Query psy8852
Match_columns 634
No_of_seqs 499 out of 3425
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:01:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 7E-107 1E-111 788.1 48.5 501 132-634 35-552 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 1.7E-90 3.7E-95 765.8 61.9 498 132-634 26-539 (657)
3 TIGR01991 HscA Fe-S protein as 100.0 7.9E-89 1.7E-93 752.8 64.0 496 135-633 1-499 (599)
4 PRK05183 hscA chaperone protei 100.0 4.5E-89 9.8E-94 756.1 62.1 508 118-633 3-515 (616)
5 PRK13410 molecular chaperone D 100.0 5.2E-88 1.1E-92 749.7 62.3 497 133-633 2-513 (668)
6 PRK13411 molecular chaperone D 100.0 1.1E-87 2.4E-92 749.7 62.6 498 133-633 2-513 (653)
7 PTZ00400 DnaK-type molecular c 100.0 1.3E-86 2.7E-91 741.4 60.5 496 134-633 42-552 (663)
8 PLN03184 chloroplast Hsp70; Pr 100.0 2.5E-86 5.4E-91 739.1 62.9 499 131-633 37-550 (673)
9 PRK00290 dnaK molecular chaper 100.0 2E-85 4.3E-90 733.1 63.5 496 134-633 3-511 (627)
10 TIGR02350 prok_dnaK chaperone 100.0 3.3E-85 7.2E-90 729.5 62.6 497 134-633 1-509 (595)
11 PRK01433 hscA chaperone protei 100.0 5.9E-85 1.3E-89 716.3 58.7 486 118-634 3-494 (595)
12 CHL00094 dnaK heat shock prote 100.0 1.5E-84 3.2E-89 723.5 61.9 497 133-633 2-513 (621)
13 PTZ00009 heat shock 70 kDa pro 100.0 1.3E-83 2.8E-88 718.1 61.6 499 133-633 4-523 (653)
14 KOG0102|consensus 100.0 2.7E-86 5.9E-91 667.8 36.1 501 130-634 24-539 (640)
15 KOG0101|consensus 100.0 9.6E-82 2.1E-86 663.0 42.3 501 133-634 7-526 (620)
16 COG0443 DnaK Molecular chapero 100.0 1.7E-80 3.6E-85 676.9 49.2 484 133-634 5-495 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 2.8E-78 6E-83 681.1 57.8 497 135-633 1-515 (602)
18 KOG0103|consensus 100.0 3.2E-62 6.8E-67 508.5 41.9 467 135-607 3-497 (727)
19 KOG0104|consensus 100.0 1.7E-59 3.7E-64 488.5 37.2 466 133-608 22-534 (902)
20 PRK11678 putative chaperone; P 100.0 1.6E-54 3.4E-59 459.9 38.6 332 135-493 2-447 (450)
21 PRK13928 rod shape-determining 100.0 1.1E-38 2.5E-43 331.5 34.5 307 136-494 6-324 (336)
22 PRK13929 rod-share determining 100.0 2.1E-38 4.6E-43 328.4 35.5 305 135-491 6-324 (335)
23 PRK13927 rod shape-determining 100.0 7.2E-36 1.6E-40 311.1 34.8 306 135-493 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 9.3E-36 2E-40 309.5 34.2 306 136-493 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1E-34 2.2E-39 302.8 34.1 307 135-493 10-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 4E-33 8.7E-38 281.5 25.1 306 135-492 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 1.3E-29 2.9E-34 244.9 28.1 309 135-495 8-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 5E-30 1.1E-34 251.7 22.4 205 234-489 34-238 (239)
29 PRK01773 hscB co-chaperone Hsc 100.0 6.5E-31 1.4E-35 240.2 13.4 115 1-115 1-116 (173)
30 PRK15080 ethanolamine utilizat 100.0 2.3E-27 5E-32 237.1 28.9 202 239-491 66-267 (267)
31 PRK03578 hscB co-chaperone Hsc 100.0 3.3E-29 7.1E-34 230.4 13.4 110 2-111 6-115 (176)
32 PRK00294 hscB co-chaperone Hsc 100.0 2.3E-28 5E-33 223.5 13.3 112 2-114 4-115 (173)
33 PRK05014 hscB co-chaperone Hsc 100.0 3.6E-28 7.8E-33 223.3 13.1 110 2-111 1-110 (171)
34 PRK01356 hscB co-chaperone Hsc 99.9 6.1E-28 1.3E-32 220.1 11.5 107 1-109 1-108 (166)
35 TIGR01174 ftsA cell division p 99.9 3.8E-23 8.3E-28 218.1 25.3 195 274-490 157-371 (371)
36 TIGR00714 hscB Fe-S protein as 99.9 4.5E-24 9.8E-29 193.3 12.8 100 14-113 1-100 (157)
37 PRK09472 ftsA cell division pr 99.9 5.8E-22 1.3E-26 211.4 28.3 195 277-492 168-387 (420)
38 COG0849 ftsA Cell division ATP 99.8 8.9E-18 1.9E-22 174.2 27.9 320 134-494 7-381 (418)
39 COG4820 EutJ Ethanolamine util 99.8 2E-19 4.4E-24 161.2 10.6 197 244-491 76-272 (277)
40 KOG3192|consensus 99.8 3.2E-19 7E-24 152.7 8.7 110 2-112 8-117 (168)
41 cd00012 ACTIN Actin; An ubiqui 99.8 2.7E-17 5.9E-22 174.0 18.7 300 136-493 2-347 (371)
42 COG0484 DnaJ DnaJ-class molecu 99.7 4.6E-18 1E-22 171.1 7.1 69 2-79 4-72 (371)
43 smart00268 ACTIN Actin. ACTIN 99.7 6.3E-17 1.4E-21 171.4 16.1 303 135-493 3-347 (373)
44 KOG0713|consensus 99.7 2.3E-17 5E-22 161.1 6.7 67 1-74 15-81 (336)
45 PRK13917 plasmid segregation p 99.6 2E-13 4.3E-18 141.6 26.9 205 264-496 115-339 (344)
46 PF00226 DnaJ: DnaJ domain; I 99.6 6.9E-16 1.5E-20 118.9 5.3 64 3-72 1-64 (64)
47 KOG0718|consensus 99.6 1.9E-15 4E-20 151.9 7.6 67 3-73 10-76 (546)
48 PTZ00280 Actin-related protein 99.6 2E-13 4.4E-18 146.1 21.9 287 135-471 6-338 (414)
49 PRK14288 chaperone protein Dna 99.5 5.1E-15 1.1E-19 154.3 7.0 65 2-73 3-67 (369)
50 PF00022 Actin: Actin; InterP 99.5 1.3E-13 2.7E-18 147.4 16.4 306 134-493 5-367 (393)
51 PRK14296 chaperone protein Dna 99.5 1E-14 2.2E-19 152.1 7.0 64 2-73 4-67 (372)
52 TIGR03739 PRTRC_D PRTRC system 99.5 8.8E-13 1.9E-17 136.1 20.7 204 260-491 101-318 (320)
53 PTZ00281 actin; Provisional 99.5 2.5E-13 5.3E-18 143.3 16.5 300 135-492 8-349 (376)
54 PRK14282 chaperone protein Dna 99.5 2.1E-14 4.5E-19 150.1 7.1 66 2-73 4-69 (369)
55 PRK14286 chaperone protein Dna 99.5 2.3E-14 5E-19 149.6 6.9 65 2-73 4-68 (372)
56 smart00271 DnaJ DnaJ molecular 99.5 4.4E-14 9.5E-19 107.4 6.5 60 2-67 1-60 (60)
57 PTZ00004 actin-2; Provisional 99.5 4.8E-13 1E-17 141.4 16.6 298 135-492 8-351 (378)
58 PRK14279 chaperone protein Dna 99.5 2.6E-14 5.7E-19 150.0 6.7 65 2-73 9-73 (392)
59 KOG0712|consensus 99.5 4.1E-14 8.8E-19 140.7 6.9 62 2-73 4-65 (337)
60 PTZ00452 actin; Provisional 99.5 2.5E-12 5.5E-17 135.3 20.7 300 135-492 7-348 (375)
61 PTZ00466 actin-like protein; P 99.5 1.9E-12 4.2E-17 136.3 19.3 299 135-492 14-353 (380)
62 PRK14295 chaperone protein Dna 99.5 5.1E-14 1.1E-18 147.7 6.9 65 2-73 9-73 (389)
63 PRK14285 chaperone protein Dna 99.5 6.3E-14 1.4E-18 146.0 6.9 65 2-73 3-67 (365)
64 PRK14287 chaperone protein Dna 99.5 6.3E-14 1.4E-18 146.3 6.9 64 2-73 4-67 (371)
65 PRK14301 chaperone protein Dna 99.5 5.6E-14 1.2E-18 146.8 6.5 65 2-73 4-68 (373)
66 KOG0717|consensus 99.5 5.9E-14 1.3E-18 141.4 6.2 69 1-75 7-75 (508)
67 PRK14278 chaperone protein Dna 99.5 7.7E-14 1.7E-18 146.0 7.3 64 2-73 3-66 (378)
68 cd06257 DnaJ DnaJ domain or J- 99.4 1.6E-13 3.4E-18 102.3 6.3 55 3-64 1-55 (55)
69 PRK14281 chaperone protein Dna 99.4 9.5E-14 2.1E-18 146.3 7.1 65 2-73 3-67 (397)
70 PTZ00037 DnaJ_C chaperone prot 99.4 7.2E-14 1.6E-18 147.0 6.0 61 2-73 28-88 (421)
71 PRK14299 chaperone protein Dna 99.4 9.6E-14 2.1E-18 140.3 6.7 64 2-73 4-67 (291)
72 PRK14277 chaperone protein Dna 99.4 9.3E-14 2E-18 146.0 6.9 65 2-73 5-69 (386)
73 PRK14294 chaperone protein Dna 99.4 9.8E-14 2.1E-18 144.9 6.9 65 2-73 4-68 (366)
74 PRK14297 chaperone protein Dna 99.4 7.5E-14 1.6E-18 146.5 6.0 65 2-73 4-68 (380)
75 PRK14292 chaperone protein Dna 99.4 9.1E-14 2E-18 145.7 6.5 65 1-73 1-65 (371)
76 PRK14276 chaperone protein Dna 99.4 1E-13 2.2E-18 145.4 6.8 64 2-73 4-67 (380)
77 PRK14291 chaperone protein Dna 99.4 1.1E-13 2.3E-18 145.3 6.5 64 2-73 3-66 (382)
78 PRK14284 chaperone protein Dna 99.4 1.2E-13 2.7E-18 145.3 6.9 65 2-73 1-65 (391)
79 PRK14298 chaperone protein Dna 99.4 1.1E-13 2.4E-18 144.7 6.4 64 2-73 5-68 (377)
80 PRK14290 chaperone protein Dna 99.4 1.2E-13 2.7E-18 144.1 6.8 66 2-73 3-68 (365)
81 KOG0716|consensus 99.4 1.3E-13 2.8E-18 130.4 5.9 66 2-74 31-96 (279)
82 PRK14280 chaperone protein Dna 99.4 1.5E-13 3.2E-18 143.9 7.0 64 2-73 4-67 (376)
83 TIGR01175 pilM type IV pilus a 99.4 6.2E-11 1.3E-15 124.5 26.0 179 274-491 142-347 (348)
84 PRK14300 chaperone protein Dna 99.4 2.4E-13 5.2E-18 142.1 6.8 64 2-73 3-66 (372)
85 PRK10767 chaperone protein Dna 99.4 2.4E-13 5.2E-18 142.5 6.8 65 2-73 4-68 (371)
86 PRK10266 curved DNA-binding pr 99.4 2.9E-13 6.3E-18 138.0 6.9 66 1-74 3-68 (306)
87 PRK14283 chaperone protein Dna 99.4 2.7E-13 5.8E-18 142.2 6.7 64 2-73 5-68 (378)
88 KOG0719|consensus 99.4 4.2E-13 9.1E-18 123.4 6.1 67 2-73 14-80 (264)
89 PRK14293 chaperone protein Dna 99.4 5.3E-13 1.1E-17 139.8 7.2 64 2-73 3-66 (374)
90 COG1076 DjlA DnaJ-domain-conta 99.4 4.4E-13 9.6E-18 124.7 5.4 110 2-111 1-111 (174)
91 TIGR02349 DnaJ_bact chaperone 99.4 5.2E-13 1.1E-17 139.3 6.1 63 3-73 1-63 (354)
92 KOG0691|consensus 99.4 7.9E-13 1.7E-17 130.4 6.6 67 2-75 5-71 (296)
93 PTZ00341 Ring-infected erythro 99.4 2.2E-12 4.7E-17 141.8 10.6 98 2-111 573-670 (1136)
94 PF11104 PilM_2: Type IV pilus 99.4 5.4E-11 1.2E-15 124.1 20.7 179 274-491 135-339 (340)
95 PRK14289 chaperone protein Dna 99.4 8.4E-13 1.8E-17 139.1 6.9 65 2-73 5-69 (386)
96 KOG0715|consensus 99.3 1.4E-12 3E-17 130.3 6.7 69 2-78 43-111 (288)
97 KOG0721|consensus 99.3 3.3E-12 7.2E-17 116.8 7.4 68 3-79 100-167 (230)
98 PF06406 StbA: StbA protein; 99.3 1.1E-10 2.4E-15 120.2 19.5 173 290-488 141-316 (318)
99 TIGR03835 termin_org_DnaJ term 99.3 5.4E-12 1.2E-16 135.7 9.3 66 2-75 2-67 (871)
100 KOG0679|consensus 99.2 8.6E-10 1.9E-14 109.4 18.8 182 134-365 12-202 (426)
101 PHA03102 Small T antigen; Revi 99.2 1.3E-11 2.8E-16 109.9 4.6 62 3-73 6-67 (153)
102 KOG0624|consensus 99.2 1.7E-11 3.7E-16 119.6 5.3 67 2-72 394-460 (504)
103 COG2214 CbpA DnaJ-class molecu 99.2 4E-11 8.7E-16 118.0 6.4 68 1-74 5-72 (237)
104 KOG0722|consensus 99.1 4.3E-11 9.4E-16 111.3 3.5 67 2-76 33-99 (329)
105 KOG0720|consensus 99.0 3.8E-10 8.2E-15 114.4 7.3 68 2-77 235-302 (490)
106 COG5407 SEC63 Preprotein trans 99.0 2E-10 4.4E-15 115.2 5.2 73 3-79 99-171 (610)
107 PRK09430 djlA Dna-J like membr 99.0 4.3E-10 9.3E-15 111.6 5.5 62 2-65 200-263 (267)
108 COG4972 PilM Tfp pilus assembl 98.9 2.7E-07 5.9E-12 90.8 20.5 159 276-473 150-315 (354)
109 KOG0550|consensus 98.9 1.3E-09 2.9E-14 109.2 4.5 66 2-73 373-438 (486)
110 PTZ00100 DnaJ chaperone protei 98.8 3.4E-09 7.3E-14 89.2 4.3 50 3-63 66-115 (116)
111 PHA02624 large T antigen; Prov 98.8 5.4E-09 1.2E-13 111.9 4.8 62 2-72 11-72 (647)
112 COG5277 Actin and related prot 98.8 3.4E-07 7.4E-12 97.3 18.4 185 136-366 9-205 (444)
113 PRK10719 eutA reactivating fac 98.8 1.3E-07 2.9E-12 98.5 14.7 161 260-458 87-268 (475)
114 PF07520 SrfB: Virulence facto 98.7 5.6E-06 1.2E-10 93.4 24.8 311 179-495 330-836 (1002)
115 KOG0714|consensus 98.6 1.7E-08 3.6E-13 103.8 3.6 68 1-74 2-69 (306)
116 COG1924 Activator of 2-hydroxy 98.6 4.9E-05 1.1E-09 76.7 26.1 72 418-493 318-390 (396)
117 TIGR03192 benz_CoA_bzdQ benzoy 98.5 2.9E-05 6.3E-10 77.2 23.5 47 447-493 241-288 (293)
118 TIGR03286 methan_mark_15 putat 98.5 2E-05 4.3E-10 81.5 22.1 46 447-492 357-402 (404)
119 TIGR00241 CoA_E_activ CoA-subs 98.5 2.7E-06 5.9E-11 84.6 14.2 170 293-489 73-247 (248)
120 KOG1150|consensus 98.4 4.4E-07 9.6E-12 81.8 5.5 62 3-70 54-115 (250)
121 COG5269 ZUO1 Ribosome-associat 98.4 4.7E-07 1E-11 85.4 5.6 88 2-93 43-131 (379)
122 KOG0676|consensus 98.4 2.1E-06 4.5E-11 88.1 10.4 272 134-469 8-314 (372)
123 TIGR02261 benz_CoA_red_D benzo 98.3 0.00057 1.2E-08 67.2 24.7 44 448-491 214-262 (262)
124 PF08841 DDR: Diol dehydratase 98.2 2.5E-05 5.5E-10 75.2 13.8 190 283-491 104-329 (332)
125 PRK13317 pantothenate kinase; 98.1 0.00062 1.4E-08 68.3 22.1 48 445-492 222-273 (277)
126 PRK10331 L-fuculokinase; Provi 98.0 0.0004 8.7E-09 76.0 19.4 85 411-499 357-442 (470)
127 COG4457 SrfB Uncharacterized p 97.9 0.0048 1E-07 66.2 24.5 85 408-497 743-850 (1014)
128 COG1070 XylB Sugar (pentulose 97.9 0.0003 6.5E-09 77.4 16.2 81 411-495 369-450 (502)
129 KOG0797|consensus 97.7 0.00031 6.6E-09 73.0 12.1 122 234-364 195-322 (618)
130 KOG0677|consensus 97.6 0.0019 4.1E-08 61.6 14.8 193 260-469 100-318 (389)
131 KOG0568|consensus 97.6 5.4E-05 1.2E-09 70.0 3.4 54 3-64 48-102 (342)
132 KOG1789|consensus 97.6 8.6E-05 1.9E-09 82.5 5.3 53 3-63 1282-1336(2235)
133 PF06277 EutA: Ethanolamine ut 97.5 0.00086 1.9E-08 70.5 12.2 87 263-354 87-178 (473)
134 PRK15027 xylulokinase; Provisi 97.3 0.012 2.7E-07 64.6 18.4 86 411-499 355-440 (484)
135 KOG0680|consensus 97.2 0.02 4.3E-07 56.6 16.0 99 260-363 92-198 (400)
136 PF01869 BcrAD_BadFG: BadF/Bad 97.1 0.19 4.2E-06 50.6 23.7 71 418-491 196-271 (271)
137 TIGR02259 benz_CoA_red_A benzo 97.1 0.0097 2.1E-07 61.3 13.8 45 447-491 383-432 (432)
138 KOG0681|consensus 97.1 0.0092 2E-07 62.9 13.6 192 131-367 21-218 (645)
139 TIGR00555 panK_eukar pantothen 97.0 0.2 4.2E-06 50.2 21.6 46 444-489 229-278 (279)
140 PF02782 FGGY_C: FGGY family o 97.0 0.0027 5.8E-08 60.7 8.3 48 445-493 149-196 (198)
141 KOG0723|consensus 96.8 0.0021 4.5E-08 52.5 5.0 49 6-65 60-108 (112)
142 PF07743 HSCB_C: HSCB C-termin 96.7 0.0019 4.1E-08 51.5 3.9 22 88-109 2-23 (78)
143 PRK11031 guanosine pentaphosph 96.7 0.1 2.2E-06 57.3 18.4 78 276-359 93-172 (496)
144 PRK10854 exopolyphosphatase; P 96.6 0.13 2.8E-06 56.8 19.1 78 276-359 98-177 (513)
145 COG1069 AraB Ribulose kinase [ 96.5 0.054 1.2E-06 57.9 13.9 213 278-499 232-484 (544)
146 TIGR01315 5C_CHO_kinase FGGY-f 96.4 0.012 2.6E-07 65.6 9.1 87 411-498 409-495 (541)
147 PLN02669 xylulokinase 96.2 0.015 3.2E-07 64.8 8.6 76 413-493 417-492 (556)
148 KOG0431|consensus 96.2 0.0067 1.5E-07 64.9 5.4 49 16-64 400-450 (453)
149 COG4819 EutA Ethanolamine util 96.1 0.036 7.8E-07 55.0 9.4 87 263-354 89-180 (473)
150 TIGR01234 L-ribulokinase L-rib 96.0 0.026 5.7E-07 62.9 9.6 84 411-498 404-488 (536)
151 TIGR02628 fuculo_kin_coli L-fu 96.0 0.027 5.9E-07 61.5 9.4 85 411-498 361-445 (465)
152 TIGR01311 glycerol_kin glycero 95.8 0.037 8E-07 61.0 9.5 83 411-498 367-451 (493)
153 TIGR02627 rhamnulo_kin rhamnul 95.8 0.042 9.1E-07 59.9 9.7 84 411-499 355-439 (454)
154 PRK00047 glpK glycerol kinase; 95.7 0.031 6.8E-07 61.7 8.4 82 412-498 372-455 (498)
155 TIGR01312 XylB D-xylulose kina 95.7 0.049 1.1E-06 59.9 9.8 53 445-498 390-442 (481)
156 PLN02295 glycerol kinase 95.7 0.048 1E-06 60.4 9.6 53 445-498 412-464 (512)
157 PRK10640 rhaB rhamnulokinase; 95.7 0.054 1.2E-06 59.3 9.8 82 413-499 345-427 (471)
158 PTZ00294 glycerol kinase-like 95.6 0.036 7.9E-07 61.2 8.3 81 413-498 376-458 (504)
159 TIGR01314 gntK_FGGY gluconate 95.6 0.05 1.1E-06 60.2 9.4 82 413-498 371-453 (505)
160 PRK04123 ribulokinase; Provisi 95.6 0.031 6.7E-07 62.5 7.8 53 445-498 438-491 (548)
161 PRK10939 autoinducer-2 (AI-2) 95.5 0.052 1.1E-06 60.2 9.4 82 413-498 379-461 (520)
162 KOG2517|consensus 95.4 0.055 1.2E-06 58.1 8.5 53 444-497 413-465 (516)
163 smart00842 FtsA Cell division 95.3 0.25 5.3E-06 46.7 11.7 31 274-304 156-186 (187)
164 TIGR03706 exo_poly_only exopol 95.2 0.22 4.8E-06 50.9 11.8 77 277-359 88-165 (300)
165 PF14450 FtsA: Cell division p 95.1 0.05 1.1E-06 47.3 6.0 45 316-360 1-50 (120)
166 COG0248 GppA Exopolyphosphatas 95.1 0.5 1.1E-05 51.3 14.7 91 241-332 53-147 (492)
167 TIGR00744 ROK_glcA_fam ROK fam 94.7 6 0.00013 40.7 21.4 44 286-331 96-140 (318)
168 COG3426 Butyrate kinase [Energ 94.4 1.1 2.4E-05 44.0 13.3 48 443-490 294-345 (358)
169 COG1076 DjlA DnaJ-domain-conta 94.2 0.036 7.7E-07 51.7 2.8 58 3-62 114-173 (174)
170 KOG2531|consensus 94.1 0.16 3.5E-06 52.9 7.6 56 437-493 434-489 (545)
171 PF13941 MutL: MutL protein 94.0 0.46 9.9E-06 50.9 11.1 44 135-185 2-47 (457)
172 PRK09604 UGMP family protein; 93.5 11 0.00023 39.2 20.9 64 428-496 242-311 (332)
173 PRK09698 D-allose kinase; Prov 92.6 13 0.00029 37.8 23.2 37 287-324 104-140 (302)
174 PRK09557 fructokinase; Reviewe 92.6 13 0.00029 37.8 23.5 37 287-324 96-133 (301)
175 KOG0681|consensus 92.5 0.12 2.6E-06 54.8 3.8 66 428-493 539-614 (645)
176 PRK14101 bifunctional glucokin 91.8 13 0.00028 42.4 19.5 21 131-151 16-36 (638)
177 PF14450 FtsA: Cell division p 91.1 0.082 1.8E-06 46.0 0.7 60 241-304 47-119 (120)
178 PF14687 DUF4460: Domain of un 90.9 0.47 1E-05 40.4 5.1 49 17-66 7-55 (112)
179 PF02541 Ppx-GppA: Ppx/GppA ph 90.4 0.5 1.1E-05 47.9 5.8 75 278-358 75-151 (285)
180 COG0554 GlpK Glycerol kinase [ 90.1 1.1 2.4E-05 47.4 8.0 81 412-499 371-455 (499)
181 PRK09585 anmK anhydro-N-acetyl 90.0 2.7 5.9E-05 43.9 10.8 65 427-494 271-339 (365)
182 COG1548 Predicted transcriptio 89.8 4.8 0.0001 39.1 11.2 69 246-332 76-148 (330)
183 PRK03011 butyrate kinase; Prov 89.7 5.4 0.00012 41.8 12.8 46 445-490 295-344 (358)
184 TIGR03281 methan_mark_12 putat 89.6 12 0.00027 37.5 14.3 175 295-499 129-317 (326)
185 COG1521 Pantothenate kinase ty 89.4 14 0.00031 36.4 14.6 44 414-457 181-224 (251)
186 PF03702 UPF0075: Uncharacteri 88.8 0.42 9.2E-06 49.8 3.9 72 420-494 262-338 (364)
187 PF07318 DUF1464: Protein of u 88.8 7.3 0.00016 40.0 12.5 53 444-497 259-319 (343)
188 PLN02666 5-oxoprolinase 88.6 10 0.00022 46.4 15.5 76 412-490 454-531 (1275)
189 PRK14878 UGMP family protein; 87.2 32 0.00069 35.5 16.5 43 428-475 229-274 (323)
190 COG5026 Hexokinase [Carbohydra 86.7 8.7 0.00019 40.4 11.7 34 116-151 60-93 (466)
191 PRK13310 N-acetyl-D-glucosamin 86.5 40 0.00087 34.3 23.8 39 285-324 94-133 (303)
192 PF01968 Hydantoinase_A: Hydan 86.1 0.63 1.4E-05 47.3 3.2 68 420-490 216-284 (290)
193 KOG1385|consensus 82.7 3.1 6.7E-05 43.3 6.4 156 129-332 63-231 (453)
194 TIGR03723 bact_gcp putative gl 82.3 64 0.0014 33.2 19.4 57 428-489 247-309 (314)
195 PF00370 FGGY_N: FGGY family o 82.0 1.6 3.4E-05 43.1 4.0 21 134-154 1-22 (245)
196 PF02543 CmcH_NodU: Carbamoylt 81.8 45 0.00097 35.0 14.9 82 410-496 131-216 (360)
197 PRK00976 hypothetical protein; 81.6 11 0.00024 38.5 9.9 53 445-499 263-317 (326)
198 COG0145 HyuA N-methylhydantoin 79.5 2.4 5.1E-05 48.1 4.7 42 292-333 256-297 (674)
199 PRK00292 glk glucokinase; Prov 79.2 80 0.0017 32.4 22.8 42 283-324 86-138 (316)
200 PRK09605 bifunctional UGMP fam 76.7 1.3E+02 0.0028 33.5 21.6 63 428-495 233-301 (535)
201 PLN02920 pantothenate kinase 1 75.7 13 0.00028 38.9 8.4 48 444-491 296-350 (398)
202 PRK07058 acetate kinase; Provi 75.4 30 0.00064 36.5 11.0 44 422-469 299-343 (396)
203 COG0533 QRI7 Metal-dependent p 75.2 1.1E+02 0.0023 31.7 16.7 51 414-469 231-285 (342)
204 COG2377 Predicted molecular ch 75.1 36 0.00078 35.2 11.2 53 443-495 288-345 (371)
205 TIGR00143 hypF [NiFe] hydrogen 72.1 11 0.00024 43.3 7.6 48 445-492 658-711 (711)
206 smart00732 YqgFc Likely ribonu 71.8 3.9 8.4E-05 33.7 3.0 20 135-154 3-23 (99)
207 PRK10939 autoinducer-2 (AI-2) 71.1 3.5 7.6E-05 45.8 3.3 22 133-154 3-25 (520)
208 PF07865 DUF1652: Protein of u 70.5 9.8 0.00021 29.2 4.6 47 587-633 15-63 (69)
209 TIGR00016 ackA acetate kinase. 70.2 1.1E+02 0.0024 32.5 13.8 25 445-469 327-352 (404)
210 TIGR00241 CoA_E_activ CoA-subs 70.2 3.8 8.2E-05 40.6 3.0 21 134-154 1-21 (248)
211 PTZ00294 glycerol kinase-like 69.9 3.8 8.3E-05 45.3 3.3 22 133-154 2-24 (504)
212 PRK00180 acetate kinase A/prop 69.8 56 0.0012 34.7 11.6 26 444-469 322-348 (402)
213 PLN02669 xylulokinase 69.1 4.4 9.5E-05 45.3 3.5 27 129-155 4-31 (556)
214 cd06007 R3H_DEXH_helicase R3H 68.9 17 0.00038 27.0 5.5 29 263-291 16-44 (59)
215 COG1940 NagC Transcriptional r 68.8 1.4E+02 0.0031 30.4 23.5 25 130-154 3-28 (314)
216 PF03656 Pam16: Pam16; InterP 68.8 8.7 0.00019 33.5 4.5 50 6-66 62-111 (127)
217 TIGR02628 fuculo_kin_coli L-fu 67.5 4.6 0.0001 44.1 3.3 21 134-154 2-23 (465)
218 PRK15027 xylulokinase; Provisi 67.1 4.4 9.6E-05 44.5 3.1 21 134-154 1-22 (484)
219 PF08735 DUF1786: Putative pyr 66.3 75 0.0016 31.3 10.8 71 258-331 111-184 (254)
220 PRK12440 acetate kinase; Revie 65.9 1.3E+02 0.0027 32.0 13.1 43 424-470 303-346 (397)
221 KOG0678|consensus 65.2 1.7E+02 0.0036 30.0 14.0 99 262-364 107-209 (415)
222 TIGR01311 glycerol_kin glycero 64.7 5.4 0.00012 44.0 3.1 22 133-154 1-23 (493)
223 TIGR03123 one_C_unchar_1 proba 64.7 6.9 0.00015 40.1 3.6 32 298-333 116-147 (318)
224 TIGR00329 gcp_kae1 metallohydr 63.9 1.8E+02 0.0038 29.8 18.6 38 427-469 245-282 (305)
225 PLN02295 glycerol kinase 63.5 5.6 0.00012 44.1 3.0 22 134-155 1-23 (512)
226 PF03652 UPF0081: Uncharacteri 63.4 9 0.0002 33.9 3.7 21 134-154 2-22 (135)
227 PF00349 Hexokinase_1: Hexokin 62.2 27 0.00059 33.4 7.0 53 312-366 61-117 (206)
228 PRK00047 glpK glycerol kinase; 62.2 6.5 0.00014 43.4 3.2 22 133-154 5-27 (498)
229 TIGR01314 gntK_FGGY gluconate 61.4 6.5 0.00014 43.5 3.0 21 134-154 1-22 (505)
230 TIGR02259 benz_CoA_red_A benzo 60.5 7.4 0.00016 40.8 2.9 22 133-154 2-23 (432)
231 TIGR01234 L-ribulokinase L-rib 59.0 8.7 0.00019 42.8 3.5 21 134-154 2-24 (536)
232 PLN02405 hexokinase 58.6 1.8E+02 0.004 31.9 13.3 55 273-330 204-260 (497)
233 cd02640 R3H_NRF R3H domain of 58.5 38 0.00082 25.3 5.7 40 251-291 6-45 (60)
234 PRK04123 ribulokinase; Provisi 58.5 9.4 0.0002 42.7 3.7 19 133-151 3-21 (548)
235 PTZ00340 O-sialoglycoprotein e 58.4 2.4E+02 0.0051 29.4 21.5 40 425-469 248-287 (345)
236 TIGR01315 5C_CHO_kinase FGGY-f 57.3 8.8 0.00019 42.9 3.2 20 135-154 2-22 (541)
237 PLN02362 hexokinase 57.1 2.1E+02 0.0045 31.6 13.4 50 273-325 204-255 (509)
238 PF13877 RPAP3_C: Potential Mo 55.7 13 0.00028 30.5 3.1 49 53-101 8-57 (94)
239 PF00871 Acetate_kinase: Aceto 55.1 2.2E+02 0.0048 30.2 13.0 44 423-469 301-345 (388)
240 COG2192 Predicted carbamoyl tr 55.0 3.3E+02 0.0071 30.1 16.3 83 410-496 254-338 (555)
241 PF14574 DUF4445: Domain of un 54.4 58 0.0012 34.8 8.5 99 316-464 3-102 (412)
242 PLN02596 hexokinase-like 53.5 1.4E+02 0.003 32.8 11.3 57 274-333 205-263 (490)
243 COG0816 Predicted endonuclease 53.4 14 0.00029 33.0 3.1 21 133-153 2-22 (141)
244 COG2441 Predicted butyrate kin 53.2 55 0.0012 32.4 7.3 53 445-497 273-336 (374)
245 KOG2708|consensus 52.3 1.2E+02 0.0025 29.3 9.1 73 411-489 224-300 (336)
246 PTZ00107 hexokinase; Provision 52.0 1.8E+02 0.004 31.7 12.0 146 127-325 65-248 (464)
247 PF02685 Glucokinase: Glucokin 51.4 1.5E+02 0.0032 30.6 10.7 98 285-383 88-202 (316)
248 cd02641 R3H_Smubp-2_like R3H d 49.6 58 0.0013 24.3 5.5 29 263-291 17-45 (60)
249 PRK13321 pantothenate kinase; 47.8 21 0.00046 35.4 3.9 21 134-154 1-21 (256)
250 PRK00109 Holliday junction res 47.7 18 0.00039 32.2 3.0 20 134-153 5-24 (138)
251 PRK13318 pantothenate kinase; 47.3 21 0.00046 35.5 3.8 20 135-154 2-21 (258)
252 KOG2517|consensus 46.6 20 0.00044 39.0 3.6 20 132-151 5-24 (516)
253 TIGR02707 butyr_kinase butyrat 46.2 69 0.0015 33.5 7.5 45 445-489 293-341 (351)
254 PRK12379 propionate/acetate ki 45.9 3.9E+02 0.0086 28.4 12.9 20 132-151 4-23 (396)
255 PF02075 RuvC: Crossover junct 45.4 38 0.00083 30.5 4.8 24 135-158 1-26 (149)
256 cd02639 R3H_RRM R3H domain of 45.1 46 0.001 24.8 4.3 30 262-291 16-45 (60)
257 COG4012 Uncharacterized protei 44.6 1.6E+02 0.0035 29.1 8.9 83 279-366 192-277 (342)
258 PRK07157 acetate kinase; Provi 44.6 2.4E+02 0.0051 30.0 11.0 25 445-469 320-345 (400)
259 cd02646 R3H_G-patch R3H domain 44.1 62 0.0014 23.8 4.9 40 249-291 4-43 (58)
260 PF00349 Hexokinase_1: Hexokin 43.5 38 0.00082 32.4 4.7 33 275-307 169-204 (206)
261 COG4020 Uncharacterized protei 43.5 3.3E+02 0.0072 26.8 11.5 53 443-497 266-321 (332)
262 COG2971 Predicted N-acetylgluc 42.8 3.8E+02 0.0082 27.2 24.5 65 423-494 227-292 (301)
263 PRK05082 N-acetylmannosamine k 42.5 86 0.0019 31.6 7.5 48 445-492 233-287 (291)
264 KOG1369|consensus 41.7 1.3E+02 0.0028 32.7 8.6 64 268-334 185-251 (474)
265 PF14574 DUF4445: Domain of un 41.6 68 0.0015 34.3 6.6 83 405-491 288-375 (412)
266 TIGR03722 arch_KAE1 universal 40.2 4.3E+02 0.0093 27.1 20.0 53 429-486 231-289 (322)
267 PLN02914 hexokinase 39.8 5.5E+02 0.012 28.2 14.4 58 272-332 203-262 (490)
268 PRK12408 glucokinase; Provisio 38.6 24 0.00053 36.6 2.8 33 122-154 4-38 (336)
269 TIGR03286 methan_mark_15 putat 38.1 2.1E+02 0.0045 30.4 9.4 56 428-491 181-236 (404)
270 TIGR00250 RNAse_H_YqgF RNAse H 37.1 21 0.00046 31.3 1.8 17 136-152 1-17 (130)
271 PLN02377 3-ketoacyl-CoA syntha 36.5 77 0.0017 34.8 6.2 57 416-472 164-221 (502)
272 KOG1794|consensus 35.4 1E+02 0.0022 30.9 6.2 52 446-497 264-320 (336)
273 COG0837 Glk Glucokinase [Carbo 35.3 5E+02 0.011 26.4 11.6 103 284-387 91-210 (320)
274 PLN03170 chalcone synthase; Pr 35.1 1.3E+02 0.0027 32.3 7.5 54 420-473 102-156 (401)
275 PLN03173 chalcone synthase; Pr 34.6 1.3E+02 0.0027 32.1 7.4 52 422-473 100-152 (391)
276 TIGR01319 glmL_fam conserved h 34.4 44 0.00096 35.9 3.9 29 439-467 383-414 (463)
277 PRK12397 propionate kinase; Re 33.7 6.2E+02 0.013 27.0 13.0 26 444-469 320-346 (404)
278 PF07709 SRR: Seven Residue Re 33.5 27 0.00059 17.7 1.1 13 51-63 2-14 (14)
279 PRK13326 pantothenate kinase; 33.3 50 0.0011 33.0 3.9 22 133-154 6-27 (262)
280 PRK14102 nifW nitrogenase stab 32.3 88 0.0019 26.3 4.4 67 2-71 15-86 (105)
281 PLN03172 chalcone synthase fam 32.3 1.4E+02 0.003 31.9 7.2 56 418-473 96-152 (393)
282 PLN02854 3-ketoacyl-CoA syntha 31.7 1E+02 0.0023 34.0 6.3 55 418-472 182-237 (521)
283 TIGR01312 XylB D-xylulose kina 31.7 28 0.0006 38.1 2.0 20 136-155 1-21 (481)
284 PRK13320 pantothenate kinase; 31.2 56 0.0012 32.2 3.8 22 133-154 2-23 (244)
285 PF03206 NifW: Nitrogen fixati 30.9 1.3E+02 0.0027 25.4 5.2 66 2-71 15-85 (105)
286 PF01968 Hydantoinase_A: Hydan 30.8 39 0.00084 34.3 2.7 42 290-332 54-95 (290)
287 PF13446 RPT: A repeated domai 30.7 1.4E+02 0.003 22.1 5.1 26 3-30 6-31 (62)
288 KOG0724|consensus 29.7 52 0.0011 34.1 3.5 54 18-72 6-59 (335)
289 COG5026 Hexokinase [Carbohydra 29.6 57 0.0012 34.6 3.6 30 312-341 73-103 (466)
290 cd04036 C2_cPLA2 C2 domain pre 29.2 3.5E+02 0.0075 22.8 8.1 62 537-603 52-115 (119)
291 PTZ00297 pantothenate kinase; 28.7 6.5E+02 0.014 32.0 13.0 147 316-489 1216-1442(1452)
292 COG3894 Uncharacterized metal- 28.0 2.3E+02 0.0051 30.8 7.7 45 315-359 165-210 (614)
293 PF05378 Hydant_A_N: Hydantoin 28.0 74 0.0016 29.6 3.8 18 136-153 2-19 (176)
294 PF08392 FAE1_CUT1_RppA: FAE1/ 27.9 1.7E+02 0.0037 29.6 6.5 46 427-472 86-132 (290)
295 PF04312 DUF460: Protein of un 27.9 91 0.002 27.5 4.0 30 129-158 28-57 (138)
296 PLN03168 chalcone synthase; Pr 27.2 1.7E+02 0.0037 31.1 6.9 57 417-473 94-151 (389)
297 KOG2707|consensus 27.1 7.4E+02 0.016 25.8 19.4 217 242-470 82-330 (405)
298 PRK00039 ruvC Holliday junctio 27.1 55 0.0012 30.1 2.8 18 134-151 3-20 (164)
299 COG1069 AraB Ribulose kinase [ 26.8 64 0.0014 35.2 3.5 20 132-151 2-21 (544)
300 KOG1369|consensus 26.6 3.2E+02 0.007 29.7 8.7 26 312-337 84-109 (474)
301 PRK07515 3-oxoacyl-(acyl carri 26.2 1.2E+02 0.0026 32.0 5.6 48 421-470 266-313 (372)
302 COG0554 GlpK Glycerol kinase [ 25.2 60 0.0013 34.9 2.9 23 132-154 4-27 (499)
303 KOG0797|consensus 25.1 23 0.00049 38.1 -0.2 50 446-495 527-591 (618)
304 PF13941 MutL: MutL protein 25.1 1.8E+02 0.0038 31.6 6.5 45 316-360 2-47 (457)
305 PF03630 Fumble: Fumble ; Int 25.0 1.9E+02 0.0042 30.1 6.6 46 445-490 287-339 (341)
306 PTZ00288 glucokinase 1; Provis 24.2 84 0.0018 33.6 3.9 20 133-152 26-45 (405)
307 PRK13324 pantothenate kinase; 23.8 83 0.0018 31.3 3.5 20 135-154 2-21 (258)
308 TIGR02627 rhamnulo_kin rhamnul 23.7 39 0.00084 36.8 1.3 16 136-151 1-16 (454)
309 PLN02914 hexokinase 23.6 2.1E+02 0.0045 31.4 6.7 25 311-335 92-116 (490)
310 smart00732 YqgFc Likely ribonu 23.4 1.9E+02 0.0041 23.3 5.2 22 315-336 2-23 (99)
311 PF02801 Ketoacyl-synt_C: Beta 23.3 99 0.0022 26.4 3.6 46 426-471 25-72 (119)
312 PLN02362 hexokinase 23.3 2.5E+02 0.0054 31.0 7.3 26 311-336 92-117 (509)
313 PRK13331 pantothenate kinase; 23.0 1E+02 0.0022 30.5 3.9 22 133-154 7-28 (251)
314 PLN00130 succinate dehydrogena 22.9 13 0.00028 33.9 -2.1 25 129-153 53-77 (213)
315 PF04848 Pox_A22: Poxvirus A22 22.4 1.4E+02 0.0029 26.8 4.2 18 134-151 2-19 (143)
316 PLN02192 3-ketoacyl-CoA syntha 22.3 2.1E+02 0.0046 31.5 6.6 56 417-472 169-225 (511)
317 TIGR00067 glut_race glutamate 22.1 1.9E+02 0.0042 28.5 5.8 42 445-489 172-213 (251)
318 PF03309 Pan_kinase: Type III 21.9 1.1E+02 0.0024 29.1 4.0 20 135-154 1-20 (206)
319 COG2069 CdhD CO dehydrogenase/ 21.9 1.8E+02 0.0039 29.2 5.2 67 262-329 251-328 (403)
320 TIGR00671 baf pantothenate kin 21.8 92 0.002 30.7 3.4 19 136-154 2-20 (243)
321 COG1940 NagC Transcriptional r 21.6 3E+02 0.0066 27.9 7.4 55 312-366 4-58 (314)
322 PF01548 DEDD_Tnp_IS110: Trans 21.3 1.4E+02 0.0031 26.2 4.3 20 135-154 1-20 (144)
323 PRK13311 N-acetyl-D-glucosamin 21.1 90 0.0019 30.9 3.3 37 287-324 96-133 (256)
324 COG4126 Hydantoin racemase [Am 20.5 3.8E+02 0.0083 25.9 6.9 41 260-306 69-109 (230)
325 COG5418 Predicted secreted pro 20.2 3.2E+02 0.007 24.3 5.8 69 382-453 30-104 (164)
No 1
>KOG0100|consensus
Probab=100.00 E-value=6.6e-107 Score=788.09 Aligned_cols=501 Identities=40% Similarity=0.625 Sum_probs=481.7
Q ss_pred CceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC-
Q psy8852 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN- 210 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~- 210 (634)
...+|||||||||||++++.+|+++++.|.+|+|.+||+|+|.++ ++++|+.|+++...||++++++.||+||+.+++
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 367999999999999999999999999999999999999999987 799999999999999999999999999999988
Q ss_pred -cccC--CCCeEEecCCCceEEEec-----CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q psy8852 211 -INTN--SFPYDFQNKFGMLHIKTI-----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 211 -~~~~--~~~~~i~~~~~~~~~~~~-----~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 282 (634)
++.+ ++||++++.++.+++.+. .+.++|+++.+|+|..+++.|+.++|.++..+|+||||||++.||+++++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 5655 899999988888888743 24899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 283 AAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 283 aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
|..+||++++++|+||+|||++|+++......++||||+||||||+|++.+++|+|+++++.|+.++||++||.++++|+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 99999999999999999999999999987889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 363 VKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 363 ~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 436 (634)
.+.++++. .+.+++.+|+++||+||..||++.++.+.|+ +++|.+++-++||..||++..+++...+.++.++|
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl 353 (663)
T KOG0100|consen 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVL 353 (663)
T ss_pred HHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHH
Confidence 99998765 5778999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc-cCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccce
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 515 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~g 515 (634)
+++++.+.+|+.|+||||++|+|.+|++|+++| |+......||++|||+|||.+|..++|... ..++++.|++|.++|
T Consensus 354 ~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~-t~divLLDv~pLtlG 432 (663)
T KOG0100|consen 354 EDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEED-TGDIVLLDVNPLTLG 432 (663)
T ss_pred hhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccC-cCcEEEEeeccccce
Confidence 999999999999999999999999999999999 788999999999999999999999999876 789999999999999
Q ss_pred EEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC
Q psy8852 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 595 (634)
Q Consensus 516 i~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 595 (634)
|++.+|.|..||||||.+|+++++.|++..|+|..+.|.+|+||+....+|+.||.|.+.++||+|+|.++|+|+|++|.
