RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8852
(634 letters)
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 755 bits (1953), Expect = 0.0
Identities = 292/523 (55%), Positives = 366/523 (69%), Gaps = 13/523 (2%)
Query: 116 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + + +++GID GTTNSLVA VR+ EVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 231
DG I VG +A+ DPKNTISS+KRF+ R L +I PY F ++ GM I+T
Sbjct: 61 EDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRT 119
Query: 232 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
G+KSP+E+SA+I L++ AE + + GAVITVPAYF+D QRQ TK+AA+LAGLNV
Sbjct: 120 AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNV 179
Query: 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGG 238
Query: 352 DDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI 410
DDFD+ L WI++ A L +L +D +L+ +R KE LS SV+++V L
Sbjct: 239 DDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG----- 293
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V FF
Sbjct: 294 EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG 353
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 530
T LTSIDPDK V GAAIQA+ L+GN+ D + LLLDVIPLSLG+ET+GGLVEKII RN
Sbjct: 354 RTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPLSLGLETMGGLVEKIIPRN 412
Query: 531 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 590
TTIP + + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VT
Sbjct: 413 TTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472
Query: 591 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+QVDADGLLS+ A EK +G + I +KP Y + DEI LKD
Sbjct: 473 FQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKD 515
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 682 bits (1762), Expect = 0.0
Identities = 271/501 (54%), Positives = 356/501 (71%), Gaps = 6/501 (1%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNSLVA VR+ +PEVL D G L+PS+VRYL DG + VGK+A DPKN
Sbjct: 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKN 61
Query: 196 TISSIKRFIARDLKNINTNS-FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 253
TISS+KR + R +++I T S PY F M+ ++T+ G +P+E+SA+I LK+ A
Sbjct: 62 TISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRA 121
Query: 254 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 313
E ++ + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK E
Sbjct: 122 EESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS-E 180
Query: 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLS 372
GI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD+ L WI+K + L+
Sbjct: 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLN 240
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
+D +L+ +R KE L+ SV+++ L K + +F + Q LV +T+ +
Sbjct: 241 PEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFK-GKLTRDEFEALIQPLVQKTLSIC 299
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492
+AL DA L++++I V+LVGGSTRM + V+ F LT IDPD+ V GAAIQA+
Sbjct: 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359
Query: 493 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 552
L+GNR I ++ LLLDV PLSLGIET+GGLVEKII RNT IP + + EFTT+KD QTA+
Sbjct: 360 LLAGNR-IGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV 418
Query: 553 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 612
I VVQGE ELV++C+ LA FELR IPPM AG ARI+VT+QVDADGLL++ A E+ +G ++
Sbjct: 419 IHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQ 478
Query: 613 FITIKPFYNMNLDEIKSNLKD 633
I +KP Y ++ +EI+ LKD
Sbjct: 479 SIQVKPSYGLSDEEIERMLKD 499
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 488 bits (1259), Expect = e-166
Identities = 222/514 (43%), Positives = 312/514 (60%), Gaps = 19/514 (3%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ PEV+ + G PS+V + P + VG+ AK +PKN
Sbjct: 2 IGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKER-LVGQAAKRQAVTNPKN 60
Query: 196 TISSIKRFIARDLKNINTNS----FPYDFQ---NKFGMLHIKTISGIKSPIEISAQIFIT 248
T+ S+KR I R + PY N + ++ + +P +ISA +
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQK 120
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY LD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 309 KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 368
K E V+DLGGGTFD+SIL+ +GVF+VL+ GD++LGG+DFD L V+ F
Sbjct: 181 KKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE-FK 239
Query: 369 KK----LSYKDVNILMIKSREIK---ELLSYQSSVKLNVK--LSDKKIVNITIDMKQFFT 419
KK LS + ++ K EL S Q+ + L ++D K V+ T+ +F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEE 299
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+ L RT+ KAL DA L+ +I+ V+LVGGSTR+ + E V FF ++P
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 480 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 539
D+AV GAA+QA LSG + D LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKD-VLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 540 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 599
F+T DNQTA+ I+V QGE E+ + ++L +FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGIL 478
Query: 600 SIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
++ A +K +GK++ ITI ++ DEI+ +KD
Sbjct: 479 TVSAKDKGTGKEQKITITASSGLSDDEIERMVKD 512
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 476 bits (1226), Expect = e-162
Identities = 224/505 (44%), Positives = 306/505 (60%), Gaps = 25/505 (4%)
Query: 136 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
IGID GTTNS+VA++R +P+V+++ G L PS+V + +G++ VG+ AK +P+
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPE 67
Query: 195 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
NTI SIKR I R N + K +P EISA I LK+ AE
Sbjct: 68 NTIFSIKRKIGR---GSNGLKISVEVDGK-----------KYTPEEISAMILTKLKEDAE 113
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314
+ ++ AVITVPAYFND QRQ TK+AA++AGLNVLRL+NEPT+AA+AY LDK E
Sbjct: 114 AYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EK 172
Query: 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS-- 372
VYDLGGGTFD+S+L+ +GVF+VL+ GGD++LGGDDFD L ++V K
Sbjct: 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDL 232
Query: 373 ---YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 428
+ L + + K LS + +N+ + + + +F + L+ RT
Sbjct: 233 RSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292
Query: 429 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 488
I +AL DA L DI+ VILVGGSTR+ + E V FF SI+PD+AV GAA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAA 352
Query: 489 IQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQ 548
IQA LSG + LLLDVIPLSLGIET+GG+ II RNTTIP S EF+T D Q
Sbjct: 353 IQAAVLSGE---VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQ 409
Query: 549 TAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKIS 608
TA+AI V QGE E+ + + L FEL IPP P G +I+VT+ +DA+G+L++ A + +
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGT 469
Query: 609 GKKKFITIKPFYNMNLDEIKSNLKD 633
GK++ ITIK ++ +EI+ ++D
Sbjct: 470 GKEQSITIKASSGLSDEEIERMVED 494
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 448 bits (1155), Expect = e-151
Identities = 223/513 (43%), Positives = 309/513 (60%), Gaps = 21/513 (4%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P V+ + G PS+V + +G+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPEN 62
Query: 196 TISSIKRFIARDLKNI--NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 253
TI SIKRF+ R + PY G + +K +P EISA I LKK A
Sbjct: 63 TIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDA 122
Query: 254 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 313
E + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK+ +
Sbjct: 123 EAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKD 182
Query: 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 370
V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + W+ F K+
Sbjct: 183 EKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE-FKKEEGI 241
Query: 371 -LSYKDVNILMIKSREIKEL----LSYQSSVKLN-----VKLSDKKIVNITIDMKQFFTI 420
LS KD + + + +E E LS S ++N S K + +T+ +F +
Sbjct: 242 DLS-KD-KMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEEL 299
Query: 421 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPD 480
T LV RT +AL DA L+ DI+ VILVGGSTR+ + E V +FF S++PD
Sbjct: 300 TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPD 359
Query: 481 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 540
+ V GAAIQ L G+ + LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 EVVAIGAAIQGGVLKGDVK---DVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 416
Query: 541 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 600
F+T DNQ A+ I V+QGE + + + L FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 417 FSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476
Query: 601 IFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ A +K +GK++ ITI ++ +EI+ +K+
Sbjct: 477 VSAKDKGTGKEQSITITASSGLSEEEIERMVKE 509
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 438 bits (1130), Expect = e-151
Identities = 180/362 (49%), Positives = 237/362 (65%), Gaps = 10/362 (2%)
Query: 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 193
++IGID GTTNSLVA V + ++L D+ G L+PS+V Y DG I VG A DP
Sbjct: 1 LAIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDP 59
Query: 194 KNTISSIKRFIARDLKNINTNSF--PYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 251
