct: 60 YGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEED 119
Query: 233 --SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 290
+ EI+ + L A + ++ AVIT+P F + Q+ AA A L
Sbjct: 120 AEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLE 179
Query: 291 VLRLLNEPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 348
VL+L++EP +A +AY + + I + I V DLGG D+++L ++G++ +L+ D
Sbjct: 180 VLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYE 239
Query: 349 LGGDDFDYCLFSWIVKNAFLKKLSYKD-------VNILMIKSREIKELLSYQSSVKLNVK 401
G D L K K KD + L +++ K LS ++ +V+
Sbjct: 240 YHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVE 299
Query: 402 -LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 460
L D TI+ ++ TI + + L A+ A L D++ VI+ GG++
Sbjct: 300 SLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPR 359
Query: 461 IH--------EGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494
I E +T ++++P + GAA+QA+ +
Sbjct: 360 IAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLI 401
>pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans.
pdb|3DOB|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans
Length = 152
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
>pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2
Protein From Saccharomyces Cerevisiae
Length = 152
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 71/109 (65%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITI 616
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITI 112
>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D
Precursor From C.Elegans
Length = 152
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/127 (40%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN-MNLDE 626
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI +N ++ ++
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 627 IKSNLKD 633
I+ + D
Sbjct: 124 IERMIND 130
>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|D Chain D, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 191
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 318 VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVN 377
++DLGGGTFD+SIL +G+F+V + GD++LGG+DFD L N F+++ K
Sbjct: 17 IFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLV-----NHFVEEFKRKHKK 71
Query: 378 ILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------TIDMKQFFTITQHLVN 426
+ R ++ L + K + S + + I +I +F + L
Sbjct: 72 DISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFR 131
Query: 427 RTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVF 485
T+ KAL DA L I++++LVGGSTR+ + + + +FF L SI+PD+AV +
Sbjct: 132 STLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAY 191
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 67/118 (56%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP + +D L + + Q++ HPD F S+ +Q A+V+ S +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
+ P +R+ YL L+G DL ++ + FL +Q++ RE L I+ KD+ + + ++
Sbjct: 62 RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIK 119
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
NYF+ F LP F +D LL + QK+ HPDNF S+ D+ +V+ + +N AY L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 63 KDPFLRSIYLCKLNGIDLNTK 83
KDP R+ YL L GI+ N +
Sbjct: 65 KDPLRRAEYLLSLQGIEXNAE 85
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++YF + + F +D L Y Q+ +HPD F Q+S+ ++D S K ST +N AY
Sbjct: 43 RDYFSLXDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102
Query: 62 LKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFL 93
L P R +YL KL+GI++ + + FL
Sbjct: 103 LLAPLSRGLYLLKLHGIEIPERTDYEXDRQFL 134
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
Length = 344
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 18/233 (7%)
Query: 265 VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 324
VI VP D++R+ +A AG + + L+ EP +AAI L+ G V D+GGG
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNM-VVDIGGG 157
Query: 325 TFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIK-- 382
T +++++ + + S+ + GD+ D + + V+ + + + + I+
Sbjct: 158 TTEVAVISLGS-IVTWESI----RIAGDEMDEAIVQY-VRETYRVAIGERTAERVKIEIG 211
Query: 383 ----SREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVN--RTILLSSKAL 436
S+E EL + S + L+ L K + + ++ +V RT L +
Sbjct: 212 NVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPE 271
Query: 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489
+ +++ + I L GG + ++ + + +++ S +P AV GA +
Sbjct: 272 LVSDIIERGI---FLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGM 321
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
Length = 344
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 18/232 (7%)
Query: 265 VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 324
VI VP D++R+ +A AG + + L+ EP +AAI L+ G V D+GGG
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPXAAAIGSNLNVEEPSG-NXVVDIGGG 157