T Consensus 433 IETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDa 512 (663)
T KOG0100|consen 433 IETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDA 512 (663)
T ss_pred eeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCeEEEEEEecCC-CCCHHHHHHhhhcC
Q psy8852 596 DGLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKSNLKDK 634 (634)
Q Consensus 596 ~g~l~v~~~~~~~g~~~~~~i~~~~-~~~~~ei~~~~~~~ 634 (634)
||+|+|++.|+++|+..+++|+++. .||+|+|++|++||
T Consensus 513 ngiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eA 552 (663)
T KOG0100|consen 513 NGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEA 552 (663)
T ss_pred CceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999985 69999999999875
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.7e-90 Score=765.79 Aligned_cols=498 Identities=39% Similarity=0.625 Sum_probs=463.7
Q ss_pred CceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC-
Q psy8852 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN- 210 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~- 210 (634)
...+||||||||||++|++.+|.++++.|..|.+.+||+|+|.++ .+++|..|......+|.++++++||+||+.+.+
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 456899999999999999999999999999999999999999765 589999999999999999999999999998776
Q ss_pred -cccC--CCCeEEe-cCCCceEEEe-cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 211 -INTN--SFPYDFQ-NKFGMLHIKT-ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 211 -~~~~--~~~~~i~-~~~~~~~~~~-~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
++.. .+||+++ ..++.+.+.. .+..++|+++.+++|++|+..++.++|.++..+|||||++|++.||+++++||+
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 3333 6899998 6677777664 356899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
.|||+++++++||+|||++|+.... .+++++|||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 9999999999999999999998765 678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec----CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 366 AFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS----DK-KIVNITIDMKQFFTITQHLVNRTILLSSKA 435 (634)
Q Consensus 366 ~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~----~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 435 (634)
|+... .+++.+.+|+.+||++|+.||....+.+.++.. +| .++.+.|||++|+++++|+++++..+++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 97654 357888999999999999999999998888742 22 468899999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccce
Q psy8852 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 515 (634)
Q Consensus 436 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~g 515 (634)
|+++++++.+|+.|+||||+||+|.|+++|+++||..+....||++|||+|||++|+.+++.. .++.+.|++|++||
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p~slg 420 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDV---KGLVLLDVTPLSLG 420 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhcccc---CceEEEeecccccc
Confidence 999999999999999999999999999999999998888899999999999999999998753 47899999999999
Q ss_pred EEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC
Q psy8852 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 595 (634)
Q Consensus 516 i~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 595 (634)
|++.++.+.+|||||++||++++..|++..|+|+.+.|.|||||+....+|..||+++|.++|+.|+|.++|+|+|++|.
T Consensus 421 ie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~ 500 (657)
T PTZ00186 421 IETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDA 500 (657)
T ss_pred ceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 596 DGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 596 ~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
||+|+|++.++.||++.+++|.++.+||++||++|++++
T Consensus 501 nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~ 539 (657)
T PTZ00186 501 NGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDS 539 (657)
T ss_pred CCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHH
Confidence 999999999999999999999988899999999999863
No 3
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=7.9e-89 Score=752.84 Aligned_cols=496 Identities=54% Similarity=0.847 Sum_probs=469.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcccC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN 214 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 214 (634)
+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+++.+++|..|+.+...+|.++++++||+||+.+.+++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~ 80 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF 80 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhc
Confidence 48999999999999999999999999999999999999987778999999999999999999999999999998775433
Q ss_pred -CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 215 -SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 215 -~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
.+||.++ ..+|.+.+...++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~ 160 (599)
T TIGR01991 81 SILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVL 160 (599)
T ss_pred ccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCce
Confidence 6799988 67788888887789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-C
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-L 371 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 371 (634)
++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++|+.++++... .
T Consensus 161 ~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~ 239 (599)
T TIGR01991 161 RLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADL 239 (599)
T ss_pred EEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999998775 67889999999999999999999999999999999999999999999999999887653 6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE
Q psy8852 372 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 451 (634)
Q Consensus 372 ~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL 451 (634)
+++.+.+|+.+||++|+.||.+..+.+.++. +|.++.++|||++|+++++|+++++..+++++|+++++.+.+|+.|+|
T Consensus 240 ~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViL 318 (599)
T TIGR01991 240 NPEDQRLLLQAARAAKEALTDAESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVL 318 (599)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEE
Confidence 7888999999999999999999998888876 788999999999999999999999999999999999999999999999
Q ss_pred EcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEecceeeEEeeCCC
Q psy8852 452 VGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 531 (634)
Q Consensus 452 vGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~li~~g~ 531 (634)
|||+|++|+|++.|++.||..+..+.||++|||.|||++|+.+++... ..++.+.|++|++||+++.++.+.+|||||+
T Consensus 319 vGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~-~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt 397 (599)
T TIGR01991 319 VGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRI-GNDLLLLDVTPLSLGIETMGGLVEKIIPRNT 397 (599)
T ss_pred ECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccc-cCceEEEEeeeeeeEEEecCCEEEEEEeCCC
Confidence 999999999999999999998888999999999999999999987654 4578999999999999999999999999999
Q ss_pred ccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEEEEEEecCCeE
Q psy8852 532 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKK 611 (634)
Q Consensus 532 ~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~g~~ 611 (634)
++|++++..|++..|+|+.+.|.||||++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+|+|++.++.+|++
T Consensus 398 ~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~ 477 (599)
T TIGR01991 398 PIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVE 477 (599)
T ss_pred cCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHHhhhc
Q psy8852 612 KFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 612 ~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
.++.|.++.+|+++||++++++
T Consensus 478 ~~~~i~~~~~l~~~~i~~~~~~ 499 (599)
T TIGR01991 478 QSIQVKPSYGLSDEEIERMLKD 499 (599)
T ss_pred EEEecccccCCCHHHHHHHHHH
Confidence 9999988889999999999876
No 4
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.5e-89 Score=756.08 Aligned_cols=508 Identities=57% Similarity=0.861 Sum_probs=473.6
Q ss_pred hhhcCCCCCcccC-CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCch
Q psy8852 118 LLQISEPDDISVK-NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196 (634)
Q Consensus 118 ~~~~~~p~~~~~p-~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~ 196 (634)
+..++.|.+.++| +++++||||||||||++|++.+|+++++.+..|++.+||+|+|.+++ ++||..|..+...+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~-~~vG~~A~~~~~~~p~~t 81 (616)
T PRK05183 3 LLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKNT 81 (616)
T ss_pred eEEecCCCCCCCcccCCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCC-EEEcHHHHHhhHhCchhh
Confidence 3456678777777 55689999999999999999999999999999999999999998765 999999999999999999
Q ss_pred hhhhhhhcCCCCCCcccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCC
Q psy8852 197 ISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFN 273 (634)
Q Consensus 197 i~~~k~~lg~~~~~~~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~ 273 (634)
++++||+||+.+.+++.. .+||.+. ..+|.+.+...++.++|+++.+++|++|++.++.++|.++.++|||||++|+
T Consensus 82 i~~~KrliG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~ 161 (616)
T PRK05183 82 ISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFD 161 (616)
T ss_pred HHHHHHHhCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCC
Confidence 999999999998775543 6799888 5688888888778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
+.||+++++||+.||++++++++||+|||++|+.... .+++++|||+||||||+|++++.++.++++++.|+..+||.+
T Consensus 162 ~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d 240 (616)
T PRK05183 162 DAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDD 240 (616)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHH
Confidence 9999999999999999999999999999999998765 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHH
Q psy8852 354 FDYCLFSWIVKNAFLKK-LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432 (634)
Q Consensus 354 id~~l~~~l~~~~~~~~-~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i 432 (634)
||..|++|+.++++... .+++.+.+|+.+||++|+.||.+..+.+.+...++ .|||++|+++++|+++++..++
T Consensus 241 ~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~-----~itr~efe~l~~~l~~~~~~~i 315 (616)
T PRK05183 241 FDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG-----EITREQFNALIAPLVKRTLLAC 315 (616)
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCC-----eEcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997665 68889999999999999999999988888753332 4999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccc
Q psy8852 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPL 512 (634)
Q Consensus 433 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 512 (634)
+++|+++++...+|+.|+||||+||+|+|++.|+++||..+..+.||++|||+|||++|+.+++..+ ..++.+.|++|+
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~-~~~~~l~dv~p~ 394 (616)
T PRK05183 316 RRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPL 394 (616)
T ss_pred HHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc-cCceEEEeeccc
Confidence 9999999999999999999999999999999999999988888899999999999999999987654 467999999999
Q ss_pred cceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEE
Q psy8852 513 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592 (634)
Q Consensus 513 ~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~ 592 (634)
+||+++.+|.+.+|||||+++|+++++.|++..|+|+.+.+.+|||++....+|..||++.|.++|+.|.|.++|+|+|+
T Consensus 395 slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 474 (616)
T PRK05183 395 SLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQ 474 (616)
T ss_pred cccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 593 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 593 ~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|.+|+|+|++.++.+|++.++.++++.+||++||++++++
T Consensus 475 ~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~ 515 (616)
T PRK05183 475 VDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKD 515 (616)
T ss_pred ECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHH
Confidence 99999999999999999999999988889999999999886
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.2e-88 Score=749.69 Aligned_cols=497 Identities=39% Similarity=0.641 Sum_probs=463.9
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
..+||||||||||++|++.+|.+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~ 81 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELD 81 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhH
Confidence 35899999999999999999999999999999999999999877789999999999999999999999999999987755
Q ss_pred cC--CCCeEEe-cCCCceEEEe--cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 287 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~--~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~a 287 (634)
.. .+||.+. ..+|.+.+.. .+..++|+++++++|++|++.++.++|.++..+|||||++|++.||+++++||+.|
T Consensus 82 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 161 (668)
T PRK13410 82 PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIA 161 (668)
T ss_pred HhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 44 6899998 6778887765 34589999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHh
Q psy8852 288 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367 (634)
Q Consensus 288 Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 367 (634)
||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|.
T Consensus 162 Gl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 162 GLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred CCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 67899999999999999999999999999999999999999999999999999987
Q ss_pred hcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-C----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 368 LKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-D----KKIVNITIDMKQFFTITQHLVNRTILLSSKALM 437 (634)
Q Consensus 368 ~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-~----g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 437 (634)
... .+++.+.+|+.+||++|+.||.+..+.+.++.. . ..++.+.|||++|+++|+++++++..+|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 367888999999999999999999988888742 2 246889999999999999999999999999999
Q ss_pred HcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEE
Q psy8852 438 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIE 517 (634)
Q Consensus 438 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~ 517 (634)
++++.+.+|+.|+||||+||+|+|++.|+++||.++....||++|||+|||++|+.+++.. +++.+.|++|+++|++
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~l~Dv~p~slgie 397 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGEL---KDLLLLDVTPLSLGLE 397 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccc---cceeEEeeccccccce
Confidence 9999999999999999999999999999999998888899999999999999999998753 4789999999999999
Q ss_pred EecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCe
Q psy8852 518 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADG 597 (634)
Q Consensus 518 ~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g 597 (634)
+.+|.+.+|||+|+++|++++..|++..|+|+.+.|.+|||++....+|..||++.|.++|+.+.|.++|+|+|++|.+|
T Consensus 398 ~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nG 477 (668)
T PRK13410 398 TIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANG 477 (668)
T ss_pred ecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 598 LLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 598 ~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|+|++.+..+|++.+++|....+||++||++++++
T Consensus 478 iL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~ 513 (668)
T PRK13410 478 ILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQE 513 (668)
T ss_pred EEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHH
Confidence 999999999999999999988889999999999875
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-87 Score=749.67 Aligned_cols=498 Identities=41% Similarity=0.621 Sum_probs=464.9
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
+.+||||||||||++|++.+|.+.++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+.+..
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 35899999999999999999999999999999999999999877779999999999999999999999999999987754
Q ss_pred cC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
.. .+||.++ ..++.+.+.+.+..++|+++.+++|++|++.|+.++|.++.++|||||++|++.||+++++||+.|||
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl 161 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGL 161 (653)
T ss_pred HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 33 7899988 77788888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
+++++++||+|||++|+......+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|...
T Consensus 162 ~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~ 241 (653)
T PRK13411 162 EVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQ 241 (653)
T ss_pred CeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876546788999999999999999999999999999999999999999999999999998754
Q ss_pred c-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-----CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8852 370 K-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDA 439 (634)
Q Consensus 370 ~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-----~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~ 439 (634)
. .+++.+.+|+.+||++|+.||.+..+.+.++.. ++.++.+.|||++|+++++|+++++..+++++|+++
T Consensus 242 ~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a 321 (653)
T PRK13411 242 EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDA 321 (653)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 467888999999999999999999988888742 235789999999999999999999999999999999
Q ss_pred CCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEE
Q psy8852 440 NLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 518 (634)
Q Consensus 440 ~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~ 518 (634)
++...+|+.|+||||+||+|+|++.|+++|| ..+..+.||++|||+|||++|+.+++.. +++.+.|++|++||++.
T Consensus 322 ~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~---~~~~~~dv~p~slgi~~ 398 (653)
T PRK13411 322 GLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIET 398 (653)
T ss_pred CCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCc---cceeeeecccceeeEEe
Confidence 9999999999999999999999999999997 5677889999999999999999998753 47899999999999999
Q ss_pred ecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCee
Q psy8852 519 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 598 (634)
Q Consensus 519 ~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~ 598 (634)
.++.+.+||+||+++|+++++.|++..|+|+.+.|.+|||++....+|..||++.+.++|+.+.|.++|+|+|++|.+|+
T Consensus 399 ~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gi 478 (653)
T PRK13411 399 LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478 (653)
T ss_pred cCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 599 LSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 599 l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|++.+..+|++..+.+.+..+||++||++++++
T Consensus 479 l~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~ 513 (653)
T PRK13411 479 LKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQE 513 (653)
T ss_pred EEEEEeeccCCceEeeEEeccccchHHHHHHHHHH
Confidence 99999999999999999988888999999999875
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.3e-86 Score=741.41 Aligned_cols=496 Identities=41% Similarity=0.626 Sum_probs=464.2
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc--
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-- 211 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~-- 211 (634)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+.+.
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 489999999999999999999999999999999999999987777999999999999999999999999999998763
Q ss_pred ccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q psy8852 212 NTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 288 (634)
Q Consensus 212 ~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aG 288 (634)
+.. .+||+++ ..+|.+.+.+.+..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 201 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAG 201 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 322 6899988 6788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhh
Q psy8852 289 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 368 (634)
Q Consensus 289 l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~ 368 (634)
++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+.
T Consensus 202 l~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 202 LDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998765 678999999999999999999999999999999999999999999999999999875
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-C---C-ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 369 KK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-D---K-KIVNITIDMKQFFTITQHLVNRTILLSSKALMD 438 (634)
Q Consensus 369 ~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-~---g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~ 438 (634)
.. .+++.+.+|+.+||++|+.||.+..+.+.++.. . | .++.++|||++|+++++|+++++..+++++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 467888999999999999999999888888742 1 2 478999999999999999999999999999999
Q ss_pred cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEE
Q psy8852 439 ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 518 (634)
Q Consensus 439 ~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~ 518 (634)
+++.+.+|+.|+||||+|++|+|++.|+++||.++....||+++||+|||++|+.+++.. +++.+.|++|++||+++
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~---~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEI---KDLLLLDVTPLSLGIET 437 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCc---cceEEEeccccceEEEe
Confidence 999999999999999999999999999999999888899999999999999999988753 47899999999999999
Q ss_pred ecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCee
Q psy8852 519 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 598 (634)
Q Consensus 519 ~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~ 598 (634)
.++.+.+|||+|+++|++++..|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 599 LSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 599 l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|++.+..+|++.+++++...+||++||++++++
T Consensus 518 l~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~ 552 (663)
T PTZ00400 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKE 552 (663)
T ss_pred EEEEEEeccCCcEEEEEeeccccccHHHHHHHHHH
Confidence 99999999999999999988889999999999875
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.5e-86 Score=739.08 Aligned_cols=499 Identities=40% Similarity=0.626 Sum_probs=465.0
Q ss_pred CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
+...+||||||||||++|++.+|.++++.|..|++.+||+|+|..++.+++|..|..+...+|.++++++|||||+.+.+
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 45679999999999999999999999999999999999999998766799999999999999999999999999999877
Q ss_pred cccC--CCCeEEe-cCCCceEEEe--cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 211 INTN--SFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 211 ~~~~--~~~~~i~-~~~~~~~~~~--~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
++.. .+||+++ ..+|.+.+.. .+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 196 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGR 196 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5443 6899998 6778877764 456899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||++||+.|++|+.++
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~ 275 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 275 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 667899999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec----C-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 366 AFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS----D-KKIVNITIDMKQFFTITQHLVNRTILLSSKA 435 (634)
Q Consensus 366 ~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~----~-g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 435 (634)
|.... .+++.+.+|+.+||++|+.||.+..+.+.++.. + +.++++.|||++|+++++++++++..+|+++
T Consensus 276 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~ 355 (673)
T PLN03184 276 FKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENA 355 (673)
T ss_pred HHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654 467889999999999999999999998888632 2 2578899999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccce
Q psy8852 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 515 (634)
Q Consensus 436 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~g 515 (634)
|+++++...+|+.|+||||+||+|.|++.|+++||..+....||++|||+|||++|+.+++.. +++.+.|++|++||
T Consensus 356 L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~~~dv~p~slg 432 (673)
T PLN03184 356 LRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEV---SDIVLLDVTPLSLG 432 (673)
T ss_pred HHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCc---cceEEEecccccce
Confidence 999999999999999999999999999999999998888889999999999999999998753 47899999999999
Q ss_pred EEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC
Q psy8852 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 595 (634)
Q Consensus 516 i~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 595 (634)
+++.++.+.+|||+|+++|++++..|++..|+|+.+.|.+|||++....+|..||++.|.++|+.+.|.++|+|+|++|.
T Consensus 433 i~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~ 512 (673)
T PLN03184 433 LETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 512 (673)
T ss_pred EEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999998999999999999999999999889999999999
Q ss_pred CeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 596 DGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 596 ~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|+|+|++.+..+|++.++++..+.+||++|+++++++
T Consensus 513 ~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~ 550 (673)
T PLN03184 513 NGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQE 550 (673)
T ss_pred CCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHH
Confidence 99999999999999999999988888999999999875
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2e-85 Score=733.15 Aligned_cols=496 Identities=43% Similarity=0.650 Sum_probs=463.8
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+...+++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 82 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQK 82 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHH
Confidence 58999999999999999999999999999999999999998667799999999999999999999999999998444444
Q ss_pred C--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCc
Q psy8852 214 N--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 290 (634)
Q Consensus 214 ~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~ 290 (634)
. .+||+++ ..+|.+.+.+++..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||++
T Consensus 83 ~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 162 (627)
T PRK00290 83 DIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLE 162 (627)
T ss_pred HhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 4 7899998 667888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc
Q psy8852 291 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370 (634)
Q Consensus 291 ~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 370 (634)
++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+...
T Consensus 163 v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 241 (627)
T PRK00290 163 VLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKEN 241 (627)
T ss_pred eEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998765 67899999999999999999999999999999999999999999999999999987654
Q ss_pred -----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-C----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy8852 371 -----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-D----KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 440 (634)
Q Consensus 371 -----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-~----g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~ 440 (634)
.+++.+.+|+.+||++|+.||.+..+.+.++.. . +.++.+.|||++|+++|+++++++...++++|+.++
T Consensus 242 ~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~ 321 (627)
T PRK00290 242 GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAG 321 (627)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999998888742 1 257889999999999999999999999999999999
Q ss_pred CCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEec
Q psy8852 441 LTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIG 520 (634)
Q Consensus 441 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 520 (634)
+...+|+.|+||||+||+|+|++.|++.||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||++..+
T Consensus 322 ~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~---~~~~~~d~~~~slgi~~~~ 398 (627)
T PRK00290 322 LSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLG 398 (627)
T ss_pred CChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCc---cceeeeeccceEEEEEecC
Confidence 9999999999999999999999999999999888899999999999999999998753 4789999999999999999
Q ss_pred ceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEE
Q psy8852 521 GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 600 (634)
Q Consensus 521 ~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~ 600 (634)
+.+.+|||+|+++|++++..|++..|+|+.+.|.+|+|++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+|+
T Consensus 399 ~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~ 478 (627)
T PRK00290 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVH 478 (627)
T ss_pred CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEE
Confidence 99999999999999999999999999999999999999999889999999999999999999988999999999999999
Q ss_pred EEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 601 IFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 601 v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|++.+..+|++.++++..+.+|++++|++++++
T Consensus 479 v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~ 511 (627)
T PRK00290 479 VSAKDKGTGKEQSITITASSGLSDEEIERMVKD 511 (627)
T ss_pred EEEEEccCCceeEEEeccccccCHHHHHHHHHH
Confidence 999999999999999988889999999999765
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.3e-85 Score=729.48 Aligned_cols=497 Identities=43% Similarity=0.648 Sum_probs=464.4
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 37999999999999999999999999999999999999998777799999999999999999999999999998865544
Q ss_pred C--CCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 214 N--SFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 214 ~--~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
. .+||.+...+|.+.+.+.+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||+++
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v 160 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEV 160 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence 3 68899667888899998888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-
Q psy8852 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 370 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~- 370 (634)
+++++||+|||++|+......+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+...
T Consensus 161 ~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 240 (595)
T TIGR02350 161 LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEG 240 (595)
T ss_pred EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998764467899999999999999999999999999999999999999999999999999887553
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-----CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy8852 371 ----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 441 (634)
Q Consensus 371 ----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-----~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~ 441 (634)
.+++.+.+|+.+||++|+.||.+..+.+.++.. ++.++.+.|||++|+++++|+++++..+++++|+++++
T Consensus 241 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~ 320 (595)
T TIGR02350 241 IDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGL 320 (595)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999988888742 13578899999999999999999999999999999999
Q ss_pred CcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEecc
Q psy8852 442 TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGG 521 (634)
Q Consensus 442 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 521 (634)
.+.+|+.|+||||+||+|+|++.|++.||.++..+.||++|||.|||++|+.+++.. +++.+.|++|++||+++.++
T Consensus 321 ~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~---~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 321 SASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDV---KDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred CHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCc---ccceeeecccceeEEEecCC
Confidence 999999999999999999999999999998888899999999999999999998753 47899999999999999999
Q ss_pred eeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEE
Q psy8852 522 LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSI 601 (634)
Q Consensus 522 ~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v 601 (634)
.+.+||++|+++|++++..|++..|+|+.+.+.+|+|++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999998899999999999999999999889999999999999999
Q ss_pred EEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 602 FAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 602 ~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
++.+..+|++.+++++.+.+||++|+++++++
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~ 509 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKE 509 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHHHH
Confidence 99999999999999988889999999999864
No 11
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.9e-85 Score=716.31 Aligned_cols=486 Identities=43% Similarity=0.674 Sum_probs=436.5
Q ss_pred hhhcCCCCCcccCC-CceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCch
Q psy8852 118 LLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196 (634)
Q Consensus 118 ~~~~~~p~~~~~p~-~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~ 196 (634)
+..+++|.+++.|+ ..++||||||||||++|++.+|.++++.|..|++.+||+|+|.+++ ++||..| +
T Consensus 3 ~~~~~~~~~~~~~~~~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~-~~vG~~A----------t 71 (595)
T PRK01433 3 IIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-FTIGNNK----------G 71 (595)
T ss_pred eEEecCCCCCCccccCceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCC-EEECchh----------h
Confidence 45677888877774 4579999999999999999999999999999999999999997654 8999987 7
Q ss_pred hhhhhhhcCCCCCCcccCCCCe----EEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCC
Q psy8852 197 ISSIKRFIARDLKNINTNSFPY----DFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAY 271 (634)
Q Consensus 197 i~~~k~~lg~~~~~~~~~~~~~----~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~ 271 (634)
++++||++|+.+.+.......+ ... ..++.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||++
T Consensus 72 i~~~KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~ 151 (595)
T PRK01433 72 LRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAH 151 (595)
T ss_pred HHHHHHHhCCCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCC
Confidence 9999999999986632211111 111 23345566667789999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccc
Q psy8852 272 FNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351 (634)
Q Consensus 272 ~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 351 (634)
|++.||+++++||+.||++++++++||+|||++|+.... ..+.+||||+||||||+|++++.++.++++++.|+..+||
T Consensus 152 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG 230 (595)
T PRK01433 152 FNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGG 230 (595)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccCh
Confidence 999999999999999999999999999999999998765 5678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHH
Q psy8852 352 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILL 431 (634)
Q Consensus 352 ~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~ 431 (634)
++||..|++|+.+++.... +. ..+..||++|+.||.+..... ..++|||++|+++++|+++++..+
T Consensus 231 ~d~D~~l~~~~~~~~~~~~-~~----~~~~~~ekaK~~LS~~~~~~~---------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 231 NDIDVVITQYLCNKFDLPN-SI----DTLQLAKKAKETLTYKDSFNN---------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHHHHHHHhcCCCC-CH----HHHHHHHHHHHhcCCCccccc---------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886433 22 233469999999998775321 178899999999999999999999
Q ss_pred HHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeecc
Q psy8852 432 SSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIP 511 (634)
Q Consensus 432 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 511 (634)
++++|++++ ..+|+.|+||||+|++|+|++.|+++||.++..+.||++|||+|||++|+.+++.. .++.+.|++|
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p 371 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH---TNSLLIDVVP 371 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc---cceEEEEecc
Confidence 999999998 56899999999999999999999999999888899999999999999999987654 3789999999
Q ss_pred ccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEE
Q psy8852 512 LSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 591 (634)
Q Consensus 512 ~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~ 591 (634)
+++||++.+|.+.+||+||+++|+++++.|++..|+|+.+.|.+|||++....+|..||++.|.++|+.|.|.++|+|+|
T Consensus 372 ~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf 451 (595)
T PRK01433 372 LSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTF 451 (595)
T ss_pred cceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 592 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 592 ~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
++|.||+|+|++.+..||++.++.|+.+.+||++||+++++++
T Consensus 452 ~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~ 494 (595)
T PRK01433 452 AIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENA 494 (595)
T ss_pred EECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999888889999999999863
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.5e-84 Score=723.52 Aligned_cols=497 Identities=43% Similarity=0.661 Sum_probs=462.3
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
..+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+++++++|..|......+|.++++++||+||+.+.++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 35899999999999999999999999999999999999999877779999999999999999999999999999987754
Q ss_pred cC--CCCeEEe-cCCCceEEEe--cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 287 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~--~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~a 287 (634)
.. .+||.+. ..+|.+.+.. .+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 44 6899998 5677777764 45689999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHh
Q psy8852 288 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367 (634)
Q Consensus 288 Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 367 (634)
|++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++|+.++|+
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFK 240 (621)
T ss_pred CCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 66789999999999999999999999999999999999999999999999999987
Q ss_pred hcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecC-----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 368 LKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----KKIVNITIDMKQFFTITQHLVNRTILLSSKALM 437 (634)
Q Consensus 368 ~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~-----g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 437 (634)
... .+++.+.+|+.+||++|+.||.+..+.+.++... +.++...|||++|+++++++++++..+|+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 320 (621)
T CHL00094 241 KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALK 320 (621)
T ss_pred HHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 3678899999999999999999998888887421 246888999999999999999999999999999
Q ss_pred HcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEE
Q psy8852 438 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIE 517 (634)
Q Consensus 438 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~ 517 (634)
++++...+|+.|+||||+||+|.|++.|+++||.++....||++|||+|||++|+.+++.. +++.+.|++|++||++
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~---~~~~~~d~~~~~lgi~ 397 (621)
T CHL00094 321 DAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEV---KDILLLDVTPLSLGVE 397 (621)
T ss_pred HcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCc---cceeeeeeeceeeeee
Confidence 9999999999999999999999999999999998888899999999999999999988753 4789999999999999
Q ss_pred EecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCe
Q psy8852 518 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADG 597 (634)
Q Consensus 518 ~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g 597 (634)
..++.+.+|||||+++|++++..|++..|+|+.+.+.+|||++....+|..||++.|.++|+.+.|.++|+|+|++|.+|
T Consensus 398 ~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~G 477 (621)
T CHL00094 398 TLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANG 477 (621)
T ss_pred ccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 598 LLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 598 ~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|+|++.+..+|++.++++.+..+|+++||++++++
T Consensus 478 il~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~ 513 (621)
T CHL00094 478 ILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKE 513 (621)
T ss_pred eEEEEEeeccCCceeeeeeccchhccHHHHHHHHHH
Confidence 999999999999999999988888999999999875
No 13
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.3e-83 Score=718.08 Aligned_cols=499 Identities=38% Similarity=0.601 Sum_probs=457.9
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN-- 210 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~-- 210 (634)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|.++ .+++|..|......+|.++++++||+||+.+++
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 34899999999999999999999999999999999999999755 589999999999999999999999999999876
Q ss_pred cccC--CCCeEEe-cCCCceEEEe--cC--cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 211 INTN--SFPYDFQ-NKFGMLHIKT--IS--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 211 ~~~~--~~~~~i~-~~~~~~~~~~--~~--~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
++.. .+||.+. ..++.+.+.+ .+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 3333 6899887 5666655543 23 47999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
|+.||++++++++||+|||++|+..... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999986542 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 363 VKNAFLKK------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 435 (634)
Q Consensus 363 ~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 435 (634)
.++|..+. .+++.+.+|+.+||++|+.||.+..+.+.++ +.+|.++.++|||++|+++++|+++++...++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986542 3678899999999999999999999999997 4678899999999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCC--CCCCCceeEeeeccc
Q psy8852 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN--RGIDDNFLLLDVIPL 512 (634)
Q Consensus 436 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~--~~~~~~~~~~~~~~~ 512 (634)
|+.++++..+|+.|+||||+||+|+|++.|+++|+ ..+....||++|||+|||++|+.+++. +. .+++.+.|++|+
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~-~~~~~~~dv~p~ 401 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQ-VQDLLLLDVTPL 401 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCcccc-ccceEEEeeccc
Confidence 99999999999999999999999999999999996 467788999999999999999999874 22 457899999999
Q ss_pred cceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEE
Q psy8852 513 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592 (634)
Q Consensus 513 ~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~ 592 (634)
+||++..++.+.+||++|+++|++++..|++..|+|+.+.|.||+|++....+|..||++.+.++|+.+.|.++|+|+|+
T Consensus 402 slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 481 (653)
T PTZ00009 402 SLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481 (653)
T ss_pred ccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999889999999
Q ss_pred ECCCeeEEEEEEEecCCeEEEEEEecC-CCCCHHHHHHhhhc
Q psy8852 593 VDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKSNLKD 633 (634)
Q Consensus 593 ~d~~g~l~v~~~~~~~g~~~~~~i~~~-~~~~~~ei~~~~~~ 633 (634)
+|.+|+|+|++.+..+|++.++++... ..|+++++++++++
T Consensus 482 id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~ 523 (653)
T PTZ00009 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNE 523 (653)
T ss_pred ECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHH
Confidence 999999999999999999999888654 56999999998764
No 14
>KOG0102|consensus
Probab=100.00 E-value=2.7e-86 Score=667.82 Aligned_cols=501 Identities=43% Similarity=0.633 Sum_probs=478.8
Q ss_pred CCCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCC
Q psy8852 130 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLK 209 (634)
Q Consensus 130 p~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~ 209 (634)
+.+.-++|||+|||+||+++..++.+.++.|..|.+.+||+|+|..++++++|..|+.+...+|.++++.-||+||+.+.
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc--ccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q psy8852 210 NI--NTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 284 (634)
Q Consensus 210 ~~--~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa 284 (634)
+. +.. -.||+++ ..||...+...+..++|.++.+++|.+++++++++++..+.+.|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 73 333 6899999 899999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
++||++++++++||+|||++|+++.. .++.++|+|+||||||++++.+.++.+++.++.||.++||++||..+..|+..
T Consensus 184 ~iagl~vlrvineptaaalaygld~k-~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKK-EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred hhccceeeccCCccchhHHhhccccc-CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 99999999999999999999999988 48899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec----CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHH
Q psy8852 365 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS----DK-KIVNITIDMKQFFTITQHLVNRTILLSSK 434 (634)
Q Consensus 365 ~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~----~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 434 (634)
.|+... .+...+.+|.+++|++|+.||...++++.+++. .| ..+++++||.+||+++.+++.+.+..+.+
T Consensus 263 ~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~ 342 (640)
T KOG0102|consen 263 EFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKK 342 (640)
T ss_pred hhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHH
Confidence 998765 578889999999999999999999999988851 22 67899999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccc
Q psy8852 435 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSL 514 (634)
Q Consensus 435 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~ 514 (634)
+|+++++...+|+.|+|+||++|+|.+++.+++.||.......||+++||.|||+++..+++.- .++.+.|+.|.++
T Consensus 343 aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geV---kdvlLLdVtpLsL 419 (640)
T KOG0102|consen 343 ALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEV---KDVLLLDVTPLSL 419 (640)
T ss_pred HHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccc---cceeeeecchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999874 4999999999999
Q ss_pred eEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEEC
Q psy8852 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 594 (634)
Q Consensus 515 gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d 594 (634)
||+..+|.|..||+||+.||++++..|++..|+|+.++|.++|||++...+|+.+|+|.+.++||.|+|.++|.|+|.+|
T Consensus 420 gietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDId 499 (640)
T KOG0102|consen 420 GIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDID 499 (640)
T ss_pred HHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 595 ADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 595 ~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
++|+++|+|.|+.+|+..++++-.+.+||++||++|++++
T Consensus 500 anGI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~ea 539 (640)
T KOG0102|consen 500 ANGIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEA 539 (640)
T ss_pred CCceeeeehhhcccCCccceEEeecCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
No 15
>KOG0101|consensus
Probab=100.00 E-value=9.6e-82 Score=662.97 Aligned_cols=501 Identities=38% Similarity=0.607 Sum_probs=468.0
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc-
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI- 211 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~- 211 (634)
..+||||||||++|++++.+|.++++.|.+|++.+||+|+|.++ +.++|..|..+...+|.++++++||++|+.+++.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 56899999999999999999999999999999999999999876 5999999999999999999999999999999883
Q ss_pred -ccC--CCCeEEe-cCCCceEEEec----CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 212 -NTN--SFPYDFQ-NKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 212 -~~~--~~~~~i~-~~~~~~~~~~~----~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
+.. +|||.+. ..++.+.+.+. ...++|+++.++.|..++..++.++|..+.++|+|||++|+..||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 333 7899998 55566777643 248899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
+.+||++++++++||+|||++|++... ....+|+|+|+||||||+|++.+.++.+.++++.++.++||.+||+.+.+|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHH
Confidence 999999999999999999999997664 2677899999999999999999999988999999999999999999999999
Q ss_pred HHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 363 VKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 363 ~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 436 (634)
...|+.+. .+++.+++|+.+||.+|+.||...++++.++ +.+|.++...|||.+|+.++.+++.++..++..+|
T Consensus 246 ~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L 325 (620)
T KOG0101|consen 246 AAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKAL 325 (620)
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 99998765 5789999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCCCCC-CCceeEeeeccccc
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGI-DDNFLLLDVIPLSL 514 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~~~~-~~~~~~~~~~~~~~ 514 (634)
+++.+++.+|+.|+||||++++|.++..++++|+ +....+.||+++||+|||++|+.+++.... ..++.+.|+.|.++
T Consensus 326 ~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~ 405 (620)
T KOG0101|consen 326 KDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSL 405 (620)
T ss_pred HhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccc
Confidence 9999999999999999999999999999999995 566688999999999999999999876431 36789999999999
Q ss_pred eEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEEC
Q psy8852 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 594 (634)
Q Consensus 515 gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d 594 (634)
||+..++.|.++|++|+.+|+++++.|++..|+|..+.|.||+||+....+|..+|.|.|.++|+.|.|.+.|+++|.+|
T Consensus 406 gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD 485 (620)
T KOG0101|consen 406 GVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 485 (620)
T ss_pred cccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCeEEEEEEecCC-CCCHHHHHHhhhcC
Q psy8852 595 ADGLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKSNLKDK 634 (634)
Q Consensus 595 ~~g~l~v~~~~~~~g~~~~~~i~~~~-~~~~~ei~~~~~~~ 634 (634)
.+|+|.|++.|+++|+..+++|.+.. .||.++|++|..++
T Consensus 486 ~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea 526 (620)
T KOG0101|consen 486 ANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEA 526 (620)
T ss_pred CCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhh
Confidence 99999999999999999999998885 69999999987653
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-80 Score=676.93 Aligned_cols=484 Identities=46% Similarity=0.651 Sum_probs=455.1
Q ss_pred ceEEEEEeCCceEEEEEEECC-eeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 211 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g-~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 211 (634)
+.+||||||||||++|++.++ .+.++.|..|.+.+||+|+|..++++++|..|+.+...+|.++++.+||++|+....