KNTISS+KR + + +++I + P G++ T G +P+E+SA+I LK+
Sbjct: 60 KNTISSVKRLMGKSIEDIKKSFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKALKE 119
Query: 252 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 311
AE ++ I GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK
Sbjct: 120 RAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK 179
Query: 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 371
EGI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD L ++K LK L
Sbjct: 180 -EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 372 -SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 430
S +D L++ +R+ KE LS V++ + D K TI ++F + LV +T+
Sbjct: 239 ISDEDQAELLLIARKAKEALSGAEEVEVRGQ--DFK---CTITREEFEKLIDPLVKKTLN 293
Query: 431 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490
+ +AL DA L++KDI VILVGGSTR+ + E VS FF L I+PD+ V GAA+Q
Sbjct: 294 ICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
Query: 491 AN 492
AN
Sbjct: 354 AN 355
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 444 bits (1144), Expect = e-149
Identities = 227/520 (43%), Positives = 313/520 (60%), Gaps = 35/520 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK---ITQNID 192
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG+ AK +T +
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT---N 61
Query: 193 PKNTISSIKRFIARDLKNIN--TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIFITL 249
P+NTI SIKR + R + + PY I G K +P EISA I L
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 250 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 309
KK AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 310 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369
E I VYDLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + ++ F K
Sbjct: 182 KGDEKI-LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKK 239
Query: 370 K----LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITID 413
+ L KD + + + +E EL S Q + + L S K + I +
Sbjct: 240 ENGIDLR-KDK-MALQRLKEAAEKAKIELSSAQQT---EINLPFITADASGPKHLEIKLT 294
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F +T+ LV RTI +AL DA L++ DI+ VILVGGSTRM + E V FF
Sbjct: 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEP 354
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
++PD+ V GAAIQ L+G+ + LLLDV PLSLGIET+GG++ K+I RNTTI
Sbjct: 355 NKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLGGVMTKLIERNTTI 411
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P S F+T DNQ A+ I V+QGE E+ + + L F L IPP P G +I+VT+ +
Sbjct: 412 PTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDI 471
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DA+G++ + A +K +GK++ ITI ++ +EI+ +KD
Sbjct: 472 DANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKD 511
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 398 bits (1024), Expect = e-131
Identities = 205/496 (41%), Positives = 295/496 (59%), Gaps = 19/496 (3%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P V+ + G PSIV + G VG+ AK + +N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 196 TISSIKRFIAR--DLKNINTNSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 252
T+ SIKRFI R D + PY + + ++++ +P EISA I LK+
Sbjct: 65 TVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Query: 253 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 312
AE + + AVITVPAYF D QRQ TK+A +AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQ 184
Query: 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-- 370
E + V+DLGGGTFD+SIL+ +GVF+V + G+++LGGDDFD C+ W+V+N F ++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN-FQQQEG 243
Query: 371 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFTIT 421
LS + + ++ K + S + ++ L + K + + + +F +T
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPD 480
+ LV TI +AL DA L +DI+ VILVGGSTR+ + E + FF S++PD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 481 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 540
+AV GAAIQA L G + LLLDV PLSLGIET+G + KII RNTTIP S S
Sbjct: 364 EAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQV 420
Query: 541 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 600
F+T D QT++ I V+QGE + K+ + L F L IPP P G +I+V++++D +G+L
Sbjct: 421 FSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480
Query: 601 IFAYEKISGKKKFITI 616
+ A ++ +G+++ I I
Sbjct: 481 VSAQDQGTGREQSIRI 496
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 389 bits (1002), Expect = e-128
Identities = 223/524 (42%), Positives = 314/524 (59%), Gaps = 41/524 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS+VA++ P V+ + G+ PSIV Y G + VG+ AK I+P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 196 TISSIKRFIARDLKNINTNS--FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITL 249
T S+KRFI R I+ + Y + +IK SP EISAQ+ L
Sbjct: 65 TFYSVKRFIGRKFSEISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQV---L 120
Query: 250 KKIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+ E+A + + AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+A++AY
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 307 LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366
LDK E I V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + +W++K
Sbjct: 181 LDKKNNETIL-VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE- 238
Query: 367 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----------------KKIVN 409
F KK I + K R+ + L+ +++ K ++LS+ K +
Sbjct: 239 FKKK-----EGIDLSKDRQALQRLT-EAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
T+ +F + L+NR + AL DA L DI+ V+LVGGSTR+ I E V
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 470 KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 529
S++PD+ V GAA+QA L+G + D LLLDV PLSLG+ET+GG++ KII R
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKD-ILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 530 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 589
NTTIP S F+T DNQT + I V+QGE EL K+ + L F L IPP P G +I+V
Sbjct: 410 NTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469
Query: 590 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
T+ +DA+G+LS+ A +K +GK++ ITI+ + DE++ +K+
Sbjct: 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKE 513
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 384 bits (988), Expect = e-125
Identities = 199/524 (37%), Positives = 321/524 (61%), Gaps = 41/524 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS+VA++ P V+ + G PS+V + DG++ VG+ A+ ++P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS--FPYDFQ-NKFGMLHIKTISGIK--SPIEISAQIFITLK 250
T ++KRFI R ++ S PY + N+ G + IK + +P E+SA I L+
Sbjct: 65 TFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI---LR 121
Query: 251 KIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K+A++A + + GAVITVPAYFND QRQ T++A ++AGL V R+LNEPT+AA+AY L
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367
D++ + + V+DLGGGTFD+S+L+ NGVF+V + GD+ LGG+DFD + W+ F
Sbjct: 182 DRSSSQTVL-VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA-EQF 239
Query: 368 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------------- 410
L+K I + + R+ + L+ +++ K ++LS + +I
Sbjct: 240 LEK-----EGIDLRRDRQALQRLT-EAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+D KQF ++ L++R + +AL DA L+ +DI+ V+LVGGSTRM + + V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLSGN-RGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 529
+++PD+ V GAAIQA L+G + + LLLDV PLSLG+ETIGG+++K+I R
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDL----LLLDVTPLSLGLETIGGVMKKLIPR 409
Query: 530 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 589
NTTIP S F+T ++NQ+++ I V QGE E+ + + L F+L IPP P G +++V
Sbjct: 410 NTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469
Query: 590 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ +DA+G+L + A ++ +G+++ +TI+ ++ E+ +++
Sbjct: 470 AFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQE 513
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 377 bits (970), Expect = e-123
Identities = 212/536 (39%), Positives = 304/536 (56%), Gaps = 61/536 (11%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
M +++I EP+ K + +++GIDFGTTNSL+AI N +V+K LIP+ + +
Sbjct: 1 MQIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFT 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI----------------NTNSFPY 218
+ I + SIKR + LK I N++
Sbjct: 61 SNNFT-----------IGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109
Query: 219 DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 278
+F NK + EI+A+IFI LK AE + I AVITVPA+FND R
Sbjct: 110 NFANK-------QLR----IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARG 158
Query: 279 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 338
AAK+AG VLRL+ EPT+AA AY L+KN +G + VYDLGGGTFD+SIL + G+F
Sbjct: 159 EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIF 217
Query: 339 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 398
+V++ GD+ LGG+D D ++ K + + +++ KE L+Y+ S
Sbjct: 218 QVIATNGDNMLGGNDIDV-----VITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNN 272
Query: 399 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 458
+ NI+I+ + + LV RTI ++ + L A +I+ VILVGG+TR+
Sbjct: 273 D---------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRI 321