Query: 325 TFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIK-- 382
T +++++ + + S+ + GD+ D + + V+ + + + + I+
Sbjct: 158 TTEVAVISLGS-IVTWESI----RIAGDEXDEAIVQY-VRETYRVAIGERTAERVKIEIG 211
Query: 383 ----SREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVN--RTILLSSKAL 436
S+E EL + S + L+ L K + + ++ +V RT L +
Sbjct: 212 NVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPE 271
Query: 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 488
+ +++ + I L GG + ++ + + +++ S +P AV GA
Sbjct: 272 LVSDIIERGI---FLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAG 320
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 4 YFDFFNLPKCF-------NIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLN 56
+++ F PK F ID L K Y Q + HPD + Q S + ST LN
Sbjct: 13 FYELF--PKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPD-------MAQQGSEQSST-LN 62
Query: 57 KAYSILKDPFLRSIYLCK-LNGIDLNTKLNLN 87
+AY LKDP RS Y+ K L IDL + N
Sbjct: 63 QAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSN 94
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 4 YFDFFNLPKCF-------NIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLN 56
+++ F PK F ID L K Y Q + HPD + Q S + ST LN
Sbjct: 5 FYELF--PKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPD-------MAQQGSEQSST-LN 54
Query: 57 KAYSILKDPFLRSIYLCK-LNGIDLNTKLNLN 87
+AY LKDP RS Y+ K L IDL + N
Sbjct: 55 QAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSN 86
>pdb|3H1Q|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutj
From Carboxydothermus Hydrogenoformans
pdb|3H1Q|B Chain B, Crystal Structure Of Ethanolamine Utilization Protein Eutj
From Carboxydothermus Hydrogenoformans
Length = 272
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
QI LK E + + +F A +P + + AGL ++ L++EP +AA
Sbjct: 75 QIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAAR 134
Query: 304 AYKLDKNIFEGIFAVYDLGGGTFDISILK 332
A ++ I V D+GGGT I++++
Sbjct: 135 ALGINDGI------VVDIGGGTTGIAVIE 157
>pdb|1EZV|C Chain C, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|C Chain C, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|N Chain N, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|C Chain C, Yeast Cytochrome Bc1 Complex
pdb|1P84|C Chain C, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|C Chain C, Yeast Cytochrome Bc1 Complex With Stigmatellin
Length = 385
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M +YF F +L F + L ++Y+ HPDN+I + + AS+ YL Y+
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWYLLPFYA 280
Query: 61 ILKD 64
IL+
Sbjct: 281 ILRS 284
>pdb|3CX5|C Chain C, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|N Chain N, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|C Chain C, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|N Chain N, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 385
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M +YF F +L F + L ++Y+ HPDN+I + + AS+ YL Y+
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWYLLPFYA 280
Query: 61 ILKD 64
IL+
Sbjct: 281 ILRS 284
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+Y+ +P+ N + K YY KK HPD +K D A K S L +AY +L
Sbjct: 8 DYYQILGVPR--NASQKEIKKAYYQLAKKYHPDT----NKDDPKAKEKFSQ-LAEAYEVL 60
Query: 63 KDPFLRSIY 71
D R Y
Sbjct: 61 SDEVKRKQY 69
>pdb|3CIN|A Chain A, Crystal Structure Of A Myo-Inositol-1-Phosphate
Synthase-Related Protein (Tm_1419) From Thermotoga
Maritima Msb8 At 1.70 A Resolution
Length = 394
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 38 IQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQM 97
+ ++KI + S + Y N S+ DP +R G+ L + NL + LE M
Sbjct: 66 VDRAKIGKKLSEVVKQYWNDVDSLTSDPEIRK-------GVHLGSVRNLPIEAEGLEDSM 118
Query: 98 KWRETLSIIKNKKDKVKFMALLQISEPDDISVKNKCVSIG-IDFGTTNSLVAIVRNNIPE 156
+E + + + + +E D + N C + + FG L+ + NN E
Sbjct: 119 TLKEAVDTL-----------VKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKE 167
Query: 157 VL 158
L
Sbjct: 168 RL 169
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 131
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 97 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 135
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 131
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 131
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 131
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 131
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTI 232
++ P T+ ++RF AR L ++ +P+D Q LHI I
Sbjct: 93 SVSPDGTVQYLERFSARVLSPLDFRRYPFDSQT----LHIYLI 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,040,415
Number of Sequences: 62578
Number of extensions: 772024
Number of successful extensions: 2094
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 136
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)