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~- 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG- 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC-
Confidence 568999999999999999988 799999999999999999998777799999999999999999999999999987211
Q ss_pred ccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 212 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 212 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
....+...++.++|+++.+++|.++++.++.+++..+..+|||||+||++.||+++++|++.||+++
T Consensus 84 -------------~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~v 150 (579)
T COG0443 84 -------------LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNV 150 (579)
T ss_pred -------------CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Confidence 0022334456899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-
Q psy8852 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 370 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~- 370 (634)
+++++||+|||++|+.+.. .+..|+|||+||||||+|++++.++.++++++.|+.++||++||.+|.+|+..+|+...
T Consensus 151 lrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~ 229 (579)
T COG0443 151 LRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGG 229 (579)
T ss_pred EEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCC
Confidence 9999999999999999988 88999999999999999999999999999999999999999999999999999997665
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q psy8852 371 ----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKD 445 (634)
Q Consensus 371 ----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~ 445 (634)
.++..+.+|+.+||++|+.||...++.+.+++ ..+.++..+|||++||.++.+++.++...+.++|.+++++..+
T Consensus 230 ~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~ 309 (579)
T COG0443 230 IDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSD 309 (579)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 45677899999999999999999999998875 3345688899999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEecceeeE
Q psy8852 446 INNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEK 525 (634)
Q Consensus 446 i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 525 (634)
|+.|+||||++|||.|++.++++||..+..+.||+++||.|||++|..+++..+ ++.+.|++|.++|++..++.+..
T Consensus 310 I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~---d~ll~Dv~plslgie~~~~~~~~ 386 (579)
T COG0443 310 IDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP---DVLLLDVIPLSLGIETLGGVRTP 386 (579)
T ss_pred CceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc---CceEEeeeeeccccccCcchhhh
Confidence 999999999999999999999999998999999999999999999999987654 88999999999999999999999
Q ss_pred EeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEEEEEE
Q psy8852 526 IIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 605 (634)
Q Consensus 526 li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~ 605 (634)
++++|+.+|.++...|++..|+|+.+.+.+++|++....+|..+|.|.+.++|+.|.|.++|+|+|.+|.+|++.|++.+
T Consensus 387 ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~ 466 (579)
T COG0443 387 IIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKD 466 (579)
T ss_pred HHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 606 KISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 606 ~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
+.+|++..++|+.+.+|++++|++|++++
T Consensus 467 ~~~~k~~~i~i~~~~~ls~~~i~~~~~~a 495 (579)
T COG0443 467 LGTGKEQSITIKASSGLSDEEIERMVEDA 495 (579)
T ss_pred ccCCceEEEEEecCCCCCHHHHHHHHHHH
Confidence 99999999999999889999999999863
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.8e-78 Score=681.10 Aligned_cols=497 Identities=39% Similarity=0.610 Sum_probs=447.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--cc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN--IN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~--~~ 212 (634)
+|||||||+||++|++.+|.++++.+..|++.+||+|+|.++ ++++|..|.....++|.++++++|+|||+.+++ ++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 699999999999999999999999999999999999999876 699999999999999999999999999998876 33
Q ss_pred cC--CCCeEEe-cCCCceEEEec--Cc--ccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTI--SG--IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~--~~--~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
.. .+||.+. ..+|.+.+.+. +. .++|+++++++|++|++.++.+++..+.++|||||++|+..||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 33 6899988 66888887754 43 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
.|||+++.+++||+|||++|+......++++||||+||||+|+|++++.++.+++++..++..+||.+||..|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999888775689999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHhcCC--cceEEEEE-ecC-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 366 AFLKK-----LSYKDVNILMIKSREIKELLSYQ--SSVKLNVK-LSD-KKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 366 ~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~--~~~~i~i~-~~~-g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 436 (634)
++... .+++.+.+|+.+||++|+.||.. ....+.++ +.+ |.++.+.|||++|+++++|+++++..+++++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 88653 57889999999999999999994 44555555 344 78999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceE
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 516 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi 516 (634)
+.+++...+|+.|+|+||+|++|+|++.|++.||..+..+.||++|||+|||++|+.+++.+. ..++.+.|++|++|||
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~-~~~~~~~d~~~~~~~i 398 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFR-VKDIKIIDVTPFSIGI 398 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCS-STSSCESEBESSEEEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccc-cccccccccccccccc
Confidence 999999999999999999999999999999999988888999999999999999999988655 5688999999999999
Q ss_pred EEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCC
Q psy8852 517 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 596 (634)
Q Consensus 517 ~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 596 (634)
+..++.+.+++++|+++|...+..|++..++|+.+.+.+|+|+.....+|..||++.+.++++.+.|.++|+|+|++|.+
T Consensus 399 ~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~ 478 (602)
T PF00012_consen 399 EVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDEN 478 (602)
T ss_dssp EETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETT
T ss_pred cccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeee
Confidence 99999999999999999999988899999999999999999999888999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 597 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 597 g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|+|++.+..++.+..+++.....+++++++++.++
T Consensus 479 Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 515 (602)
T PF00012_consen 479 GILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKK 515 (602)
T ss_dssp SEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHH
T ss_pred eehhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999999988877999999887653
No 18
>KOG0103|consensus
Probab=100.00 E-value=3.2e-62 Score=508.47 Aligned_cols=467 Identities=29% Similarity=0.440 Sum_probs=421.0
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--cc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN--IN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~--~~ 212 (634)
++|||||..+|.+|+...+..++|.|+.++|.+|++|+|.+.+ +++|..|..+...++.+++..+||++|+.+.+ ++
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~-R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKN-RFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeecccc-ceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 7999999999999999999999999999999999999998775 99999999999999999999999999999988 44
Q ss_pred cC--CCCeEEe-cCCCceEEEec----CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~----~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
.. ++|+.++ ..||.+.+.++ ...++++++++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 44 6899999 88888887743 35899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCc------cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNI------FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~------~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 359 (634)
.|||+++++++|.+|+|++|+....+ ++.+++++|+|.+++.+|++.+..|.+.++++.++..+||++||+.|.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 99999999999999999999987643 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-cCCceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q psy8852 360 SWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSS 433 (634)
Q Consensus 360 ~~l~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~ 433 (634)
+|+.++|+.+. .++++..||+..||+.|+.||.+....+.|++ .++.+.+..|+|++||+++.|+++++...+.
T Consensus 242 ~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~ 321 (727)
T KOG0103|consen 242 DHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLL 321 (727)
T ss_pred HHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHH
Confidence 99999999876 46888999999999999999999888888884 6889999999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeecccc
Q psy8852 434 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 513 (634)
Q Consensus 434 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 513 (634)
++|+++++..+||+.|.+|||+||+|.|++.|+++||+...++.|.++|||+|||++++++++.++ .+.+.+.|+.|++
T Consensus 322 ~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~fr-VRef~v~Di~pys 400 (727)
T KOG0103|consen 322 KALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFR-VREFSVEDIVPYS 400 (727)
T ss_pred HHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcccc-ceecceeccccee
Confidence 999999999999999999999999999999999999999999999999999999999999998887 7889999999999
Q ss_pred ceEEEec-----ceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecC-ccccccCceeeEEEEeCCCCCCC-CccE
Q psy8852 514 LGIETIG-----GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGE-DELVKNCQVLANFELRDIPPMPA-GRAR 586 (634)
Q Consensus 514 ~gi~~~~-----~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~~~~~~~-g~~~ 586 (634)
+.+++.. +....+||+|.++|..+..+| .+.+. +.+..+.+. ...+.....|+++++.++.+... ...+
T Consensus 401 Is~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~--~Rk~~--F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~sk 476 (727)
T KOG0103|consen 401 ISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTF--NRKGP--FTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSK 476 (727)
T ss_pred EEEEeccccccCCCceeeecCCCCCCCceEEEE--EecCc--eEEEEEeccccccCCCCCceeeEEecccccCccccccc
Confidence 9988642 455679999999997766544 44444 444444443 55555677899999988877666 3457
Q ss_pred EEEEEEECCCeeEEEEEEEec
Q psy8852 587 IKVTYQVDADGLLSIFAYEKI 607 (634)
Q Consensus 587 i~v~~~~d~~g~l~v~~~~~~ 607 (634)
++|...++..|+.+|.-....
T Consensus 477 VKvkvr~n~~Gi~~i~sA~~~ 497 (727)
T KOG0103|consen 477 VKVKVRLNEHGIDTIESATLI 497 (727)
T ss_pred eeEEEEEcCccceeeecceee
Confidence 999999999999998765443
No 19
>KOG0104|consensus
Probab=100.00 E-value=1.7e-59 Score=488.46 Aligned_cols=466 Identities=25% Similarity=0.354 Sum_probs=404.1
Q ss_pred ceEEEEEeCCceEEEEEEECCee-EEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 211 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~-~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 211 (634)
..+++||+||.+++++++.+|.| +++.|..++|++|++|+|. +|++++|..|.....++|..++..++.+||++..+.
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 46899999999999999999977 7888999999999999996 567999999999999999999999999999998872
Q ss_pred --c---cCCCCeEEe-c-CCCceEEEecC-cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 212 --N---TNSFPYDFQ-N-KFGMLHIKTIS-GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 212 --~---~~~~~~~i~-~-~~~~~~~~~~~-~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
. ..+++|+++ + ..+.+.|.+.+ ..++++++++|+|.+.+..|+.+...++.++|||||.+|++.+|+++.+|
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~A 180 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQA 180 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHH
Confidence 2 225678888 4 36888998877 69999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCc----cceEEEEEEeCCCeEEEEEEEEe----------CCeEEEEEEcCCCCc
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKNI----FEGIFAVYDLGGGTFDISILKFK----------NGVFKVLSVGGDSNL 349 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~~----~~~~vlV~D~GggT~dvsv~~~~----------~~~~~v~~~~~~~~l 349 (634)
|++||++++.+|++-+|||+.|+..+++ .+.+++|||+|+|+|.++++.+. ...+.+++.+.+..+
T Consensus 181 a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tL 260 (902)
T KOG0104|consen 181 AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260 (902)
T ss_pred HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCcc
Confidence 9999999999999999999999998753 67899999999999999999883 147889999999999
Q ss_pred cchhHHHHHHHHHHHHHhhcc-------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHH
Q psy8852 350 GGDDFDYCLFSWIVKNAFLKK-------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTIT 421 (634)
Q Consensus 350 GG~~id~~l~~~l~~~~~~~~-------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~ 421 (634)
||..|..+|.+++.+.|.... .+++++.+|.++|+++|..||.+..+.+.|+ +.++.|+..+|||++||++|
T Consensus 261 GG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc 340 (902)
T KOG0104|consen 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELC 340 (902)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHH
Confidence 999999999999999997654 5799999999999999999999999999998 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccC-CcCCCCChhhHHHHHHHHHHhHhcCCCCC
Q psy8852 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPDKAVVFGAAIQANFLSGNRGI 500 (634)
Q Consensus 422 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~~~~~p~~ava~GAa~~a~~~~~~~~~ 500 (634)
.++..++..+|+++|..++++..+|+.|+|+||++|+|.||+.|.++.|. ++....|.+||+++||+++|+.++..++
T Consensus 341 ~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK- 419 (902)
T KOG0104|consen 341 ADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK- 419 (902)
T ss_pred HHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc-
Confidence 99999999999999999999999999999999999999999999999986 4567899999999999999999999998
Q ss_pred CCceeEeeeccccceEEEecc--------eeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEE
Q psy8852 501 DDNFLLLDVIPLSLGIETIGG--------LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANF 572 (634)
Q Consensus 501 ~~~~~~~~~~~~~~gi~~~~~--------~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~ 572 (634)
.+++.+.|.+.++|-++..+. .-..+|+++.++|..+...|+-+.|+ +.+.+=.|.- . ..+..+
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~---~--~nl~~v 491 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDL---G--QNLTTV 491 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhh---c--cCccEE
Confidence 778999999999988876543 22348999999999876666544443 2222211110 0 224466
Q ss_pred EEeCCCCC----CC---CccEEEEEEEECCCeeEEEEEEEecC
Q psy8852 573 ELRDIPPM----PA---GRARIKVTYQVDADGLLSIFAYEKIS 608 (634)
Q Consensus 573 ~l~~~~~~----~~---g~~~i~v~~~~d~~g~l~v~~~~~~~ 608 (634)
+++++... +. ...-|+++|.+|..|++.|+..+..+
T Consensus 492 elsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~ 534 (902)
T KOG0104|consen 492 ELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVF 534 (902)
T ss_pred EEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEE
Confidence 66665432 11 12349999999999999998866543
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.6e-54 Score=459.91 Aligned_cols=332 Identities=24% Similarity=0.294 Sum_probs=288.3
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEe----------------------------------------
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL---------------------------------------- 174 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~---------------------------------------- 174 (634)
++|||||||||++|++.+|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999994
Q ss_pred cCCcEEecHhHHhhhccCCCch--hhhhhhhcCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHH
Q psy8852 175 PDGKIYVGKKAKITQNIDPKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 252 (634)
Q Consensus 175 ~~~~~~~G~~A~~~~~~~~~~~--i~~~k~~lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~ 252 (634)
.++..++|..|...+..+|..+ +.++|++||...-.. .....++++++.+|++|++.
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~---------------------~~~~~~e~l~a~iL~~lk~~ 140 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP---------------------QQVALFEDLVCAMMLHIKQQ 140 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc---------------------cceeCHHHHHHHHHHHHHHH
Confidence 2445789999999999999888 789999999763210 12345899999999999999
Q ss_pred HHHHhCCCcCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCC
Q psy8852 253 AENAVNNRIFGAVITVPAYFN-----DIQRQF---TKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 324 (634)
Q Consensus 253 a~~~~~~~~~~~viTVPa~~~-----~~qr~~---l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Ggg 324 (634)
++.++|.++.++|||||++|+ +.||++ +++||+.||++++.+++||+|||++|+.... .++.+||+|+|||
T Consensus 141 ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~D~GGG 219 (450)
T PRK11678 141 AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVVDIGGG 219 (450)
T ss_pred HHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEEEeCCC
Confidence 999999999999999999998 777765 7999999999999999999999999987654 6788999999999
Q ss_pred eEEEEEEEEeCC-------eEEEEEEcCCCCccchhHHHHHH-HHHHHHHhhcc--------------------------
Q psy8852 325 TFDISILKFKNG-------VFKVLSVGGDSNLGGDDFDYCLF-SWIVKNAFLKK-------------------------- 370 (634)
Q Consensus 325 T~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~id~~l~-~~l~~~~~~~~-------------------------- 370 (634)
|+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|+...
T Consensus 220 T~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~ 298 (450)
T PRK11678 220 TTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQS 298 (450)
T ss_pred eEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhh
Confidence 999999999654 367999988 6899999999998 57776664110
Q ss_pred ------------------CCHHHH------------HHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHH
Q psy8852 371 ------------------LSYKDV------------NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTI 420 (634)
Q Consensus 371 ------------------~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~ 420 (634)
.+++.+ .+|+.+||++|+.||.+..+++.++.. +.++..+|||++|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~-~~~~~~~ItR~efe~i 377 (450)
T PRK11678 299 DFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFI-SDGLATEISQQGLEEA 377 (450)
T ss_pred hhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEeccc-CCCcceeeCHHHHHHH
Confidence 122222 368899999999999999999888753 3468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 421 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 421 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
++++++++..+++++|+++++. ++.|+||||+|++|.|++.+++.||.......+|.++||.|+|++|..
T Consensus 378 i~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 378 ISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHh
Confidence 9999999999999999999875 589999999999999999999999876667789999999999999864
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.1e-38 Score=331.52 Aligned_cols=307 Identities=23% Similarity=0.311 Sum_probs=244.1
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-Cc-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
+||||||++|+++.. ++..++. .||+|++..+ +. ..+|.+|+....+.|.+... .++
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~~p------ 64 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------IRP------ 64 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------Ecc------
Confidence 899999999999876 4445664 7999999854 23 47999997766555544321 011
Q ss_pred CCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceee
Q psy8852 214 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293 (634)
Q Consensus 214 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~ 293 (634)
..++.+...+++..+|+++.+.+..........+|||||++|+..+|+++++|++.||++.+.
T Consensus 65 -----------------i~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~ 127 (336)
T PRK13928 65 -----------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVY 127 (336)
T ss_pred -----------------CCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceE
Confidence 112455666788888888886654322223346999999999999999999999999999999
Q ss_pred eecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCH
Q psy8852 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 373 (634)
Q Consensus 294 li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~ 373 (634)
+++||+|||++|+.... .+..++|||+||||||+++++.+... ..++.++||++||+.|.+++.++++... .
T Consensus 128 li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~~-~- 199 (336)
T PRK13928 128 LIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLLI-G- 199 (336)
T ss_pred ecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchhc-C-
Confidence 99999999999988665 56678999999999999999876421 3457899999999999999998875432 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCc----ceEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcC
Q psy8852 374 KDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN--LTIK 444 (634)
Q Consensus 374 ~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~--~~~~ 444 (634)
...||++|+.++... ...+.+. +..|....++|+|++|++++.+.++++.+.+++.|+.++ +...
T Consensus 200 ------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~ 273 (336)
T PRK13928 200 ------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSAD 273 (336)
T ss_pred ------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHh
Confidence 257999999987542 2334432 234566789999999999999999999999999999986 3445
Q ss_pred CCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 445 DIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 445 ~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
.++ .|+|+||+|++|.+++.|++.|+.++....||+++||+||++++..+
T Consensus 274 ~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 274 IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 677 79999999999999999999999998888999999999999998654
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.1e-38 Score=328.36 Aligned_cols=305 Identities=24% Similarity=0.330 Sum_probs=247.8
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCc--EEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~--~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.+||||||+++++ +.+++..++ + .||+|+++.++. ..+|.+|+....+.|.++... ++.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------~pi---- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------RPM---- 66 (335)
T ss_pred eEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------ecC----
Confidence 4899999999975 455555444 2 599999986543 689999998887777665421 111
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcC--cEEEEeCCCCCHHHHHHHHHHHHHcCCc
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIF--GAVITVPAYFNDIQRQFTKNAAKLAGLN 290 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~--~~viTVPa~~~~~qr~~l~~aa~~aGl~ 290 (634)
..+.+...++++.+|++++..++..++..+. .+|||||++|+..||+++.+|++.||++
T Consensus 67 -------------------~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~ 127 (335)
T PRK13929 67 -------------------KDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAK 127 (335)
T ss_pred -------------------CCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 1234556689999999999998877776554 7999999999999999999999999999
Q ss_pred eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc
Q psy8852 291 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370 (634)
Q Consensus 291 ~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 370 (634)
.+.+++||+|||++|+.... .+..++|+|+||||||++++...+.. ..++..+||.+||+.|.+++.+.++...
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~~~~~ 201 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKYNLLI 201 (335)
T ss_pred eeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 99999999999999987655 56778999999999999999875421 3456789999999999999988765332
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCc----ceEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q psy8852 371 LSYKDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT- 442 (634)
Q Consensus 371 ~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~- 442 (634)
+ ...||++|+.++... ...+.+. +..+....+++++++|++++.+.+.++.+.+++.|++++..
T Consensus 202 -~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l 273 (335)
T PRK13929 202 -G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPEL 273 (335)
T ss_pred -C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 1 267999999998732 2233332 23455678999999999999999999999999999998643
Q ss_pred -cCCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 443 -IKDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 443 -~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
...++ .|+|+||+|++|.+.+++++.|+.++....||+++|+.||+..-
T Consensus 274 ~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 274 SGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred chhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 35567 69999999999999999999999998888999999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.2e-36 Score=311.07 Aligned_cols=306 Identities=23% Similarity=0.305 Sum_probs=236.2
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-Cc-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.|||||||++++++.. |+..++ .+||+|++.++ +. +.+|.+|.....+.|.++... .+
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------~p----- 66 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------RP----- 66 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------ec-----
Confidence 5899999999998553 333344 38999999765 33 589999987766555433210 01
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
..++.+.-.+.+..+++++......... ....+|+|||++|+..+|++++.|++.+|++.+
T Consensus 67 ------------------i~~G~i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~ 127 (334)
T PRK13927 67 ------------------MKDGVIADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGAREV 127 (334)
T ss_pred ------------------CCCCeecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCee
Confidence 1122333345566677776665443322 223799999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
.+++||+|||++|+.... ....++|+|+||||||+++++..+.. ..+...+||++||+.|.+++.++++... +
T Consensus 128 ~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 200 (334)
T PRK13927 128 YLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYNLLI-G 200 (334)
T ss_pred ccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhCcCc-C
Confidence 999999999999987654 55678999999999999999876532 2455789999999999999998775432 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc----eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c
Q psy8852 373 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT--I 443 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~--~ 443 (634)
...||++|+.++.... ..+.+. ...|.+..+.|+|++|++++.+.+.++.+.+.++|++++.. .
T Consensus 201 -------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~ 273 (334)
T PRK13927 201 -------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAA 273 (334)
T ss_pred -------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhh
Confidence 2568999999976432 334442 12456678899999999999999999999999999988643 2
Q ss_pred CCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 444 KDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 444 ~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
..++ .|+|+||+|++|.++++|++.|+.++....||+++||+||++++..
T Consensus 274 ~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 274 DIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred hhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 2234 5999999999999999999999999888899999999999999764
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=9.3e-36 Score=309.54 Aligned_cols=306 Identities=25% Similarity=0.307 Sum_probs=233.3
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC----Cc--EEecHhHHhhhccCCCchhhhhhhhcCCCCC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD----GK--IYVGKKAKITQNIDPKNTISSIKRFIARDLK 209 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~----~~--~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~ 209 (634)
+||||||++|+++....| .++ ..||+|++..+ .. +.+|.+|.....+.|.++. +++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC-----
Confidence 899999999998875433 344 38999999754 22 6799999776555443332 11111
Q ss_pred CcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 210 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
.++.+...+.+..+++++.....+..+.....+|+|||++|+..+|+++++|++.+|+
T Consensus 69 ----------------------~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~ 126 (333)
T TIGR00904 69 ----------------------KDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGA 126 (333)
T ss_pred ----------------------CCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 1223333455666677766554432222223799999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
+.+.+++||+|||++|+.... .+..++|+|+||||||+++++..+.. ..++..+||++||+.|.+++.++++..
T Consensus 127 ~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~~~~ 200 (333)
T TIGR00904 127 REVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYNLL 200 (333)
T ss_pred CeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHhccc
Confidence 999999999999999987554 56678999999999999999876522 245678999999999999998776432
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcc-----eEEEEEe---cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSS-----VKLNVKL---SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 441 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~---~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~ 441 (634)
. + +..||++|+.++.... ..+.+.. ..+....+.|+++++.+++.+.+.++.+.+.+.++.++.
T Consensus 201 ~-~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~ 272 (333)
T TIGR00904 201 I-G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPP 272 (333)
T ss_pred C-C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2 1 3679999999976432 2222211 123445678999999999999999999999999998874
Q ss_pred Cc-CCC-C-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 442 TI-KDI-N-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 442 ~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
.. .++ + .|+|+||+|++|.+++.|++.|+.++....||+++||.||++++..
T Consensus 273 ~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 273 ELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred hhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 42 233 3 7999999999999999999999999988999999999999999653
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1e-34 Score=302.82 Aligned_cols=307 Identities=23% Similarity=0.270 Sum_probs=238.6
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-C-cEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-G-KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~-~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.+||||||++|+++++.++ .++ .+||+|++..+ + ..++|.+|.......|.+.- ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~----------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI----------- 67 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee-----------
Confidence 3999999999999886433 233 26999999753 3 36899999876654443221 00
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
.| ..++.+...+.+..+|+++.+.+..........+|+|+|++|+..+|+++.++++.+|++.+
T Consensus 68 ---~p-------------i~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~ 131 (335)
T PRK13930 68 ---RP-------------LKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREV 131 (335)
T ss_pred ---ec-------------CCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeE
Confidence 01 11233444567888888888766554444467899999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
.+++||+|||++|+.... ....++|+|+||||||++++..+... ..+...+||.+||+.|.+++.++++... +
T Consensus 132 ~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 204 (335)
T PRK13930 132 YLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYNLLI-G 204 (335)
T ss_pred EecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhCCCC-C
Confidence 999999999999987654 44567999999999999999876422 2456899999999999999988765322 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc----eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c
Q psy8852 373 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT--I 443 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~--~ 443 (634)
...||++|+.++.... ..+.+. ...|....+.|++++|++++.+.++++.+.+.++|+.++.. .
T Consensus 205 -------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~ 277 (335)
T PRK13930 205 -------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAA 277 (335)
T ss_pred -------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhh
Confidence 2578999999976543 223332 12445568899999999999999999999999999987533 2
Q ss_pred CCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 444 KDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 444 ~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
..++ .|+|+||+|++|.++++|++.|+.++....+|+++||.||++.+..
T Consensus 278 ~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 278 DIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 2345 4999999999999999999999999888889999999999999864
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=4e-33 Score=281.54 Aligned_cols=306 Identities=26% Similarity=0.316 Sum_probs=227.0
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC-c-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-K-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~-~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
-+||||||+++.++. .++-.++. .||+|+++.+. + ..+|.+|.....+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 489999999998855 33333443 69999998753 2 569999965544444221 1
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
+ ...+.++.+.-.+++..+|+++.+.+.......-..++++||+..++.+|+++.+|+..+|.+.+
T Consensus 59 -------~-------~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V 124 (326)
T PF06723_consen 59 -------V-------VRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKV 124 (326)
T ss_dssp -------E-------E-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEE
T ss_pred -------E-------EccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 1 11134567777889999999999988763233446799999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
.+++||.|||+..+..-. .+...||+|+||||||++++...+ ++.+. ....||++||+.|.+|++++++...
T Consensus 125 ~li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislgg----iv~s~-si~~gG~~~DeaI~~~ir~~y~l~I-- 196 (326)
T PF06723_consen 125 YLIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGG----IVASR-SIRIGGDDIDEAIIRYIREKYNLLI-- 196 (326)
T ss_dssp EEEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTE----EEEEE-EES-SHHHHHHHHHHHHHHHHSEE---
T ss_pred EEecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCC----EEEEE-EEEecCcchhHHHHHHHHHhhCccc--
Confidence 999999999999988876 667789999999999999996543 22222 3688999999999999999996443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc----eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-C
Q psy8852 373 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI-K 444 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~-~ 444 (634)
=...||++|+.++.... ..+.+. +.+|....+.|+.+++.+++.+.+.++.+.++++|++..... .
T Consensus 197 ------g~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~ 270 (326)
T PF06723_consen 197 ------GERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAA 270 (326)
T ss_dssp -------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred ------CHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 12678999999876432 345553 467889999999999999999999999999999999865331 2
Q ss_pred CC--CeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DI--NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i--~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
|| ++|+|+||+|+++.+.+.|++.++.++....||..+||.||.....
T Consensus 271 DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 271 DILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 33 6799999999999999999999999999999999999999997654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.3e-29 Score=244.93 Aligned_cols=309 Identities=24% Similarity=0.297 Sum_probs=245.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC----cEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG----KIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
.+|||+||.||.++.- |+--++ .-||+|++..++ -..+|.+| |+++|+...+
T Consensus 8 diGIDLGTanTlV~~k--~kgIVl-------~ePSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~n 63 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPGN 63 (342)
T ss_pred cceeeecccceEEEEc--CceEEe-------cCceEEEEeecCCCceEEEehHHH---------------HHHhccCCCC
Confidence 5899999999998764 332244 379999998732 15789999 6667766544
Q ss_pred cccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhC-CCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 211 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVN-NRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 211 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~-~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
+... -...++.+.-.+++..+++|+++......+ ....+++++||..-++-+|+++++|++.||.
T Consensus 64 i~ai--------------RPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa 129 (342)
T COG1077 64 IVAI--------------RPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGA 129 (342)
T ss_pred ceEE--------------eecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccC
Confidence 2111 113346777788999999999998765433 3444799999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
..+.++.||.|||+..+..-. .+..-+|+|+||||||++++.+.+-. . +....+||+.||+.+.+|+.++|+.-
T Consensus 130 ~~V~lieEp~aAAIGaglpi~-ep~G~mvvDIGgGTTevaVISlggiv----~-~~Sirv~GD~~De~Ii~yvr~~~nl~ 203 (342)
T COG1077 130 REVYLIEEPMAAAIGAGLPIM-EPTGSMVVDIGGGTTEVAVISLGGIV----S-SSSVRVGGDKMDEAIIVYVRKKYNLL 203 (342)
T ss_pred ceEEEeccHHHHHhcCCCccc-CCCCCEEEEeCCCceeEEEEEecCEE----E-EeeEEEecchhhHHHHHHHHHHhCee
Confidence 999999999999998877665 44456899999999999999988732 2 33478999999999999999999865
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcc------eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSS------VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 440 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~ 440 (634)
.- -..+|++|........ .++.+. +..|..-.++++.+++.+.+++.++.|.+.++..|++..
T Consensus 204 IG--------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tp 275 (342)
T COG1077 204 IG--------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTP 275 (342)
T ss_pred ec--------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 41 1347888888754322 234443 356778889999999999999999999999999999875
Q ss_pred CC--cCCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhc
Q psy8852 441 LT--IKDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 441 ~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~ 495 (634)
.. .+-++ .++|+||+|.+..+.+.+++..+.++....+|..|||.|+......+.
T Consensus 276 PeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 276 PELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred chhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 33 22234 499999999999999999999999999999999999999998876553
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=5e-30 Score=251.70 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=176.5
Q ss_pred cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccc
Q psy8852 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 313 (634)
Q Consensus 234 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~ 313 (634)
+.+...+.++.+|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++.+.++.||.|||++|...
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 355566889999999999998888988999999999999999999999999999999999999999999998643
Q ss_pred eEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC
Q psy8852 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 393 (634)
Q Consensus 314 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 393 (634)
..+|+|+||||||+++++.+. ++. ..+..+||++||+.|.+.+. .. +.+||++|+.++
T Consensus 109 -~~~vvDiGggtt~i~i~~~G~----i~~-~~~~~~GG~~it~~Ia~~~~----i~----------~~~AE~~K~~~~-- 166 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKKGK----VIY-SADEPTGGTHMSLVLAGAYG----IS----------FEEAEEYKRGHK-- 166 (239)
T ss_pred -CcEEEEeCCCcEEEEEEECCe----EEE-EEeeecchHHHHHHHHHHhC----CC----------HHHHHHHHHhcC--
Confidence 259999999999999976433 222 34578999999998875432 22 378899998754
Q ss_pred cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCc
Q psy8852 394 SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 394 ~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 473 (634)
+.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|++++.+++.||.++
T Consensus 167 -------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v 222 (239)
T TIGR02529 167 -------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNV 222 (239)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCc
Confidence 246778899999999999999999864 46799999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHH
Q psy8852 474 LTSIDPDKAVVFGAAI 489 (634)
Q Consensus 474 ~~~~~p~~ava~GAa~ 489 (634)
..+.||++++|.|||+
T Consensus 223 ~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 223 IKPQHPLYVTPLGIAM 238 (239)
T ss_pred ccCCCCCeehhheeec
Confidence 9999999999999986
No 29
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.97 E-value=6.5e-31 Score=240.19 Aligned_cols=115 Identities=39% Similarity=0.603 Sum_probs=106.2
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc-CCC
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GID 79 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~-~~~ 79 (634)
|+|||++||||++|++|...|+++|++||+++|||+|+++++.++..+.++++.||+||+||+||.+||.|+|.|+ |.+
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~ 80 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQ 80 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 877
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHhhcchhhhH
Q psy8852 80 LNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKF 115 (634)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~~~~ 115 (634)
...+.++..|++|||++|||||+|+++.+..+...+
T Consensus 81 ~~~e~~~~~d~~fLme~ME~rE~lee~~~~~d~~~L 116 (173)
T PRK01773 81 QNLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDAL 116 (173)
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 666667888999999999999999998765543333
No 30
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=2.3e-27 Score=237.08 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=174.7
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEE
Q psy8852 239 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAV 318 (634)
Q Consensus 239 ~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV 318 (634)
.+.+...|+++++.++..++.++..++++||++|+..++.++.++++.||++...++.||.|++.+|.... .++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~------~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN------GAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC------cEE
Confidence 56778899999999999888889999999999999999999999999999999999999999999875431 589
Q ss_pred EEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEE
Q psy8852 319 YDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 398 (634)
Q Consensus 319 ~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 398 (634)
+|+||||||+++++- +.+ .. .++.++||++||+.|++++. .. +.+||++|+.++
T Consensus 140 vDIGggtt~i~v~~~--g~~--~~-~~~~~~GG~~it~~Ia~~l~----i~----------~~eAE~lK~~~~------- 193 (267)
T PRK15080 140 VDIGGGTTGISILKD--GKV--VY-SADEPTGGTHMSLVLAGAYG----IS----------FEEAEQYKRDPK------- 193 (267)
T ss_pred EEeCCCcEEEEEEEC--CeE--EE-EecccCchHHHHHHHHHHhC----CC----------HHHHHHHHhccC-------
Confidence 999999999999753 332 22 34689999999999987642 11 367889887753
Q ss_pred EEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCC
Q psy8852 399 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 478 (634)
Q Consensus 399 ~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~ 478 (634)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.||.++..+.+
T Consensus 194 --------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~ 254 (267)
T PRK15080 194 --------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQH 254 (267)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCC
Confidence 357899999999999999999999864 5789999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHH
Q psy8852 479 PDKAVVFGAAIQA 491 (634)
Q Consensus 479 p~~ava~GAa~~a 491 (634)
|+.++|.|||+++
T Consensus 255 P~~~~a~Gaa~~~ 267 (267)
T PRK15080 255 PLFVTPLGIALSC 267 (267)
T ss_pred chHHHHHHHHhhC
Confidence 9999999999874
No 31
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.96 E-value=3.3e-29 Score=230.35 Aligned_cols=110 Identities=34% Similarity=0.643 Sum_probs=103.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++++.||+||+||+||.+|+.|+|.|+|+++.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~ 85 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQ 85 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCCc
Confidence 59999999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.+.++..|++|||++|||||+|+++.+..+
T Consensus 86 ~e~~~~~d~~fLme~mE~rE~lee~~~~~d 115 (176)
T PRK03578 86 AENNTAMPPAFLMQQMEWREAIEDARAARD 115 (176)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 777788899999999999999999875443
No 32
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.95 E-value=2.3e-28 Score=223.47 Aligned_cols=112 Identities=31% Similarity=0.517 Sum_probs=103.4
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+|+.|+|.|.|+.+.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~ 83 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVP 83 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCC
Confidence 69999999999999999999999999999999999999998899999999999999999999999999999999999887
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcchhhh
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVK 114 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~~~ 114 (634)
.+ .+..|++|||++|||||+|+++.+..+...
T Consensus 84 ~~-~~~~d~~fLme~me~rE~le~~~~~~d~~~ 115 (173)
T PRK00294 84 LE-VTVHDPEFLLQQMQLREELEELQDEADLAG 115 (173)
T ss_pred cc-cCCCCHHHHHHHHHHHHHHHhhcccccHHH
Confidence 64 466799999999999999999987655333
No 33
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.95 E-value=3.6e-28 Score=223.31 Aligned_cols=110 Identities=36% Similarity=0.617 Sum_probs=102.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||++|++|..+|+++||++|+++|||++++.++.++..+.++|+.||+||++|+||.+|+.|+|.|.|.++.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~ 80 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA 80 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence 59999999999999999999999999999999999998888888889999999999999999999999999999999988
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.+..+..|++|||++|||+|+|+++.+..+
T Consensus 81 ~~~~~~~d~efLme~me~rE~le~~~~~~d 110 (171)
T PRK05014 81 HEQHTVRDTAFLMEQMELREELEDIEQSKD 110 (171)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHhhccccC
Confidence 776777899999999999999999876554
No 34
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.95 E-value=6.1e-28 Score=220.07 Aligned_cols=107 Identities=32% Similarity=0.465 Sum_probs=96.8
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCC
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDL 80 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~ 80 (634)
|+|||++||||++|++|..+|+++||+||+++|||++++ ..++..+.++|+.||+||+||+||.+|+.|+|.|+|+.+
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~--~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~ 78 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT--LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINL 78 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCC
Confidence 889999999999999999999999999999999999864 456666778999999999999999999999999999998
Q ss_pred cccc-ccCCCHHHHHHHHHHHHHHHHHhhc
Q psy8852 81 NTKL-NLNFSHDFLEQQMKWRETLSIIKNK 109 (634)
Q Consensus 81 ~~~~-~~~~~~~~l~~~~e~~e~~~~~~~~ 109 (634)
..+. ++.+|++|||++|||+|+++++.+.
T Consensus 79 ~~~~~~~~~d~~fLme~me~rE~le~~~~~ 108 (166)
T PRK01356 79 NDEKTRSLLSPLELSIFWDEMERIENTILF 108 (166)
T ss_pred CCccccccCCHHHHHHHHHHHHHHHcCCCH
Confidence 7763 4678999999999999999988543
No 35
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.92 E-value=3.8e-23 Score=218.12 Aligned_cols=195 Identities=17% Similarity=0.242 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||||+++++. +.... .....+||++
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~ 230 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-KELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNH 230 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-hcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHH
Confidence 4566788899999999999999999999999865433 5667999999999999999863 33211 3347899999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC------cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHH
Q psy8852 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 427 (634)
Q Consensus 354 id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~ 427 (634)
||+.+.+.+ ...+.+||++|+.++.. ....+.++.. +.+....++|++|++++++.+++
T Consensus 231 it~~i~~~l--------------~~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~is~~~l~~ii~~~~~e 295 (371)
T TIGR01174 231 ITKDIAKAL--------------RTPLEEAERIKIKYGCASIPLEGPDENIEIPSV-GERPPRSLSRKELAEIIEARAEE 295 (371)
T ss_pred HHHHHHHHh--------------CCCHHHHHHHHHHeeEecccCCCCCCEEEeccC-CCCCCeEEcHHHHHHHHHHHHHH
Confidence 999987532 22357899999999864 2345555432 34667899999999999999999
Q ss_pred HHHHHH-HHHHHcCCCcCCCCe-EEEEcCCcCcHHHHHHHHhhccCCcCC------------CCChhhHHHHHHHHH
Q psy8852 428 TILLSS-KALMDANLTIKDINN-VILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAIQ 490 (634)
Q Consensus 428 ~~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~~~------------~~~p~~ava~GAa~~ 490 (634)
+...++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|.++|
T Consensus 296 i~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 296 ILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999997 999998876 56776 999999999999999999999875421 137889999998864
No 36
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.91 E-value=4.5e-24 Score=193.34 Aligned_cols=100 Identities=38% Similarity=0.601 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCccccccCCCHHHH
Q psy8852 14 FNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFL 93 (634)
Q Consensus 14 ~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~~~~~~~~~~~~l 93 (634)
|++|..+|+++||+||+++|||+|++.++.++..+.++|+.||+||+||+||.+|+.|+|.|+|+.+..+.++..|++||
T Consensus 1 f~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~~~d~~fL 80 (157)
T TIGR00714 1 YQLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHSVRDTAFL 80 (157)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCCCCCHHHH
Confidence 67899999999999999999999999888888889999999999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHHhhcchhh
Q psy8852 94 EQQMKWRETLSIIKNKKDKV 113 (634)
Q Consensus 94 ~~~~e~~e~~~~~~~~~~~~ 113 (634)
|++|+|+|.++++.+..+..