Query: 459 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA-NFLSGNRGIDDNFLLLDVIPLSLGIE 517
I + + FK +L+ IDPDKAVV+GAA+QA N ++ + N LL+DV+PLSLG+E
Sbjct: 322 PLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT----NSLLIDVVPLSLGME 377
Query: 518 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDI 577
GG+VEKII RNT IP S EFTT+ DNQT I ++QGE E+ +C+ LA FEL+ +
Sbjct: 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGL 437
Query: 578 PPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
PPM AG R +VT+ +DADG+LS+ AYEKIS I +KP + ++ EI L++
Sbjct: 438 PPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLEN 493
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 376 bits (967), Expect = e-122
Identities = 212/514 (41%), Positives = 311/514 (60%), Gaps = 21/514 (4%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS VAI+ + P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 196 TISSIKRFIARDLKNINT----NSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ + KR I R T PY + G I+ SP +I A + +K
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMK 163
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
+ AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL+VLR++NEPT+AA+A+ +DKN
Sbjct: 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN 223
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
+ I AVYDLGGGTFDISIL+ GVF+V + G+++LGG+DFD + ++++ F K+
Sbjct: 224 DGKTI-AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-FKKQ 281
Query: 371 --LSYKDVNILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITIDMKQFFT 419
+ K + + + RE E LS ++ ++N+ S K + I + +
Sbjct: 282 QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+T L+ +TI K + DA + ++N+VILVGG TRM + E V F ++P
Sbjct: 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNP 401
Query: 480 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 539
D+AV GAAIQA L G I D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAMGAAIQAGVLKGE--IKD-LLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 540 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 599
F+T DNQT + IKV QGE E+ + ++L F+L IPP P G +I+VT+ VDA+G++
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 600 SIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+I A +K +GKK+ ITI+ ++ +EI+ +K+
Sbjct: 519 NISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKE 552
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 373 bits (958), Expect = e-120
Identities = 205/520 (39%), Positives = 304/520 (58%), Gaps = 33/520 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS VA + P ++ + G PS+V Y +G VG+ AK ++P+N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 196 TISSIKRFIARDLKNINTNS--FPYDF---QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T S+KRFI R + ++ S Y +N L I + EISAQ+ L
Sbjct: 102 TFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 161
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
A +N+++ AVITVPAYFND QR TK+A ++AGL VLR++NEPT+A++AY +K
Sbjct: 162 DDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK 221
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
E I V+DLGGGTFD+S+L+ +GVF+VLS GD++LGGDDFD + W+ N
Sbjct: 222 SNETIL-VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF---- 276
Query: 371 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------------TID 413
KD I ++K ++ + L+ +++ K ++LS +I T+
Sbjct: 277 --KKDEGIDLLKDKQALQRLT-EAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F + L++R AL DA L+ KDI+ VILVGGSTR+ + E V
Sbjct: 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDP 393
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
+++PD+ V GAA+QA L+G + +LLDV PLSLG+ET+GG++ KII RNTT+
Sbjct: 394 NVTVNPDEVVALGAAVQAGVLAGEVS---DIVLLDVTPLSLGLETLGGVMTKIIPRNTTL 450
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P S S F+T D QT++ I V+QGE E V++ + L +F L IPP P G +I+V + +
Sbjct: 451 PTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 510
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DA+G+LS+ A +K +GKK+ ITI + DE++ +++
Sbjct: 511 DANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQE 550
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 349 bits (898), Expect = e-115
Identities = 147/368 (39%), Positives = 209/368 (56%), Gaps = 12/368 (3%)
Query: 136 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
IGID GTTNS VA V N PE++ + G PS+V + DG++ VG+ AK +P+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 195 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITLK 250
NT+ KR I R + S G I + SP E+SA I LK
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLK 120
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-K 309
+ AE + + AVITVPAYFND QR+ TK AA++AGLNV+RL+NEPT+AA+AY LD K
Sbjct: 121 EDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 310 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369
+ V+DLGGGTFD+S+++ + GVF+VL+ GGD++LGGDDFD L ++ + K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 370 -----KLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQH 423
+L + + L + + K LS + + L + + + ++F + +
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 424 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483
L+ RTI L + L DA L +DI+ V+LVGGS+R+ + E + F L SIDPD+AV
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAV 360
Query: 484 VFGAAIQA 491
GAAI A
Sbjct: 361 ALGAAIYA 368
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 355 bits (911), Expect = e-114
Identities = 200/521 (38%), Positives = 308/521 (59%), Gaps = 35/521 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IG+D GTT S VA + + VL++ G+ PS+V + K+ VG AK +P++
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQS 88
Query: 196 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIK-SPIEISAQ 244
T ++KR I R D+KN+ PY + G ++ +G + SP +I A
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNV-----PYKIVRAGNGDAWVQDGNGKQYSPSQIGAF 143
Query: 245 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304
+ +K+ AEN + +++ AV+T PAYFND QRQ TK+A +AGLNV+R++NEPT+AA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 305 YKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
Y +DK + + AVYDLGGGTFDIS+L+ GVF+V + GD++LGG+DFD L +I++
Sbjct: 204 YGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 365 NAFLKKLSYKDVN---ILMIKSREIKELLSYQSSVKLNVKLSDKKI---------VNITI 412
+K S D++ + + + RE E + S + +++ I + + I
Sbjct: 263 E--FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHI 320
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+F ITQ L+ R+I + + DA + +K+IN+V+LVGG TRM + E V FF+
Sbjct: 321 SRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380
Query: 473 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 532
++PD+AV GAA L RG +LLDV PLSLGIET+GG+ ++I +NTT
Sbjct: 381 PFRGVNPDEAVALGAATLGGVL---RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTT 437
Query: 533 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592
IP S F+T DNQT + IKV QGE E+ + Q++ F+L IPP P G +I+VT+
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 593 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+DA+G+ + A +K +GK + ITI ++ ++I+ ++D
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRD 538
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 342 bits (879), Expect = e-109
Identities = 195/508 (38%), Positives = 294/508 (57%), Gaps = 34/508 (6%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + +N E++ + G PS V + D + +G AK +P+
Sbjct: 6 AIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVARNPE 64
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFG---MLHIKTISGIKS--PIEISAQI 245
NT+ KR I R + S +P+ M+ + K+ P EIS+ +
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 246 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
+K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 306 KLDK------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359
LDK N+ ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L
Sbjct: 185 GLDKKGDGEKNVL-----IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239
Query: 360 SWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLS--YQSSVKLNVKLSDKKIVNI 410
+ V++ F +K KD++ L + K LS Q++++++ L + N+
Sbjct: 240 EFCVQD-FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID-SLFEGIDYNV 297
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
TI +F + T+ K L DA + + ++ V+LVGGSTR+ + + +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 471 -TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGIETIGGLVEKIIF 528
SI+PD+AV +GAA+QA L+G + + LLLDV PLSLG+ET GG++ K+I
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
RNTTIP S FTT+ DNQ + I+V +GE + K+ +L F L IPP P G +I+
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITI 616
VT+ +DA+G+L++ A +K +GK ITI
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITI 505
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 312 bits (801), Expect = e-101
Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 19/375 (5%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P V+ + G PS+V + G+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPEN 64
Query: 196 TISSIKRFIAR---DLKNINTNSFPY-DFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 251
TI SIKRF+ R +++ + + + I + +P EISA I LK+
Sbjct: 65 TIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKE 124
Query: 252 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 311
AE + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 DAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKG 184
Query: 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 370
E I VYDLGGGTFD+SIL+ +GVF+VL+ GD++LGGDDFD + W+V+ F K+
Sbjct: 185 NEKI-LVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE-FKKEE 242
Query: 371 ---LSYKDVNILM-IK--SREIKELLSYQSSVKLN-----VKLSDKKIVNITIDMKQFFT 419
L KD L +K + + K LS + ++N + K + +T+ +F
Sbjct: 243 GIDLR-KDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+T+ LV RTI +AL DA L+ DI+ VILVGGSTR+ + E V F ++P
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 480 DKAVVFGAAIQANFL 494
D+ V GAAIQ L
Sbjct: 362 DEVVAIGAAIQGGVL 376
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 302 bits (775), Expect = 1e-97
Identities = 138/359 (38%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNSLVA+ ++ ++ + G +L PS+V DG+I VGK A+ P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 196 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
T +S KRF+ D K + F E+S+ + +LK+ AE
Sbjct: 61 TAASFKRFMGTDKKYRLGKREF--------------------RAEELSSLVLRSLKEDAE 100
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314
+ + AVI+VPAYFND QR+ TK A +LAGL V RL+NEPT+AA+AY L E
Sbjct: 101 AYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEET 160
Query: 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK--KLS 372
F V+DLGGGTFD+S+L+ +GV +V + GD+ LGG+DF L +K L KL
Sbjct: 161 KFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDFEKLD 220
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
++ L+ + K LS Q +++V++ + + T+ ++F I Q L+ R
Sbjct: 221 PSELARLLRAAERAKRALSDQEEAEMSVRIEG-EELEYTLTREEFEEICQPLLERLRQPI 279
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491
+AL DA L DI+ +ILVGG+TRM + + VS F L ++PD+ V GAAIQA
Sbjct: 280 ERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQA 338
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 292 bits (749), Expect = 3e-93
Identities = 156/381 (40%), Positives = 215/381 (56%), Gaps = 30/381 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPEN 64
Query: 196 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQI 245
T+ + KR I R D+KN+ PY + G ++ SP +I A +
Sbjct: 65 TLYATKRLIGRRFDDPEVQKDIKNV-----PYKIVKASNGDAWVEAHGKKYSPSQIGAFV 119
Query: 246 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
+ +K+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 306 KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + + AVYDLGGGTFDISIL+ + GVF+V S GD+ LGG+DFD L +VK
Sbjct: 180 GLDKKD-DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKE 238
Query: 366 AFLKKLSYKDV---NILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITID 413
KK D+ N+ + + RE E LS +N+ S K +N+ +
Sbjct: 239 --FKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLT 296
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F ++ L+ RTI KAL DA ++ DI VILVGG TRM + E V F
Sbjct: 297 RAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEP 356
Query: 474 LTSIDPDKAVVFGAAIQANFL 494
++PD+AV GAAIQ L
Sbjct: 357 SKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 284 bits (728), Expect = 2e-90
Identities = 155/371 (41%), Positives = 209/371 (56%), Gaps = 14/371 (3%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P ++++ G PSIV + G I VG+ AK + + P+N
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTG-ILVGEAAKRQEALHPEN 63
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKF-----GMLHIKTISGIKSPIEISAQIFITLK 250
T + KR I R K++ K G I T SP +I++ + LK
Sbjct: 64 TFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLK 123
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE + R+ AVITVPAYFND QRQ TK+A LAGL VLR++NEPT+AA+AY +DK
Sbjct: 124 KTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKR 183
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
AVYDLGGGTFDISIL ++GVF+V + GD+ LGG+DFD + +I+K F +K
Sbjct: 184 KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE-FKRK 242
Query: 371 ----LSYKDVNILMIK--SREIKELLSYQSSVKLNVKLSDK-KIVNITIDMKQFFTITQH 423
L+ I IK + + K LS + + D K + ITI ++F + +
Sbjct: 243 YKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKS 302
Query: 424 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483
+ RTI + L DA L KDI+ VILVGG TRM +I V F S++PD+AV
Sbjct: 303 ICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAV 362
Query: 484 VFGAAIQANFL 494
GAAIQ + L
Sbjct: 363 ALGAAIQGSIL 373
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 264 bits (678), Expect = 9e-83
Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 30/378 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTT S V + +N E++ + G + PS V + DG+ +G AK +P+N
Sbjct: 4 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPEN 62
Query: 196 TISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIKT-ISGIK---SPIEIS 242
TI +KR I R D+K PY NK G +I+ + G K SP EIS
Sbjct: 63 TIFDVKRLIGRKFDDKEVQKDIKL-----LPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
A + +K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AA
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAA 177
Query: 303 IAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
IAY LDK E V+DLGGGTFD+S+L NGVF+VL+ GD++LGG+DFD +
Sbjct: 178 IAYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 363 VKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITIDM 414
+K KK KD+ + K RE+ K LS Q ++ ++ L D + + T+
Sbjct: 238 IK--LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTR 295
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L +T+ K L DA+L DI+ ++LVGGSTR+ + + + FF
Sbjct: 296 AKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEP 355
Query: 475 T-SIDPDKAVVFGAAIQA 491
+ I+PD+AV +GAA+QA
Sbjct: 356 SRGINPDEAVAYGAAVQA 373
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 229 bits (585), Expect = 3e-69
Identities = 141/378 (37%), Positives = 209/378 (55%), Gaps = 19/378 (5%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + ++ E++ + G PS V + ++ +G AK ++P
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPT 59
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHI----KTISGIKSPIEISAQIF 246
NT+ KR I R + S +P+ N G I K + P EIS+ +
Sbjct: 60 NTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 307 LDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV-- 363
LDK E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 364 -KNAFLKKLS--YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQFF 418
K K +S + + L K LS Q+S++++ L + +I +F
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID-SLFEGIDFYTSITRARFE 298
Query: 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSI 477
+ L T+ K L DA L I++++LVGGSTR+ + + + +FF L SI
Sbjct: 299 ELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 358
Query: 478 DPDKAVVFGAAIQANFLS 495
+PD+AV +GAA+QA LS
Sbjct: 359 NPDEAVAYGAAVQAAILS 376
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 217 bits (554), Expect = 3e-64
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 26/384 (6%)
Query: 136 IGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 193
IGID GTT S V + + +++ D+ G IPS+V + P + VG KA +P
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEHNP 81
Query: 194 KNTISSIKRFIARDL------KNINTNSFPYDFQNKFGMLHIK-TISGIK--SPIEISAQ 244
+NTI KRFI + + F ++ G + K +P EI ++
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 245 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304
+ + L+K+AE + + AVI+VPA F++ QR T AA LAGL VLR++NEPT+AA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 305 YKLDKNIFEGIF--AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
Y L K + +F V DLGGGT D+S+L + G+F ++ G++ LGG DF+ L ++
Sbjct: 202 YGLHKK--QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 363 ---VKNAFLKKLSYK-DVNILMIKSREIKELLSYQSSVKLNVKL----SDKKIV--NITI 412
+ + K K D+ L K L+ S +++ L + IV +
Sbjct: 260 YQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYEL 319
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+F T+ + L + +L L + +L ++++ ++LVGGSTR+ I + + FF
Sbjct: 320 TRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKD 379
Query: 473 LLTSIDPDKAVVFGAAIQANFLSG 496
TS+DP+ AVV G AIQA + G
Sbjct: 380 PNTSVDPELAVVTGVAIQAGIIGG 403
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 195 bits (497), Expect = 3e-56
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 43/391 (10%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GIDFG NS+VA+ R +V+ ++Y PS+V + + +G+ AK + KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQR-LIGEAAKNQAISNFKN 61
Query: 196 TISSIKRFIARDLKN----INTNSFPYDFQ---NKFGMLHIKTISGIK--SPIEISAQIF 246
T+ + KR I R + P+ + + + + K SP ++ A +
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
LK+IAE A+ ++ VI+VP+YF D QR+ +AA++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY- 180
Query: 307 LDKNIFEGIF-------------AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
GI+ A D+G + +SI+ F G KVLS D NLGG D
Sbjct: 181 -------GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRD 233
Query: 354 FDYCLFSWIVKNAFLKKLSYK-DVNI-------LMIKSREIKELLSYQSSVKLNVK-LSD 404
FD LF K F +K YK DV L+ ++K++LS + LN++ L +
Sbjct: 234 FDEALFEHFAKE-FKEK--YKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 405 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 464
K V+ I ++F + L+ R KAL +A LT +DI++V +VGGSTR+ + E
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 465 VSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 495