T Consensus 81 me~Me~rE~lee~~~~~d~~ 100 (157)
T TIGR00714 81 MEQLELREELDEIEQAKDEA 100 (157)
T ss_pred HHHHHHHHHHHHHHhCCCHH
Confidence 99999999999987665433
No 37
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.90 E-value=5.8e-22 Score=211.41 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=149.9
Q ss_pred HHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHH
Q psy8852 277 RQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDY 356 (634)
Q Consensus 277 r~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 356 (634)
.+.+.+|++.||+++..++.||.|+|.++..... .+..++|+|+||||||+++++ ++.+ ......++||+++++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-~~~gv~vvDiGggtTdisv~~--~G~l---~~~~~i~~GG~~it~ 241 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-RELGVCVVDIGGGTMDIAVYT--GGAL---RHTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-hhcCeEEEEeCCCceEEEEEE--CCEE---EEEeeeechHHHHHH
Confidence 3444679999999999999999999999865543 567799999999999999996 3332 123447899999999
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC------cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHH
Q psy8852 357 CLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 430 (634)
Q Consensus 357 ~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~ 430 (634)
.|...+. . .+..||++|+.+... ....+.++..++. ....+++.+|.+++.+.++++.+
T Consensus 242 dIa~~l~----i----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~-~~~~i~~~~l~~ii~~r~~ei~~ 306 (420)
T PRK09472 242 DIAYAFG----T----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR-PPRSLQRQTLAEVIEPRYTELLN 306 (420)
T ss_pred HHHHHhC----c----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC-CCeEEcHHHHHHHHHHHHHHHHH
Confidence 9875442 1 247899999775432 2345555533332 23588999999999997777777
Q ss_pred HHHH-------HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC------------CCChhhHHHHHHHHHH
Q psy8852 431 LSSK-------ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAIQA 491 (634)
Q Consensus 431 ~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~------------~~~p~~ava~GAa~~a 491 (634)
.+++ .+...++....++.|+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|+++|+
T Consensus 307 ~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~ 386 (420)
T PRK09472 307 LVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYG 386 (420)
T ss_pred HHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHh
Confidence 7765 44666777677899999999999999999999999865432 2489999999999997
Q ss_pred h
Q psy8852 492 N 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 387 ~ 387 (420)
T PRK09472 387 K 387 (420)
T ss_pred h
Confidence 6
No 38
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.81 E-value=8.9e-18 Score=174.22 Aligned_cols=320 Identities=18% Similarity=0.194 Sum_probs=217.3
Q ss_pred eEEEEEeCCceEEEEEEE--CC-eeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 134 VSIGIDFGTTNSLVAIVR--NN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~--~g-~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
+++|+|+||+.+++.+.. ++ ...++.- ...||-- . ++| ...--++..+.. ...+....++.|....+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~----g~~~SrG-i-k~G-~I~di~~~~~sI---~~av~~AE~mag~~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV----GSHPSRG-I-KKG-VIVDLDAAAQSI---KKAVEAAERMAGCEIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEee----ecccCcc-c-ccc-eEEcHHHHHHHH---HHHHHHHHHhcCCCcce
Confidence 799999999999977765 44 5666641 1222221 1 123 344333333222 23455566666776554
Q ss_pred cccCCCCe-EEecCCCceEEEecC-cccCHHhHHHHHHHHHHHHHHHHhCCCcCc-------------------------
Q psy8852 211 INTNSFPY-DFQNKFGMLHIKTIS-GIKSPIEISAQIFITLKKIAENAVNNRIFG------------------------- 263 (634)
Q Consensus 211 ~~~~~~~~-~i~~~~~~~~~~~~~-~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~------------------------- 263 (634)
+-.. ++- .+...+..-.+.+.+ +.++.+++-..+ +.|......+-..
T Consensus 77 v~vs-~sG~~i~s~~~~g~v~i~~~~eIt~~DI~rvl-----~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm~G 150 (418)
T COG0849 77 VIVS-LSGNHIKSQNVNGEVSISEEKEITQEDIERVL-----EAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGMSG 150 (418)
T ss_pred EEEE-eccceeEEEeeEEEEEcCCCCccCHHHHHHHH-----HHHHhhccCCCceEEEEeeeEEEECCccccCCcccccc
Confidence 2111 000 000111112222334 677777776333 3333222111122
Q ss_pred -------EEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCC
Q psy8852 264 -------AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNG 336 (634)
Q Consensus 264 -------~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 336 (634)
.++|+| ..--+.+.+|.+.+|+++..++.+|.|+|.+...+.. ++-.++++|+||||||+++++-+.
T Consensus 151 ~rL~v~vhvit~~----~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE-kelGv~lIDiG~GTTdIai~~~G~- 224 (418)
T COG0849 151 VRLEVEVHVITGP----KNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE-KELGVALIDIGGGTTDIAIYKNGA- 224 (418)
T ss_pred ceEEEEEEEEEcc----hHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc-HhcCeEEEEeCCCcEEEEEEECCE-
Confidence 445555 3445778999999999999999999999997766555 778899999999999999987553
Q ss_pred eEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc------eEEEEEecCCceeEE
Q psy8852 337 VFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSS------VKLNVKLSDKKIVNI 410 (634)
Q Consensus 337 ~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~g~~~~~ 410 (634)
+.+.+..++||++++..|..-|.-. +..||+.|..+..... ..+.++.. |.+...
T Consensus 225 ----l~~~~~ipvgG~~vT~DIa~~l~t~--------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~v-g~~~~~ 285 (418)
T COG0849 225 ----LRYTGVIPVGGDHVTKDIAKGLKTP--------------FEEAERIKIKYGSALISLADDEETIEVPSV-GSDIPR 285 (418)
T ss_pred ----EEEEeeEeeCccHHHHHHHHHhCCC--------------HHHHHHHHHHcCccccCcCCCcceEecccC-CCcccc
Confidence 2234558999999999998644433 3789999999855432 34555432 333478
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC------------CCC
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT------------SID 478 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~------------~~~ 478 (634)
.+|+.++.+++++.+.++..+++..|++.+....-...|+|+||++.+|++.+..++.|+.++.. ..+
T Consensus 286 ~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 286 QVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccC
Confidence 89999999999999999999999999999987666799999999999999999999999764321 246
Q ss_pred hhhHHHHHHHHHHhHh
Q psy8852 479 PDKAVVFGAAIQANFL 494 (634)
Q Consensus 479 p~~ava~GAa~~a~~~ 494 (634)
|..+.|.|..+++...
T Consensus 366 p~fs~avGl~~~~~~~ 381 (418)
T COG0849 366 PAFSTAVGLLLYGALM 381 (418)
T ss_pred chhhhhHHHHHHHhhc
Confidence 8999999999998753
No 39
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.80 E-value=2e-19 Score=161.17 Aligned_cols=197 Identities=24% Similarity=0.337 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCC
Q psy8852 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGG 323 (634)
Q Consensus 244 ~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Gg 323 (634)
.+.+.+++.+++++|..++...-++|..-.....+...+..+.||++++.+++||+|||.-..++.. .|+|+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 4678899999999999999999999999877778888899999999999999999999987766655 6999999
Q ss_pred CeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec
Q psy8852 324 GTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLS 403 (634)
Q Consensus 324 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~ 403 (634)
|||-+|+++-++-.| ..|.+-||.++...|+- .+..-+++||+.|..-..
T Consensus 150 GTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG--------------~ygi~~EeAE~~Kr~~k~----------- 199 (277)
T COG4820 150 GTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAG--------------NYGISLEEAEQYKRGHKK----------- 199 (277)
T ss_pred CcceeEEEEcCcEEE-----eccCCCCceeEEEEEec--------------ccCcCHhHHHHhhhcccc-----------
Confidence 999999998776443 55688999998877652 122224667776654211
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHH
Q psy8852 404 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483 (634)
Q Consensus 404 ~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~av 483 (634)
.+|.--.+.|+++++.+.+.+.++..+ +.-+.|+||+|.-|.+.+.+++.|+.++..+..|....
T Consensus 200 ----------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~T 264 (277)
T COG4820 200 ----------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMT 264 (277)
T ss_pred ----------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccccCCCcceec
Confidence 123334568999999999999998765 56899999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q psy8852 484 VFGAAIQA 491 (634)
Q Consensus 484 a~GAa~~a 491 (634)
-.|-|+.+
T Consensus 265 PLgIA~sg 272 (277)
T COG4820 265 PLGIASSG 272 (277)
T ss_pred hhhhhhcc
Confidence 88877654
No 40
>KOG3192|consensus
Probab=99.79 E-value=3.2e-19 Score=152.73 Aligned_cols=110 Identities=34% Similarity=0.533 Sum_probs=98.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
.+||.+||....+.+++..++-.|...++++|||+-......+...+.+.+..+|+||.||+||++||.|++.|+|++..
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~ 87 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQEQT 87 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCc
Confidence 47999999999999999999999999999999999877776677788899999999999999999999999999999887
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcchh
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKDK 112 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~ 112 (634)
+++.+. ||+|||++|+.+|.|.+.....+.
T Consensus 88 sne~st-Dpe~Lmevle~~E~IS~~~De~~l 117 (168)
T KOG3192|consen 88 SNELST-DPEFLMEVLEYHEAISEMDDEEDL 117 (168)
T ss_pred hhhhcc-CHHHHHHHHHHHHHHHhccCcHHH
Confidence 765444 999999999999999998766553
No 41
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.75 E-value=2.7e-17 Score=173.99 Aligned_cols=300 Identities=18% Similarity=0.189 Sum_probs=197.4
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC---------CcEEecHhHHhhhccCCCchhhhhhhhcCC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD---------GKIYVGKKAKITQNIDPKNTISSIKRFIAR 206 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~ 206 (634)
|.||+||.++++++..++.|..+ +||+++...+ ....+|.+|...... ...+
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~---------- 62 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLEL---------- 62 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-ceEE----------
Confidence 78999999999999876655443 6788776533 246778777432210 0000
Q ss_pred CCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HHH
Q psy8852 207 DLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AAK 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa~ 285 (634)
..|+ .++.+.-.+.+..+++++...... ....-..+++++|..++..+|+.+.+ +++
T Consensus 63 --------~~P~-------------~~G~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe 120 (371)
T cd00012 63 --------IYPI-------------EHGIVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFE 120 (371)
T ss_pred --------cccc-------------cCCEEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhc
Confidence 1121 123444556777788877754321 12234679999999999888888766 577
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
..|++.+.++++|.+|+++++. .+.+|+|+|+++|+++.+.- |.. +.......++||.++|+.|.+++..+
T Consensus 121 ~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (371)
T cd00012 121 TFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKELLRER 191 (371)
T ss_pred cCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHHHHHhc
Confidence 7899999999999999998864 46699999999999987653 322 22223347899999999999988765
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHhcCCcc---------------eEEEEEecCCceeEEEEeHHHHHHHHHHHH-----
Q psy8852 366 AFLKKLSYKDVNILMIKSREIKELLSYQSS---------------VKLNVKLSDKKIVNITIDMKQFFTITQHLV----- 425 (634)
Q Consensus 366 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~i~i~~~~g~~~~~~itr~~~e~~~~~~~----- 425 (634)
... . + ...-...++.+|+.+..... ......+.+|.. +.++.+.| .+.+.++
T Consensus 192 ~~~-~-~---~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~--i~~~~er~-~~~E~lF~p~~~ 263 (371)
T cd00012 192 GYE-L-N---SSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRT--IKVGNERF-RAPEILFNPSLI 263 (371)
T ss_pred CCC-c-c---chhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeE--EEEChHHh-hChHhcCChhhc
Confidence 421 0 0 01123446666766533211 112233344443 44454433 3333333
Q ss_pred ----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC----------CcCCCCChhhHHHHHHHH
Q psy8852 426 ----NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT----------TLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 426 ----~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~----------~~~~~~~p~~ava~GAa~ 489 (634)
..+.+.|.++++.+..+ ..-.+.|+|+||+|++|.+.++|.+.+.. .+....+|..++-.||++
T Consensus 264 ~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si 343 (371)
T cd00012 264 GSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSI 343 (371)
T ss_pred CCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchh
Confidence 36788888888876533 22357899999999999999999988752 123457889999999999
Q ss_pred HHhH
Q psy8852 490 QANF 493 (634)
Q Consensus 490 ~a~~ 493 (634)
+|..
T Consensus 344 ~as~ 347 (371)
T cd00012 344 LASL 347 (371)
T ss_pred hcCc
Confidence 9864
No 42
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.6e-18 Score=171.06 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=60.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
+|||++|||+++|+ .+|||+|||+||++||||+++. .+.|+++|++|||||++||||.+|+.|+. +|..
T Consensus 4 ~dyYeiLGV~k~As--~~EIKkAYRkLA~kyHPD~n~g-----~~~AeeKFKEI~eAYEVLsD~eKRa~YD~--fG~~ 72 (371)
T COG0484 4 RDYYEILGVSKDAS--EEEIKKAYRKLAKKYHPDRNPG-----DKEAEEKFKEINEAYEVLSDPEKRAAYDQ--FGHA 72 (371)
T ss_pred cchhhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHHHHhCCHHHHHHhhc--cCcc
Confidence 69999999999655 7799999999999999999775 23478999999999999999999999985 4543
No 43
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.72 E-value=6.3e-17 Score=171.42 Aligned_cols=303 Identities=18% Similarity=0.220 Sum_probs=193.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC--------cEEecHhHHhhhccCCCchhhhhhhhcCC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG--------KIYVGKKAKITQNIDPKNTISSIKRFIAR 206 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~--------~~~~G~~A~~~~~~~~~~~i~~~k~~lg~ 206 (634)
.|+||+||.++++++..+..|.++ +||+|+...++ ...+|.+|...... . . +
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~----~--~----~-- 62 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGG----L--E----L-- 62 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcCCC----c--e----e--
Confidence 589999999999999876666554 78888876443 24677776321100 0 0 0
Q ss_pred CCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH-H
Q psy8852 207 DLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA-K 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa-~ 285 (634)
..|+ .++.+.-.+.+..+++++...... ....-..+++|.|...+..+|+.+.+.+ +
T Consensus 63 --------~~P~-------------~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~e~lfE 120 (373)
T smart00268 63 --------KYPI-------------EHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKILEIMFE 120 (373)
T ss_pred --------cCCC-------------cCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHHHHhhc
Confidence 1121 234555677888888888764211 1123357999999999899999988876 5
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. +|.. +.......++||.++|+.|.+++...
T Consensus 121 ~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (373)
T smart00268 121 TFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKELLSER 191 (373)
T ss_pred cCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHHHHHhc
Confidence 679999999999999999886 34679999999999999776 3322 22222346899999999999888762
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHhcCC-----------------cceEEEEEecCCceeEEEEeHHHHH-HHHHHH---
Q psy8852 366 AFLKKLSYKDVNILMIKSREIKELLSYQ-----------------SSVKLNVKLSDKKIVNITIDMKQFF-TITQHL--- 424 (634)
Q Consensus 366 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------------~~~~i~i~~~~g~~~~~~itr~~~e-~~~~~~--- 424 (634)
-. .. +. ..-...++.+|+.+... ........+.+|..+.+...|-..- .++.|.
T Consensus 192 ~~-~~-~~---~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~ 266 (373)
T smart00268 192 GY-QF-NS---SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIG 266 (373)
T ss_pred CC-CC-Cc---HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchhcC
Confidence 10 00 10 11123455555554221 1112233445666554432222221 222221
Q ss_pred --HHHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 425 --VNRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 425 --~~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
...+.++|.++|+.+..+. .-.+.|+|+||+|.+|.+.++|.+.+.. .+....++..++=.||+++|.
T Consensus 267 ~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 267 LEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred CCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 2367788888888765331 1136799999999999999999887721 233345667777788888775
Q ss_pred H
Q psy8852 493 F 493 (634)
Q Consensus 493 ~ 493 (634)
.
T Consensus 347 ~ 347 (373)
T smart00268 347 L 347 (373)
T ss_pred c
Confidence 3
No 44
>KOG0713|consensus
Probab=99.69 E-value=2.3e-17 Score=161.12 Aligned_cols=67 Identities=24% Similarity=0.401 Sum_probs=60.3
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||+|||||++++ .++||+|||+||++|||||+++++. |.+.|+.||.||++||||.+|+.|+-.
T Consensus 15 ~rDfYelLgV~k~As--d~eIKkAYRKLALk~HPDkNpddp~-----A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 15 GRDFYELLGVPKNAS--DQEIKKAYRKLALKYHPDKNPDDPN-----ANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred CCCHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 479999999999655 6799999999999999999887654 678999999999999999999999863
No 45
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.62 E-value=2e-13 Score=141.65 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=140.6
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------C------CceeeeecchhHHHHHhhhccC-------ccceEEEEEEeCC
Q psy8852 264 AVITVPAYFNDIQ-RQFTKNAAKLA------G------LNVLRLLNEPTSAAIAYKLDKN-------IFEGIFAVYDLGG 323 (634)
Q Consensus 264 ~viTVPa~~~~~q-r~~l~~aa~~a------G------l~~~~li~Ep~AAa~~y~~~~~-------~~~~~vlV~D~Gg 323 (634)
++...|..+-..+ ++.+++..... | +..+.+++||.+|.+.+..+.. .....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4458998885444 36677665331 1 2357889999999987766432 1445789999999
Q ss_pred CeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec
Q psy8852 324 GTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLS 403 (634)
Q Consensus 324 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~ 403 (634)
||||+++++ ++.+ +...++....|..++.+.+.+.+..+......+.... +++ |... .+.+ .
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~~~~~~~~~i-------e~~---l~~g---~i~~--~ 256 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKEEGASITPYML-------EKG---LEYG---ACKL--N 256 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhCCCCCCCHHHH-------HHH---HHcC---cEEe--C
Confidence 999999885 3333 2334455788999999999998865543222232221 111 2111 1111 1
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHH
Q psy8852 404 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483 (634)
Q Consensus 404 ~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~av 483 (634)
.+..+ .+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++.|++.|+.- ....||..|.
T Consensus 257 ~~~~i--d~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~AN 326 (344)
T PRK13917 257 QKTVI--DF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFAN 326 (344)
T ss_pred CCceE--eh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHH
Confidence 11122 22 4667789999999999888888864 2478999999999986 899999999864 4568999999
Q ss_pred HHHHHHHHhHhcC
Q psy8852 484 VFGAAIQANFLSG 496 (634)
Q Consensus 484 a~GAa~~a~~~~~ 496 (634)
|+|...+|..+.+
T Consensus 327 a~G~~~~g~~~~~ 339 (344)
T PRK13917 327 VRGYYKYGELLKN 339 (344)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999986654
No 46
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.61 E-value=6.9e-16 Score=118.92 Aligned_cols=64 Identities=28% Similarity=0.422 Sum_probs=57.7
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
|||++|||+++ .+.++|+++|+++++++|||++++.+ ..+.+.+..|++||++|+||.+|+.|+
T Consensus 1 ~~y~iLgl~~~--~~~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPD--ASDEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTT--SSHHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCC--CCHHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999995 55789999999999999999987655 457789999999999999999999996
No 47
>KOG0718|consensus
Probab=99.59 E-value=1.9e-15 Score=151.92 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=61.4
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
|||.+||||++++ .+||++|||++++.|||||+. +++.++.|+++|++|.+||++|+||.+|+.|++
T Consensus 10 e~Ya~LNlpkdAt--~eeI~~AYrr~~~lfHPDkh~--dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 10 ELYALLNLPKDAT--DEEIKKAYRRLSRLFHPDKHT--DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred hHHHHhCCCcccC--HHHHHHHHHHHHHhcCCcccC--ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 8999999999766 559999999999999999975 456788899999999999999999999999986
No 48
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.57 E-value=2e-13 Score=146.10 Aligned_cols=287 Identities=16% Similarity=0.167 Sum_probs=179.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC------------cEEecHhHHhhhccCCCchhhhhhh
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG------------KIYVGKKAKITQNIDPKNTISSIKR 202 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~------------~~~~G~~A~~~~~~~~~~~i~~~k~ 202 (634)
.|.||+||.++++++..+..|.++ +||+|+..+++ ++.+|.+|..... . ..
T Consensus 6 ~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~--~----~~--- 68 (414)
T PTZ00280 6 VVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASK--S----YT--- 68 (414)
T ss_pred eEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCcC--C----cE---
Confidence 589999999999999876666654 68888764331 2455655532100 0 00
Q ss_pred hcCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q psy8852 203 FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 203 ~lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 282 (634)
+ ..| ..++.+.-.+.+..++.++...... ....-..+++|.|..++..+|+.+.+
T Consensus 69 -l----------~~P-------------i~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~Re~l~e 123 (414)
T PTZ00280 69 -L----------TYP-------------MKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPENREYTAE 123 (414)
T ss_pred -E----------ecC-------------ccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHHHHHHHH
Confidence 0 112 1234556677888888876543211 12223468999999999999999877
Q ss_pred HH-HHcCCceeeeecchhHHHHHhhhccCc----cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHH
Q psy8852 283 AA-KLAGLNVLRLLNEPTSAAIAYKLDKNI----FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 357 (634)
Q Consensus 283 aa-~~aGl~~~~li~Ep~AAa~~y~~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 357 (634)
.+ +..+++.+.+..+|.+|++++...... ...+-+|+|+|.++|+++-+.- |.. +.......++||.++++.
T Consensus 124 ~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~GG~~lt~~ 200 (414)
T PTZ00280 124 IMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLAGRDITNF 200 (414)
T ss_pred HHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--CEE-cccceEEecCcHHHHHHH
Confidence 65 555999999999999999986332111 1234599999999999986542 322 111122368999999999
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc---------------eEEEEEec---CCceeEEEEeHHHHH-
Q psy8852 358 LFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSS---------------VKLNVKLS---DKKIVNITIDMKQFF- 418 (634)
Q Consensus 358 l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~i~i~~~---~g~~~~~~itr~~~e- 418 (634)
|.+++.++... . ... .....++.+|+.++.... ....+.+. +|....+.|..+.|.
T Consensus 201 L~~lL~~~~~~-~-~~~---~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~ 275 (414)
T PTZ00280 201 IQQMLRERGEP-I-PAE---DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLG 275 (414)
T ss_pred HHHHHHHcCCC-C-CcH---HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcC
Confidence 99988664221 1 111 112346667776543210 01112222 244456777776664
Q ss_pred --HHHHHHH------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC
Q psy8852 419 --TITQHLV------NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT 471 (634)
Q Consensus 419 --~~~~~~~------~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~ 471 (634)
-++.|-+ ..+.++|.++|.++..+ ..-.+.|+|+||+|.+|.+.++|.+.+..
T Consensus 276 ~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 276 PEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred cccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 2344422 14667788888877543 22247899999999999999999888743
No 49
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=5.1e-15 Score=154.30 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+||++||||+++.++ .++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~dyY~vLgv~~~As--~~eIkkayrkla~k~HPD~~~~~~-----~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 3 LSYYEILEVEKHSN--QETIKKSYRKLALKYHPDRNAGDK-----EAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CChHHHcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCcc-----HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 69999999999655 779999999999999999975422 267899999999999999999999986
No 50
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.53 E-value=1.3e-13 Score=147.42 Aligned_cols=306 Identities=19% Similarity=0.248 Sum_probs=188.1
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC----cEEecHhHHhhhccCCCchhhhhhhhcCCCCC
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG----KIYVGKKAKITQNIDPKNTISSIKRFIARDLK 209 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~ 209 (634)
-.|-||+|+.++++++..+..|..+ +||+++...+. ...+|..+.... .. ..+ .
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~~--~~-~~~---~-------- 62 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSPR--SN-LEL---R-------- 62 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHTG--TG-EEE---E--------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccch--hh-eee---e--------
Confidence 4689999999999999766666544 78888775543 367888753310 00 000 0
Q ss_pred CcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-HHHcC
Q psy8852 210 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA-AKLAG 288 (634)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a-a~~aG 288 (634)
.| ..++.+.-.+.+..+++++...... ....-..++++.|..++...|+.+.+. .+..|
T Consensus 63 ------~p-------------~~~g~i~~~~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~ 122 (393)
T PF00022_consen 63 ------SP-------------IENGVIVDWDALEEIWDYIFSNLLK-VDPSDHPVLLTEPPFNPRSQREKLAEILFEKFG 122 (393)
T ss_dssp ------ES-------------EETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS-
T ss_pred ------ee-------------ccccccccccccccccccccccccc-cccccceeeeeccccCCchhhhhhhhhhhcccc
Confidence 11 1234455566777777777664311 123445799999999999999887765 55779
Q ss_pred CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH-Hh
Q psy8852 289 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN-AF 367 (634)
Q Consensus 289 l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~-~~ 367 (634)
++.+.++++|.+|+++++.... +|+|+|.+.|.++-+ -+|.. +.......++||.++++.|.+.+.++ +.
T Consensus 123 ~~~v~~~~~~~~a~~~~g~~tg------lVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~ 193 (393)
T PF00022_consen 123 VPSVYFIPSPLLALYASGRTTG------LVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQ 193 (393)
T ss_dssp -SEEEEEEHHHHHHHHTTBSSE------EEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS
T ss_pred cceeeeeecccccccccccccc------cccccceeeeeeeee--eeccc-cccccccccccHHHHHHHHHHHHHhhccc
Confidence 9999999999999999876644 999999999988765 33322 11112236899999999999988884 11
Q ss_pred hcc--------C---CHHHHHHHHHHHHHHHHHhc---CC----------cceEEEEEecCCceeEEEEeHHHHHHHHHH
Q psy8852 368 LKK--------L---SYKDVNILMIKSREIKELLS---YQ----------SSVKLNVKLSDKKIVNITIDMKQFFTITQH 423 (634)
Q Consensus 368 ~~~--------~---~~~~~~~L~~~~e~~K~~Ls---~~----------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~ 423 (634)
... . .......-...++.+|+.+. .. ........+.+|. .+.+..+.| .+.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~--~i~~~~er~-~~~E~ 270 (393)
T PF00022_consen 194 INPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQ--TIILGKERF-RIPEI 270 (393)
T ss_dssp --GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSS--EEEESTHHH-HHHHT
T ss_pred cccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccccccc--ccccccccc-ccccc
Confidence 100 0 01111112233344444431 11 1122334455666 444554444 33343
Q ss_pred HHH----------------HHHHHHHHHHHHcCCCcCC--CCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCC
Q psy8852 424 LVN----------------RTILLSSKALMDANLTIKD--INNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSI 477 (634)
Q Consensus 424 ~~~----------------~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~ 477 (634)
+++ .+.++|.+++..+..+... .+.|+|+||+|.+|.+.++|.+.+.. ++..+.
T Consensus 271 LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~ 350 (393)
T PF00022_consen 271 LFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPP 350 (393)
T ss_dssp TTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T
T ss_pred ccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCc
Confidence 332 5778888888887644221 37899999999999999999877632 233445
Q ss_pred -ChhhHHHHHHHHHHhH
Q psy8852 478 -DPDKAVVFGAAIQANF 493 (634)
Q Consensus 478 -~p~~ava~GAa~~a~~ 493 (634)
+|..++=.||+++|..
T Consensus 351 ~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 351 SDRQFAAWIGGSILASL 367 (393)
T ss_dssp -TTTSHHHHHHHHHHTS
T ss_pred hhhhhcccccceeeecc
Confidence 8999999999999864
No 51
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1e-14 Score=152.11 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~------~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 4 KDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKS------PDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 5999999999965 47799999999999999999642 1267899999999999999999999986
No 52
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.52 E-value=8.8e-13 Score=136.08 Aligned_cols=204 Identities=18% Similarity=0.150 Sum_probs=135.4
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeeecchhHHHHHhhhccC---ccceEEEEEEeCCCeEE
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNAAKLA---------GLNVLRLLNEPTSAAIAYKLDKN---IFEGIFAVYDLGGGTFD 327 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~aa~~a---------Gl~~~~li~Ep~AAa~~y~~~~~---~~~~~vlV~D~GggT~d 327 (634)
.+..+|+..|..+...+++.+++..... -++.+.+++||.+|.+.+..+.. .....++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999888999999886532 33568899999999988765432 15567899999999999
Q ss_pred EEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCc
Q psy8852 328 ISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKK 406 (634)
Q Consensus 328 vsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~ 406 (634)
+.+++ +..+ +...++....|..++-+.+.+.+.++++.. ..+...+ ++ .|..... +.+ .|.
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~~~~~~~~i-------~~---~l~~g~~--~~~---~gk 242 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTPAYRDIDRI-------DL---ALRTGKQ--PRI---YQK 242 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCCCccCHHHH-------HH---HHHhCCc--eee---cce
Confidence 98763 4443 444555678899999999999998888755 2121111 11 1111110 000 122
Q ss_pred eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC-cCCCCChhhHHHH
Q psy8852 407 IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTSIDPDKAVVF 485 (634)
Q Consensus 407 ~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~~~~~~p~~ava~ 485 (634)
.+ .|+ +..+..+..++++...+.+.+.. ..+++.|+|+||++. .+++.|++.|+.. +....||..|.|+
T Consensus 243 ~~--di~--~~~~~~~~~~~~~v~~i~~~~~~----~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANar 312 (320)
T TIGR03739 243 PV--DIK--RCLELAETVAQQAVSTMMTWIGA----PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVR 312 (320)
T ss_pred ec--Cch--HHHHHHHHHHHHHHHHHHHhccc----CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHH
Confidence 22 222 22223344444444444443321 245889999999998 7789999999874 3456899999999
Q ss_pred HHHHHH
Q psy8852 486 GAAIQA 491 (634)
Q Consensus 486 GAa~~a 491 (634)
|-..++
T Consensus 313 G~~~~g 318 (320)
T TIGR03739 313 GFQIAG 318 (320)
T ss_pred HHHHhh
Confidence 988775
No 53
>PTZ00281 actin; Provisional
Probab=99.52 E-value=2.5e-13 Score=143.35 Aligned_cols=300 Identities=17% Similarity=0.201 Sum_probs=187.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|-||+|+.++++++..+..|..+ +||+|+..+++ ..++|.++.... . ... +
T Consensus 8 ~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~---~~~----l- 68 (376)
T PTZ00281 8 ALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---G---ILT----L- 68 (376)
T ss_pred eEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---c---CcE----E-
Confidence 588999999999999877776544 67777664322 234455442210 0 000 0
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AA 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa 284 (634)
..| ..++.+.-.+.+..++.++..... .....-..+++|-|..+...+|+.|.+ ..
T Consensus 69 ---------~~P-------------i~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lF 125 (376)
T PTZ00281 69 ---------KYP-------------IEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMF 125 (376)
T ss_pred ---------ecc-------------CcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHh
Confidence 011 123455666777778877764211 112233578999999999999999877 56
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+..+++.+.+...|.+++++++.. +-+|+|+|.+.|.++-+.-+. . +.......++||.++++.|.+.+..
T Consensus 126 E~~~vp~~~~~~~~~ls~ya~g~~------tglVVDiG~~~t~v~PV~dG~--~-~~~~~~~~~~GG~~lt~~L~~lL~~ 196 (376)
T PTZ00281 126 ETFNTPAMYVAIQAVLSLYASGRT------TGIVMDSGDGVSHTVPIYEGY--A-LPHAILRLDLAGRDLTDYMMKILTE 196 (376)
T ss_pred cccCCceeEeeccHHHHHHhcCCc------eEEEEECCCceEEEEEEEecc--c-chhheeeccCcHHHHHHHHHHHHHh
Confidence 677999999999999999887543 459999999999987443221 1 1222223689999999999987765
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEeHHHH---HHHHHHHH--
Q psy8852 365 NAFLKKLSYKDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITIDMKQF---FTITQHLV-- 425 (634)
Q Consensus 365 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~itr~~~---e~~~~~~~-- 425 (634)
+- ........ ...++.+|+.++... .......+.+|..+. +..+.| |-++.|.+
T Consensus 197 ~~-~~~~~~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~--i~~er~~~~E~LF~P~~~~ 269 (376)
T PTZ00281 197 RG-YSFTTTAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVIT--IGNERFRCPEALFQPSFLG 269 (376)
T ss_pred cC-CCCCcHHH----HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEE--eeHHHeeCcccccChhhcC
Confidence 32 11111111 234566677654221 112234456665544 444433 23344422
Q ss_pred ---HHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 426 ---NRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 426 ---~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
..+.++|.+++..+..+. .-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||+++|.
T Consensus 270 ~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 270 MESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred CCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 146677777777765431 1237899999999999999999877631 233445667788888888875
No 54
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.1e-14 Score=150.07 Aligned_cols=66 Identities=21% Similarity=0.467 Sum_probs=58.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||+++.. +..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 4 KDYYEILGVSRNAT--QEEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred CChHHhcCCCCCCC--HHHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 59999999999654 77999999999999999997532 23377899999999999999999999986
No 55
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.3e-14 Score=149.61 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++... ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 4 RSYYDILGVSKSAN--DEEIKSAYRKLAIKYHPDKNKGN-----KESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 59999999999765 66999999999999999997532 2367899999999999999999999986
No 56
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.50 E-value=4.4e-14 Score=107.38 Aligned_cols=60 Identities=25% Similarity=0.506 Sum_probs=52.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFL 67 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~ 67 (634)
+|||++|||+++ ++.++|+++|+++++++|||++.+. ...+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~--~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCCCC
Confidence 589999999996 6678999999999999999998754 45577899999999999999853
No 57
>PTZ00004 actin-2; Provisional
Probab=99.49 E-value=4.8e-13 Score=141.35 Aligned_cols=298 Identities=16% Similarity=0.200 Sum_probs=186.7
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|.||+|+.++++++..+..|.++ +||+++..++. ..++|.++.... . . ..+
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~---~--~-~~l----- 68 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR---G--I-LTL----- 68 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc---c--c-ceE-----
Confidence 589999999999999877666544 68887764331 244555542210 0 0 000
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhC--CCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVN--NRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~--~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
..| ..++.+.-.+.+..++.++... .++ ..-..+++|-|..++..+|+.+.+.
T Consensus 69 ---------~~P-------------i~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~~~~~r~~~~e~ 123 (378)
T PTZ00004 69 ---------KYP-------------IEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQI 123 (378)
T ss_pred ---------ccc-------------CcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCCcHHHHHHHHHH
Confidence 112 1234555567777788875432 222 2345688999999999999877664
Q ss_pred -HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 284 -AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 284 -a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
.+..|++.+.+..+|.+|+++++. .+-+|+|+|.+.|+++-+. +|.. +.......++||.++++.|.+.+
T Consensus 124 lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG~~lt~~L~~lL 194 (378)
T PTZ00004 124 MFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAGRDLTEYMMKIL 194 (378)
T ss_pred HHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEE--CCEE-eecceeeecccHHHHHHHHHHHH
Confidence 566799999999999999998754 3459999999999988553 2322 22222336899999999999987
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc---------------ceEEEEEecCCceeEEEEeHHHHH---HHHHHH
Q psy8852 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQS---------------SVKLNVKLSDKKIVNITIDMKQFF---TITQHL 424 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~~i~i~~~~g~~~~~~itr~~~e---~~~~~~ 424 (634)
..+... .++... ...++..|+.++... .......+.+|..+.+ ..+.|. -++.|-
T Consensus 195 ~~~~~~--~~~~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~~i~l--~~er~~~~E~LF~P~ 267 (378)
T PTZ00004 195 HERGTT--FTTTAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGTIITV--GSERFRCPEALFQPS 267 (378)
T ss_pred HhcCCC--CCcHHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCCEEEE--cHHHeeCcccccChh
Confidence 553210 111111 123455555542211 0123445567765544 444432 344443
Q ss_pred ------HHHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHH
Q psy8852 425 ------VNRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 425 ------~~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa 488 (634)
...+.++|.+++.++..+. .-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=.||+
T Consensus 268 ~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggs 347 (378)
T PTZ00004 268 LIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGS 347 (378)
T ss_pred hcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcc
Confidence 2346677888887765431 2237899999999999999999877631 23334566677777887
Q ss_pred HHHh
Q psy8852 489 IQAN 492 (634)
Q Consensus 489 ~~a~ 492 (634)
++|.
T Consensus 348 ilas 351 (378)
T PTZ00004 348 ILSS 351 (378)
T ss_pred cccC
Confidence 7764
No 58
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.6e-14 Score=150.05 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++... +.++++|++|++||++|+||.+|+.|+.
T Consensus 9 ~Dyy~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 9 KDFYKELGVSSDAS--AEEIKKAYRKLARELHPDANPGD-----PAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred cCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 59999999999655 67999999999999999997542 2367899999999999999999999986
No 59
>KOG0712|consensus
Probab=99.48 E-value=4.1e-14 Score=140.67 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=57.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+.||++|||+++|+ .+|||+|||+|+++|||||+++ +.++|++|++||++||||.+|+.|+.
T Consensus 4 ~~~y~il~v~~~As--~~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd~ekr~~yD~ 65 (337)
T KOG0712|consen 4 TKLYDILGVSPDAS--EEEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSDPEKREIYDQ 65 (337)
T ss_pred cccceeeccCCCcC--HHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 68999999999655 7799999999999999999876 56899999999999999999999986
No 60
>PTZ00452 actin; Provisional
Probab=99.48 E-value=2.5e-12 Score=135.29 Aligned_cols=300 Identities=20% Similarity=0.182 Sum_probs=187.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|-||+|+.++++++..+..|.++ +||+|+..++. +.++|.+|..... ...+
T Consensus 7 ~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~------~~~l----- 67 (375)
T PTZ00452 7 AVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRG------VLAI----- 67 (375)
T ss_pred EEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhcccc------CcEE-----
Confidence 588999999999999887777655 67877764332 2345555422100 0000
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-H
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA-A 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a-a 284 (634)
..| +.++.+.-.+.+..++.|+...... ....-..+++|-|...+..+|+.|.+. .
T Consensus 68 ---------~~P-------------i~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~Re~l~eilF 124 (375)
T PTZ00452 68 ---------KEP-------------IQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNRERMTQIMF 124 (375)
T ss_pred ---------ccc-------------CcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHHHHHHHHHh
Confidence 011 2234556667777788877543211 223345799999999999999888775 5
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+..+++.+.+.+.|.+++++++.. +-+|+|+|.+.|.++-+. +|..- ........+||.++++.|.+.+.+
T Consensus 125 E~~~vp~~~~~~~~~lslya~g~~------tglVVDiG~~~t~v~PV~--dG~~l-~~~~~r~~~gG~~lt~~L~~lL~~ 195 (375)
T PTZ00452 125 ETFNTPCLYISNEAVLSLYTSGKT------IGLVVDSGEGVTHCVPVF--EGHQI-PQAITKINLAGRLCTDYLTQILQE 195 (375)
T ss_pred hccCCceEEEechHHHHHHHCCCc------eeeeecCCCCcceEEEEE--CCEEe-ccceEEeeccchHHHHHHHHHHHh
Confidence 567889999999999999987543 449999999999987543 33221 122223679999999999887754
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEeHHHHH---HHHHHHH--
Q psy8852 365 NAFLKKLSYKDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITIDMKQFF---TITQHLV-- 425 (634)
Q Consensus 365 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~itr~~~e---~~~~~~~-- 425 (634)
+ +........ ...++.+|+.++... ......++.+|..+. +..+.|. -+++|.+
T Consensus 196 ~-~~~~~~~~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~--l~~er~~~~E~LF~P~~~g 268 (375)
T PTZ00452 196 L-GYSLTEPHQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILT--IKSQKFRCSEILFQPKLIG 268 (375)
T ss_pred c-CCCCCCHHH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEE--eehHHhcCcccccChhhcC
Confidence 2 111111111 123455555543221 112234456666544 4555551 2333432
Q ss_pred ---HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 426 ---NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 426 ---~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
..+.+++.+++..+..+ ..-.+.|+|+||+|.+|.+.++|.+.+.. ++..+.++..++=.|++++|.
T Consensus 269 ~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 269 LEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 23567777777776533 22247999999999999999999877621 233345566667778888775
No 61
>PTZ00466 actin-like protein; Provisional
Probab=99.47 E-value=1.9e-12 Score=136.29 Aligned_cols=299 Identities=17% Similarity=0.179 Sum_probs=187.6
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|-||+|+.++++++..+..|.++ +||+|+..+.. ..++|.++..... . +.
T Consensus 14 ~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~-----~-------~~ 73 (380)
T PTZ00466 14 PIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRG-----L-------LK 73 (380)
T ss_pred eEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhCc-----C-------ce
Confidence 488999999999999877676654 67777664321 2345555422100 0 00
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AA 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa 284 (634)
. ..| +.++.+.-.+.+..+++++.+... ....-..+++|-|..++..+|+.+.+ ..
T Consensus 74 l--------~~P-------------i~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lF 130 (380)
T PTZ00466 74 V--------TYP-------------INHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFF 130 (380)
T ss_pred e--------Ccc-------------ccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHh
Confidence 0 112 223466677788888888764321 12234568899999999999998766 45
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+..+++.+.+..+|.+|+++++.. +-+|+|+|.+.|.++-+. +|.. +.......++||.++++.|.+.+.+
T Consensus 131 E~~~~p~~~~~~~~~lsl~a~g~~------tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~ 201 (380)
T PTZ00466 131 ETFNVPALFISIQAILSLYSCGKT------NGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLGYLLRK 201 (380)
T ss_pred ccCCCCeEEEecchHHHHHhcCCc------eEEEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHHHHHHh
Confidence 667999999999999999987543 459999999999887543 3322 2222223689999999999987754
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHhcCC-------------cceEEEEEecCCceeEEEEeHHHH---HHHHHHHH---
Q psy8852 365 NAFLKKLSYKDVNILMIKSREIKELLSYQ-------------SSVKLNVKLSDKKIVNITIDMKQF---FTITQHLV--- 425 (634)
Q Consensus 365 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-------------~~~~i~i~~~~g~~~~~~itr~~~---e~~~~~~~--- 425 (634)
+ +.. .+.. .-+..++.+|+.++.. .......++.+|..+. +..+.| |-++.|-+
T Consensus 202 ~-~~~-~~~~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~--l~~er~~~~E~LF~P~~~g~ 274 (380)
T PTZ00466 202 N-GHL-FNTS---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQIL--IGSERYRAPEVLFNPSILGL 274 (380)
T ss_pred c-CCC-CCcH---HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEE--EchHHhcCcccccCccccCC
Confidence 2 111 1111 1123455566654321 1112344556666544 455444 22333321
Q ss_pred --HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 426 --NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 426 --~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
..+.++|.+.+.++..+ ..-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||+++|.
T Consensus 275 ~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 275 EYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred CCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 14567777777776543 22247899999999999999999877721 233345666667778888775
No 62
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=5.1e-14 Score=147.72 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=57.3
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++... ..++++|++||+||++|+||.+|+.|+.
T Consensus 9 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGD-----AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc-----hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4999999999965 467999999999999999997542 2367899999999999999999999996
No 63
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.3e-14 Score=145.98 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|+++||||++... ..++++|++|++||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 3 RDYYEILGLSKG--ASKDEIKKAYRKIAIKYHPDKNKGN-----KEAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred CCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 699999999996 4577999999999999999996542 2366799999999999999999999987
No 64
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.3e-14 Score=146.27 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=56.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HpD~~~~------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 4 RDYYEVLGVDRNAS--VDEVKKAYRKLARKYHPDVNKA------PDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 59999999999665 5699999999999999999642 2366799999999999999999999986
No 65
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.6e-14 Score=146.76 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++.+ ..++++|++|++||++|+||.+|+.|+.
T Consensus 4 ~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 4 RDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDN-----PEAEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred CChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCC-----hHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 6999999999965 467999999999999999997643 2366789999999999999999999986
No 66
>KOG0717|consensus
Probab=99.46 E-value=5.9e-14 Score=141.36 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=59.7
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
|+.||++|||.+.++ ..+||++||+|+++|||||++.. -+.+.+.|++|+.||++||||..|+=|+-..
T Consensus 7 ~~c~YE~L~v~~~a~--d~eik~~YRklALq~HPDknpd~----ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 7 KRCYYEVLGVERDAD--DDEIKKNYRKLALQYHPDKNPDR----IEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hhHHHHHhcccccCC--HHHHHHHHHHHHHhhCCCCCCcc----HHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 578999999999655 55999999999999999995433 3458899999999999999999999998543
No 67
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.7e-14 Score=145.99 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 6999999999965 47799999999999999999752 2367899999999999999999999986
No 68
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.45 E-value=1.6e-13 Score=102.31 Aligned_cols=55 Identities=25% Similarity=0.469 Sum_probs=48.8
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKD 64 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d 64 (634)
|||++|||+++ ++.++|+++|++|++++|||++.+. ..+.+.+..|++||++|+|
T Consensus 1 ~~y~vLgl~~~--~~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPD--ASDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcC
Confidence 79999999985 5678999999999999999997654 4577899999999999987
No 69
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=9.5e-14 Score=146.27 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||++++ +.++||+|||+|+++||||+++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 3 RDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDN-----KEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 6999999999964 577999999999999999997543 2366899999999999999999999996
No 70
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.45 E-value=7.2e-14 Score=147.01 Aligned_cols=61 Identities=28% Similarity=0.393 Sum_probs=54.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++|||||+.. .++|++||+||++|+||.+|+.|+.
T Consensus 28 ~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 28 EKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred hhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhccHHHHHHHhh
Confidence 5999999999965 47799999999999999999531 2689999999999999999999986
No 71
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=9.6e-14 Score=140.31 Aligned_cols=64 Identities=30% Similarity=0.503 Sum_probs=56.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 4 KDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKS------PGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 5999999999964 57799999999999999999752 2356789999999999999999999997
No 72
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=9.3e-14 Score=145.96 Aligned_cols=65 Identities=28% Similarity=0.437 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++ ++.++||+|||+|+++||||+++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 5 ~d~y~~Lgv~~~--a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 5 KDYYEILGVDRN--ATEEEIKKAYRRLAKKYHPDLNPGD-----KEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 599999999995 5577999999999999999997543 2367899999999999999999999986
No 73
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=9.8e-14 Score=144.89 Aligned_cols=65 Identities=25% Similarity=0.431 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|+++||||+++.. ..++++|++|++||++|+||.+|+.|+.
T Consensus 4 ~d~y~~lgv~~~--a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 4 RDYYEILGVTRD--ASEEEIKKSYRKLAMKYHPDRNPGD-----KEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred CChHHHhCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 599999999995 5577999999999999999997543 2356789999999999999999999986
No 74
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=7.5e-14 Score=146.52 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=57.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||+++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a~--~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 68 (380)
T PRK14297 4 KDYYEVLGLEKGAS--DDEIKKAFRKLAIKYHPDKNKGN-----KEAEEKFKEINEAYQVLSDPQKKAQYDQ 68 (380)
T ss_pred CChHHhhCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence 59999999999655 66999999999999999997542 2367899999999999999999999986
No 75
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=9.1e-14 Score=145.71 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=58.2
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
|.|||++|||++++ +.++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 1 ~~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 1 MMDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKE------KGAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------hhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 89999999999965 47799999999999999999752 2366789999999999999999999987
No 76
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1e-13 Score=145.36 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++.. .++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 4 TEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKEP------GAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 5999999999965 577999999999999999997532 256789999999999999999999996
No 77
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=145.30 Aligned_cols=64 Identities=25% Similarity=0.455 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.|+.
T Consensus 3 ~d~Y~~Lgv~~~a~--~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 3 KDYYEILGVSRNAT--QEEIKKAYRRLARKYHPDFNKN------PEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred CCHHHhhCCCCCCC--HHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 59999999999654 6799999999999999999754 2256789999999999999999999997
No 78
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.2e-13 Score=145.29 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=57.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|+++||||++++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 1 ~d~y~iLgv~~~--a~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 1 MDYYTILGVSKT--ASPEEIKKAYRKLAVKYHPDKNPGD-----AEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred CCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 599999999996 5577999999999999999997643 2367789999999999999999999986
No 79
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.1e-13 Score=144.65 Aligned_cols=64 Identities=23% Similarity=0.405 Sum_probs=56.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 5 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 5 RDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKE------PDAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred CCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCC------hhHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 4999999999965 57799999999999999999752 2256789999999999999999999986
No 80
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.2e-13 Score=144.08 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=58.3
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++|++|||+|+++||||+++.. +..++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~vLgv~~~--a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDRN--ASQEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 699999999995 5577999999999999999996432 33477899999999999999999999986
No 81
>KOG0716|consensus
Probab=99.43 E-value=1.3e-13 Score=130.42 Aligned_cols=66 Identities=30% Similarity=0.463 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
.|+|++||+|++ ++.++|||+||+|+++||||+.+..++ +..+|.+||+||++|+||.+|-.|+-.
T Consensus 31 ~~LYdVLgl~k~--at~d~IKKaYR~L~~k~HPD~~gd~P~-----~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 31 LDLYDVLGLPKT--ATKDEIKKAYRKLALKYHPDKNGDNPE-----ATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hHHHHHhCCCcc--cchHHHHHHHHHHHHHhCCCcCCCCch-----hHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 379999999995 556789999999999999999876532 678999999999999999999999853
No 82
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.5e-13 Score=143.89 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++... .++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 4 RDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKEE------GADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred CChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 5999999999965 467999999999999999997532 256789999999999999999999996
No 83
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.42 E-value=6.2e-11 Score=124.45 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhh-----hccCccce-EEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCC
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-----LDKNIFEG-IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDS 347 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~-----~~~~~~~~-~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 347 (634)
....+.+.++++.||++...+..+|.|.+-.+. ........ .++++|+|+++|++++++-+...+ ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEe
Confidence 567788999999999999999999999877663 12221333 499999999999999986443222 3447
Q ss_pred CccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHH
Q psy8852 348 NLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 427 (634)
Q Consensus 348 ~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~ 427 (634)
.+||.+|++.+.+.+ +.. ...||+.|...+.... .-.+++++.+++
T Consensus 217 ~~G~~~i~~~i~~~~----~~~----------~~~Ae~~k~~~~~~~~--------------------~~~~~~~~~~~~ 262 (348)
T TIGR01175 217 PFGTRQLTSELSRAY----GLN----------PEEAGEAKQQGGLPLL--------------------YDPEVLRRFKGE 262 (348)
T ss_pred echHHHHHHHHHHHc----CCC----------HHHHHHHHhcCCCCCc--------------------hhHHHHHHHHHH
Confidence 899999999887422 222 3677888765332111 012345666666
Q ss_pred HHHHHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC-------------------CCChhhHHHHH
Q psy8852 428 TILLSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT-------------------SIDPDKAVVFG 486 (634)
Q Consensus 428 ~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~-------------------~~~p~~ava~G 486 (634)
+...|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++.. ...|..++|.|
T Consensus 263 l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~a~G 342 (348)
T TIGR01175 263 LVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPALMTALG 342 (348)
T ss_pred HHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHHHHHHhh
Confidence 666677766532 122346899999999999999999999999864421 13456788888
Q ss_pred HHHHH
Q psy8852 487 AAIQA 491 (634)
Q Consensus 487 Aa~~a 491 (634)
+|+++
T Consensus 343 lalr~ 347 (348)
T TIGR01175 343 LALRG 347 (348)
T ss_pred HhhcC
Confidence 88764
No 84
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.4e-13 Score=142.14 Aligned_cols=64 Identities=30% Similarity=0.437 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++... .++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDAK------DAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 7999999999964 477999999999999999997521 256789999999999999999999987
No 85
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.4e-13 Score=142.54 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=57.4
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++... ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~iLgv~~~as--~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 4 RDYYEVLGVSRNAS--EDEIKKAYRKLAMKYHPDRNPGD-----KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred CChHHhcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCc-----HHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 59999999999654 77999999999999999997542 2267899999999999999999999986
No 86
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.40 E-value=2.9e-13 Score=137.95 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||++|||+++++ .++||+|||+|+++||||++.. ..+.++|++||+||++|+||.+|+.|+..
T Consensus 3 ~~d~y~~Lgv~~~a~--~~eik~ayr~la~k~HPD~~~~------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~ 68 (306)
T PRK10266 3 LKDYYAIMGVKPTDD--LKTIKTAYRRLARKYHPDVSKE------PDAEARFKEVAEAWEVLSDEQRRAEYDQL 68 (306)
T ss_pred cCChHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 379999999999655 6699999999999999999542 13678999999999999999999999963
No 87
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.7e-13 Score=142.24 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++.. ..++++|++|++||++|+||.+|+.|+.
T Consensus 5 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 5 RDYYEVLGVDRNAD--KKEIKKAYRKLARKYHPDVSEE------EGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred CChHHhhCCCCCCC--HHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 49999999999655 7799999999999999999642 2367899999999999999999999987
No 88
>KOG0719|consensus
Probab=99.39 E-value=4.2e-13 Score=123.44 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=59.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|.|++|||.++ ++.++|++|||+||+++|||+.+ ++....+..+|++++.||++|+|..+|+.|+-
T Consensus 14 ~d~YevLGVer~--a~~~eIrkAY~klal~~HPDk~~---eed~~ea~~kFq~l~k~y~iLsDeekR~~YDe 80 (264)
T KOG0719|consen 14 KDLYEVLGVERD--ATDKEIRKAYHKLALRLHPDKNH---EEDKVEATEKFQQLQKAYQILSDEEKRAVYDE 80 (264)
T ss_pred cCHHHHhhhccc--CCHHHHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 489999999996 45889999999999999999965 45566788999999999999999999999975
No 89
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=5.3e-13 Score=139.84 Aligned_cols=64 Identities=27% Similarity=0.470 Sum_probs=56.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++ ++.++||+|||+|+++||||+++.. .++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~vLgv~~~--a~~~eik~ayr~la~~~HPD~~~~~------~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 3 ADYYEILGVSRD--ADKDELKRAYRRLARKYHPDVNKEP------GAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CChhhhcCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 699999999995 5578999999999999999997532 256789999999999999999999986
No 90
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.4e-13 Score=124.66 Aligned_cols=110 Identities=35% Similarity=0.555 Sum_probs=101.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc-CCCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDL 80 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~-~~~~ 80 (634)
.|||.++|+++.|.++...++..|+.+++.+|||++...+..++..+.+.+..+|.||.||+||..|+.|++.+. |...
T Consensus 1 ~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~~ 80 (174)
T COG1076 1 SDGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLDH 80 (174)
T ss_pred CCcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccc
Confidence 379999999999999999999999999999999999999999998899999999999999999999999999997 8777
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 81 NTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 81 ~~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
..+..+..+..|+|++|+|++++..++....
T Consensus 81 ~~e~~~l~~~~~l~~~~~~~~e~~~~~~~~~ 111 (174)
T COG1076 81 AKERQTLRDIAFLLEQSELREELEEAREQLD 111 (174)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHccc
Confidence 7776777789999999999999999887665
No 91
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.37 E-value=5.2e-13 Score=139.34 Aligned_cols=63 Identities=27% Similarity=0.447 Sum_probs=55.9
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
|||++|||++++ +.++||+|||+|+++||||+++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKD------KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 799999999965 57799999999999999999751 2256799999999999999999999976
No 92
>KOG0691|consensus
Probab=99.36 E-value=7.9e-13 Score=130.40 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=60.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||+||||... .+.++|++|||+.+++|||||++++|. |.++|+.+.+||++|+||..|+.|+-.+
T Consensus 5 ~dyY~lLgi~~~--at~~eIkKaYr~kaL~~HPDKNp~dP~-----A~ekFq~L~eAy~VL~D~~~R~~YDk~~ 71 (296)
T KOG0691|consen 5 TDYYDLLGISED--ATDAEIKKAYRKKALQYHPDKNPGDPQ-----AAEKFQELSEAYEVLSDEESRAAYDKLR 71 (296)
T ss_pred chHHHHhCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 599999999985 557899999999999999999887664 7789999999999999999999999765
No 93
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.36 E-value=2.2e-12 Score=141.80 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=71.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
++||++|||+++++ ..+||+|||+||++|||||++.. .+.++|+.|++||++||||.+|+.|+. +|...-
T Consensus 573 ~dYYdILGVs~dAS--~~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp~kRk~YD~--~G~~Gl 642 (1136)
T PTZ00341 573 TLFYDILGVGVNAD--MKEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDIDKKKMYNK--FGYDGI 642 (1136)
T ss_pred CChHHHcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCHHHHHHHhh--cccccc
Confidence 58999999999654 77999999999999999997542 256799999999999999999999986 444321
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.. ....||.+.. ++.--+.+.+.-....
T Consensus 643 ~~-~~~iDP~~Ff-mlFgse~F~dYiG~l~ 670 (1136)
T PTZ00341 643 KG-VNFIHPSIFY-LLASLEKFADFTGSPQ 670 (1136)
T ss_pred CC-CCccCHHHHH-HHhhhHHHHHhcCCHH
Confidence 11 2345665443 3444455555544443
No 94
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.36 E-value=5.4e-11 Score=124.06 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhcc---C--ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCC
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK---N--IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 348 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~---~--~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 348 (634)
....+...++++.||++...+=-+|.|.+-.+.... . ...+.++++|+|+.++.+++++-+...+ .....
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 566688889999999999878777777665554421 1 1346899999999999999876433222 33468
Q ss_pred ccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHH
Q psy8852 349 LGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRT 428 (634)
Q Consensus 349 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~ 428 (634)
+||.++++.+.+.+.-. ..++|+.|..-+... +...+++.+.++++
T Consensus 210 ~G~~~l~~~i~~~~~i~--------------~~~Ae~~k~~~~l~~--------------------~~~~~~l~~~~~~l 255 (340)
T PF11104_consen 210 IGGNDLTEAIARELGID--------------FEEAEELKRSGGLPE--------------------EYDQDALRPFLEEL 255 (340)
T ss_dssp -SHHHHHHHHHHHTT----------------HHHHHHHHHHT--------------------------HHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHhcCCC--------------HHHHHHHHhcCCCCc--------------------chHHHHHHHHHHHH
Confidence 99999999998643221 256666666522111 23345667777777
Q ss_pred HHHHHHHHHH--cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC---------CCC----------ChhhHHHHHH
Q psy8852 429 ILLSSKALMD--ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL---------TSI----------DPDKAVVFGA 487 (634)
Q Consensus 429 ~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~---------~~~----------~p~~ava~GA 487 (634)
...|++.++- .......|+.|+|+||+++++.+.+.|++.++.++. .+. .|..++|.|+
T Consensus 256 ~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GL 335 (340)
T PF11104_consen 256 AREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGL 335 (340)
T ss_dssp HHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHH
Confidence 7777777662 223345799999999999999999999999986532 111 3678999999
Q ss_pred HHHH
Q psy8852 488 AIQA 491 (634)
Q Consensus 488 a~~a 491 (634)
|++.
T Consensus 336 AlR~ 339 (340)
T PF11104_consen 336 ALRG 339 (340)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
No 95
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=8.4e-13 Score=139.07 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++++ .++|++|||+|+++||||+++.. ..++++|++|++||++|+||.+|+.|+.
T Consensus 5 ~~~y~~Lgv~~~a~--~~eik~ayr~la~~~HpD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 5 RDYYEVLGVSKTAT--VDEIKKAYRKKAIQYHPDKNPGD-----KEAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCC-----hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 49999999999655 66999999999999999997643 2367889999999999999999999986
No 96
>KOG0715|consensus
Probab=99.34 E-value=1.4e-12 Score=130.34 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGI 78 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~ 78 (634)
+|||++|||+++++ .+|||+||++|+++||||-+... .+.++|++|.+||++|+|+.+|++|+..+.+.
T Consensus 43 ~d~Y~vLgv~~~At--~~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNAT--LSEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCC--HHHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 48999999999655 77999999999999999986654 47789999999999999999999999877543
No 97
>KOG0721|consensus
Probab=99.32 E-value=3.3e-12 Score=116.76 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
|.|++|||++.++ .+|||+|||+|+.+|||||.+.. ...++.+..|++||+.|+|+..|.+|+. +|.+
T Consensus 100 DPyEILGl~pgas--~~eIKkaYR~LSik~HPDK~~~~-----~~~e~~~~~I~KAY~aLTD~~sreN~ek--YG~P 167 (230)
T KOG0721|consen 100 DPYEILGLDPGAS--EKEIKKAYRRLSIKYHPDKQPPE-----EGDEEFFEAIAKAYQALTDKKSRENWEK--YGNP 167 (230)
T ss_pred CcHHhhCCCCCCC--HHHHHHHHHHhhhhhCCCcCCCc-----chhHHHHHHHHHHHHHhcchhhHHHHHH--hCCC
Confidence 8999999999654 77999999999999999997653 2245677789999999999999999965 6655
No 98
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.31 E-value=1.1e-10 Score=120.15 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=100.8
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
..+.+++||.||.+.+..... ....++|+|+||+|+|++++.- +.-.+-...+...+|-..+-+.+.+.+.. ....
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-~~~~ 216 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRS-AGID 216 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---SBH
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHH-hcCC
Confidence 467899999999998876644 4567999999999999998852 21122333455678988888888877665 2111
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeE
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNV 449 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V 449 (634)
. +......+..... -+..++.. + ... =..+++.++++..++++.+-+.+.+.+ ..+++.|
T Consensus 217 ~-s~~~~~~ii~~~~-~~~~~~~~------i---~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I 276 (318)
T PF06406_consen 217 T-SELQIDDIIRNRK-DKGYLRQV------I---NDE-----DVIDDVSEVIEEAVEELINRILRELGD----FSDIDRI 276 (318)
T ss_dssp H-HHHHHHHHHHTTT--HHHHHHH------S---SSH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEE
T ss_pred C-cHHHHHHHHHhhh-ccceeccc------c---cch-----hhHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCeE
Confidence 1 0011111111000 00000000 0 000 012444555555565655555555543 2367899
Q ss_pred EEEcCCcCcHHHHHHHHhhcc---CCcCCCCChhhHHHHHHH
Q psy8852 450 ILVGGSTRMKHIHEGVSNFFK---TTLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 450 iLvGG~s~~p~v~~~l~~~f~---~~~~~~~~p~~ava~GAa 488 (634)
+|+||++. .+.+.|++.|+ .++....||..|.|+|-+
T Consensus 277 ~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 277 FFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp EEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred EEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 99999987 89999999997 356678999999999965
No 99
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.30 E-value=5.4e-12 Score=135.68 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=57.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
+|||++|||+++ ++.++||++||+|+++||||++.. ..+.++|++||+||++|+||.+|+.|+...
T Consensus 2 ~DYYeVLGVs~d--AS~eEIKKAYRKLAKKyHPDKn~~------~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRD--ADEQEIKKAFRKLAKKYHPDRNKA------PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 699999999995 557799999999999999999764 225678999999999999999999999744
No 100
>KOG0679|consensus
Probab=99.21 E-value=8.6e-10 Score=109.42 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=126.0
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec--------CCcEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP--------DGKIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~--------~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
-.|-||.|+..++++|....-|..+ +||++...- .+..+++..|..
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~------------------ 65 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIH------------------ 65 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhcc------------------
Confidence 3588999999999999887766655 788887521 112355555422
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AA 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa 284 (634)
.+-.. .++ .-.+.++.+.-.+++.+.++|..+.-.+ .+..-..++||-|++=+.+.|+.+.+ +.
T Consensus 66 ~pr~g-------mEv-------~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmF 130 (426)
T KOG0679|consen 66 VPRPG-------MEV-------KTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMF 130 (426)
T ss_pred CCCCC-------Cee-------ccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHH
Confidence 11110 111 0112345677788999999998864332 23334679999998778888877666 56
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+...++...+..+|+++|++-+. .+.+|+|+|++++.++=+ .+|.+-..+... .++||+.++..+.+.+..
T Consensus 131 E~~nvPAf~L~k~~v~~AFA~Gr------stalVvDiGa~~~svsPV--~DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~ 201 (426)
T KOG0679|consen 131 EKLNVPAFYLAKTAVCTAFANGR------STALVVDIGATHTSVSPV--HDGYVLQKGVVK-SPLAGDFLNDQCRQLLEP 201 (426)
T ss_pred hhcCCceEEEechHHHHHHhcCC------CceEEEEecCCCceeeee--ecceEeeeeeEe-cccchHHHHHHHHHHHhh
Confidence 77788999999999999998753 356999999999888844 234333334444 789999999999998887
Q ss_pred H
Q psy8852 365 N 365 (634)
Q Consensus 365 ~ 365 (634)
+
T Consensus 202 ~ 202 (426)
T KOG0679|consen 202 K 202 (426)
T ss_pred c
Confidence 5
No 101
>PHA03102 Small T antigen; Reviewed
Probab=99.20 E-value=1.3e-11 Score=109.90 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=53.2
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.+|++|||++++..+.++||+|||++++++||||.+ ..+++++||+||++|+|+.+|+.|+.
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---------~~e~~k~in~Ay~~L~d~~~r~~yd~ 67 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---------DEEKMKELNTLYKKFRESVKSLRDLD 67 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---------hhHHHHHHHHHHHHHhhHHHhccccc
Confidence 468999999976336789999999999999999942 13578899999999999999999955
No 102
>KOG0624|consensus
Probab=99.19 E-value=1.7e-11 Score=119.56 Aligned_cols=67 Identities=22% Similarity=0.402 Sum_probs=61.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
+|||++|||.++++ .+||-+|||+++.+||||.|+. ++|++.++++|..|..|-++|+||.+|..++
T Consensus 394 RDYYKILGVkRnAs--KqEI~KAYRKlAqkWHPDNFqd--EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD 460 (504)
T KOG0624|consen 394 RDYYKILGVKRNAS--KQEITKAYRKLAQKWHPDNFQD--EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD 460 (504)
T ss_pred chHHHHhhhccccc--HHHHHHHHHHHHHhcCCccccC--HHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc
Confidence 59999999999655 8899999999999999999974 5678889999999999999999999999996
No 103
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4e-11 Score=118.02 Aligned_cols=68 Identities=26% Similarity=0.440 Sum_probs=60.2
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
+.+||++|||+++ ++..+|+++||++++++|||++..... .+.+.|+.||+||++|+||.+|+.|+..
T Consensus 5 ~~~~y~iLgv~~~--as~~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPN--ASLEEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 4699999999975 557799999999999999999876553 5778999999999999999999999973
No 104
>KOG0722|consensus
Probab=99.10 E-value=4.3e-11 Score=111.30 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=59.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN 76 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~ 76 (634)
.|.|++|||.+++ +.++|.+|||+|++++|||++.+... .+.|..|.+||++|+|...|+.|+-.+.
T Consensus 33 enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~~e~------k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 33 ENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRDPES------KKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred hhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCCchh------hhhhhhhhcccccccchhhHHhHHHHhc
Confidence 5899999999965 68899999999999999999875542 2788999999999999999999998764
No 105
>KOG0720|consensus
Probab=99.03 E-value=3.8e-10 Score=114.40 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=60.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 77 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~ 77 (634)
.|+|.+||||. ++|.++||+.||+++..+||||+. .+.|++.|..+.-||++|+|+.+|.+|++++.-
T Consensus 235 ~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~------~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 235 LDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM------IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC------ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 58999999997 566889999999999999999975 244788999999999999999999999998753
No 106
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.03 E-value=2e-10 Score=115.24 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
|.||+||+..+.+ ..+||++||+|+.+|||||.+.-.+.++...++.+.+|++||..|+|...|..|++ +|.+
T Consensus 99 DPyEILGI~~~ts--~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~--yGtP 171 (610)
T COG5407 99 DPYEILGIDQDTS--ERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN--YGTP 171 (610)
T ss_pred ChHHhhcccCCCc--HHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh--cCCC
Confidence 7899999999766 55999999999999999999988888999999999999999999999999999987 5554
No 107
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.99 E-value=4.3e-10 Score=111.64 Aligned_cols=62 Identities=15% Similarity=0.338 Sum_probs=53.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHcCCh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQK--SKIDQDASVKLSTYLNKAYSILKDP 65 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~--~~~~~~~~~~~~~~i~~Ay~~L~d~ 65 (634)
.++|++|||+++ ++.++||++||+|+++||||++.+. +++..+.+++++++||+||++|+..
T Consensus 200 ~~ay~vLgv~~~--as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSES--DDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCCC--CCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999996 5578999999999999999998653 4556678899999999999999863
No 108
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=2.7e-07 Score=90.76 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccC-----ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCcc
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN-----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 350 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 350 (634)
......+|++.|||+...+=-|.-|.--+|..-.. ..-..++|+|+|+..+.++++.-+...| ..+..+|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCc
Confidence 34566789999999988787788887766652111 1223478999999999999887665444 4458899
Q ss_pred chhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHH
Q psy8852 351 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 430 (634)
Q Consensus 351 G~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~ 430 (634)
|+.+++.+.+. |. --...++.+|....... +--.+++.++++.+.+
T Consensus 225 ~~Qlt~~i~r~----~~----------L~~~~a~~~k~~~~~P~--------------------~y~~~vl~~f~~~l~~ 270 (354)
T COG4972 225 TDQLTQEIQRA----YS----------LTEEKAEEIKRGGTLPT--------------------DYGSEVLRPFLGELTQ 270 (354)
T ss_pred HHHHHHHHHHH----hC----------CChhHhHHHHhCCCCCC--------------------chhHHHHHHHHHHHHH
Confidence 99999998742 22 22255666666544333 1223556666666666
Q ss_pred HHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCc
Q psy8852 431 LSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 431 ~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 473 (634)
.|.+.|+-. .-...+|+.|+|.||++.+-.+.+.+.+.++.++
T Consensus 271 ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 271 EIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 666666532 1233579999999999999999999999987644
No 109
>KOG0550|consensus
Probab=98.88 E-value=1.3e-09 Score=109.21 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=60.2
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||.+||+.+.++.+ +|+++||++++.+|||+++.. +..++.+|..+-+||.+|+||.+|..|+-
T Consensus 373 kd~ykilGi~~~as~~--eikkayrk~AL~~Hpd~~ags----q~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 373 KDWYKILGISRNASDD--EIKKAYRKLALVHHPDKNAGS----QKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhHHHHhhhhhhcccc--hhhhHHHHHHHHhCCCcCcch----hHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 5899999999988866 999999999999999998765 56688899999999999999999999964
No 110
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.82 E-value=3.4e-09 Score=89.20 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILK 63 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~ 63 (634)
++|++|||+++++ .++|+++||+|++++|||+. .+ ...+++||+||++|.
T Consensus 66 eAy~ILGv~~~As--~~eIkkaYRrLa~~~HPDkg--Gs-------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 66 EAYKILNISPTAS--KERIREAHKQLMLRNHPDNG--GS-------TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHcCCCCCCC--HHHHHHHHHHHHHHhCCCCC--CC-------HHHHHHHHHHHHHHh
Confidence 7899999999654 77999999999999999983 11 235678999999984
No 111
>PHA02624 large T antigen; Provisional
Probab=98.77 E-value=5.4e-09 Score=111.92 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=53.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
+++|++|||++++--+..+||+|||++++++||||.. +.++|++||+||++|+|+.+|+.|.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---------deekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---------DEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---------cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 3789999999976225779999999999999999932 2468899999999999999999995
No 112
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.77 E-value=3.4e-07 Score=97.27 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=121.7
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec----------CCcEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP----------DGKIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~----------~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
|.||.||..+++++..+..|..+ +|+++.... .+...+|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V--------~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~----------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTV--------FPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL----------- 68 (444)
T ss_pred EEEeCCCceEEeeecCCCCceee--------cccccccccccccccccccccccccCchhhhccCC-cc-----------
Confidence 89999999999999888777666 455554432 2234555555322110 00
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHH-HHHhCCCcCcEEEEeCCCCCHHHHHHHHH-H
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA-ENAVNNRIFGAVITVPAYFNDIQRQFTKN-A 283 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a-~~~~~~~~~~~viTVPa~~~~~qr~~l~~-a 283 (634)
.. ......++.+.-.+.+..+++++...- .......-..+++|-|..+....|+.+-+ .
T Consensus 69 ------------~~-------~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~ 129 (444)
T COG5277 69 ------------LE-------LRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELL 129 (444)
T ss_pred ------------ce-------eecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHH
Confidence 00 000122345666677888888877663 11112233479999999999999877655 5
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHH
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 363 (634)
++...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++=+-- |.. +.....-..+||++++..|.+.+.
T Consensus 130 fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~D--G~~-l~~a~~ri~~gG~~it~~l~~lL~ 202 (444)
T COG5277 130 FETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVD--GIV-LPKAVKRIDIGGRDITDYLKKLLR 202 (444)
T ss_pred HHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeec--ccc-ccccceeeecCcHHHHHHHHHHHh
Confidence 77778888888988888888776442 36699999999999884432 211 222233378999999999999888
Q ss_pred HHH
Q psy8852 364 KNA 366 (634)
Q Consensus 364 ~~~ 366 (634)
...
T Consensus 203 ~~~ 205 (444)
T COG5277 203 EKY 205 (444)
T ss_pred hcc
Confidence 853
No 113
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.76 E-value=1.3e-07 Score=98.51 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=93.7
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEE
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNAAKL------------AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFD 327 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~aa~~------------aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~d 327 (634)
...-.+||.++. .++.++++++. ||++.-.++. |.|++.+...+ .++..++++|+|||||+
T Consensus 87 e~~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--Eke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 87 DSGAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--ERNTRVLNIDIGGGTAN 159 (475)
T ss_pred cccEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--hccCceEEEEeCCCceE
Confidence 334578887754 45555666665 5666555555 99998877643 37788999999999999
Q ss_pred EEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCce
Q psy8852 328 ISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKI 407 (634)
Q Consensus 328 vsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~ 407 (634)
+++++-+. +. ..+..++||++++.. -+ -.....++.. +++.+.+ . ++ ..
T Consensus 160 iaVf~~G~----l~-~T~~l~vGG~~IT~D-~~-----~~i~yis~~~-~~l~~~~-------~--------~~----~~ 208 (475)
T PRK10719 160 YALFDAGK----VI-DTACLNVGGRLIETD-SQ-----GRVTYISPPG-QMILDEL-------G--------LA----IT 208 (475)
T ss_pred EEEEECCE----EE-EEEEEecccceEEEC-CC-----CCEEEEChHH-HHHHHHc-------C--------CC----cc
Confidence 99987554 22 244478999888544 10 0000011111 1111110 0 00 01
Q ss_pred eEEEEeHHHHHHHHHHHHHHHHHHHHHH-------HHHc-CCC-cCCCCeEEEEcCCcCc
Q psy8852 408 VNITIDMKQFFTITQHLVNRTILLSSKA-------LMDA-NLT-IKDINNVILVGGSTRM 458 (634)
Q Consensus 408 ~~~~itr~~~e~~~~~~~~~~~~~i~~~-------l~~~-~~~-~~~i~~ViLvGG~s~~ 458 (634)
.--.++.+++..+|+.+.+-+.+.+... |-.. .++ ...++.|.+.||-+..
T Consensus 209 ~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 209 DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1124566777777777776666665411 1111 222 3568999999998763
No 114
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.67 E-value=5.6e-06 Score=93.42 Aligned_cols=311 Identities=17% Similarity=0.206 Sum_probs=184.0
Q ss_pred EEecHhHHhhhcc----CCCchhhhhhhhcCCCCCCcc----------cCC------CCe-EEecCCCceEEEe-c--C-
Q psy8852 179 IYVGKKAKITQNI----DPKNTISSIKRFIARDLKNIN----------TNS------FPY-DFQNKFGMLHIKT-I--S- 233 (634)
Q Consensus 179 ~~~G~~A~~~~~~----~~~~~i~~~k~~lg~~~~~~~----------~~~------~~~-~i~~~~~~~~~~~-~--~- 233 (634)
.-||.+|...... .....+.+.||+|.......+ ... .|+ ...+++|.+.+.. . .
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 4578888655432 333457889999965432110 011 111 1115666665543 1 1
Q ss_pred -----cccCHHhHHHHHHHHHHHHHHHHhCC--------------CcCcEEEEeCCCCCHHHHHHHHHHHHHc-------
Q psy8852 234 -----GIKSPIEISAQIFITLKKIAENAVNN--------------RIFGAVITVPAYFNDIQRQFTKNAAKLA------- 287 (634)
Q Consensus 234 -----~~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~~viTVPa~~~~~qr~~l~~aa~~a------- 287 (634)
-.+|-.-+++.+|..+..+|..+.+. ...++++|||+.....+|+.+++.++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 25677789999999998888776643 3557999999999999999998888766
Q ss_pred -CCc---------------------eeeeecchhHHHHHhhhcc------------------Cc----------cceEEE
Q psy8852 288 -GLN---------------------VLRLLNEPTSAAIAYKLDK------------------NI----------FEGIFA 317 (634)
Q Consensus 288 -Gl~---------------------~~~li~Ep~AAa~~y~~~~------------------~~----------~~~~vl 317 (634)
|.. +..=-+|.+|.=+-|.++. .. +.-+|.
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 431 1111245555444443211 00 234789
Q ss_pred EEEeCCCeEEEEEEEEe----CC-eEEE----EEEcCCCCccchhHHHHHHH-HHHHHHhhc----c-CCHHH-------
Q psy8852 318 VYDLGGGTFDISILKFK----NG-VFKV----LSVGGDSNLGGDDFDYCLFS-WIVKNAFLK----K-LSYKD------- 375 (634)
Q Consensus 318 V~D~GggT~dvsv~~~~----~~-~~~v----~~~~~~~~lGG~~id~~l~~-~l~~~~~~~----~-~~~~~------- 375 (634)
-+|+||||||+.|-++. .+ ...+ +-..| -.+.|++|=..+++ ++...+... . .++..
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG 648 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFG 648 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhC
Confidence 99999999999997765 22 2221 12233 56788888665544 333333211 1 11110
Q ss_pred -----------------------HHHHHHHHHHHHH-------------Hhc-CCcceE--------EE-EEe----cCC
Q psy8852 376 -----------------------VNILMIKSREIKE-------------LLS-YQSSVK--------LN-VKL----SDK 405 (634)
Q Consensus 376 -----------------------~~~L~~~~e~~K~-------------~Ls-~~~~~~--------i~-i~~----~~g 405 (634)
..+++.++|+.-. .|. ..++.. +. +.. ++=
T Consensus 649 ~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 649 GDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 0234444544221 111 000000 00 000 011
Q ss_pred ceeEEEEeHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC--------
Q psy8852 406 KIVNITIDMKQFFTITQ---HLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL-------- 474 (634)
Q Consensus 406 ~~~~~~itr~~~e~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~-------- 474 (634)
.++.+.|+..++...+. -.+...+..+-+++...+ -|-++|+|--|++|.|+..++...+.++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34567899999988775 555666666666666654 46899999999999999999999865321
Q ss_pred ------------CCCChhhHHHHHHHHHHhHhc
Q psy8852 475 ------------TSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 475 ------------~~~~p~~ava~GAa~~a~~~~ 495 (634)
.-.||...||.||.+++....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 235899999999998875443
No 115
>KOG0714|consensus
Probab=98.63 E-value=1.7e-08 Score=103.76 Aligned_cols=68 Identities=25% Similarity=0.397 Sum_probs=56.9
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||++||++++++.+ +|++||+.+++++|||++. +. +..++.++.++++||++|+||.+|..|+..
T Consensus 2 ~~d~~~~l~i~~~as~~--~i~ka~~~~a~~~hpdk~~--~~--~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~ 69 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE--DIKKAYRKLALKYHPDKNP--SP--KEVAEAKFKEIAEAYEVLSDPKKRKIYDQY 69 (306)
T ss_pred cccHHHHhCccccccHH--HHHHHHHHHHHhhCCCCCC--Cc--hhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence 47999999999876643 9999999999999999933 22 334445899999999999999999999764
No 116
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.58 E-value=4.9e-05 Score=76.65 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 418 FTITQHLVNRTILLSSK-ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
|+++..+...+..-+.. +++...+. + -|+|+||.+....+.+.+++.+|.+++++.+|...-|.|||+++..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 45555555555444443 55554433 1 2999999999999999999999999999999999999999999864
No 117
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.55 E-value=2.9e-05 Score=77.23 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=42.7
Q ss_pred CeEEEEcCCcCcHHHHHHHHhhccCCcC-CCCChhhHHHHHHHHHHhH
Q psy8852 447 NNVILVGGSTRMKHIHEGVSNFFKTTLL-TSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 447 ~~ViLvGG~s~~p~v~~~l~~~f~~~~~-~~~~p~~ava~GAa~~a~~ 493 (634)
..|+|+||.++.|.+++.+++.++.++. .+.+|..+.|.|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4699999999999999999999998887 5778999999999999864
No 118
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.52 E-value=2e-05 Score=81.51 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=43.5
Q ss_pred CeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 447 NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 447 ~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
+.|+++||.++.+.+.+.+++.+|.+++.+.+|..+.|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999984
No 119
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.47 E-value=2.7e-06 Score=84.57 Aligned_cols=170 Identities=13% Similarity=0.157 Sum_probs=103.0
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
..++|-+|-+.....-.+.. + .|+|+||..+-+..++ ++.+.-.........|+-.|.+.+++.+ +.+.
T Consensus 73 ~~~~ei~~~~~g~~~~~~~~-~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l----~~~~-- 141 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPEA-R--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL----GVSV-- 141 (248)
T ss_pred CceEEhhHHHHHHHHHCCCC-C--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc----CCCH--
Confidence 36778888766544433312 2 4999999988888776 5544333344445667777777776533 2221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc--ceEEEEEecCCc--eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC-
Q psy8852 373 YKDVNILMIKSREIKELLSYQS--SVKLNVKLSDKK--IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDIN- 447 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~--~~~i~i~~~~g~--~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~- 447 (634)
++++..+..-.... +....+-...+. .+.-..++ ++++..+++.+...+.+.+...+ ++
T Consensus 142 --------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~---~di~~~~~~~va~~i~~~~~~~~-----~~~ 205 (248)
T TIGR00241 142 --------EELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKK---EDILAGVYESIAERVAEMLQRLK-----IEA 205 (248)
T ss_pred --------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC-----CCC
Confidence 33333333311111 111222110000 00001122 45566666666666666555433 44
Q ss_pred eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 448 NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 448 ~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.|+|+||.+++|++.+.+++.++.++..+.+|..+.|+|||+
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 799999999999999999999999999999999999999997
No 120
>KOG1150|consensus
Probab=98.39 E-value=4.4e-07 Score=81.83 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=52.1
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSI 70 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~ 70 (634)
|.|++|.+.|. .+.++|++.||+|+...||||++.. ++-|...|--|.+||+.|-|+..|..