++ F L T+++ D+AV G A+Q LS
Sbjct: 351 IAKVFGKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 175 bits (446), Expect = 3e-49
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IG+ FG T++ +A+ ++ +V+ + G + P++V + I VG AK + +
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAA 60
Query: 195 NTISSIKRFIAR----DLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIF 246
NTI K+ + R K K G + + K SP E++ IF
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IA++A+ + VITVP YF++ Q+ + AA+ AG NVLR+++EP++AA+AY
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 307 LDKNIFEG--IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
+ ++ G VY LGG + D++IL+ +G+++VL+ D NLGG+ F S +
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFT-ETLSQYLA 239
Query: 365 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQF 417
N F +K + + + L + K++LS S V+ L + ++ +F
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARF 299
Query: 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTS 476
++ L + + K L ANLT DIN V+L GGS+R+ + + + + F + +L S
Sbjct: 300 ESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNS 359
Query: 477 IDPDKAVVFGAAIQA 491
I PD+ + GAA QA
Sbjct: 360 ISPDEVIAIGAAKQA 374
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 160 bits (407), Expect = 1e-43
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 35/389 (8%)
Query: 136 IGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+GID G+ VA+V+ +P E++ ++ PS V + +++ G A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 195 NTISSIKRFIARDLKNIN----TNSFPYDF---QNKFGMLHIKTISGIK-SPIEISAQIF 246
+K + + + + + P + G + K G + S E+ A I
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 247 ITLKKIAENAVNNR-IFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
KK+AE + VITVP YF QRQ +AA+LAGLNVL L+N+ T+AA+ Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 306 KLDKNIFEG---IFAVYDLGGGTFDISILKFKN----------GVFKVLSVGGDSNLGGD 352
LD+ YD+G G+ ++++F +VL VG D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 353 DFDYCLFSWIVKNAFLKKLSYKDVNI--------LMIKSREIKELLSYQSSVKLNVK-LS 403
+FD L + F +K K L+ ++ KE+LS S ++++ L
Sbjct: 240 EFDLRLAD-HLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLY 298
Query: 404 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHE 463
D I +F + L R + KAL A LT+KDI++V L+GG+TR+ + E
Sbjct: 299 DDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQE 358
Query: 464 GVSNFFKT-TLLTSIDPDKAVVFGAAIQA 491
+S L ++ D+A GAA A
Sbjct: 359 ELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 149 bits (378), Expect = 1e-39
Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 39/390 (10%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DP 193
IGI+FG T S +A + +V+ ++ G IPS + Y + Y G +AK Q I +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAK-AQLIRNA 59
Query: 194 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----------SPIEISA 243
KNTI++ + + + I+ ++ ++ + K + E++
Sbjct: 60 KNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTV 119
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ LK+ AE+ + ++ GAV++VP +F+D Q + AA+ AGL VL+L+ EP +A +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 304 AYKLDKN----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359
AY + + V D GG D+S++ + G++ +L+ D LGGD D L
Sbjct: 180 AYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALV 239
Query: 360 SWIVKNAFLKKLSYKDVNI---------LMIKSREIKELLSYQSSVKLNVK-LSDKKIVN 409
K F KK K + L +S K+ LS +S +V+ L++ +
Sbjct: 240 KHFAKE-FTKK--TK-TDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFH 295
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
+I+ +F + + + + A+ A L DI+ V+LVGG+ + +S F
Sbjct: 296 SSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF 355
Query: 470 --KTTLLTSI------DPDKAVVFGAAIQA 491
TT+ I DP + V G AIQA
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQA 385
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 148 bits (376), Expect = 2e-39
Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 23/382 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+G D G + +A+ R E + +++ PS++ + + +G AK Q N
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANN 61
Query: 196 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 246
T+S+ KRF R + + YD K G + +K + + S +I+A +
Sbjct: 62 TVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
LK+ AEN + + VI+VP++F D +R+ +AA++ GLN LRL+N+ T+ A+ Y
Sbjct: 122 TKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYG 181
Query: 307 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL-- 358
+ K I D+G F +S F G KVL D LGG +FD L
Sbjct: 182 IYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 241
Query: 359 -FSWIVKNAFLKKLSYKDVNILMI--KSREIKELLSYQSS-VKLNVK-LSDKKIVNITID 413
F K + K +L + + ++K+L+S S+ + LN++ + K V+ ++
Sbjct: 242 HFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMN 301
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
QF + L+ R + L +L ++D++ V +VGG+TR+ + E ++ FF +
Sbjct: 302 RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDV 361
Query: 474 LTSIDPDKAVVFGAAIQANFLS 495
T+++ D+AV G A+Q LS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 148 bits (374), Expect = 3e-39
Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 59
Query: 196 TISSIKRFIARDLKNIN--------TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIF 246
T++++KR I D + + T+ K G S +++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 307 LDK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 360
+ K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 361 WIV-----KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDM 414
K + + K N ++ + ++K++LS ++ +V+ + + V+ +
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSR 299
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 475 TSIDPDKAVVFGAAIQA 491
T+++ D+A+ GAA
Sbjct: 360 TTLNQDEAIAKGAAFIC 376
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 142 bits (359), Expect = 3e-37
Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID G + VA+ R E + ++Y P+ + + P + +G AK + KN
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNR-SIGAAAKSQVISNAKN 61
Query: 196 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 246
T+ KRF R + S YD Q G IK + + +++A +
Sbjct: 62 TVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
LK+ AE+A+ + V++VP ++ D +R+ +A ++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYG 181
Query: 307 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 360
+ K D+G + +S+ F G KVL+ D+ LGG FD L +
Sbjct: 182 IYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVN 241
Query: 361 WIVKNAFLKKLSYKDVNILMIKSR------------EIKELLSYQSS-VKLNVKLSDKKI 407
+ + F KK YK L IKS+ ++K+L+S +S + LN++ I
Sbjct: 242 YFCEE-FGKK--YK----LDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 408 -VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 466
V+ T++ +F + L+ R L A L +DI V +VGG+TR+ + E +S
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 467 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 495
FF + T+++ D+AV G A+Q LS
Sbjct: 355 KFFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 133 bits (335), Expect = 6e-34
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 29/385 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID G N +A+ R+ E + ++Y P+ + L +G AK + +N
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACIS-LGSRTRAIGNAAKSQIVTNVRN 61
Query: 196 TISSIKRFIARDLKN--INTN--SFPYDFQN--------KFGMLHIKTISGIKSPIEISA 243
TI K+ R + + T PY+ Q K L + I+ +++
Sbjct: 62 TIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE---QVTG 118
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ LK+ +ENA+ + VI++P++F D +R+ AA++AGLN LRL+NE T+ A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 304 AYKLDKNIFEGI------FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 357
AY + K + D+G + +S+ F G KVL+ D LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 358 LFSWIVKNAFLK-KLSYKDVNILMIK----SREIKELLSYQSS-VKLNVK-LSDKKIVNI 410
L + K K++ K+ + +++ ++K+L+S +S + LN++ + V+
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
++ QF + L+ R + ANL +DI ++ +VGG+TR+ + E +++FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLS 495
+ T+++ D+AV G A+Q LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 107 bits (268), Expect = 8e-27
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
++F F LP F +D LD Y Q ++HPD F ++ +++ +T N+AY L
Sbjct: 7 DHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTL 66
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 119
+DP R+ YL L G+D+ + N FL QQM+WRE + + +D ALL
Sbjct: 67 RDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARAARDVDALDALL 123
>gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 99.0 bits (247), Expect = 5e-24
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M N F F+LP F +D LL + Y QK +HPDNF S +Q +++ S +N A
Sbjct: 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQ 60
Query: 61 ILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 119
ILKDP LR+ + LN G N + FL QQM+WRE L I+ ++D+ A
Sbjct: 61 ILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDALTAFS 120
Query: 120 Q 120
+
Sbjct: 121 K 121
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 96.1 bits (240), Expect = 4e-23
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP ++ID LL Y Q++ HPD F S+ ++ +V+ + +N AY L