T Consensus 54 NpfeVLqIdpe--v~~edikkryRklSilVHPDKN~Dd----~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 54 NPFEVLQIDPE--VTDEDIKKRYRKLSILVHPDKNPDD----AERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ChHHHHhcCCC--CCHHHHHHHHHhhheeecCCCCccc----HHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 78999999995 5567999999999999999997643 23366788899999999999996653
No 121
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.7e-07 Score=85.43 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCC
Q psy8852 2 KNYFDFFNLPK-CFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDL 80 (634)
Q Consensus 2 ~~~~~~l~~~~-~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~ 80 (634)
.|+|.+|||+. .+..++.+|.++.++...+||||+.+...... ....|..|..||++|+|+.+|.+|+.--...++
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~---~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv 119 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKG---CDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV 119 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCC---cHHHHHHHHHHHHHhccHHHHhhccccccccCC
Confidence 47899999996 56677889999999999999999975443332 346789999999999999999999876665555
Q ss_pred ccccccCCCHHHH
Q psy8852 81 NTKLNLNFSHDFL 93 (634)
Q Consensus 81 ~~~~~~~~~~~~l 93 (634)
.... ...+.+|.
T Consensus 120 ppp~-~~t~~~Ff 131 (379)
T COG5269 120 PPPR-IYTPDEFF 131 (379)
T ss_pred CCcc-CCCchhHH
Confidence 5442 23344554
No 122
>KOG0676|consensus
Probab=98.36 E-value=2.1e-06 Score=88.07 Aligned_cols=272 Identities=20% Similarity=0.235 Sum_probs=148.2
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec---------CCcEEecHhHHhhhccCCCchhhhhhhhc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP---------DGKIYVGKKAKITQNIDPKNTISSIKRFI 204 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~---------~~~~~~G~~A~~~~~~~~~~~i~~~k~~l 204 (634)
..|-||-|+.++++++..+..|.. .+||+|...+ .+...+|.+|.... -|
T Consensus 8 ~~vViDnGsg~~KaGfag~~~P~~--------v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~-------------~l 66 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFAGDDAPRA--------VFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR-------------TL 66 (372)
T ss_pred ceEEEECCCceeecccCCCCCCce--------ecceeccccccccccccccccccccchhhhccc-------------cc
Confidence 468999999999999875444432 3677774311 12345566664322 01
Q ss_pred CCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q psy8852 205 ARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 284 (634)
Q Consensus 205 g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa 284 (634)
- .| +..+.++-.+-+..++.|+...-..... ....+++|-|..+...-|+.|.+..
T Consensus 67 ~----------~P-------------ie~Giv~~wd~me~iw~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~ 122 (372)
T KOG0676|consen 67 K----------YP-------------IERGIVTDWDDMEKIWHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIM 122 (372)
T ss_pred c----------Cc-------------cccccccchHHHHHHHHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHh
Confidence 0 11 1224455556668888888733222222 2367999999999999998887754
Q ss_pred -HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEE-EEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 285 -KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDIS-ILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 285 -~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvs-v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
+..+.+.+.+ .-.|..++++... =+|+|+|.|-+++. +++ | +.+.+.-....+||.++++-+...|
T Consensus 123 FE~fnvpa~yv--a~qavlya~g~tt------G~VvD~G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L 190 (372)
T KOG0676|consen 123 FETFNVPALYV--AIQAVLYASGRTT------GLVVDSGDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQL 190 (372)
T ss_pred hhhcCccHhHH--HHHHHHHHcCCee------EEEEEcCCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHH
Confidence 4445555444 2233333343333 38999999976544 332 2 1222333457899999999777777
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc------------ceEEE--EEecCCceeEEEEeHHHHH---HHHHHHH
Q psy8852 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQS------------SVKLN--VKLSDKKIVNITIDMKQFF---TITQHLV 425 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------------~~~i~--i~~~~g~~~~~~itr~~~e---~~~~~~~ 425 (634)
.+ -+...... . -+.-++.+|+.++... ...+. ..+.||.. +.+.-+.|. -+++|-+
T Consensus 191 ~~-~g~s~~~~-~---~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~ 263 (372)
T KOG0676|consen 191 RK-RGYSFTTS-A---EFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSL 263 (372)
T ss_pred Hh-cccccccc-c---HHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhh
Confidence 66 11111100 0 0112344444443221 11111 12445544 333332221 2222211
Q ss_pred -----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 426 -----NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 426 -----~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
..+-+.+-..+.++.++ +.-...|+|+||++-.|++.+++.+..
T Consensus 264 ~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 264 LGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred cCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHH
Confidence 22334444444444332 223478999999999999999888766
No 123
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.27 E-value=0.00057 Score=67.20 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=37.7
Q ss_pred eEEEEcCCcCcHHHHHHHHhhccC-C----cCCCCChhhHHHHHHHHHH
Q psy8852 448 NVILVGGSTRMKHIHEGVSNFFKT-T----LLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 448 ~ViLvGG~s~~p~v~~~l~~~f~~-~----~~~~~~p~~ava~GAa~~a 491 (634)
.|+|+||.++.+.+.+.|++.++. . +..+.+|..+.|.|||+++
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 599999999999999999998843 2 4456789999999999874
No 124
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.23 E-value=2.5e-05 Score=75.18 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=103.5
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 283 AAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 283 aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
.-+..|.++..-=.|+.+|.+....+.. .+..+.++|+|||+||.+++.-.+. +.-++-.| .|+.++..|.
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTmlI~--- 174 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTMLIN--- 174 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHH---
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHHHHH---
Confidence 3445688877777899999998877776 7777899999999999999876543 33333332 3555555543
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc---------eEEEE---Ee-----------cCCceeE--EEEeHHHH
Q psy8852 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSS---------VKLNV---KL-----------SDKKIVN--ITIDMKQF 417 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------~~i~i---~~-----------~~g~~~~--~~itr~~~ 417 (634)
..++... +.-+|.+|+---..-+ .++.+ ++ .++.-.. ..++-+++
T Consensus 175 -sELGl~d---------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEki 244 (332)
T PF08841_consen 175 -SELGLED---------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKI 244 (332)
T ss_dssp -HHCT-S----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHH
T ss_pred -HhhCCCC---------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHH
Confidence 3343322 2456777764211111 11111 00 0111111 12333333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHcCC--CcCCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHH
Q psy8852 418 FTITQHLVNR-TILLSSKALMDANL--TIKDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFG 486 (634)
Q Consensus 418 e~~~~~~~~~-~~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~G 486 (634)
..+=...-++ +..-+.++|++... +..+|+.|+||||++.-.-|-+++.+.+.. ++.-..-|..|||.|
T Consensus 245 r~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATG 324 (332)
T PF08841_consen 245 RSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATG 324 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHH
Confidence 3332222222 12233344554332 245789999999999888888888877621 344456799999999
Q ss_pred HHHHH
Q psy8852 487 AAIQA 491 (634)
Q Consensus 487 Aa~~a 491 (634)
.++..
T Consensus 325 Lvlsy 329 (332)
T PF08841_consen 325 LVLSY 329 (332)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99754
No 125
>PRK13317 pantothenate kinase; Provisional
Probab=98.13 E-value=0.00062 Score=68.28 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCCeEEEEc-CCcCcHHHHHHHHhhc---cCCcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DINNVILVG-GSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i~~ViLvG-G~s~~p~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
.++.|+++| |.++.|.+++.+.+.+ +.+++.+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 7999999999999988 57788899999999999999875
No 126
>PRK10331 L-fuculokinase; Provisional
Probab=97.99 E-value=0.0004 Score=76.01 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTIT-QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.++...+ +.+.-.+...++ .+++.+ ...++.|.++||+++++.+.+.+.+.+|.++..... .++.++|||+
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~ 432 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQ-VLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAM 432 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHH
Confidence 34666665433 333333333333 344332 124789999999999999999999999999976554 4688999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.+.++
T Consensus 433 la~~~~G~~~ 442 (470)
T PRK10331 433 FGWYGVGEFS 442 (470)
T ss_pred HHHHhcCCCC
Confidence 9987665443
No 127
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.92 E-value=0.0048 Score=66.25 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred eEEEEeHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC----------
Q psy8852 408 VNITIDMKQFFTITQHL---VNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL---------- 474 (634)
Q Consensus 408 ~~~~itr~~~e~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~---------- 474 (634)
..+.|.-.++.+.+-.- +......+-+++... +-|-++|+|--+|+|.++..++...+.++.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34566666666655433 223333333333332 456899999999999999999988754321
Q ss_pred ----------CCCChhhHHHHHHHHHHhHhcCC
Q psy8852 475 ----------TSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 475 ----------~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
+-.||...+|.||.+++..+.-.
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~r 850 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLELR 850 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhhcc
Confidence 23589999999999988765543
No 128
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0003 Score=77.44 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=54.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-++.+|.+.+-+-+--.....-+.|.+. +. .++.|.++||+++++.+.+++.+.+|.++..+... |+.+.|+|.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~-e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPEVE-EAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecCcc-cchHHHHHH
Confidence 34777776555544444444444555554 43 46799999999999999999999999999765444 444555555
Q ss_pred HHhHhc
Q psy8852 490 QANFLS 495 (634)
Q Consensus 490 ~a~~~~ 495 (634)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 544433
No 129
>KOG0797|consensus
Probab=97.74 E-value=0.00031 Score=72.99 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=85.8
Q ss_pred cccCHHhHHHHHHHHHHHHHHHHhCCCc-----CcEEEEeCCCCCHHHHHH-HHHHHHHcCCceeeeecchhHHHHHhhh
Q psy8852 234 GIKSPIEISAQIFITLKKIAENAVNNRI-----FGAVITVPAYFNDIQRQF-TKNAAKLAGLNVLRLLNEPTSAAIAYKL 307 (634)
Q Consensus 234 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~-----~~~viTVPa~~~~~qr~~-l~~aa~~aGl~~~~li~Ep~AAa~~y~~ 307 (634)
...+..++++++-+-+.-.....+..+. ..+|+-||..|.....+. +.-.....||....++.|+.||.+..++
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3556666666654444333444454433 369999999999876655 4556778899999999999999998876
Q ss_pred ccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 308 ~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
.. ..|||+|+-+|.++.++-+ . ....+.--...||.||++.|+-++++
T Consensus 275 ss------~CVVdiGAQkTsIaCVEdG--v-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 SS------ACVVDIGAQKTSIACVEDG--V-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred cc------eeEEEccCcceeEEEeecC--c-cccCceEEeccCCchHHHHHHHHHHh
Confidence 64 3899999999999877633 1 11222223567999999999865554
No 130
>KOG0677|consensus
Probab=97.65 E-value=0.0019 Score=61.57 Aligned_cols=193 Identities=19% Similarity=0.221 Sum_probs=119.7
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeE
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNA-AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 338 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~a-a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 338 (634)
.-.++.+|-|.--....|+.|-+. .+..||..+.+.-..+-+.++-++..+ +|+|-|.|-|.++=+--+ +
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG------vVvDSGDGVTHi~PVye~---~ 170 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG------VVVDSGDGVTHIVPVYEG---F 170 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce------EEEecCCCeeEEeeeecc---e
Confidence 345789999988888888887664 677899888776666655555554444 799999998887733211 1
Q ss_pred EEEEEcCCCCccchhHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHhcCCc-----------ceEEEEE---ec
Q psy8852 339 KVLSVGGDSNLGGDDFDYCLFSWIVKNA-FLKKLSYKDVNILMIKSREIKELLSYQS-----------SVKLNVK---LS 403 (634)
Q Consensus 339 ~v~~~~~~~~lGG~~id~~l~~~l~~~~-~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~---~~ 403 (634)
..-+-.+-..+.|+++++-+.+.+..+= .-.. ..=.+..+..|+.|+... ++++-++ +.
T Consensus 171 ~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~------tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLP 244 (389)
T KOG0677|consen 171 VLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNH------TADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLP 244 (389)
T ss_pred ehhhhhhhccccchhHHHHHHHHHHhhcccccc------ccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecC
Confidence 1111233467889999999998877641 1110 011244556666664421 1233333 35
Q ss_pred CCceeEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcC--CCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 404 DKKIVNITIDMKQFF---TITQHLV-----NRTILLSSKALMDANLTIK--DINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 404 ~g~~~~~~itr~~~e---~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
+|..+.+ --+.|+ .+++|.+ ..+.+++-.+++.+.++.. --++|+|.||++--|.+-+.|++.+
T Consensus 245 DGRvIkv--G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 245 DGRVIKV--GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred CCcEEEe--cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHH
Confidence 5654443 333343 4555533 2356667777777665422 1279999999999999988887664
No 131
>KOG0568|consensus
Probab=97.57 E-value=5.4e-05 Score=70.00 Aligned_cols=54 Identities=17% Similarity=0.404 Sum_probs=43.9
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH-HcCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS-ILKD 64 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~-~L~d 64 (634)
.||.+|||..+++.| +++.+|+.|++++|||.-.. ......|.+|.+||. +|+.
T Consensus 48 e~fril~v~e~~~ad--evr~af~~lakq~hpdsgs~------~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEGADAD--EVREAFHDLAKQVHPDSGSE------EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhcccccCchh--HHHHHHHHHHHHcCCCCCCc------cccHHHHHHHHHHHHHHHHH
Confidence 589999999976655 99999999999999997332 224578999999997 7753
No 132
>KOG1789|consensus
Probab=97.56 E-value=8.6e-05 Score=82.50 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=43.2
Q ss_pred CCccccCCCCC--CCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy8852 3 NYFDFFNLPKC--FNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILK 63 (634)
Q Consensus 3 ~~~~~l~~~~~--~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~ 63 (634)
+-|++|.++.+ ...+.+.||++|++|+.+|||||++. -.++|-.+|+||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--------GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--------GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--------HHHHHHHHHHHHHHHH
Confidence 45789988862 23456899999999999999999642 3468889999999998
No 133
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.54 E-value=0.00086 Score=70.52 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=56.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---ecchhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCe
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLAGLNVLRL---LNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGV 337 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~l---i~Ep~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~ 337 (634)
-++||==+--.+++++.+...+..||==++.- =.|+.=|+-..+... ......++=+|+||||+.+++++-++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 47788777777888888888888887311111 134444433222111 12567899999999999999987653
Q ss_pred EEEEEEcCCCCccchhH
Q psy8852 338 FKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 338 ~~v~~~~~~~~lGG~~i 354 (634)
++++.. .++||+-|
T Consensus 165 --v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 165 --VIDTAC-LDIGGRLI 178 (473)
T ss_pred --EEEEEE-EeeccEEE
Confidence 445444 77888765
No 134
>PRK15027 xylulokinase; Provisional
Probab=97.29 E-value=0.012 Score=64.60 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=61.5
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
.-++.+|-..+-+-+--....+-+.+++.+. .++.|+++||+++++.+.+.+.+.+|.++....+..++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467776654433333333333344555443 4789999999999999999999999999966666677889999999
Q ss_pred HhHhcCCCC
Q psy8852 491 ANFLSGNRG 499 (634)
Q Consensus 491 a~~~~~~~~ 499 (634)
|+.-.+..+
T Consensus 432 A~~~~G~~~ 440 (484)
T PRK15027 432 AQIAANPEK 440 (484)
T ss_pred HHHhcCCcC
Confidence 987665443
No 135
>KOG0680|consensus
Probab=97.19 E-value=0.02 Score=56.64 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=58.1
Q ss_pred CcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeecchhHHHHHhh---hccCc----cceEEEEEEeCCCeEEEEEE
Q psy8852 260 RIFGAVITVPAYFNDI-QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK---LDKNI----FEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~-qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~---~~~~~----~~~~vlV~D~GggT~dvsv~ 331 (634)
.-.++++|=|..--+. |.....-..+.-+++.+ ..-+.|+..++- .++.+ .....+|+|.|-+-|.+.=+
T Consensus 92 ~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~ 169 (400)
T KOG0680|consen 92 KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPV 169 (400)
T ss_pred CcceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehh
Confidence 3457999999654444 44444555666777653 333444433333 22221 35589999999997776533
Q ss_pred EEeCCeEEEEEEcCCCCccchhHHHHHHHHHH
Q psy8852 332 KFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363 (634)
Q Consensus 332 ~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 363 (634)
-.+. ....+... ..+||..+++.|.+++.
T Consensus 170 v~g~--~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 VKGI--PYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred hcCc--chhhceEE-eecchHHHHHHHHHHhh
Confidence 2221 11112222 67899999999988764
No 136
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.13 E-value=0.19 Score=50.57 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-----CCcCCCCChhhHHHHHHHHHH
Q psy8852 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-----TTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-----~~~~~~~~p~~ava~GAa~~a 491 (634)
.+++....+.+...+...+++...... .|+|+||....+.+++.+.+.+. .++..+..|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 345566666677777777776654322 29999999999888777755552 234567788899999999986
No 137
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.11 E-value=0.0097 Score=61.29 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=40.6
Q ss_pred CeEEEEcCCcCcHHHHHHHHhhcc-----CCcCCCCChhhHHHHHHHHHH
Q psy8852 447 NNVILVGGSTRMKHIHEGVSNFFK-----TTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 447 ~~ViLvGG~s~~p~v~~~l~~~f~-----~~~~~~~~p~~ava~GAa~~a 491 (634)
..|+|+||.++.+.+.+.|++.++ .+++.+.+|..+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 479999999999999999999994 567789999999999999975
No 138
>KOG0681|consensus
Probab=97.10 E-value=0.0092 Score=62.86 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=110.7
Q ss_pred CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
.+.+.|.||.|+..+.++|.....|.++ ++.+++--++ +..|..+. +.|.....
T Consensus 21 ~n~~piVIDNGS~~~RaGw~ge~eP~lv--------FrNvl~r~Rd--rk~~~s~t----------------~vgnd~~~ 74 (645)
T KOG0681|consen 21 SNTIPIVIDNGSYECRAGWAGEKEPRLV--------FRNVLTRPRD--RKLGASVT----------------LVGNDILN 74 (645)
T ss_pred cCCCcEEEeCCceeEeecccCCCCccch--------hhhhhccccc--cccccccc----------------cccchhhh
Confidence 4577899999999999999866555544 4555544332 22222211 11111111
Q ss_pred ccc---C-CCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-HH
Q psy8852 211 INT---N-SFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA-AK 285 (634)
Q Consensus 211 ~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a-a~ 285 (634)
.+. . +.||. +..++-.+++..+|.|+.....-.-..-...+++|=+..-....|+.|.+. .+
T Consensus 75 ~~~~Rs~~rSPFd-------------~nVvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE 141 (645)
T KOG0681|consen 75 FQGVRSSPRSPFD-------------RNVVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFE 141 (645)
T ss_pred hhhhhccCCCCCc-------------CCccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHH
Confidence 000 0 12332 235666778888888877654221111234588888866666788887775 55
Q ss_pred HcCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
.-|++.+.+=-... +++.++.. ..+...+|+++|..+|.|-.+--+... +....-.++||.....-|.+.+.-
T Consensus 142 ~YgvP~V~yGIDsl---fS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~i---l~~~kRiN~GG~qa~dYL~~Lmq~ 215 (645)
T KOG0681|consen 142 TYGVPKVAYGIDSL---FSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLI---LKDVKRINWGGYQAGDYLSRLMQL 215 (645)
T ss_pred HcCCcceeechhhH---HHHhhccCcccCcceEEEecCCCcceeEEEecCchh---hhcceeeccCcchHHHHHHHHHhc
Confidence 66988665433332 22222222 133467999999999887755433322 223334789999988877777777
Q ss_pred HHh
Q psy8852 365 NAF 367 (634)
Q Consensus 365 ~~~ 367 (634)
++.
T Consensus 216 Kyp 218 (645)
T KOG0681|consen 216 KYP 218 (645)
T ss_pred cCc
Confidence 654
No 139
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.00 E-value=0.2 Score=50.19 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCCCeEEEEcC-CcCcHHHHHHHHhhc---cCCcCCCCChhhHHHHHHHH
Q psy8852 444 KDINNVILVGG-STRMKHIHEGVSNFF---KTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 444 ~~i~~ViLvGG-~s~~p~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~ 489 (634)
..++.|+++|| .+..|.+++.+...+ +.+.+.+.|....+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35789999999 778999999998776 45677788999999999986
No 140
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.99 E-value=0.0027 Score=60.73 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
.++.|+++||.++++.+.+.+.+.||.++....+ .++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999998876555 78999999999863
No 141
>KOG0723|consensus
Probab=96.84 E-value=0.0021 Score=52.45 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=39.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCCh
Q psy8852 6 DFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDP 65 (634)
Q Consensus 6 ~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~ 65 (634)
.+|||.+ +++.+.||.++|+.....|||+-. ++ =..+.||||+..|...
T Consensus 60 lIL~v~~--s~~k~KikeaHrriM~~NHPD~GG--SP-------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTP--SLDKDKIKEAHRRIMLANHPDRGG--SP-------YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCc--cccHHHHHHHHHHHHHcCCCcCCC--CH-------HHHHHHHHHHHHHhcc
Confidence 4799997 577889999999999999999943 22 2345799999998653
No 142
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=96.71 E-value=0.0019 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhhc
Q psy8852 88 FSHDFLEQQMKWRETLSIIKNK 109 (634)
Q Consensus 88 ~~~~~l~~~~e~~e~~~~~~~~ 109 (634)
.||+|||++|||||+|+++.+.
T Consensus 2 ~d~eFLme~mE~rE~le~~~~~ 23 (78)
T PF07743_consen 2 MDPEFLMEQMELREELEEAQNS 23 (78)
T ss_dssp S-HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999999654
No 143
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.66 E-value=0.1 Score=57.30 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+..+-+..|+++ .+|+-.+-|.+.| +..... ..+..+|+|+|||+|.+++++-. .+ . ...+.++|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~--~~--~-~~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA--QA--T-SLFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC--ce--e-eeeEEeccchH
Confidence 4455666777789987 5666555555544 333321 23458999999999999987532 22 1 12347888888
Q ss_pred HHHHHH
Q psy8852 354 FDYCLF 359 (634)
Q Consensus 354 id~~l~ 359 (634)
+.+.+.
T Consensus 167 l~e~f~ 172 (496)
T PRK11031 167 WLERYF 172 (496)
T ss_pred HHHHhc
Confidence 777664
No 144
>PRK10854 exopolyphosphatase; Provisional
Probab=96.64 E-value=0.13 Score=56.77 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+..+-+..|++. .+++..+-|.+.| +..... ..+..+|+|+|||+|.+++++-.. ..... ..++|.-.
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~--~~~~~---S~~lG~vr 171 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFE--PILVE---SRRMGCVS 171 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCC--eeEeE---EEecceee
Confidence 3345566666779887 5666665555554 433321 235689999999999999876432 21111 24788888
Q ss_pred HHHHHH
Q psy8852 354 FDYCLF 359 (634)
Q Consensus 354 id~~l~ 359 (634)
+.+.+.
T Consensus 172 l~e~f~ 177 (513)
T PRK10854 172 FAQLYF 177 (513)
T ss_pred HHhhhC
Confidence 777654
No 145
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.49 E-value=0.054 Score=57.86 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=118.7
Q ss_pred HHHHHHHHHcCCce----eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeC---C----eEEEEEEcCC
Q psy8852 278 QFTKNAAKLAGLNV----LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKN---G----VFKVLSVGGD 346 (634)
Q Consensus 278 ~~l~~aa~~aGl~~----~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~---~----~~~v~~~~~~ 346 (634)
..+.++|+..||.. ..-+-+.-|.++..+... ..-|++=+|-+|+++.+-+-.. | ....+--..-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~ 307 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLW 307 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC----CCeEEEEeccceEEEEecCCceecCccccccccccCcchh
Confidence 34566777777752 112222333333222111 2335555788888887654321 1 1111111112
Q ss_pred CCccchhHHHHHHHHHHHHHhhcc------------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCC---------
Q psy8852 347 SNLGGDDFDYCLFSWIVKNAFLKK------------LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDK--------- 405 (634)
Q Consensus 347 ~~lGG~~id~~l~~~l~~~~~~~~------------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g--------- 405 (634)
..=||..-.-.+++|+.+...... ........+..-+++.+...+....- +-++-+.|
T Consensus 308 ~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~ 386 (544)
T COG1069 308 LYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPR 386 (544)
T ss_pred hhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCcc
Confidence 334788888888999888752111 11122334444445555444332221 11221111
Q ss_pred -----ceeEEEEeHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCC
Q psy8852 406 -----KIVNITIDMKQFFTITQHLVNRT---ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI 477 (634)
Q Consensus 406 -----~~~~~~itr~~~e~~~~~~~~~~---~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~ 477 (634)
..+++.-+.+.+-.+....+..+ ...|-+++++.|+. |+.|+..||..+.|.+.+.+.+..|.++..+
T Consensus 387 l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~i~- 462 (544)
T COG1069 387 LKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVVIP- 462 (544)
T ss_pred ceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCCeEEee-
Confidence 12233334444445544444444 34445556666654 8999999999999999999999999988765
Q ss_pred ChhhHHHHHHHHHHhHhcCCCC
Q psy8852 478 DPDKAVVFGAAIQANFLSGNRG 499 (634)
Q Consensus 478 ~p~~ava~GAa~~a~~~~~~~~ 499 (634)
..+++++.|+|+.++.-.+.++
T Consensus 463 ~s~~a~llGsAm~~avAag~~~ 484 (544)
T COG1069 463 ASDQAVLLGAAMFAAVAAGVHP 484 (544)
T ss_pred cccchhhhHHHHHHHHHhccCc
Confidence 5568999999999987666554
No 146
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.39 E-value=0.012 Score=65.60 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=62.9
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
.-+|.++..++..+++.+.-.++..++...-....++.|.++||+++++.+.+.+.+.+|.++....++ ++.++|||+.
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHH
Confidence 445666666666666666555554444332111247899999999999999999999999999776555 5789999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+.+
T Consensus 488 A~~~~G~~ 495 (541)
T TIGR01315 488 GAKAAGTT 495 (541)
T ss_pred HHHhcCcc
Confidence 98665543
No 147
>PLN02669 xylulokinase
Probab=96.20 E-value=0.015 Score=64.80 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=53.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
+|.++ +..+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.||.++.....+ ++.|+|||+.|+
T Consensus 417 ~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~ 491 (556)
T PLN02669 417 DPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAA 491 (556)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHH
Confidence 45444 3333444333333333333322 357899999999999999999999999988766555 678999999997
Q ss_pred H
Q psy8852 493 F 493 (634)
Q Consensus 493 ~ 493 (634)
.
T Consensus 492 ~ 492 (556)
T PLN02669 492 H 492 (556)
T ss_pred H
Confidence 5
No 148
>KOG0431|consensus
Probab=96.18 E-value=0.0067 Score=64.93 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCC--hhhHHHHHHHHHHHHHHHHHcCC
Q psy8852 16 IDMDLLDKIYYNFQKKIHPDNFIQKS--KIDQDASVKLSTYLNKAYSILKD 64 (634)
Q Consensus 16 ~~~~~i~~~y~~~~~~~HPD~~~~~~--~~~~~~~~~~~~~i~~Ay~~L~d 64 (634)
++.+++|++||+..+.+||||.++.+ ...+-.+++.|..+++||+-..-
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~ 450 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ 450 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57889999999999999999998873 34456788899999999986543
No 149
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.09 E-value=0.036 Score=55.03 Aligned_cols=87 Identities=20% Similarity=0.107 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceee---eecchhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCe
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLAGLNVLR---LLNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGV 337 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~---li~Ep~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~ 337 (634)
.++||=-..-..++|..+......||==++. --.|+.-|.-..+... .+....++=+|+||||+..|++..++
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 4666665555666666666665566521111 1123333322221111 12556788899999999999987654
Q ss_pred EEEEEEcCCCCccchhH
Q psy8852 338 FKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 338 ~~v~~~~~~~~lGG~~i 354 (634)
+..+.. ..+||+-+
T Consensus 167 --v~dTaC-LdiGGRLi 180 (473)
T COG4819 167 --VSDTAC-LDIGGRLI 180 (473)
T ss_pred --ccccee-eecCcEEE
Confidence 233332 56777654
No 150
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.05 E-value=0.026 Score=62.87 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=59.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-cCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGS-TRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.+|-..+-+-+--....+-+.|++.+. .++.|+++||+ ++++.+.+.+.+.||.++....++ ++.|.|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 3456666544443333233333444454443 47899999999 999999999999999998766554 688999999
Q ss_pred HHhHhcCCC
Q psy8852 490 QANFLSGNR 498 (634)
Q Consensus 490 ~a~~~~~~~ 498 (634)
.|+.-.+..
T Consensus 480 lA~~~~G~~ 488 (536)
T TIGR01234 480 FAAVAAGVY 488 (536)
T ss_pred HHHHHcCCc
Confidence 998766543
No 151
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.02 E-value=0.027 Score=61.55 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=58.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
.-++.+|-..+-+-+.-....+.+.+++.+. ..++.|.++||+++++.+.+.+.+.||.++....++ ++.++|||+.
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~ 437 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMF 437 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHH
Confidence 3456665544333333233333344444321 247899999999999999999999999999765554 6789999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+..
T Consensus 438 a~~a~G~~ 445 (465)
T TIGR02628 438 GFYGVGEY 445 (465)
T ss_pred HHHhcCcc
Confidence 98665543
No 152
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.82 E-value=0.037 Score=61.02 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=57.3
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHH
Q psy8852 411 TIDMKQFFTIT-QHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 411 ~itr~~~e~~~-~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa 488 (634)
.-++.++...+ +.+.-.+...+ +.|++. +. .++.|.++||+++++.+.+++.+.||.++....+ .++.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~-~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV-TETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEecCC-CcchHHHHH
Confidence 33566555433 33333333333 333332 33 4789999999999999999999999999976444 468899999
Q ss_pred HHHhHhcCCC
Q psy8852 489 IQANFLSGNR 498 (634)
Q Consensus 489 ~~a~~~~~~~ 498 (634)
+.|+.-.+.+
T Consensus 442 ~~a~~~~G~~ 451 (493)
T TIGR01311 442 YAAGLAVGYW 451 (493)
T ss_pred HHHHhhcCcC
Confidence 9998666543
No 153
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.80 E-value=0.042 Score=59.89 Aligned_cols=84 Identities=8% Similarity=0.024 Sum_probs=58.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.++-+.+-+-+--....+-+.|++. +. .++.|.++||+++++.+.+.+.+.+|.++... . .++.|+|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 33666665444333332333333444442 33 47899999999999999999999999999643 3 5788999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.+..+
T Consensus 430 ~a~~~~G~~~ 439 (454)
T TIGR02627 430 VQLMALDEIN 439 (454)
T ss_pred HHHHhcCCcC
Confidence 9987665443
No 154
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.72 E-value=0.031 Score=61.66 Aligned_cols=82 Identities=11% Similarity=0.174 Sum_probs=56.5
Q ss_pred EeHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 412 IDMKQFFT-ITQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 412 itr~~~e~-~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
-+|.++-. +++.+.-.+...+ +.+++ .+. .++.|.++||+++++.+.+.+.+.||.++....+ .++.++|||+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~-e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~a~GaA~ 446 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVL-DAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERPVV-AETTALGAAY 446 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEecCc-ccchHHHHHH
Confidence 34555543 3333333334443 33332 343 4789999999999999999999999999976554 4688999999
Q ss_pred HHhHhcCCC
Q psy8852 490 QANFLSGNR 498 (634)
Q Consensus 490 ~a~~~~~~~ 498 (634)
.|+.-.|..
T Consensus 447 ~A~~~~G~~ 455 (498)
T PRK00047 447 LAGLAVGFW 455 (498)
T ss_pred HHhhhcCcC
Confidence 998766543
No 155
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.69 E-value=0.049 Score=59.88 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCC
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNR 498 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~ 498 (634)
.++.|+++||+++++.+.+.+.+.||.++.... ..++.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999887654 55688999999998766543
No 156
>PLN02295 glycerol kinase
Probab=95.69 E-value=0.048 Score=60.43 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCC
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNR 498 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~ 498 (634)
.++.|.++||+++++.+.+.+.+.||.++..... .++.|+|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD-IETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEecCc-cccHHHHHHHHHHhhcCcC
Confidence 4788999999999999999999999999976444 4788999999997665543
No 157
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.66 E-value=0.054 Score=59.27 Aligned_cols=82 Identities=7% Similarity=-0.006 Sum_probs=56.4
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
+|.+|-..+-+-+--....+.+.|++. +. .++.|.++||+++++.+.+.+.+.+|.++.... .++.+.|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 555555444333332233333344432 32 478999999999999999999999999996543 378899999999
Q ss_pred hHhcCCCC
Q psy8852 492 NFLSGNRG 499 (634)
Q Consensus 492 ~~~~~~~~ 499 (634)
..-.+..+
T Consensus 420 ~~a~G~~~ 427 (471)
T PRK10640 420 LMTLDELN 427 (471)
T ss_pred HHHcCCcC
Confidence 87666443
No 158
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.60 E-value=0.036 Score=61.23 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=56.0
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 413 DMKQFFTI-TQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 413 tr~~~e~~-~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
++.++-.. ++.+.-.+...+ +.+++ .+. .++.|.++||+++++.+.+.+.+.||.++....+ .++.++|||+.
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~-~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVI-ESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEM-AETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecCc-ccchHHHHHHH
Confidence 55555432 233333333333 33333 243 3789999999999999999999999999976554 45789999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+.+
T Consensus 451 aa~a~G~~ 458 (504)
T PTZ00294 451 AGLAVGVW 458 (504)
T ss_pred HHhhcCcc
Confidence 98766543
No 159
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.60 E-value=0.05 Score=60.20 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=58.2
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.+|-. +++.+.-.+...+....+..+. .++.|.++||+++++.+.+.+.+.||.++....++ ++.+.|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 4555543 3334444444444444343343 47899999999999999999999999999765555 68899999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 447 ~~~~G~~ 453 (505)
T TIGR01314 447 LKALGLI 453 (505)
T ss_pred HHhcCcc
Confidence 8766543
No 160
>PRK04123 ribulokinase; Provisional
Probab=95.60 E-value=0.031 Score=62.50 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=44.8
Q ss_pred CCCeEEEEcCC-cCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCC
Q psy8852 445 DINNVILVGGS-TRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNR 498 (634)
Q Consensus 445 ~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~ 498 (634)
.++.|.++||+ ++++.+.+.+.+.||.++.... +.++.++|||+.|+.-.+..
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G~~ 491 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAGAY 491 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhccC
Confidence 47899999999 9999999999999999986544 45788999999998665543
No 161
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.55 E-value=0.052 Score=60.24 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=56.5
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
+|.++-..+-+-+--....+-+.+++ .+. .++.|.++||+++++.+.+.+.+.+|.++....++ ++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHH
Confidence 55555543333222222233333443 243 47899999999999999999999999999766655 57799999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 455 ~~~~G~~ 461 (520)
T PRK10939 455 GVGAGIY 461 (520)
T ss_pred HHHhCCC
Confidence 8665543
No 162
>KOG2517|consensus
Probab=95.43 E-value=0.055 Score=58.08 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCC
Q psy8852 444 KDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 444 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 46888999999999999999999999999999888876 999999999887765
No 163
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.26 E-value=0.25 Score=46.74 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHH
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~ 304 (634)
....+.+.++++.+|++...++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 4566889999999999999999999998754
No 164
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.17 E-value=0.22 Score=50.95 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCceeeeecchhHHHHHhh-hccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHH
Q psy8852 277 RQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355 (634)
Q Consensus 277 r~~l~~aa~~aGl~~~~li~Ep~AAa~~y~-~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 355 (634)
...+...-+..|++. .+++..+-|.+.|. ..........+++|+|||+|.++.++-.+ + . .....++|...+.
T Consensus 88 ~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~--~--~-~~~Sl~lG~vrl~ 161 (300)
T TIGR03706 88 PEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFE--P--G-EGVSLPLGCVRLT 161 (300)
T ss_pred HHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCC--E--e-EEEEEccceEEhH
Confidence 344445555679877 57777777777663 22221222349999999999999875332 1 1 2234678887777
Q ss_pred HHHH
Q psy8852 356 YCLF 359 (634)
Q Consensus 356 ~~l~ 359 (634)
+.+.
T Consensus 162 e~f~ 165 (300)
T TIGR03706 162 EQFF 165 (300)
T ss_pred HhhC
Confidence 6653
No 165
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.14 E-value=0.05 Score=47.32 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=25.8
Q ss_pred EEEEEeCCCeEEEEEEEEe-CCeEEEEEEcCCCCcc--chhHH--HHHHH
Q psy8852 316 FAVYDLGGGTFDISILKFK-NGVFKVLSVGGDSNLG--GDDFD--YCLFS 360 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lG--G~~id--~~l~~ 360 (634)
++++|+|++++.+++.+.. .+.+.++.......-| |..+. +.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~ 50 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISK 50 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHH
Confidence 5799999999999999873 3444454433211111 66666 66654
No 166
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.5 Score=51.32 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCC---HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCc-cceEE
Q psy8852 241 ISAQIFITLKKIAENAVNNRIFGAVITVPAYFN---DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIF 316 (634)
Q Consensus 241 v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~---~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~-~~~~v 316 (634)
.+...+..|+..++...+..+.++.+ |=+... .+.-+.+..+-+..|++.-.+--|-+|--.+++.-..- .....
T Consensus 53 ai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~ 131 (492)
T COG0248 53 AIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDG 131 (492)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCE
Confidence 34444555555555444445555322 221111 12336678888888998754445555544444443332 26788
Q ss_pred EEEEeCCCeEEEEEEE
Q psy8852 317 AVYDLGGGTFDISILK 332 (634)
Q Consensus 317 lV~D~GggT~dvsv~~ 332 (634)
+|+|+|||+|.+++..
T Consensus 132 lv~DIGGGStEl~~g~ 147 (492)
T COG0248 132 LVIDIGGGSTELVLGD 147 (492)
T ss_pred EEEEecCCeEEEEEec
Confidence 9999999999999886
No 167
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.70 E-value=6 Score=40.70 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=29.1
Q ss_pred HcCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCCeEEEEEE
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~GggT~dvsv~ 331 (634)
..|++ +.+.++..|+|++-.... ....++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 34765 579999999998654332 2234678888888774 44444
No 168
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=94.39 E-value=1.1 Score=43.99 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred cCCCCeEEEEcCCcCcHHHHHHHHhhcc----CCcCCCCChhhHHHHHHHHH
Q psy8852 443 IKDINNVILVGGSTRMKHIHEGVSNFFK----TTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 443 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~~~~~~p~~ava~GAa~~ 490 (634)
+.++|.|+|+||.++...+-++|.+... .-++-..|-.+|-|.|+..-
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRV 345 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRV 345 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHH
Confidence 4679999999999999999999987763 23444566778999998643
No 169
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.036 Score=51.69 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC--hhhHHHHHHHHHHHHHHHHHc
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKS--KIDQDASVKLSTYLNKAYSIL 62 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~--~~~~~~~~~~~~~i~~Ay~~L 62 (634)
+.|.+||++.+ .+..+|+++|+++....|||+..... .+--+.+.++.+++++||+..
T Consensus 114 ~~l~~l~~~~~--~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 114 DALKVLGVEIK--ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hHHHHhcCchh--hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999985 55779999999999999999986554 444556778899999999754
No 170
>KOG2531|consensus
Probab=94.13 E-value=0.16 Score=52.85 Aligned_cols=56 Identities=16% Similarity=0.349 Sum_probs=47.2
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+..+........|++|||.|+...|-+.|.+.||.++..- +..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 4455666678999999999999999999999999998764 6667889999999764
No 171
>PF13941 MutL: MutL protein
Probab=94.02 E-value=0.46 Score=50.92 Aligned_cols=44 Identities=23% Similarity=0.451 Sum_probs=31.4
Q ss_pred EEEEEeCCceEEEEEEE--CCeeEEEecCCCCccccEEEEEecCCcEEecHhH
Q psy8852 135 SIGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKA 185 (634)
Q Consensus 135 vvGID~GTt~s~va~~~--~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A 185 (634)
++.+|||+|+|++..++ .+..+++. ....||.| .+ +.+..|...