Sbjct: 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL 61
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSH---D--FLEQQMKWRETLSIIKNKKD 111
K P R+ YL L+G DL + H D FL +QM+ RE L I+ KD
Sbjct: 62 KHPLKRAEYLLSLHGFDLA-----HEQHTVRDTAFLMEQMELREELEDIEQSKD 110
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 90.9 bits (226), Expect = 3e-21
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+ F F LP+ F ID+D L Y Q+ HPD F + S+ +Q +++ S +N AY L
Sbjct: 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61
Query: 63 KDPFLRSIY-LCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQI 121
KDP LR+ Y L +G+D + FL +Q + RE L + + D+ + +L +
Sbjct: 62 KDPLLRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGV 121
Query: 122 SEPDDI 127
D
Sbjct: 122 EIKADQ 127
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 79.2 bits (195), Expect = 3e-17
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 14 FNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73
+ +D L K Y Q + HPD +Q A+ + ST LN+AY LKDP R+ Y+
Sbjct: 1 WQLDQSRLRKRYRQLQAQYHPD--ASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYML 58
Query: 74 KLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111
KL IDL + F + +K R+ L I+ D
Sbjct: 59 KLLNIDLTQEQTSERDTAFPMELLKVRDELDEIEQMDD 96
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 81.2 bits (201), Expect = 2e-16
Identities = 86/427 (20%), Positives = 150/427 (35%), Gaps = 93/427 (21%)
Query: 134 VSIGIDFGTTNSLVA--IVRNNIPEVL-------KDKYGYFLIPSIVRYLPDGKIY-VGK 183
+ +GIDFGTT S VA + ++ P++ + GY +P+ + Y P+GK+ G
Sbjct: 1 LVVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGY 60
Query: 184 KAK--ITQNIDPKNTISSIKRF----IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKS 237
+A+ + + F LK +K + K+
Sbjct: 61 EAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQG-------------DDKLKPLPPGKT 107
Query: 238 PIEISA----QIFITLKKIAENAVNNRIFGA-----VITVPAYFNDIQRQFTKNAAKLAG 288
+++ A ++ + + N F A V+TVPA ++D +Q + AA AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 289 LNV-------LRLLNEPTSAAIA----YKLDKNIFEG-IFAVYDLGGGTFDIS---ILKF 333
L L ++ EP +AA+ + N+ G F V D GGGT D++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 334 KNGVFKVLSVGGDSNLGG------------------DDFDYCLFS--W-IVKNAFL-KKL 371
+ K L+ G G W I+ F K
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKR 287
Query: 372 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITI---DMKQFFTITQHLVNRT 428
S+ + +L ++ + + I DMK F ++
Sbjct: 288 SFGG------TDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLF---DPVIEEI 338
Query: 429 I-LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVV 484
I L+ + ++ + + LVGG ++ + F +L DP AVV
Sbjct: 339 IDLI--EEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVV 396
Query: 485 FGAAIQA 491
GA +
Sbjct: 397 RGAVLFG 403
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 76.4 bits (188), Expect = 4e-16
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 4 YFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILK 63
+F F+L F +D+D L Y +++HPD F + +Q +++ S LN+AY LK
Sbjct: 6 HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65
Query: 64 DPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111
P R+ YL L+G ++ ++ ++ +FL QQM+ RE L ++++ D
Sbjct: 66 SPPRRARYLLALSGHEVPLEVTVH-DPEFLLQQMQLREELEELQDEAD 112
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 77.6 bits (192), Expect = 3e-15
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 136 IGIDFGTTNSLVAIVRNNIPE--VLKDKYGYFLIPSIVRY-----LPDGKIYVGKKAKIT 188
+GIDFGT+NS VA+ R+ P L+ PS + + + ++ G+ A I
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTL--PSALFFPHEESALEREVLFGRAA-IA 57
Query: 189 QNID-PKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQI 245
++ P + S+K F+ L I G + E
Sbjct: 58 AYLEGPGEGRLMRSLKSFLGSSL------------------FRETRIFGRRLTFEDLVAR 99
Query: 246 FIT-LKKIAENAVNNRIFGAVITVPAYFNDI--------QRQFTKNAAKLAGLNVLRLLN 296
F+ LK+ AE A+ I VI P +F + + AA+ AG +
Sbjct: 100 FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAAGFKDVEFQY 158
Query: 297 EPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-------VLSVGGDS 347
EP +AA+ Y +L + E + V D+GGGT D S+++ +L+ G
Sbjct: 159 EPIAAALDYEQRLTR---EELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGV- 214
Query: 348 NLGGDDFDY 356
+GG DFD
Sbjct: 215 RIGGTDFDR 223
Score = 36.4 bits (85), Expect = 0.039
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 387 KELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDI 446
K LS Q ++++ + + + +F + R +AL A ++ I
Sbjct: 311 KIALSSQDETRIDLDFVEVGL-EAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAI 369
Query: 447 NNVILVGGSTRMKHI 461
+ V L GGS+ + +
Sbjct: 370 DRVFLTGGSSLVPAV 384
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 71.4 bits (175), Expect = 1e-14
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M+NYF LP+ +NID+ +L+K Y+ Q K HPD K+ +++ ++ +++ LN AYS
Sbjct: 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDK--AKTLQEKEQNLIIASELNNAYS 58
Query: 61 ILKDPFLRSIYLCKLNGIDLNT-KLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 119
LKD R+ Y+ L I+LN K S L E + D K
Sbjct: 59 TLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIKNKY 118
Query: 120 QISEPDDIS 128
++ ++I
Sbjct: 119 ELMYKNEID 127
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 57.8 bits (140), Expect = 5e-09
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV--RYLPDGKIY----VGKKAKITQ 189
IGID GT N+LV + I VL + PS+V R D K VG +AK
Sbjct: 5 IGIDLGTANTLVYVKGRGI--VLNE-------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 249
P N I +I R +K + DF+ M+ + FI
Sbjct: 56 GKTPGN-IVAI-----RPMK----DGVIADFEVTEKMI----------------KYFI-- 87
Query: 250 KKIAENAVNNRIFG--AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K++ F VI VP+ ++R+ K +A AG + L+ EP +AAI L
Sbjct: 88 KQVHS---RKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Query: 308 DKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
+ E + V D+GGGT +++++ G+ S+ +GGD+FD + ++I +
Sbjct: 145 P--VEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSI----RVGGDEFDEAIINYIRRT 196
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 47.9 bits (115), Expect = 2e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+Y++ +P+ + + + K Y K HPD K+ D A K +N+AY +L
Sbjct: 1 DYYEILGVPR--DASDEEIKKAYRKLALKYHPD----KNPGDPAAEEK-FKEINEAYEVL 53
Query: 63 KDPFLRSIYL 72
DP R+IY
Sbjct: 54 SDPEKRAIYD 63
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 51.3 bits (124), Expect = 7e-07
Identities = 97/391 (24%), Positives = 155/391 (39%), Gaps = 114/391 (29%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRY-LPDGKIY-VGKKAKITQNIDP 193
IGID GT N+LV + I VL PS+V GKI VG++AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VLN-------EPSVVAIDTKTGKILAVGEEAK------- 44
Query: 194 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFIT--LKK 251
+ R NI P +K G+ + E + + +KK
Sbjct: 45 --------EMLGRTPGNIEV-IRP-----------LK--DGVIADFEA-TEAMLRYFIKK 81
Query: 252 IAENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
+F VI VP+ +++R+ +AA AG + L+ EP +AAI LD
Sbjct: 82 ----VKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD 137
Query: 309 KNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSNL---GGDDFDYCLFSW 361
IFE G V D+GGGT +I+ V+S+GG S GGDDFD
Sbjct: 138 --IFEPKGNMVV-DIGGGTTEIA----------VISLGGIVVSKSIRVGGDDFDEA---- 180
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNV----KLSDKKIVNIT-IDMK- 415
I++ ++++ Y L+I R +E+ K+ + L +++ + + D+
Sbjct: 181 IIR--YVRR-KYN----LLIGERTAEEI-------KIEIGSAYPLDEEETMEVKGRDLVT 226
Query: 416 ---QFFTITQHLVNRTILLSSKALMDANLTIK------------DI--NNVILVGGSTRM 458
+ +T V + +++A IK DI ++L GG +
Sbjct: 227 GLPRTVEVTSEEVREALKEPLDEIVEA---IKSVLEKTPPELAADILDRGIVLTGGGALL 283
Query: 459 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489
+ + E +S + + DP V GA
Sbjct: 284 RGLDELISEETGLPVRVAEDPLTCVAKGAGK 314
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 49.9 bits (120), Expect = 2e-06
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFL-IPSIVRYLPDGKI----YVGKKAKITQN 190
IGID GT N+LV G L PS+V +GK VG++AK
Sbjct: 9 IGIDLGTANTLVY----------VKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAK---Q 55
Query: 191 IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
+ + T +I R +K+ F E+ + FI K
Sbjct: 56 MLGR-TPGNIV--AIRPMKDGVIADFEV--------------------TELMLKYFI--K 90
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K+ +N + VI VP+ D++R+ K AA+ AG + L+ EP +AAI L
Sbjct: 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP-- 148
Query: 311 IFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIVK 364
I E + V D+GGGT +++ V+S+GG S+ +GGD D + ++ K
Sbjct: 149 IMEPTGSMVVDIGGGTTEVA----------VISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198
Query: 365 N 365
Sbjct: 199 K 199
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 44.9 bits (107), Expect = 2e-06
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+Y++ +P+ + +D + K Y K HPD + ++ + +N+AY +
Sbjct: 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKE----INEAYEV 54
Query: 62 LKDP 65
L DP
Sbjct: 55 LSDP 58
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 48.2 bits (115), Expect = 4e-06
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK E + + A +P + + N + AG+ VL +L+EPT+AA ++
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK 108
Query: 309 KNIFEGIFAVYDLGGGTFDISILK 332
AV D+GGGT ISILK
Sbjct: 109 NG------AVVDVGGGTTGISILK 126
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 47.9 bits (115), Expect = 5e-06
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK E + + A +P ++ + N + AGL V +L+EPT+AA +D
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID 135
Query: 309 KNIFEGIFAVYDLGGGTFDISILK 332
AV D+GGGT ISILK
Sbjct: 136 NG------AVVDIGGGTTGISILK 153
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 48.3 bits (116), Expect = 6e-06
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 92/380 (24%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 193
IGID GT N+LV + K K PS+V K + VG +AK P
Sbjct: 4 IGIDLGTANTLVYV---------KGKGIVLNEPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 194 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 253
N I ++ R LK+ G+ + E++ + LK
Sbjct: 55 GN-IVAV-----RPLKD-----------------------GVIADFEVTEAM---LKYFI 82
Query: 254 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
+ R VI VP+ +++R+ K AAK AG + L+ EP +AAI L
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 311 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIV 363
+ E G V D+GGGT +++ V+S+GG S + GD+ D + +I
Sbjct: 141 VEEPTGNMVV-DIGGGTTEVA----------VISLGGIVTSKSVRVAGDEMDEAIIKYIR 189
Query: 364 KNAFLKKLSYKDVNILMIKSR---EIK-ELLS-YQSSVKLNVKLSDKKIV-----NITID 413
K Y L+I R IK E+ S Y + + +++ + +V I I
Sbjct: 190 KK-------YN----LLIGERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 414 MKQFFTITQHLVNRTILLSSKALMD--ANLTIKDI--NNVILVGGSTRMKHIHEGVSNFF 469
++ + V+ + + L L DI ++L GG ++ + + +S+
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPEL-AADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 470 KTTLLTSIDPDKAVVFGAAI 489
+ + DP V G
Sbjct: 298 GLPVHIAEDPLTCVALGTGK 317
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 43.3 bits (103), Expect = 7e-06
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+Y+D +P + + + K Y K HPD D + + +N+AY +L
Sbjct: 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKN-----PDDPEAEEKFKEINEAYEVL 53
Query: 63 KD 64
D
Sbjct: 54 SD 55
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 46.0 bits (110), Expect = 3e-05
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 249 LKKIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
LK A R F +I +P ++++ + AA+ AG + L+ EP +AAI
Sbjct: 80 LKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 306 KLDKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG---DSNL--GGDDFDYCL 358
LD I + G V D+GGGT DI+ VLS+GG S++ GD FD
Sbjct: 140 GLD--ISQPSGNMVV-DIGGGTTDIA----------VLSLGGIVTSSSIKVAGDKFD--- 183
Query: 359 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 418
I++ +++K YK L+I R +E+ K+ + + ++++
Sbjct: 184 -EAIIR--YIRK-KYK----LLIGERTAEEI-------KIKIGTAFPGAREEEMEIRGRD 228
Query: 419 TITQHLVNRTILLSSKALMDA 439
+T + +TI ++S+ + +A
Sbjct: 229 LVTG--LPKTITVTSEEIREA 247
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 43.7 bits (103), Expect = 2e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK E + R A +P + + N + AGL VL +L+EPT+AA +LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 309 KNIFEGIFAVYDLGGGTFDISILK 332
V D+GGGT ISI+K
Sbjct: 141 DG------GVVDIGGGTTGISIVK 158
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 43.0 bits (101), Expect = 3e-04
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 249 LKKIAENAVNN-----RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
LK+I + A N R V+ P+ ++R+ +A K G + L+ EP +AAI
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 304 AYKL--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
L D+ + V D+GGGT +++I+ F GV S+ +GGD D + S+
Sbjct: 141 GADLPVDEPVAN---VVVDIGGGTTEVAIISF-GGVVSCHSI----RIGGDQLDEDIVSF 192
Query: 362 IVK 364
+ K
Sbjct: 193 VRK 195
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 40.2 bits (93), Expect = 0.002
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
+ +Y++ +P N ++ + K Y K HPD ++ D + + +N+AY
Sbjct: 5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPD----RNPGDPKVAEEKFKEINEAYE 58
Query: 61 ILKDPFLRSIYL 72
IL DP R+ Y
Sbjct: 59 ILSDPERRAEYD 70
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 40.1 bits (95), Expect = 0.002
Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 74/236 (31%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV-RYLPDGKIY-VGKKAKITQNID- 192
IGID GT N+LV + I VL + PS+V GK+ VG++AK + +
Sbjct: 11 IGIDLGTANTLVYVKGKGI--VLNE-------PSVVAIDTKTGKVLAVGEEAK--EMLGR 59
Query: 193 -PKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFIT--L 249
P N I +I R LK+ G+ + E + + +
Sbjct: 60 TPGN-IEAI-----RPLKD-----------------------GVIADFEA-TEAMLRYFI 89
Query: 250 KKIAENAVNNRIFG----AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
KK R F VI VP+ +++R+ + AA+ AG + L+ EP +AAI
Sbjct: 90 KK-----ARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGA 144
Query: 306 KLDKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFD 355
L + E + V D+GGGT +++ V+S+GG S + GD+ D
Sbjct: 145 GLP--VTEPVGNMVVDIGGGTTEVA----------VISLGGIVYSESIRVAGDEMD 188
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 38.7 bits (90), Expect = 0.003
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 228 HIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQR---------- 277
G + ++ + L K A + + I IT P R
Sbjct: 29 TPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLL 88
Query: 278 QFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGV 337
A + G + ++N+ +AA+A L + + V DLG GT I+I ++G
Sbjct: 89 IPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTV-LVVDLGTGTTGIAI--VEDGK 145
Query: 338 FKVLSVG 344
V + G
Sbjct: 146 GGVGAAG 152
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 39.1 bits (92), Expect = 0.005
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++Y++ + K + + + K Y KK HPD ++ D++A K +N+AY +
Sbjct: 4 RDYYEILGVSK--DASEEEIKKAYRKLAKKYHPD----RNPGDKEAEEKFKE-INEAYEV 56
Query: 62 LKDPFLRSIY 71
L DP R+ Y
Sbjct: 57 LSDPEKRAAY 66
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 37.9 bits (89), Expect = 0.015
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 33/117 (28%)
Query: 226 MLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDI-----QRQ-- 278
MLHIK AE + I AVI P F + RQ
Sbjct: 134 MLHIKQQ--------------------AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAE 173
Query: 279 -FTKNAAKLAGLNVLRLLNEPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILK 332
+ AAK AG + EP +A + + L + E V D+GGGT D S+L
Sbjct: 174 GILERAAKRAGFKDVEFQFEPVAAGLDFEATLTE---EKRVLVVDIGGGTTDCSMLL 227
Score = 32.5 bits (75), Expect = 0.72
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD 176
IG D+GT N VA++R+ P +L + +PS + P
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPT 42
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 37.6 bits (87), Expect = 0.015
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y+ +PK N D + K + +K HPD + K A K +N+AY++
Sbjct: 4 KDYYAILGVPK--NASQDEIKKAFKKLARKYHPD--VNK---SPGAEEKFKE-INEAYTV 55
Query: 62 LKDPFLRSIY 71
L DP R IY
Sbjct: 56 LSDPEKRRIY 65
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 36.1 bits (84), Expect = 0.059
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 265 VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE-GIFAVYDLGG 323
VIT P +I K + AGL V ++ EP ++A+A L ++ E G+ A+ D+GG
Sbjct: 159 VITGPK---NILENLEK-CVERAGLKVDNIVLEPLASALA-VLTEDEKELGV-ALIDIGG 212
Query: 324 GTFDISILKFKNGVF---KVLSVGGD 346
GT DI+I +KNG V+ VGGD
Sbjct: 213 GTTDIAI--YKNGALRYTGVIPVGGD 236
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 35.8 bits (84), Expect = 0.061
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 73/245 (29%)
Query: 136 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPD-GKIY-VGKKAKITQNID 192
+GID GT N+LV V+ I VL + PS+V D K+ VG++AK
Sbjct: 8 LGIDLGTANTLV-YVKGKGI--VLNE-------PSVVAIRTDTKKVLAVGEEAKQMLGRT 57
Query: 193 PKNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
P N I +I R +K+ I DF ML + FI K
Sbjct: 58 PGN-IVAI-----RPMKDGVIA------DFDVTEKML----------------KYFI--K 87
Query: 251 KIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K V+ + VI VP+ +++R+ + +A AG + L+ EP +AAI L
Sbjct: 88 K-----VHKNFRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGL 142
Query: 308 DKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFDYCLFS 360
+ E G V D+GGGT +++ V+S+GG S +GGD FD + +
Sbjct: 143 P--VTEPTGSMVV-DIGGGTTEVA----------VISLGGIVYSKSVRVGGDKFDEAIIN 189
Query: 361 WIVKN 365
++ +N
Sbjct: 190 YVRRN 194
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 34.8 bits (80), Expect = 0.12
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y++ + + N + + K Y KK HPD + D++A K +N+AY I
Sbjct: 5 KDYYEILGVDR--NATEEEIKKAYRRLAKKYHPD----LNPGDKEAEQKFKE-INEAYEI 57
Query: 62 LKDPFLRSIY 71
L DP R+ Y
Sbjct: 58 LSDPQKRAQY 67
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 33.2 bits (76), Expect = 0.46
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y++ + + N + + K Y +K HPD K + +A K +N+AY +
Sbjct: 3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPD--FNK---NPEAEEKFKE-INEAYQV 54
Query: 62 LKDPFLRSIY 71
L DP R +Y
Sbjct: 55 LSDPEKRKLY 64
>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain. This
domain is the HSCB C-terminal oligomerisation domain and
is found on co-chaperone proteins.