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv--~~-~Dv~~G~~~ 47 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV--EP-GDVTIGLNN 47 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc--Cc-ccHHHHHHH
Confidence 58899999999999999 78877774 33567766 22 235555543
No 172
>PRK09604 UGMP family protein; Validated
Probab=93.49 E-value=11 Score=39.18 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHHHHHHHhHhcC
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFGAAIQANFLSG 496 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~~a~~~~~ 496 (634)
+.+.++.+++.. +++.|+|.||.+...++++.|.+.+ |.+++.+. -.|.+++.|++=+-....+
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 344555555543 4678999999999999999999988 55554433 3467888888855544443
No 173
>PRK09698 D-allose kinase; Provisional
Probab=92.61 E-value=13 Score=37.83 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=25.2
Q ss_pred cCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCC
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 324 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Ggg 324 (634)
.|++ +.+.++..|+|++-.........+++.+.+|.|
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 4775 578999999888644332223457888888876
No 174
>PRK09557 fructokinase; Reviewed
Probab=92.59 E-value=13 Score=37.82 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.9
Q ss_pred cCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCC
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGG 324 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~Ggg 324 (634)
.|++ +.+.++..|+|++-.... ....++++.+.+|.|
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 4775 578999999998754422 224466777778755
No 175
>KOG0681|consensus
Probab=92.47 E-value=0.12 Score=54.76 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCcCC--CCeEEEEcCCcCcHHHHHHHHhhc------cC--CcCCCCChhhHHHHHHHHHHhH
Q psy8852 428 TILLSSKALMDANLTIKD--INNVILVGGSTRMKHIHEGVSNFF------KT--TLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f------~~--~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+.+++...|.+...+... +..|+|+||+|.+|++.+.|...+ |. .|....||...+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 344444455444322222 789999999999999999998776 32 4567889999999999999875
No 176
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=91.77 E-value=13 Score=42.44 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.5
Q ss_pred CCceEEEEEeCCceEEEEEEE
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~ 151 (634)
.+.+++|||+|.|++++++++
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCEEEEEcCchhheeeeec
Confidence 456799999999999999986
No 177
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=91.15 E-value=0.082 Score=45.99 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC---Cceee---------eecch-hHHHHH
Q psy8852 241 ISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG---LNVLR---------LLNEP-TSAAIA 304 (634)
Q Consensus 241 v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aG---l~~~~---------li~Ep-~AAa~~ 304 (634)
-++..|+...+.|++..+.++..+.+++ .....+.+.++++.++ ++.-. ++.+| .|+|++
T Consensus 47 ~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 47 DISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3445555556666665555566666655 4445566777777776 66656 78888 888764
No 178
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=90.95 E-value=0.47 Score=40.42 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChh
Q psy8852 17 DMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 66 (634)
Q Consensus 17 ~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~ 66 (634)
...+++.+.|.+-+++|||.|++.+. ++...++-.+.+|.-.+.|+.+.
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~-~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQHPE-EKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhHHHHHHHHHHHHHhCCcccccChH-HHHhhHHHHHHHHHHHHHHhccC
Confidence 35689999999999999999998665 66666666777777777777654
No 179
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.36 E-value=0.5 Score=47.94 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHH
Q psy8852 278 QFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355 (634)
Q Consensus 278 ~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 355 (634)
..+...-+..|++. .+++..+-|.+.| +....- .....+|+|+|||+|.+++++- +.+ .. ..+.++|.-.+.
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~--~~-~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKV--VF-SQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEE--EE-EEEES--HHHHH
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--Cee--eE-eeeeehHHHHHH
Confidence 34555566679887 4555555555544 332221 4567899999999999997754 222 11 223678887776
Q ss_pred HHH
Q psy8852 356 YCL 358 (634)
Q Consensus 356 ~~l 358 (634)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 180
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=90.06 E-value=1.1 Score=47.44 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=57.4
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHH
Q psy8852 412 IDMKQFFTITQHLVNRTILLSSKAL----MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGA 487 (634)
Q Consensus 412 itr~~~e~~~~~~~~~~~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GA 487 (634)
.+++++. +..++.+.-..++++ ++++. ++..+-+=||.++..++.+...+.+|.+|.++.+. |..|+||
T Consensus 371 t~~~hi~---RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlGa 443 (499)
T COG0554 371 TTKAHIA---RATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALGA 443 (499)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHHH
Confidence 3455554 344444433333333 34443 57888888999999999999999999999876654 7789999
Q ss_pred HHHHhHhcCCCC
Q psy8852 488 AIQANFLSGNRG 499 (634)
Q Consensus 488 a~~a~~~~~~~~ 499 (634)
|+.|..-.+..+
T Consensus 444 A~lAGla~G~w~ 455 (499)
T COG0554 444 AYLAGLAVGFWK 455 (499)
T ss_pred HHHHhhhhCcCC
Confidence 999987666443
No 181
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.01 E-value=2.7 Score=43.87 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC----CCChhhHHHHHHHHHHhHh
Q psy8852 427 RTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT----SIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 427 ~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~----~~~p~~ava~GAa~~a~~~ 494 (634)
-+...|.+.++... ...+.|+++||+++.|.+.+.|++.++.++.. ..+++.-=|..-|++|...
T Consensus 271 ~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 271 LTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 33444445554432 22568999999999999999999999744432 2455544455566666543
No 182
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.78 E-value=4.8 Score=39.10 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeecchhHHHHHhhhcc---CccceEEEEEEe
Q psy8852 246 FITLKKIAENAVNNRIFGAVITVPAYFNDI-QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK---NIFEGIFAVYDL 321 (634)
Q Consensus 246 L~~l~~~a~~~~~~~~~~~viTVPa~~~~~-qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~---~~~~~~vlV~D~ 321 (634)
..+|++.+++.++.++ .++++-..|... .....++.| ||-+.+..+ ....+..+++|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vA----------------AaNW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVA----------------AANWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHH----------------HhhhHHHHHHHHHhcCCceEEEec
Confidence 4566777777776654 788888877663 222233322 222111111 114567899999
Q ss_pred CCCeEEEEEEE
Q psy8852 322 GGGTFDISILK 332 (634)
Q Consensus 322 GggT~dvsv~~ 332 (634)
|+.|+|+-=+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987554
No 183
>PRK03011 butyrate kinase; Provisional
Probab=89.66 E-value=5.4 Score=41.79 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcc----CCcCCCCChhhHHHHHHHHH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFK----TTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~~~~~~p~~ava~GAa~~ 490 (634)
++|.|+|.||.+..+.+.+.|++.+. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999999998887763 34445566678999998765
No 184
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=89.63 E-value=12 Score=37.55 Aligned_cols=175 Identities=16% Similarity=0.192 Sum_probs=92.5
Q ss_pred ecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEE-----EEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 295 LNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-----VLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 295 i~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~-----v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
+..|+=..++|.......-.+++|.|+-+-|+.+.|- ++.+. .+...| .++ -.+|-.++..+-..-
T Consensus 129 ~aSpEKi~iay~a~~~~~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG--~lh-GpLDlE~ir~Id~g~--- 199 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLTGFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPG--VLH-GPLDLEAIRNIDAGK--- 199 (326)
T ss_pred cCCHHHHHHHHHHHHHcCCCCEEEEecCCCeEEEEEE---CCEEEccccccccCcc--ccc-CcccHHHHHhcccCc---
Confidence 3566666666655443123678999999999887753 33220 111111 122 344555543222100
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCc
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQH------LVNRTILLSSKALMDANLTI 443 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~------~~~~~~~~i~~~l~~~~~~~ 443 (634)
-.+-+.||...-..+. .... ....+++||.+.+.. -++.+...+-..+...-...
T Consensus 200 --------------~tan~aFs~aGa~kIa-~~~~----~~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~ 260 (326)
T TIGR03281 200 --------------KTANEAFSHAGAVKIA-CADK----GVENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLD 260 (326)
T ss_pred --------------ccHHHHHhhcCeeEEe-cccc----cccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheecc
Confidence 0122233333332222 1111 124567777665522 22222222222222111111
Q ss_pred CCCCeEEEEcC--CcCcH-HHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCC
Q psy8852 444 KDINNVILVGG--STRMK-HIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRG 499 (634)
Q Consensus 444 ~~i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~ 499 (634)
.....|+|.|- +++.| .+++.|++.+..++.. ... +..|.|+|+.|.-+.+..+
T Consensus 261 ~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gGk~ 317 (326)
T TIGR03281 261 CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSGKR 317 (326)
T ss_pred CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCCcc
Confidence 23458999997 99999 9999999999866643 333 6779999999988776654
No 185
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=89.38 E-value=14 Score=36.36 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcC
Q psy8852 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTR 457 (634)
Q Consensus 414 r~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 457 (634)
++..+.+...++.....+|+..+++.......-..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45667777777777777777777665422223468999999876
No 186
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=88.85 E-value=0.42 Score=49.82 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccC-CcCC----CCChhhHHHHHHHHHHhHh
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLT----SIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~~----~~~p~~ava~GAa~~a~~~ 494 (634)
++.-+..-+...|.+.++.... +++.|+++||+++.|.+.+.|++.++. ++.. ..+|+.-=|.+-|++|...
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3333444444555555555432 378999999999999999999999965 3321 2334433344555666544
No 187
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.79 E-value=7.3 Score=39.97 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhccC----CcCCCCCh----hhHHHHHHHHHHhHhcCC
Q psy8852 444 KDINNVILVGGSTRMKHIHEGVSNFFKT----TLLTSIDP----DKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 444 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~----~~~~~~~p----~~ava~GAa~~a~~~~~~ 497 (634)
.+.+.|+|.|-.+++|-+.+.+++.|+. ++. ...+ ....|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 3678999999999999988887777732 332 1222 234799999999877664
No 188
>PLN02666 5-oxoprolinase
Probab=88.57 E-value=10 Score=46.42 Aligned_cols=76 Identities=5% Similarity=0.010 Sum_probs=48.8
Q ss_pred EeHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC-cCCCCChhhHHHHHHHH
Q psy8852 412 IDMKQFFTITQHLVNR-TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 412 itr~~~e~~~~~~~~~-~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~~~~~~p~~ava~GAa~ 489 (634)
++-++...-+..+++. ..+.|+......|.++.+. .++..||. =|..--.|.+.+|.+ ++.+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 3445555444444433 4455555555556554332 34444544 468888999999987 77888999999999986
Q ss_pred H
Q psy8852 490 Q 490 (634)
Q Consensus 490 ~ 490 (634)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
No 189
>PRK14878 UGMP family protein; Provisional
Probab=87.17 E-value=32 Score=35.55 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCC
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLT 475 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~ 475 (634)
+.+.++++++.. .++.|+|+||.+...++++.+.+.+ |.+++.
T Consensus 229 l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~ 274 (323)
T PRK14878 229 LVEVTERALAHT-----GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYV 274 (323)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEC
Confidence 334444444443 3678999999999999999999977 555544
No 190
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=86.74 E-value=8.7 Score=40.42 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHhhhcCCCCCcccCCCceEEEEEeCCceEEEEEEE
Q psy8852 116 MALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 116 ~~~~~~~~p~~~~~p~~~~vvGID~GTt~s~va~~~ 151 (634)
|.++-+..+..+ +..+.++.||||.|+.++|.+.
T Consensus 60 MIP~~v~~~p~g--~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 60 MIPTWVAPLPTG--NESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred cccccccCCCCC--CCCCCEEEEecCCceEEEEEEE
Confidence 444444444322 3567899999999999999987
No 191
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=86.52 E-value=40 Score=34.30 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHcCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCC
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGG 324 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~Ggg 324 (634)
+..|++ +.+.++..|+|++-.... .....+++.+.+|.|
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 334775 578999999998744322 223467888888866
No 192
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=86.14 E-value=0.63 Score=47.33 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC-cCCCCChhhHHHHHHHHH
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~~~~~~p~~ava~GAa~~ 490 (634)
+++-....+.+.|+......+....+. .++.+||.+ |.+-..+.+.+|.+ ++.+..+.-+.|.||++.
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 333344455555555544445443322 345556665 68888999999875 445566788899999864
No 193
>KOG1385|consensus
Probab=82.69 E-value=3.1 Score=43.27 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=84.3
Q ss_pred cCCCceEEEEEeCCceEEEEEEE-CCe----eEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhh
Q psy8852 129 VKNKCVSIGIDFGTTNSLVAIVR-NNI----PEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRF 203 (634)
Q Consensus 129 ~p~~~~vvGID~GTt~s~va~~~-~g~----~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~ 203 (634)
.+...+.+-||=|+|.|++-++. +.. +-.+..+-=...-|-.-+ ...+|......++.+
T Consensus 63 ~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSs----------------faddp~~aA~Sl~~L 126 (453)
T KOG1385|consen 63 SIKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSS----------------FADDPEEAANSLRPL 126 (453)
T ss_pred CCceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccc----------------cCCChHHHHHhHHHH
Confidence 34578999999999999998887 222 111110000011111122 223455556667777
Q ss_pred cCCCCCCcccC---CCCeEEecCCCceEEE-ecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q psy8852 204 IARDLKNINTN---SFPYDFQNKFGMLHIK-TISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQF 279 (634)
Q Consensus 204 lg~~~~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~ 279 (634)
|......++.. +.|.. +. ..+-..-|.+-...+|..+++..+......+..-.++|=
T Consensus 127 Ld~A~~~vP~~~~~kTPi~---------lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm---------- 187 (453)
T KOG1385|consen 127 LDVAEAFVPREHWKKTPIV---------LKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIM---------- 187 (453)
T ss_pred HHHHHhhCCHhHhccCceE---------EEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeec----------
Confidence 76665554433 22322 22 223367788888899999998877433222222112221
Q ss_pred HHHHHHHcCCceeeeecchhHHH--HHhhhccCc--cceEEEEEEeCCCeEEEEEEE
Q psy8852 280 TKNAAKLAGLNVLRLLNEPTSAA--IAYKLDKNI--FEGIFAVYDLGGGTFDISILK 332 (634)
Q Consensus 280 l~~aa~~aGl~~~~li~Ep~AAa--~~y~~~~~~--~~~~vlV~D~GggT~dvsv~~ 332 (634)
.=.+|-.-|. +.|....-. ....+.|+|+|||+|.++..-
T Consensus 188 -------------~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 188 -------------DGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -------------cCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 1112222222 223333211 256899999999999999754
No 194
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=82.32 E-value=64 Score=33.18 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHHHHH
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFGAAI 489 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~ 489 (634)
+.+.++.+++.. .++.|+|.||.+...++++.|.+.+ +.+++.+. -.|.+++.|++=
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 345555555543 4678999999999999999999887 55554432 346777777764
No 195
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=81.99 E-value=1.6 Score=43.15 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred eEEEEEeCCceEEEEEEE-CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~ 154 (634)
+++|||+|||++++++++ +|+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~ 22 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK 22 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC
T ss_pred CEEEEEEcccceEEEEEeCCCC
Confidence 589999999999999998 555
No 196
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=81.83 E-value=45 Score=35.05 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=56.6
Q ss_pred EEEeHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCcCCCCe-EEEEcCCcCcHHHHHHHHhhccC-CcCCC-CChhhHHHH
Q psy8852 410 ITIDMKQFFTITQHLVNRT-ILLSSKALMDANLTIKDINN-VILVGGSTRMKHIHEGVSNFFKT-TLLTS-IDPDKAVVF 485 (634)
Q Consensus 410 ~~itr~~~e~~~~~~~~~~-~~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~-~~~~~-~~p~~ava~ 485 (634)
..-.+.++...++..++++ ...++..+++.+ ++. +.|.||.+..-..-..|.+..+. ++..+ .--|..+|.
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 4567788888888877765 566677777766 345 99999999888888888887554 35443 344678999
Q ss_pred HHHHHHhHhcC
Q psy8852 486 GAAIQANFLSG 496 (634)
Q Consensus 486 GAa~~a~~~~~ 496 (634)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986543
No 197
>PRK00976 hypothetical protein; Provisional
Probab=81.64 E-value=11 Score=38.49 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCcCcH--HHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCC
Q psy8852 445 DINNVILVGGSTRMK--HIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRG 499 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p--~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~ 499 (634)
+++.|+|-||.++.+ .+.+.+++.+...+ ..-...+.++|||+.|..+.+..+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~G~~ 317 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFNGKK 317 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhCCCc
Confidence 478899999999998 78888888875432 222347889999999987765543
No 198
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.53 E-value=2.4 Score=48.07 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=29.8
Q ss_pred eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEE
Q psy8852 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKF 333 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~ 333 (634)
..+.+=|.|..+...+......++++++|+||.|||++++.-
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIID 297 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeec
Confidence 446677777777655542222226999999999999998873
No 199
>PRK00292 glk glucokinase; Provisional
Probab=79.22 E-value=80 Score=32.37 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=28.6
Q ss_pred HHHHcCCceeeeecchhHHHHHhhh---------ccCc--cceEEEEEEeCCC
Q psy8852 283 AAKLAGLNVLRLLNEPTSAAIAYKL---------DKNI--FEGIFAVYDLGGG 324 (634)
Q Consensus 283 aa~~aGl~~~~li~Ep~AAa~~y~~---------~~~~--~~~~vlV~D~Ggg 324 (634)
..+..|++.+.+.++-.|+|++-.. .... ..++++++-+|.|
T Consensus 86 l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG 138 (316)
T PRK00292 86 MKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG 138 (316)
T ss_pred HHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc
Confidence 3344588778999999999997543 1111 1367888888876
No 200
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=76.73 E-value=1.3e+02 Score=33.49 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHHHHHHHhHhc
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~~a~~~~ 495 (634)
+.+.+..+++.. .++.|+|+||.+...++++.|.+.+ +.+++.+. -.|.+++.|++.+.....
T Consensus 233 l~~~~~~~~~~~-----g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 233 LTEVTERALAHT-----GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 344444554443 3668999999999999999999665 44554433 346788888887654443
No 201
>PLN02920 pantothenate kinase 1
Probab=75.67 E-value=13 Score=38.93 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCcCcH-HHHHHHHh---hc---cCCcCCCCChhhHHHHHHHHHH
Q psy8852 444 KDINNVILVGGSTRMK-HIHEGVSN---FF---KTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 444 ~~i~~ViLvGG~s~~p-~v~~~l~~---~f---~~~~~~~~~p~~ava~GAa~~a 491 (634)
.+++.|+++|.+.+.+ ..++.|.- ++ +.+.+...+.....|.||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4688999999999998 77764433 33 2345566778889999998764
No 202
>PRK07058 acetate kinase; Provisional
Probab=75.36 E-value=30 Score=36.49 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhhc
Q psy8852 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGST-RMKHIHEGVSNFF 469 (634)
Q Consensus 422 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f 469 (634)
+-++.++.+.|-...... ..+|.|+++||-+ ..+.+++.+.+.+
T Consensus 299 d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 299 DLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 334444444444433333 3599999999999 9999999998776
No 203
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=75.18 E-value=1.1e+02 Score=31.69 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=37.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 414 MKQFFTITQH----LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 414 r~~~e~~~~~----~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
.++.++++.. .++-+.+..+++++..+ .+.++++||-+....+|+++++..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3444444443 44555666677777655 568999999999999999999876
No 204
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=75.08 E-value=36 Score=35.22 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=40.5
Q ss_pred cCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCC----CCChhhHHHHHHHHHHhHhc
Q psy8852 443 IKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLT----SIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 443 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~----~~~p~~ava~GAa~~a~~~~ 495 (634)
..+.+..+++||+.+.|.+.+.|...++ ..|.. ..+++..=|.+-|++|....
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 3567899999999999999999999994 34432 45677666777777776543
No 205
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=72.12 E-value=11 Score=43.27 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcc---CCcCCC---CChhhHHHHHHHHHHh
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFK---TTLLTS---IDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~---~~~~~~---~~p~~ava~GAa~~a~ 492 (634)
.++.|+|+||.++...+++.+.+.++ .+++.+ .-.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988774 344432 2347889999988763
No 206
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=71.77 E-value=3.9 Score=33.74 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.3
Q ss_pred EEEEEeCCceEEEEEEE-CCe
Q psy8852 135 SIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 135 vvGID~GTt~s~va~~~-~g~ 154 (634)
++|||+|.|++++|+.+ +|+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred EEEEccCCCeEEEEEECCCCC
Confidence 79999999999999986 444
No 207
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=71.05 E-value=3.5 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred ceEEEEEeCCceEEEEEEE-CCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~-~g~ 154 (634)
++++|||+|||++++++++ +|+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~ 25 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGN 25 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCC
Confidence 5799999999999999998 554
No 208
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=70.55 E-value=9.8 Score=29.23 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=38.8
Q ss_pred EEEEEEECCCeeEEEEEEEecCCeE-EEEE-EecCCCCCHHHHHHhhhc
Q psy8852 587 IKVTYQVDADGLLSIFAYEKISGKK-KFIT-IKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 587 i~v~~~~d~~g~l~v~~~~~~~g~~-~~~~-i~~~~~~~~~ei~~~~~~ 633 (634)
....+.++.+|.++|.+.|..+|.. ..++ |..+.-.|..+|.+++.+
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~l~vtGI~~~~l~s~rdI~~LI~e 63 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVELTVTGISTSALNSSRDIVRLIAE 63 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEEEEEcCcCHHHcCCHHHHHHHHHH
Confidence 5678999999999999999999997 4444 555667899999998865
No 209
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=70.21 E-value=1.1e+02 Score=32.53 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCc-CcHHHHHHHHhhc
Q psy8852 445 DINNVILVGGST-RMKHIHEGVSNFF 469 (634)
Q Consensus 445 ~i~~ViLvGG~s-~~p~v~~~l~~~f 469 (634)
.+|.|+++||.+ ..+.+++.+.+.+
T Consensus 327 ~vDaiVFTGGIGEns~~vr~~i~~~l 352 (404)
T TIGR00016 327 NLDAIVFTGGIGENAATVRELVLEAL 352 (404)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhh
Confidence 489999999999 9999999998766
No 210
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=70.16 E-value=3.8 Score=40.59 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=17.8
Q ss_pred eEEEEEeCCceEEEEEEECCe
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~ 154 (634)
+++|||+|||.++++++++|+
T Consensus 1 ~~lGIDiGtts~K~vl~d~g~ 21 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLMEDGK 21 (248)
T ss_pred CEEEEEcChhheEEEEEcCCE
Confidence 468999999999999987553
No 211
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=69.91 E-value=3.8 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.148 Sum_probs=19.2
Q ss_pred ceEEEEEeCCceEEEEEEE-CCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~-~g~ 154 (634)
.+++|||+|||++++++++ +|+
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~ 24 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGN 24 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCC
Confidence 4789999999999999998 554
No 212
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=69.81 E-value=56 Score=34.72 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCc-CcHHHHHHHHhhc
Q psy8852 444 KDINNVILVGGST-RMKHIHEGVSNFF 469 (634)
Q Consensus 444 ~~i~~ViLvGG~s-~~p~v~~~l~~~f 469 (634)
..+|.|+++||.+ ..+.+++.+.+.+
T Consensus 322 g~vDaiVfTGGIgE~s~~lr~~I~~~l 348 (402)
T PRK00180 322 GRLDAIVFTAGIGENSALVREKVLEGL 348 (402)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHhhh
Confidence 3699999999999 9999999998776
No 213
>PLN02669 xylulokinase
Probab=69.10 E-value=4.4 Score=45.35 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=22.6
Q ss_pred cCCCceEEEEEeCCceEEEEEEE-CCee
Q psy8852 129 VKNKCVSIGIDFGTTNSLVAIVR-NNIP 155 (634)
Q Consensus 129 ~p~~~~vvGID~GTt~s~va~~~-~g~~ 155 (634)
-|...+++|||+||+.+++++++ +|++
T Consensus 4 ~~~~~~~LGiD~GT~s~Ka~l~d~~g~v 31 (556)
T PLN02669 4 LPEDSLFLGFDSSTQSLKATVLDSNLRI 31 (556)
T ss_pred CCCCCeEEEEecccCCeEEEEEcCCCCE
Confidence 35668899999999999999998 5553
No 214
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=68.89 E-value=17 Score=26.95 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=26.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
...++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67889999999999999999999999965
No 215
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=68.81 E-value=1.4e+02 Score=30.42 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.1
Q ss_pred CCCceEEEEEeCCceEEEEEEE-CCe
Q psy8852 130 KNKCVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 130 p~~~~vvGID~GTt~s~va~~~-~g~ 154 (634)
|...+++|||+|.|++.+++.+ +|+
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~ 28 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGE 28 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCc
Confidence 4557899999999999999987 555
No 216
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=68.77 E-value=8.7 Score=33.48 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=33.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChh
Q psy8852 6 DFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 66 (634)
Q Consensus 6 ~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~ 66 (634)
.||||++ ..+.++|.+.|.+|-...+|++-. |-- .-+.|..|.+.|-.+.
T Consensus 62 ~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGG--SfY-------LQSKV~rAKErl~~El 111 (127)
T PF03656_consen 62 QILNVKE--ELSREEIQKRYKHLFKANDPSKGG--SFY-------LQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHT--G----SHHHHHHHHHHHHHHT-CCCTS---HH-------HHHHHHHHHHHHHHHH
T ss_pred HHcCCCC--ccCHHHHHHHHHHHHhccCCCcCC--CHH-------HHHHHHHHHHHHHHHH
Confidence 6899999 566889999999999999999732 211 1235888888886444
No 217
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=67.53 E-value=4.6 Score=44.13 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.7
Q ss_pred eEEEEEeCCceEEEEEEE-CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~ 154 (634)
+++|||+|||.+++++++ +|+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~ 23 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK 23 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC
Confidence 589999999999999998 554
No 218
>PRK15027 xylulokinase; Provisional
Probab=67.05 E-value=4.4 Score=44.52 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.3
Q ss_pred eEEEEEeCCceEEEEEEE-CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~ 154 (634)
+++|||+|||++++++++ +|+
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~ 22 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE 22 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC
Confidence 379999999999999998 555
No 219
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=66.33 E-value=75 Score=31.31 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=44.6
Q ss_pred CCCcCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEE
Q psy8852 258 NNRIFGAVI--TVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 258 ~~~~~~~vi--TVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~ 331 (634)
+..+..++. .+|.+|+ .-+++++.+...|.+. .+.+--.||.+....+.. .....++++|+|-|.|-..++
T Consensus 111 g~~~~~~~y~~~~P~~~T--Rm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFT--RMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHH--HHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE
Confidence 556778888 7887754 2244555555555555 344444444444433332 145679999999999888877
No 220
>PRK12440 acetate kinase; Reviewed
Probab=65.91 E-value=1.3e+02 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHH-HHHHHHhhcc
Q psy8852 424 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH-IHEGVSNFFK 470 (634)
Q Consensus 424 ~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~-v~~~l~~~f~ 470 (634)
++.++.+.|-......+ .+|.|+++||-+.... +++.+.+.++
T Consensus 303 f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 303 FTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44444444444333332 5999999999887666 9999887663
No 221
>KOG0678|consensus
Probab=65.22 E-value=1.7e+02 Score=29.96 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=55.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---ecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEEEEeCCe
Q psy8852 262 FGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRL---LNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISILKFKNGV 337 (634)
Q Consensus 262 ~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~l---i~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~ 337 (634)
....+|-|.--.++-|+-+.+..-.. +++..+ +..-.|.|..|....- +..-.=+|+|-|-|-|-+-.+ ..+
T Consensus 107 h~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipv--aEg- 182 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPV--AEG- 182 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEe--ecc-
Confidence 45788888888888887776654332 232222 1122222333322211 122334799999997665543 233
Q ss_pred EEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 338 FKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 338 ~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+.+.+.-.+.++.|++++.-+...+++
T Consensus 183 yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 183 YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred eEEeeeeccccccCCchhHHHHHHhhC
Confidence 223443556899999998776665543
No 222
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=64.68 E-value=5.4 Score=43.97 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.0
Q ss_pred ceEEEEEeCCceEEEEEEE-CCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~-~g~ 154 (634)
++++|||+|||++++++++ +|+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~ 23 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGN 23 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCC
Confidence 3689999999999999998 554
No 223
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=64.66 E-value=6.9 Score=40.09 Aligned_cols=32 Identities=19% Similarity=-0.045 Sum_probs=22.3
Q ss_pred hhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEE
Q psy8852 298 PTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKF 333 (634)
Q Consensus 298 p~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~ 333 (634)
+.|.|.+.+.. -.+++++|+||.|||++++.-
T Consensus 116 ~~a~A~~la~~----~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 116 WLATAQLIAKR----IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred HHHHHHHHHhc----CCCEEEEEcCccceeeEEecC
Confidence 55544433332 245899999999999998754
No 224
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=63.89 E-value=1.8e+02 Score=29.77 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 427 RTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 427 ~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
-+.+.++.+++.. .++.|+|.||.+....+++.|.+.+
T Consensus 245 ~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3445555555543 4678999999999999999998887
No 225
>PLN02295 glycerol kinase
Probab=63.46 E-value=5.6 Score=44.07 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.8
Q ss_pred eEEEEEeCCceEEEEEEE-CCee
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNIP 155 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~~ 155 (634)
+++|||+|||.+++++++ +|++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~ 23 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARP 23 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCE
Confidence 479999999999999998 5653
No 226
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=63.42 E-value=9 Score=33.94 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.3
Q ss_pred eEEEEEeCCceEEEEEEECCe
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~ 154 (634)
.++|||+|+..+.+|+.+...
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 479999999999999998653
No 227
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=62.17 E-value=27 Score=33.43 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=33.7
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCC-eEEEEEEcCCCC---ccchhHHHHHHHHHHHHH
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNG-VFKVLSVGGDSN---LGGDDFDYCLFSWIVKNA 366 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~-~~~v~~~~~~~~---lGG~~id~~l~~~l~~~~ 366 (634)
..+.+|++|+||.++-++++++.+. .+++.......+ .-|.. ..|++|+.+.+
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 6678999999999999999999876 343332222111 01111 55667776654
No 228
>PRK00047 glpK glycerol kinase; Provisional
Probab=62.15 E-value=6.5 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.1
Q ss_pred ceEEEEEeCCceEEEEEEE-CCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~-~g~ 154 (634)
++++|||+|||++++++++ +|+
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g~ 27 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDGN 27 (498)
T ss_pred CEEEEEecCCCceEEEEECCCCC
Confidence 4689999999999999988 555
No 229
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=61.39 E-value=6.5 Score=43.50 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.1
Q ss_pred eEEEEEeCCceEEEEEEE-CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~ 154 (634)
+++|||+|||++++++++ +|+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~ 22 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK 22 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC
Confidence 479999999999999998 554
No 230
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=60.48 E-value=7.4 Score=40.75 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.4
Q ss_pred ceEEEEEeCCceEEEEEEECCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~ 154 (634)
++++|||+|+|.+++.+.+++.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 5789999999999999988654
No 231
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=59.05 E-value=8.7 Score=42.84 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.5
Q ss_pred eEEEEEeCCceEEEEEEE--CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR--NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~--~g~ 154 (634)
+++|||+|||.+++++++ +|+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~ 24 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE 24 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc
Confidence 589999999999999999 454
No 232
>PLN02405 hexokinase
Probab=58.63 E-value=1.8e+02 Score=31.91 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCc--eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEE
Q psy8852 273 NDIQRQFTKNAAKLAGLN--VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISI 330 (634)
Q Consensus 273 ~~~qr~~l~~aa~~aGl~--~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv 330 (634)
...-.+.+.+|.+.-|++ +..++|+.++..++..+..+ ...+-+=+|-||=-+.+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~---~~~iG~IlGTGtNacY~ 260 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP---DVVAAVILGTGTNAAYV 260 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC---CceEEEEEeCCeeeEEE
Confidence 455678889999888885 78899999998887666543 23344446776543333
No 233
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=58.54 E-value=38 Score=25.26 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 251 ~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
+....+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 6 ~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 6 QIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3344444332 467889999999999999999999999975
No 234
>PRK04123 ribulokinase; Provisional
Probab=58.49 E-value=9.4 Score=42.71 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.8
Q ss_pred ceEEEEEeCCceEEEEEEE
Q psy8852 133 CVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~ 151 (634)
++++|||+|||.+++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 5789999999999999998
No 235
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=58.45 E-value=2.4e+02 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 425 VNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 425 ~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
++-+.+.+..+++.. .++.|+++||-+...++|+.|++.+
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 334445555555543 4678999999999999999999987
No 236
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=57.30 E-value=8.8 Score=42.87 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEEeCCceEEEEEEE-CCe
Q psy8852 135 SIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 135 vvGID~GTt~s~va~~~-~g~ 154 (634)
++|||+|||++++++++ +|+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~ 22 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD 22 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC
Confidence 68999999999999998 554
No 237
>PLN02362 hexokinase
Probab=57.07 E-value=2.1e+02 Score=31.64 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCe
Q psy8852 273 NDIQRQFTKNAAKLAGL--NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGT 325 (634)
Q Consensus 273 ~~~qr~~l~~aa~~aGl--~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT 325 (634)
...-.+.+.+|...-|+ ++..++|+.+|..++..+..+ ...+-+=+|-||
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~---~~~iG~IlGTGt 255 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP---DTVAAVIIGTGT 255 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCc
Confidence 45567888899888887 478899999998887665543 233333456664
No 238
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=55.69 E-value=13 Score=30.53 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHHHHc-CChhhhHHHHHHhcCCCCccccccCCCHHHHHHHHHHHH
Q psy8852 53 TYLNKAYSIL-KDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRE 101 (634)
Q Consensus 53 ~~i~~Ay~~L-~d~~~r~~y~~~l~~~~~~~~~~~~~~~~~l~~~~e~~e 101 (634)
.+...+|+.| ++|..|..|+..+....+..--...+++++|.++++.=.
T Consensus 8 ~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~ 57 (94)
T PF13877_consen 8 YEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALN 57 (94)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3566778877 889999999998866665554455778999999887644
No 239
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=55.14 E-value=2.2e+02 Score=30.25 Aligned_cols=44 Identities=7% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcC-cHHHHHHHHhhc
Q psy8852 423 HLVNRTILLSSKALMDANLTIKDINNVILVGGSTR-MKHIHEGVSNFF 469 (634)
Q Consensus 423 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~-~p~v~~~l~~~f 469 (634)
-++.++...|-....... ..+|.|+++||.+. .+.+++.+.+.+
T Consensus 301 ~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 301 AFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 344444444444333331 36899999999886 578989887765
No 240
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=54.97 E-value=3.3e+02 Score=30.07 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=56.0
Q ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHH-HHHHhhccCCcCCC-CChhhHHHHHH
Q psy8852 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH-EGVSNFFKTTLLTS-IDPDKAVVFGA 487 (634)
Q Consensus 410 ~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~f~~~~~~~-~~p~~ava~GA 487 (634)
.+....++...++..++++...+-..+.+.. ..+.+.++||.+..-..- +.+.+-+...+.+. .-.+...|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 3445566667777777777665555555432 156899999988766555 77777777677654 34466789999
Q ss_pred HHHHhHhcC
Q psy8852 488 AIQANFLSG 496 (634)
Q Consensus 488 a~~a~~~~~ 496 (634)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999875543
No 241
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=54.41 E-value=58 Score=34.80 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=59.4
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCc-cchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc
Q psy8852 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL-GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQS 394 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l-GG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 394 (634)
-+.+|+|.+|.-.+++....+..--.....+.+. -|.|+-.+|..-..
T Consensus 3 GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~------------------------------- 51 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALS------------------------------- 51 (412)
T ss_dssp EEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH--------------------------------
T ss_pred EEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcC-------------------------------
Confidence 3689999999999999987765433333333333 34444444421100
Q ss_pred ceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHH
Q psy8852 395 SVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 464 (634)
Q Consensus 395 ~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 464 (634)
.+.++++-.-+++.+..++.+.+.++++..++|..++++|-++-...+...
T Consensus 52 -------------------~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl 102 (412)
T PF14574_consen 52 -------------------PEGLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGL 102 (412)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT-
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCC
Confidence 122455556677888888999999999999999999999976555444443
No 242
>PLN02596 hexokinase-like
Probab=53.48 E-value=1.4e+02 Score=32.81 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEE
Q psy8852 274 DIQRQFTKNAAKLAGL--NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKF 333 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl--~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~ 333 (634)
..-.+.+.+|.+.-|+ ++..++|+.++..++.++... ...+-+=+|-||=-+.+-++
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~---~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK---DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC---CeEEEEEEecccceEEEEEc
Confidence 3344555666665565 578899999999887766643 23333336777544443333
No 243
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=53.45 E-value=14 Score=32.98 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.2
Q ss_pred ceEEEEEeCCceEEEEEEECC
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNN 153 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g 153 (634)
..++|||+||-.+.+|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 468999999999999998754
No 244
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=53.23 E-value=55 Score=32.42 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCcCcHH----HHHHHHhhc-----cCCcCC--CCChhhHHHHHHHHHHhHhcCC
Q psy8852 445 DINNVILVGGSTRMKH----IHEGVSNFF-----KTTLLT--SIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~----v~~~l~~~f-----~~~~~~--~~~p~~ava~GAa~~a~~~~~~ 497 (634)
..+.|+|.|-++++|- +++.|++.| +..+.. ..--..-.|.|||+.|.-+++.
T Consensus 273 ~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 273 YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred CcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 4678999999999865 555666665 223321 2212233588999988777664
No 245
>KOG2708|consensus
Probab=52.29 E-value=1.2e+02 Score=29.28 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=46.1
Q ss_pred EEeHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc---CCcCCCCChhhHHHHH
Q psy8852 411 TIDMKQFF-TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK---TTLLTSIDPDKAVVFG 486 (634)
Q Consensus 411 ~itr~~~e-~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~---~~~~~~~~p~~ava~G 486 (634)
+.|.+++- .+-+.++.-+.+.-++++..++ -+.|++|||-...--+|++...++. .+++ ..|-..|+-.|
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG 297 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNG 297 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCc
Confidence 34554443 3333455555666677777655 3589999999999999999998883 2333 23334555555
Q ss_pred HHH
Q psy8852 487 AAI 489 (634)
Q Consensus 487 Aa~ 489 (634)
+-+
T Consensus 298 ~MI 300 (336)
T KOG2708|consen 298 VMI 300 (336)
T ss_pred hHH
Confidence 544
No 246
>PTZ00107 hexokinase; Provisional
Probab=52.03 E-value=1.8e+02 Score=31.65 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred cccC---CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhh
Q psy8852 127 ISVK---NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRF 203 (634)
Q Consensus 127 ~~~p---~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~ 203 (634)
+..| .....++||||.||.+|+.+.=+.-......+....+|..+--.+.+
T Consensus 65 ~~lPtG~E~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~-------------------------- 118 (464)
T PTZ00107 65 YNLPTGKEKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKG-------------------------- 118 (464)
T ss_pred CCCCCCCccceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccc--------------------------
Q ss_pred cCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHh------CCCcCcEEEEeC--------
Q psy8852 204 IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAV------NNRIFGAVITVP-------- 269 (634)
Q Consensus 204 lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~------~~~~~~~viTVP-------- 269 (634)
.-.+..+.+++...+-..|.+....+. ..-.-.+.+|.|
T Consensus 119 ---------------------------~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~ 171 (464)
T PTZ00107 119 ---------------------------LLDKKATATDLFDHIAKSIKKMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNN 171 (464)
T ss_pred ---------------------------cccccCCHHHHHHHHHHHHHHHHHhccccccccccccceeEEeeeeecccCCc
Q ss_pred ----------CC--------CCHHHHHHHHHHHHHcCCc--eeeeecchhHHHHHhhhccCc-cceEEEEEEeCCCe
Q psy8852 270 ----------AY--------FNDIQRQFTKNAAKLAGLN--VLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGT 325 (634)
Q Consensus 270 ----------a~--------~~~~qr~~l~~aa~~aGl~--~~~li~Ep~AAa~~y~~~~~~-~~~~vlV~D~GggT 325 (634)
.. -...-.+.+.+|.+.-|++ +..++++.+|..++.++...+ .+...+-+=+|-||
T Consensus 172 g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~ 248 (464)
T PTZ00107 172 AILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGS 248 (464)
T ss_pred eEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccc
No 247
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=51.37 E-value=1.5e+02 Score=30.57 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHcCCceeeeecchhHHHHHhhhcc-----------CccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcC-CCCcc-c
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDK-----------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGG-DSNLG-G 351 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~-----------~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~-~~~lG-G 351 (634)
+..|++.+.+||+=+|.|++...-. .......+|+-.|.| +-++.+--.++.+.++.+.+ +..+. -
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---S
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCC
Confidence 4568899999999999998763211 114667889988866 66666655666655776654 44444 3
Q ss_pred hhHHHHHHHHHHHHHhhcc----CCHHHHHHHHHHH
Q psy8852 352 DDFDYCLFSWIVKNAFLKK----LSYKDVNILMIKS 383 (634)
Q Consensus 352 ~~id~~l~~~l~~~~~~~~----~~~~~~~~L~~~~ 383 (634)
.+.+..|.+++.+++..-. .+-+.+.++++..
T Consensus 167 ~~~e~~l~~~l~~~~~~vs~E~vlSG~GL~~ly~~l 202 (316)
T PF02685_consen 167 TDEEAELLRFLRRRYGRVSVERVLSGRGLENLYRFL 202 (316)
T ss_dssp SHHHHHHHHHHHHHCTS-BHHHCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCceeEeecchhhHHHHHHHH
Confidence 5677889999999885332 4555555555544
No 248
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=49.63 E-value=58 Score=24.25 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=26.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
...++.|+.++..+|..+.+.|+..|+..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 46789999999999999999999999865
No 249
>PRK13321 pantothenate kinase; Reviewed
Probab=47.76 E-value=21 Score=35.43 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.2
Q ss_pred eEEEEEeCCceEEEEEEECCe
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~ 154 (634)
++++||+|.|+++++++++++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred CEEEEEECCCeEEEEEEECCE
Confidence 368999999999999998663
No 250
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=47.67 E-value=18 Score=32.18 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=17.5
Q ss_pred eEEEEEeCCceEEEEEEECC
Q psy8852 134 VSIGIDFGTTNSLVAIVRNN 153 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g 153 (634)
.++|||+|+..+.+|+.+..
T Consensus 5 ~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred cEEEEEeCCCEEEEEEecCC
Confidence 48999999999999998753
No 251
>PRK13318 pantothenate kinase; Reviewed
Probab=47.28 E-value=21 Score=35.50 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEEEeCCceEEEEEEECCe
Q psy8852 135 SIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~ 154 (634)
+++||+|.|+++++++++|+
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 252
>KOG2517|consensus
Probab=46.63 E-value=20 Score=39.02 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.4
Q ss_pred CceEEEEEeCCceEEEEEEE
Q psy8852 132 KCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~ 151 (634)
.++++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 36899999999999999998
No 253
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=46.24 E-value=69 Score=33.49 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccC----CcCCCCChhhHHHHHHHH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKT----TLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~----~~~~~~~p~~ava~GAa~ 489 (634)
+++.|++.||.+..+.+.+.+.+.+.. .++...+-.++.|.||.-
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 578999999999999888888887742 333344556778888764
No 254
>PRK12379 propionate/acetate kinase; Provisional
Probab=45.87 E-value=3.9e+02 Score=28.36 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=18.3
Q ss_pred CceEEEEEeCCceEEEEEEE
Q psy8852 132 KCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~ 151 (634)
.++++.|.-|++..+.+++.
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~ 23 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLD 23 (396)
T ss_pred CCEEEEEECChHhheEEEEE
Confidence 46899999999999999998
No 255
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=45.41 E-value=38 Score=30.53 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.4
Q ss_pred EEEEEeCCceEEEEEEE--CCeeEEE
Q psy8852 135 SIGIDFGTTNSLVAIVR--NNIPEVL 158 (634)
Q Consensus 135 vvGID~GTt~s~va~~~--~g~~~vi 158 (634)
++|||-|++++..|+.. ++....+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 68999999999999987 4455544
No 256
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=45.13 E-value=46 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 262 FGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 262 ~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
..-.++.|+.+++.+|+.+...|...|+..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 366778899999999999999999999965
No 257
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.63 E-value=1.6e+02 Score=29.11 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=47.6
Q ss_pred HHHHHHHHc---CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHH
Q psy8852 279 FTKNAAKLA---GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355 (634)
Q Consensus 279 ~l~~aa~~a---Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 355 (634)
.|+.|+..| +-. ..+++.-.||+.....+.. ....+|+|+|-|++..+++.-+ .+.-+.......+.-+.|-
T Consensus 192 RMraaa~sal~~~t~-av~mDskfaav~gal~dpa--a~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekle 266 (342)
T COG4012 192 RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLE 266 (342)
T ss_pred HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHH
Confidence 455544443 322 4556666666665555543 3478999999999998877543 3433333333555555555
Q ss_pred HHHHHHHHHHH
Q psy8852 356 YCLFSWIVKNA 366 (634)
Q Consensus 356 ~~l~~~l~~~~ 366 (634)
..|.+++.-++
T Consensus 267 d~I~rf~~GeL 277 (342)
T COG4012 267 DQIIRFVEGEL 277 (342)
T ss_pred HHHHHHHhccc
Confidence 55555444443
No 258
>PRK07157 acetate kinase; Provisional
Probab=44.57 E-value=2.4e+02 Score=30.00 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCcCcHH-HHHHHHhhc
Q psy8852 445 DINNVILVGGSTRMKH-IHEGVSNFF 469 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~-v~~~l~~~f 469 (634)
.+|.|+++||-+.... +++.+.+.+
T Consensus 320 ~vDaiVFTgGIGen~~~vr~~i~~~l 345 (400)
T PRK07157 320 KIDAIVFTAGVGENSAFVRELVINKI 345 (400)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhc
Confidence 4899999999887766 999998765
No 259
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.10 E-value=62 Score=23.79 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 249 l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
+.+..+.++... .-.++.|+ ++..+|..+.+.|...|+..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 444444444333 45679998 89999999999999999864
No 260
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=43.54 E-value=38 Score=32.42 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCc---eeeeecchhHHHHHhhh
Q psy8852 275 IQRQFTKNAAKLAGLN---VLRLLNEPTSAAIAYKL 307 (634)
Q Consensus 275 ~qr~~l~~aa~~aGl~---~~~li~Ep~AAa~~y~~ 307 (634)
.-.+.+.+|....|++ ++.++++.+|..++.++
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3446667777777764 67889999998887654
No 261
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.51 E-value=3.3e+02 Score=26.78 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=35.8
Q ss_pred cCCCCeEEEEcCCcCcHH---HHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCC
Q psy8852 443 IKDINNVILVGGSTRMKH---IHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 443 ~~~i~~ViLvGG~s~~p~---v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
..+.+.|+|.|--+.+.. +++.+....-.++. .-|-+..+.|.|+.|+-....
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~~--~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKVA--VLPPESAAIGLALIARDIASG 321 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHHh--hcCchhhhhhhHHHHHHHHcC
Confidence 456789999998777776 66666665533332 223455799999998866544
No 262
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=42.84 E-value=3.8e+02 Score=27.24 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCc-HHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 423 HLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM-KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 423 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
.++++....+...++...+. .....+.|.||.... +++.+...+....+. ...+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~~~-~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALSIF-NGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHhcc-cCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHHh
Confidence 45666666666666654322 245689999998877 888888777764443 445678999888643
No 263
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.46 E-value=86 Score=31.62 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccC-------CcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKT-------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~-------~~~~~~~p~~ava~GAa~~a~ 492 (634)
+++.|+|-|+.+..+.+.+.+++.+.. ++..+.....+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 467899888877766666666665532 122233456778999998864
No 264
>KOG1369|consensus
Probab=41.70 E-value=1.3e+02 Score=32.70 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=46.3
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCc---eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEe
Q psy8852 268 VPAYFNDIQRQFTKNAAKLAGLN---VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK 334 (634)
Q Consensus 268 VPa~~~~~qr~~l~~aa~~aGl~---~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~ 334 (634)
++......-.+.+.+|.+.-|+. +..++++.++..++..+... ++++-+=+|.||=-+.+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~---~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP---NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC---CcEEEEEECCCccceeeeecc
Confidence 34444556678899999999885 77899999998887666544 556666678888666665554
No 265
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=41.57 E-value=68 Score=34.26 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=50.4
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHH-hhccC----CcCCCCCh
Q psy8852 405 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS-NFFKT----TLLTSIDP 479 (634)
Q Consensus 405 g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~-~~f~~----~~~~~~~p 479 (634)
+..-.+.||..+++++.. .-..+..-++-.|++++++.++|+.|+|.||++.-=-+.+.+. .+++. ++...-
T Consensus 288 ~~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~G-- 364 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVG-- 364 (412)
T ss_dssp SSSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC--
T ss_pred CCCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEEC--
Confidence 345578899999987543 2344666777888999999999999999999998666666664 23332 122222
Q ss_pred hhHHHHHHHHHH
Q psy8852 480 DKAVVFGAAIQA 491 (634)
Q Consensus 480 ~~ava~GAa~~a 491 (634)
.+.-.||.+..
T Consensus 365 -N~al~GA~~~L 375 (412)
T PF14574_consen 365 -NAALAGARMAL 375 (412)
T ss_dssp --HHHHHHHHHH
T ss_pred -cHHHHHHHHHh
Confidence 34466777654
No 266
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=40.18 E-value=4.3e+02 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHH
Q psy8852 429 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFG 486 (634)
Q Consensus 429 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~G 486 (634)
...++.+++.. .++.|+|+||.+...++.+.|.+.+ |.+++.+. -.|.+++.|
T Consensus 231 ~~~a~~~~~~~-----g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 231 VEVTERALAHT-----GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred HHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 34444444443 3668999999999999999999865 44444322 235666666
No 267
>PLN02914 hexokinase
Probab=39.75 E-value=5.5e+02 Score=28.23 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEE
Q psy8852 272 FNDIQRQFTKNAAKLAGL--NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILK 332 (634)
Q Consensus 272 ~~~~qr~~l~~aa~~aGl--~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~ 332 (634)
-...-.+.+.+|.+.-|+ ++..++++.+|..++..+..+ ...+-+=+|-||=-+.+-+
T Consensus 203 ~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~---~~~iGlIlGTGtNacY~E~ 262 (490)
T PLN02914 203 AGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD---DVMVAVILGTGTNACYVER 262 (490)
T ss_pred cCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCeeeEEEee
Confidence 345567888899888776 478899999998887666543 2333344677654444333
No 268
>PRK12408 glucokinase; Provisional
Probab=38.62 E-value=24 Score=36.62 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCCCCc-ccCCCceEEEEEeCCceEEEEEEE-CCe
Q psy8852 122 SEPDDI-SVKNKCVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 122 ~~p~~~-~~p~~~~vvGID~GTt~s~va~~~-~g~ 154 (634)
+.|+.+ ..|.+..++|+|+|.|++++++++ ++.
T Consensus 4 ~~~~~~~~~~~~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 4 SSPSAAVAVPRPESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred CCccccccCcccccEEEEEcChhhhheeEEeccCC
Confidence 345443 445667789999999999999987 343
No 269
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=38.08 E-value=2.1e+02 Score=30.44 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
..+.+++.++++++...++..+..+|.+.. .+...|+.+.. .+=-.|.++||.++.
T Consensus 181 a~~~l~~~l~~~Gl~~~di~~i~~TGyGR~------~i~~~~~ad~i--v~EItaha~GA~~L~ 236 (404)
T TIGR03286 181 AEEAVERALEEAGVSLEDVEAIGTTGYGRF------TIGEHFGADLI--QEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHHHHcCCCccceeEEEeeeecHH------HHhhhcCCCce--EEEEhhHHHHHHHhc
Confidence 445556667778877778999999998754 34445543322 122367799998764
No 270
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=37.14 E-value=21 Score=31.32 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.1
Q ss_pred EEEEeCCceEEEEEEEC
Q psy8852 136 IGIDFGTTNSLVAIVRN 152 (634)
Q Consensus 136 vGID~GTt~s~va~~~~ 152 (634)
+|||+|+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998764
No 271
>PLN02377 3-ketoacyl-CoA synthase
Probab=36.46 E-value=77 Score=34.84 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCcCcHHHHHHHHhhccCC
Q psy8852 416 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL-VGGSTRMKHIHEGVSNFFKTT 472 (634)
Q Consensus 416 ~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~~~ 472 (634)
.++...++...-+...++++|+++++++.+||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 455555556666778888999999999999999987 344556899999999999865
No 272
>KOG1794|consensus
Probab=35.41 E-value=1e+02 Score=30.94 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCeEEEEcCCcCc-HHHHHHHHhhc----cCCcCCCCChhhHHHHHHHHHHhHhcCC
Q psy8852 446 INNVILVGGSTRM-KHIHEGVSNFF----KTTLLTSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 446 i~~ViLvGG~s~~-p~v~~~l~~~f----~~~~~~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
.=.|+++||...+ ..+++-..... +.+.+....|.+.-|.|||+.|+.+.+.
T Consensus 264 ~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~~ 320 (336)
T KOG1794|consen 264 TLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDNI 320 (336)
T ss_pred cceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhccc
Confidence 3479999996554 34444332222 1222344567788899999999976653
No 273
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=35.26 E-value=5e+02 Score=26.43 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=63.2
Q ss_pred HHHcCCceeeeecchhHHHHHhhhcc-----------CccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEE-cCCCCcc-
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDK-----------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSV-GGDSNLG- 350 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~-----------~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~-~~~~~lG- 350 (634)
.+..|++.+.+||+=+|.|++...-. ...+...+|+-=|-| +-++-+-..++.+.++.. .|+..++
T Consensus 91 r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTG-LGVa~Lv~~~~~w~~lp~EGGHvdf~P 169 (320)
T COG0837 91 RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTG-LGVAGLVPNGGGWIPLPGEGGHVDFAP 169 (320)
T ss_pred HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCC-cceEEEEecCCeeEeccCCCccccCCC
Confidence 34579999999999999988753211 114455666654444 444444344444666554 4455555
Q ss_pred chhHHHHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHHH
Q psy8852 351 GDDFDYCLFSWIVKNAFLKK----LSYKDVNILMIKSREIK 387 (634)
Q Consensus 351 G~~id~~l~~~l~~~~~~~~----~~~~~~~~L~~~~e~~K 387 (634)
.+..+-.+.+++.++++.-. ++-.-+..++++...++
T Consensus 170 ~~~~E~~i~~~l~~~~GrVS~Er~LSG~GL~~iY~al~~~~ 210 (320)
T COG0837 170 RSEREFQILEYLRARFGRVSAERVLSGPGLVNLYRALCAAD 210 (320)
T ss_pred CCHHHHHHHHHHHHhcCccchhhhcccccHHHHHHHHHHhh
Confidence 56789999999999987543 34444455555554444
No 274
>PLN03170 chalcone synthase; Provisional
Probab=35.12 E-value=1.3e+02 Score=32.26 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhhccCCc
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGST-RMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~~~~ 473 (634)
..+...+-..+.++++|++++++.++|+.|+++-.+. .+|.+--.|.+.+|.+.
T Consensus 102 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 102 VVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 3344455567788999999999999999998776544 69999999999998654
No 275
>PLN03173 chalcone synthase; Provisional
Probab=34.59 E-value=1.3e+02 Score=32.11 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhhccCCc
Q psy8852 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGST-RMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 422 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~~~~ 473 (634)
+...+-..+.++++|++++++..+|+.|+++..+. ..|.+--.|.+.+|.+.
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 34445556788999999999999999998886544 58999999999998654
No 276
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=34.36 E-value=44 Score=35.90 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred cCCCcCCCCeEEEEcC-CcCcH--HHHHHHHh
Q psy8852 439 ANLTIKDINNVILVGG-STRMK--HIHEGVSN 467 (634)
Q Consensus 439 ~~~~~~~i~~ViLvGG-~s~~p--~v~~~l~~ 467 (634)
.|-+...++.|+-+|| .++.| ....+++.
T Consensus 383 ~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 383 IGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred cCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 3445557899999999 56777 66666644
No 277
>PRK12397 propionate kinase; Reviewed
Probab=33.68 E-value=6.2e+02 Score=27.02 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCc-CcHHHHHHHHhhc
Q psy8852 444 KDINNVILVGGST-RMKHIHEGVSNFF 469 (634)
Q Consensus 444 ~~i~~ViLvGG~s-~~p~v~~~l~~~f 469 (634)
..+|.|+++||.+ ..+.+|+.+-+.+
T Consensus 320 ggvDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 320 GGLDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred CCCCEEEECCchhhCCHHHHHHHHhhh
Confidence 3699999999965 6788888887654
No 278
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=33.51 E-value=27 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHcC
Q psy8852 51 LSTYLNKAYSILK 63 (634)
Q Consensus 51 ~~~~i~~Ay~~L~ 63 (634)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3556778887774
No 279
>PRK13326 pantothenate kinase; Reviewed
Probab=33.28 E-value=50 Score=32.96 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.5
Q ss_pred ceEEEEEeCCceEEEEEEECCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~ 154 (634)
...+.||.|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 5679999999999999999765
No 280
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=32.30 E-value=88 Score=26.26 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=41.2
Q ss_pred CCCccccCCCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHc--CChhhhHHH
Q psy8852 2 KNYFDFFNLPKCFN---IDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL--KDPFLRSIY 71 (634)
Q Consensus 2 ~~~~~~l~~~~~~~---~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L--~d~~~r~~y 71 (634)
.+||+.||||-+.. +..=.|-|+|.+...+.+.+. +..++.+ ........+.+||+.. |+|..-+.+
T Consensus 15 EdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~-~~~~e~~--~~~~yr~~L~~AY~dF~~Stp~~ekvF 86 (105)
T PRK14102 15 EDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANF-PDLSEEE--KLEKYQLALEEAYQVFLTSTPLEQKLF 86 (105)
T ss_pred HHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhcccc-CCCCHHH--HHHHHHHHHHHHHHHHccCChhhhhhH
Confidence 37999999997554 233457788888877766443 2233332 2334555789999854 455544443
No 281
>PLN03172 chalcone synthase family protein; Provisional
Probab=32.25 E-value=1.4e+02 Score=31.86 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhhccCCc
Q psy8852 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGST-RMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~~~~ 473 (634)
+...+...+-..+.++++|++++++..+|+.|+++..+. .+|.+--.|.+.+|.+.
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 333344555567788999999999999999998776554 69999999999998644
No 282
>PLN02854 3-ketoacyl-CoA synthase
Probab=31.72 E-value=1e+02 Score=33.97 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCcCcHHHHHHHHhhccCC
Q psy8852 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVIL-VGGSTRMKHIHEGVSNFFKTT 472 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~~~ 472 (634)
++.-++.-.-+...++++|+++++++.+||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3333333334556677889999999999999987 344446899999999999865
No 283
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=31.72 E-value=28 Score=38.15 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.2
Q ss_pred EEEEeCCceEEEEEEE-CCee
Q psy8852 136 IGIDFGTTNSLVAIVR-NNIP 155 (634)
Q Consensus 136 vGID~GTt~s~va~~~-~g~~ 155 (634)
||||+||+++++++++ +|++
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i 21 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEV 21 (481)
T ss_pred CceeecCcceEEEEECCCCCE
Confidence 6999999999999998 5653
No 284
>PRK13320 pantothenate kinase; Reviewed
Probab=31.21 E-value=56 Score=32.19 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.4
Q ss_pred ceEEEEEeCCceEEEEEEECCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~ 154 (634)
.+++.||.|+|+++.+++.+++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 4689999999999999998765
No 285
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=30.89 E-value=1.3e+02 Score=25.38 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=41.4
Q ss_pred CCCccccCCCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHc--CChhhhHHH
Q psy8852 2 KNYFDFFNLPKCFN---IDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL--KDPFLRSIY 71 (634)
Q Consensus 2 ~~~~~~l~~~~~~~---~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L--~d~~~r~~y 71 (634)
.+||+.||||-+.. +..=.|-++|.+.....++. ...++.+ ........+.+||+.. |+|..-+.+
T Consensus 15 EdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~--~~~~e~~--~~~~~R~~L~~AY~dFv~S~p~~ekvF 85 (105)
T PF03206_consen 15 EDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFA--PGLSEEE--DWAAYRRALERAYQDFVTSTPLEEKVF 85 (105)
T ss_pred HHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCC--CCCCHHH--HHHHHHHHHHHHHHHHhcCChhhhHHH
Confidence 37999999997543 23345778898888888664 2333322 2234445699999854 555555544
No 286
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=30.76 E-value=39 Score=34.31 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=26.5
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEE
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILK 332 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~ 332 (634)
+...+.+-|.|.+..... .....++++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~-~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAA-RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH---HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhh-hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 455677778877775555 221445789999999999999985
No 287
>PF13446 RPT: A repeated domain in UCH-protein
Probab=30.70 E-value=1.4e+02 Score=22.13 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=20.1
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQK 30 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~ 30 (634)
+-|+.||++++ .+...|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~--~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDED--TDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCC--CCHHHHHHHHHHHHH
Confidence 35889999885 456689999987766
No 288
>KOG0724|consensus
Probab=29.73 E-value=52 Score=34.13 Aligned_cols=54 Identities=22% Similarity=0.065 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 18 MDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 18 ~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
...+..+|+.....+||++... ........++.+..|.+||.+|++..+|....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~ 59 (335)
T KOG0724|consen 6 EDELRLAYREMALKSHPEKKSF-YEKLSLWTEEEFKKIEKALAILDDDEPRRTPD 59 (335)
T ss_pred HHHHHHHHHHHhhhcCcHHHHH-HHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence 4579999999999999998542 00111134456788999999999866554443
No 289
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=29.55 E-value=57 Score=34.59 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=24.9
Q ss_pred cceEEEEEEeCCCeEEEEEEEEe-CCeEEEE
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFK-NGVFKVL 341 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~-~~~~~v~ 341 (634)
..+.+|++|+||..+-++.+++. ++.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 67789999999999999999997 4555443
No 290
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=29.20 E-value=3.5e+02 Score=22.77 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=36.5
Q ss_pred eeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC--CeeEEEEE
Q psy8852 537 YSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA--DGLLSIFA 603 (634)
Q Consensus 537 ~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~--~g~l~v~~ 603 (634)
.+..|....+....+.+.+|.-+.. .+..||+..+. +.....|. .+...+.+.. .|.|.+++
T Consensus 52 e~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~-~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 52 ETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGE-KVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred eEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCC-cEEEEEECCCCCCceEEEEE
Confidence 3444543333344588888875542 56789988873 33333342 4666777665 47777765
No 291
>PTZ00297 pantothenate kinase; Provisional
Probab=28.74 E-value=6.5e+02 Score=31.99 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh-----
Q psy8852 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELL----- 390 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~L----- 390 (634)
+|++.+|.| +|++++.+..-.....+|..--||.. ..+.+|+..|....+.|
T Consensus 1216 ~llvNIGSG---vSi~kv~~~~~~~~RvgGt~iGGGT~--------------------~GL~~llt~~~~f~e~l~~~~l 1272 (1452)
T PTZ00297 1216 CLLVNIGSG---ISIIKCLGPDGSHVRVGGSPIGGATF--------------------WGLVRTMTNVTSWEEVMEIMRL 1272 (1452)
T ss_pred eEEEEccCc---eEEEEEecCCCcEEEecCcccccHhH--------------------HHHHHHhcCCCCHHHHHHHHHH
Q ss_pred ---cCCcceEEEEE-ecC-------------------Ccee---------------------------------------
Q psy8852 391 ---SYQSSVKLNVK-LSD-------------------KKIV--------------------------------------- 408 (634)
Q Consensus 391 ---s~~~~~~i~i~-~~~-------------------g~~~--------------------------------------- 408 (634)
..+...++.|. +++ |+-.
T Consensus 1273 a~~Gd~~~vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1452)
T PTZ00297 1273 DGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISE 1352 (1452)
T ss_pred hhCCCccccceEEeeccCCCcccccCCCCcceeeeccCcccccccccccccccccccccccccccccccccccccccccc
Q ss_pred ------EEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC-CcCcHHHHHHHHhhc------cCCcCC
Q psy8852 409 ------NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGG-STRMKHIHEGVSNFF------KTTLLT 475 (634)
Q Consensus 409 ------~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~v~~~l~~~f------~~~~~~ 475 (634)
.-..+.+++..-+--.+..-+..+.-...+.. +++.|+++|+ ....|..++.|...+ ..+.+.
T Consensus 1353 ~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~~~----~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~f 1428 (1452)
T PTZ00297 1353 LPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQ----GVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHF 1428 (1452)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEE
Q ss_pred CCChhhHHHHHHHH
Q psy8852 476 SIDPDKAVVFGAAI 489 (634)
Q Consensus 476 ~~~p~~ava~GAa~ 489 (634)
..+-...-|.||++
T Consensus 1429 l~hegy~ga~Ga~~ 1442 (1452)
T PTZ00297 1429 LEHDGYLGALGCAT 1442 (1452)
T ss_pred ecCccccHHhhhhh
No 292
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.99 E-value=2.3e+02 Score=30.77 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=33.0
Q ss_pred EEEEEEeCCCeEEEEEEEEeCCeEEEE-EEcCCCCccchhHHHHHH
Q psy8852 315 IFAVYDLGGGTFDISILKFKNGVFKVL-SVGGDSNLGGDDFDYCLF 359 (634)
Q Consensus 315 ~vlV~D~GggT~dvsv~~~~~~~~~v~-~~~~~~~lGG~~id~~l~ 359 (634)
+=+-+|+|.+++-.-++.+..+.+.-. .+....--||+++|.+..
T Consensus 165 YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 165 YGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 346799999999999999987754433 334444559999987765
No 293
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=27.95 E-value=74 Score=29.58 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.9
Q ss_pred EEEEeCCceEEEEEEECC
Q psy8852 136 IGIDFGTTNSLVAIVRNN 153 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g 153 (634)
||||.|.|||=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999998888855
No 294
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=27.92 E-value=1.7e+02 Score=29.56 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEE-cCCcCcHHHHHHHHhhccCC
Q psy8852 427 RTILLSSKALMDANLTIKDINNVILV-GGSTRMKHIHEGVSNFFKTT 472 (634)
Q Consensus 427 ~~~~~i~~~l~~~~~~~~~i~~ViLv-GG~s~~p~v~~~l~~~f~~~ 472 (634)
-+...++++|+++++++.+||.+++. ..++-.|.+-.+|.+.||.+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 45677888899999999999977654 67889999999999999864
No 295
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=27.91 E-value=91 Score=27.51 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=20.7
Q ss_pred cCCCceEEEEEeCCceEEEEEEECCeeEEE
Q psy8852 129 VKNKCVSIGIDFGTTNSLVAIVRNNIPEVL 158 (634)
Q Consensus 129 ~p~~~~vvGID~GTt~s~va~~~~g~~~vi 158 (634)
.+...++||||=|||.-.+++--+|++-.+
T Consensus 28 ~~~~~lIVGiDPG~ttgiAildL~G~~l~l 57 (138)
T PF04312_consen 28 RSRRYLIVGIDPGTTTGIAILDLDGELLDL 57 (138)
T ss_pred cCCCCEEEEECCCceeEEEEEecCCcEEEE
Confidence 335679999999998764444338886433
No 296
>PLN03168 chalcone synthase; Provisional
Probab=27.23 E-value=1.7e+02 Score=31.08 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-cCcHHHHHHHHhhccCCc
Q psy8852 417 FFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGS-TRMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 417 ~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~ 473 (634)
.+...+...+-..+.++++|++++++.++|+.|+++-.+ -.+|.+--.|.+.+|.+.
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 333344455556788899999999999999999877432 358999999999998643
No 297
>KOG2707|consensus
Probab=27.07 E-value=7.4e+02 Score=25.84 Aligned_cols=217 Identities=16% Similarity=0.144 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHhCC---CcCcEEEEeCCCCCHHHHHHHHHHHHHcC-C-ceeeeecchhHHHHHhhhccCccceEE
Q psy8852 242 SAQIFITLKKIAENAVNN---RIFGAVITVPAYFNDIQRQFTKNAAKLAG-L-NVLRLLNEPTSAAIAYKLDKNIFEGIF 316 (634)
Q Consensus 242 ~~~~L~~l~~~a~~~~~~---~~~~~viTVPa~~~~~qr~~l~~aa~~aG-l-~~~~li~Ep~AAa~~y~~~~~~~~~~v 316 (634)
-..-+..+.+.+....+. ..+-+.+|+=....-.-+--++.|-..|+ + +.+.-|.--+|=|+...+..+...-.+
T Consensus 82 Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPF 161 (405)
T KOG2707|consen 82 HRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPF 161 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCce
Confidence 344455555555544443 34567888777776666666666666554 2 344455666777776665554445556
Q ss_pred EEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcce
Q psy8852 317 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSV 396 (634)
Q Consensus 317 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~ 396 (634)
+.+=+-||.+-+++.+ +-+.++.++..-|... |+.||..- +.++... .+...... +++-+.+....+.
T Consensus 162 l~lLvSGGH~llvla~-~~~~~~llg~TvDiAp-Ge~lDK~a-----r~Lgl~~-~~e~~~~~----g~aie~la~~~s~ 229 (405)
T KOG2707|consen 162 LALLVSGGHTLLVLAN-GVGDHELLGQTVDIAP-GEALDKCA-----RRLGLLG-HPEDARSG----GKAIEHLANRASA 229 (405)
T ss_pred eeEeeeCCceEEEEec-cccceeeeecccccch-HHHHHHHH-----HHhcCCC-Cccchhhh----hhHHHHHHhccCc
Confidence 6666777777766543 2235667776664433 56666543 2333322 11111111 1222222222222
Q ss_pred ----EEEEEecCCce--eE--------------------EEEeHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeE
Q psy8852 397 ----KLNVKLSDKKI--VN--------------------ITIDMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNV 449 (634)
Q Consensus 397 ----~i~i~~~~g~~--~~--------------------~~itr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V 449 (634)
.+.+++.+-.+ ++ ....+.+|.. +-..+++-+.+-...+++.+.+....+...
T Consensus 230 ~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~l 309 (405)
T KOG2707|consen 230 DLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQL 309 (405)
T ss_pred cccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceE
Confidence 11112211111 11 1122233331 112233444444555555555556678899
Q ss_pred EEEcCCcCcHHHHHHHHhhcc
Q psy8852 450 ILVGGSTRMKHIHEGVSNFFK 470 (634)
Q Consensus 450 iLvGG~s~~p~v~~~l~~~f~ 470 (634)
++.||-++..+|+..|+...+
T Consensus 310 V~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 310 VISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred EEcCCccchHHHHHHHHHHHH
Confidence 999999999999999998763
No 298
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.05 E-value=55 Score=30.06 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.5
Q ss_pred eEEEEEeCCceEEEEEEE
Q psy8852 134 VSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~ 151 (634)
.++|||-|++++..|+..
T Consensus 3 ~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIE 20 (164)
T ss_pred EEEEEccccCceeEEEEE
Confidence 589999999999999877
No 299
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=26.81 E-value=64 Score=35.21 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred CceEEEEEeCCceEEEEEEE
Q psy8852 132 KCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~ 151 (634)
..++|||||||..-++++++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D 21 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFD 21 (544)
T ss_pred ccEEEEEeecCCceeEEEEE
Confidence 46899999999999999998
No 300
>KOG1369|consensus
Probab=26.61 E-value=3.2e+02 Score=29.71 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=23.3
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCe
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGV 337 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~ 337 (634)
+.+.++.+|+||..+-+..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 67789999999999999999998763
No 301
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.22 E-value=1.2e+02 Score=31.95 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc
Q psy8852 421 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470 (634)
Q Consensus 421 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 470 (634)
++.....+...++++|++++++.++|+.+++-+++.++- ...+++.||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhcc
Confidence 345566677889999999999999999999999988743 333444455
No 302
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=25.15 E-value=60 Score=34.93 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.9
Q ss_pred CceEEEEEeCCceEEEEEEE-CCe
Q psy8852 132 KCVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~-~g~ 154 (634)
++++++||-|||.+++.+++ +|+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~ 27 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN 27 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC
Confidence 47899999999999998887 555
No 303
>KOG0797|consensus
Probab=25.11 E-value=23 Score=38.06 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcc------C------CcC---CCCChhhHHHHHHHHHHhHhc
Q psy8852 446 INNVILVGGSTRMKHIHEGVSNFFK------T------TLL---TSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 446 i~~ViLvGG~s~~p~v~~~l~~~f~------~------~~~---~~~~p~~ava~GAa~~a~~~~ 495 (634)
-+.|.+|||+...|.+...|++..- . .++ +..||...+=+|||+++....
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 4789999999999999999987762 1 122 237898889999999987544
No 304
>PF13941 MutL: MutL protein
Probab=25.09 E-value=1.8e+02 Score=31.61 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=30.5
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccch-hHHHHHHH
Q psy8852 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGD-DFDYCLFS 360 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~-~id~~l~~ 360 (634)
+|++|||+.+|-++++....+..++++......-=.. |+..-+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~ 47 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNN 47 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHH
Confidence 7999999999999999976777777765442222222 55444443
No 305
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=24.96 E-value=1.9e+02 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCcCc-HHHHHHHH---hhccC---CcCCCCChhhHHHHHHHHH
Q psy8852 445 DINNVILVGGSTRM-KHIHEGVS---NFFKT---TLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 445 ~i~~ViLvGG~s~~-p~v~~~l~---~~f~~---~~~~~~~p~~ava~GAa~~ 490 (634)
+++.|+++|.+-+. |..++.|. +++.. +.....+...+.|.||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 57899999998875 67788887 55532 3445678889999999875
No 306
>PTZ00288 glucokinase 1; Provisional
Probab=24.23 E-value=84 Score=33.56 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=18.4
Q ss_pred ceEEEEEeCCceEEEEEEEC
Q psy8852 133 CVSIGIDFGTTNSLVAIVRN 152 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~ 152 (634)
.+++|+|+|.|++++++++.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 68999999999999999874
No 307
>PRK13324 pantothenate kinase; Reviewed
Probab=23.76 E-value=83 Score=31.31 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=17.6
Q ss_pred EEEEEeCCceEEEEEEECCe
Q psy8852 135 SIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~ 154 (634)
++.||.|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998554
No 308
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=23.69 E-value=39 Score=36.76 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=15.0
Q ss_pred EEEEeCCceEEEEEEE
Q psy8852 136 IGIDFGTTNSLVAIVR 151 (634)
Q Consensus 136 vGID~GTt~s~va~~~ 151 (634)
+|||+|||+++++.++
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999988
No 309
>PLN02914 hexokinase
Probab=23.65 E-value=2.1e+02 Score=31.45 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.5
Q ss_pred ccceEEEEEEeCCCeEEEEEEEEeC
Q psy8852 311 IFEGIFAVYDLGGGTFDISILKFKN 335 (634)
Q Consensus 311 ~~~~~vlV~D~GggT~dvsv~~~~~ 335 (634)
.+.+.++.+|+||.++-|..+++.+
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 92 NEKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred CeeeEEEEEecCCceEEEEEEEecC
Confidence 3677899999999999999999976
No 310
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=23.38 E-value=1.9e+02 Score=23.34 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=17.6
Q ss_pred EEEEEEeCCCeEEEEEEEEeCC
Q psy8852 315 IFAVYDLGGGTFDISILKFKNG 336 (634)
Q Consensus 315 ~vlV~D~GggT~dvsv~~~~~~ 336 (634)
.+|.+|+||..+-++++.-.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC
Confidence 3789999999999998865443
No 311
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=23.31 E-value=99 Score=26.40 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHH--HHHHHhhccC
Q psy8852 426 NRTILLSSKALMDANLTIKDINNVILVGGSTRMKHI--HEGVSNFFKT 471 (634)
Q Consensus 426 ~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v--~~~l~~~f~~ 471 (634)
......++++|+++++++++|+.|..-|-++...-. .+.+.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 455677999999999999999999999877765333 3357777764
No 312
>PLN02362 hexokinase
Probab=23.28 E-value=2.5e+02 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.9
Q ss_pred ccceEEEEEEeCCCeEEEEEEEEeCC
Q psy8852 311 IFEGIFAVYDLGGGTFDISILKFKNG 336 (634)
Q Consensus 311 ~~~~~vlV~D~GggT~dvsv~~~~~~ 336 (634)
.+.+.++.+|+||.++-+..+++.++
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 92 SEIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred CcceeEEEEecCCceEEEEEEEecCC
Confidence 36778999999999999999999764
No 313
>PRK13331 pantothenate kinase; Reviewed
Probab=22.99 E-value=1e+02 Score=30.52 Aligned_cols=22 Identities=5% Similarity=-0.001 Sum_probs=19.0
Q ss_pred ceEEEEEeCCceEEEEEEECCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~ 154 (634)
..++.||.|+|+++++++++++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 4569999999999999999665
No 314
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=22.85 E-value=13 Score=33.92 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=18.8
Q ss_pred cCCCceEEEEEeCCceEEEEEEECC
Q psy8852 129 VKNKCVSIGIDFGTTNSLVAIVRNN 153 (634)
Q Consensus 129 ~p~~~~vvGID~GTt~s~va~~~~g 153 (634)
.|.-.-++|+|+||+|++++...+.
T Consensus 53 kp~~~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 53 KPVVNDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred CCCccceeccCCCcchHHHHHHhcc
Confidence 3444557999999999998876543
No 315
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=22.40 E-value=1.4e+02 Score=26.79 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=16.5
Q ss_pred eEEEEEeCCceEEEEEEE
Q psy8852 134 VSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~ 151 (634)
++++||.|+-|...++..
T Consensus 2 ii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIE 19 (143)
T ss_pred eEEEEecCCCceeEEEEE
Confidence 589999999999999888
No 316
>PLN02192 3-ketoacyl-CoA synthase
Probab=22.28 E-value=2.1e+02 Score=31.50 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC-CcCcHHHHHHHHhhccCC
Q psy8852 417 FFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGG-STRMKHIHEGVSNFFKTT 472 (634)
Q Consensus 417 ~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~v~~~l~~~f~~~ 472 (634)
+++..++...-+...++++|+++++++.+||.|++... ....|.+-.+|.+.+|.+
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 44444555555677788899999999999998876633 335899999999999865
No 317
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=22.10 E-value=1.9e+02 Score=28.51 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
+++.|+ =|++..|++.+.+++.+|..+ .-.||.+++|.=+.-
T Consensus 172 ~~d~lI--LGCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 172 LPDTVV--LGCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTAW 213 (251)
T ss_pred CCCEEE--ECcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHHH
Confidence 466664 499999999999999998654 457888887776553
No 318
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=21.89 E-value=1.1e+02 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.8
Q ss_pred EEEEEeCCceEEEEEEECCe
Q psy8852 135 SIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~ 154 (634)
++-||+|+|+++++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999998775
No 319
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.87 E-value=1.8e+02 Score=29.19 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=41.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCc-----------cceEEEEEEeCCCeEEEE
Q psy8852 262 FGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI-----------FEGIFAVYDLGGGTFDIS 329 (634)
Q Consensus 262 ~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~-----------~~~~vlV~D~GggT~dvs 329 (634)
..+|+|-- ..+.+..+.+-.-.-..|++.-+++-+|+-+|+.|+.+... +++.-|-+=+.+|||..-
T Consensus 251 ~H~VLswt-~~D~N~qk~LNrkllk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAw 328 (403)
T COG2069 251 DHVVLSWT-QMDVNMQKTLNRKLLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAW 328 (403)
T ss_pred CceEEEee-ccChHHHHHHHHHHHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchh
Confidence 45666532 22333333343444456799999999999999999876531 344445555666666544
No 320
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=21.78 E-value=92 Score=30.67 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.1
Q ss_pred EEEEeCCceEEEEEEECCe
Q psy8852 136 IGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~ 154 (634)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6899999999999999765
No 321
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=21.62 E-value=3e+02 Score=27.94 Aligned_cols=55 Identities=5% Similarity=0.087 Sum_probs=35.8
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHH
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~ 366 (634)
....++.+|+|+.++.++++......+..........-....+-+.+.+.+.+.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 58 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELL 58 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHH
Confidence 3457899999999999999988876544444433333333455566665555443
No 322
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=21.28 E-value=1.4e+02 Score=26.21 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.1
Q ss_pred EEEEEeCCceEEEEEEECCe
Q psy8852 135 SIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~ 154 (634)
+||||+|-....+++...+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 58999999999999888444
No 323
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=21.15 E-value=90 Score=30.86 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=25.2
Q ss_pred cCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCC
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGG 324 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~Ggg 324 (634)
.+++ +.+.++..|+|++...... ...++++.+-+|.|
T Consensus 96 ~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG 133 (256)
T PRK13311 96 IQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG 133 (256)
T ss_pred HCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC
Confidence 3665 5789999999987655322 24467777777765
No 324
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=20.53 E-value=3.8e+02 Score=25.86 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=29.1
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhh
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~ 306 (634)
.++.++|+ .|++---.++|+ .++++++.+..-...+|+.++
T Consensus 69 GvdaiiIa---Cf~DPgl~~~Re---~~~~PviGi~eAsv~~A~~vg 109 (230)
T COG4126 69 GVDAIIIA---CFSDPGLAAARE---RAAIPVIGICEASVLAALFVG 109 (230)
T ss_pred CCcEEEEE---ecCChHHHHHHH---HhCCCceehhHHHHHHHHHhc
Confidence 35667775 566655555554 467889999998888888775
No 325
>COG5418 Predicted secreted protein [Function unknown]
Probab=20.21 E-value=3.2e+02 Score=24.32 Aligned_cols=69 Identities=10% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCcc--eEEEEEecCCcee---EEEEeHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEc
Q psy8852 382 KSREIKELLSYQSS--VKLNVKLSDKKIV---NITIDMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVG 453 (634)
Q Consensus 382 ~~e~~K~~Ls~~~~--~~i~i~~~~g~~~---~~~itr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvG 453 (634)
.+..+++.|..++. .-+.+++.+-.-+ .-.+||++|+. -...+.+++.+.|-+.|++...+ .+ .++++|
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg~~R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k~d--~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLGWPRPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEKPD--GI-KIIFIG 104 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhCCCCCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhCcC--Cc-eEEEEe
Confidence 56677777777744 3455554221111 22578888874 34566677777777777764322 22 566776
Done!