Length = 78
Score = 30.3 bits (69), Expect = 0.47
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 91 DFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
+FL +QM+ RE L + D+ L +
Sbjct: 5 EFLMEQMELREALEEARASDDEEALDELKK 34
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 32.6 bits (74), Expect = 0.74
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 265 VITVPAYFNDIQRQFTKNAAKLAGL----NVLRLLN--EPTSAAI 303
V+TVPA + +QF + AA LAGL N +LL EP +A+I
Sbjct: 144 VLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPEAASI 188
>gnl|CDD|224180 COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid
metabolism].
Length = 362
Score = 31.5 bits (72), Expect = 1.5
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 198 SSIKRFIARDLKNINTNSFPYDF-----QNKFGMLHIKTISGIKSPIEI----------- 241
S++ + L + + P D+ K + I+ P+ +
Sbjct: 248 SAVTSILGYKLGDKPIHIGPSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPN 307
Query: 242 SAQIFITLKKIAENAVNNRIFGAVITVPAYF 272
SA + I L ++A+ A++ I G V V AYF
Sbjct: 308 SAGLIIDLVRLAKLALDRGIGGPVYEVSAYF 338
>gnl|CDD|115392 pfam06730, FAM92, FAM92 protein. This family of proteins has a
role in embryogenesis. During embryogenesis it is
essential for ectoderm and axial mesoderm development.
It may regulate cell proliferation and apoptosis.
Length = 219
Score = 30.7 bits (69), Expect = 1.8
Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 365 NAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL---NVKLS----DKKIVNIT--IDMK 415
+ F K Y+ + ++++ ++ L Y + VK+ ++K + +++ + +
Sbjct: 75 DEFAKLQDYRQAEVERLEAKVVEPLKQYGTIVKMKRDDLKATLTARNREAKQLRQLERTR 134
Query: 416 QFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
Q +H++++ +A MDA T + + I ++K I + +S F +L
Sbjct: 135 QRNPSDRHVISQAETELQRAKMDAQRTSRHLEETIGNFEQQKLKDIKQIISEFITIEML 193
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 30.8 bits (69), Expect = 2.1
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 21 LDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71
L K Y K+ HPD K DA K +N AY +LKD R+ Y
Sbjct: 20 LKKAYLKLAKQYHPDTTDAK-----DAEKKFKE-INAAYDVLKDEQKRAAY 64
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 30.7 bits (69), Expect = 2.3
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++Y+D + K N + + Y K HPD K+K ++++ K +AY I
Sbjct: 4 RSYYDILGVSKSANDEE--IKSAYRKLAIKYHPD----KNKGNKESEEKFKE-ATEAYEI 56
Query: 62 LKDPFLRSIY 71
L+DP R Y
Sbjct: 57 LRDPKKRQAY 66
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 30.5 bits (70), Expect = 3.1
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 540 EFTTFKDNQTAIAIKVVQGEDELV---KNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 596
KD + V+ +D L N ++L F L ++P + G+ + D D
Sbjct: 629 AVINLKDGDEVLPPVPVEDDDHLAAITSNGRLLV-FPLSELPELGKGKGVKLINLPKDDD 687
Query: 597 GLLSIFAY 604
GL+ +
Sbjct: 688 GLVDLRVL 695
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 30.3 bits (69), Expect = 3.1
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 451 LVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV----VFG 486
L+ G R H ++F TLL + PD + VFG
Sbjct: 331 LLAGGKRYPHPEYPQGHYFPPTLLVDVTPDMKIAQEEVFG 370
>gnl|CDD|111779 pfam02929, Bgal_small_N, Beta galactosidase small chain. This
domain comprises the small chain of dimeric
beta-galactosidases EC:3.2.1.23. This domain is also
found in single chain beta-galactosidase.
Length = 274
Score = 29.9 bits (68), Expect = 3.9
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 553 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSI 601
I VQ E E+ + + +EL + + VTY + DG +++
Sbjct: 72 IAAVQSEGEVAVSVRS--AYELPGVTDF-----TVTVTYTIFGDGQINV 113
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 29.8 bits (67), Expect = 5.2
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y++ + + N + + + Y K+ HPD + K +A K + +AY +
Sbjct: 4 KDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRK---EAEQKFKE-IQEAYEV 57
Query: 62 LKDPFLRSIY 71
L DP R++Y
Sbjct: 58 LSDPQKRAMY 67
>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase;
Provisional.
Length = 266
Score = 28.8 bits (65), Expect = 7.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 287 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAV 318
AG+N+ RLL + A Y+L++ F+ +F +
Sbjct: 85 AGINIPRLLVDEKDPAGKYELNEAAFDKMFNI 116
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 29.1 bits (66), Expect = 7.7
Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 50/185 (27%)
Query: 347 SNLGGDDFDYCLFSWIVKNAFLKK-LSYKDVNILMIKS----REIKELLSYQSSVKLNVK 401
++ G D +LK+ LS + REIKE L Y +
Sbjct: 173 IDIAGRDI----------TDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEM 222
Query: 402 LSDKKIVNITIDMKQF----FTITQHLVNR----TILLS-----------SKALMDANLT 442
++ + K + + R IL S + + ++ +
Sbjct: 223 KLARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYES-IQ 281
Query: 443 IKDI-------NNVILVGGSTRMKHIHEG--------VSNFFKTTLLTSIDPDKAVVFGA 487
DI N++L GGST + E K ++ + +V G
Sbjct: 282 KCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGG 341
Query: 488 AIQAN 492
+I A+
Sbjct: 342 SILAS 346
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 28.8 bits (64), Expect = 9.6
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 31 KIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71
K HPD D KL + KA +L D LR Y
Sbjct: 73 KYHPDKTAAGGNKGCDEFFKL---IQKAREVLGDRKLRLQY 110
>gnl|CDD|220744 pfam10421, OAS1_C, 2'-5'-oligoadenylate synthetase 1, domain 2,
C-terminus. This is the largely alpha-helical,
C-terminal half of 2'-5'-oligoadenylate synthetase 1,
being described as domain 2 of the enzyme and homologous
to a tandem ubiquitin repeat. It carries the region of
enzymic activity between 320 and 344 at the extreme
C-terminal end. Oligoadenylate synthetases are antiviral
enzymes that counteract vial attack by degrading viral
RNA. The enzyme uses ATP in 2'-specific nucleotidyl
transfer reactions to synthesise 2'.5'-oligoadenylates,
which activate latent ribonuclease, resulting in
degradation of viral RNA and inhibition of virus
replication. This domain is often associated with
NTP_transf_2 pfam01909.
Length = 191
Score = 28.4 bits (64), Expect = 9.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 598 LLSIFAYEKISGKKKFITIKPF 619
LL+++A+E+ SGK+ F T + F
Sbjct: 76 LLTVYAWEQGSGKEDFDTAEGF 97
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 29.0 bits (66), Expect = 9.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 31 KIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71
K HPD ++ D++A K + +AY +L DP R+ Y
Sbjct: 31 KYHPD----RNPGDKEAEEKFKE-IKEAYEVLSDPQKRAAY 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,679,114
Number of extensions: 3336808
Number of successful extensions: 3305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3135
Number of HSP's successfully gapped: 126
Length of query: 634
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 531
Effective length of database: 6,369,140
Effective search space: 3382013340
Effective search space used: 3382013340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)