RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8852
(634 letters)
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 450 bits (1159), Expect = e-151
Identities = 215/525 (40%), Positives = 311/525 (59%), Gaps = 38/525 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINT----NSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ +IKR I R ++ + P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 311 IFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 367 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 408
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 409 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468
NI + + ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 469 FKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF 528
F ++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
+NTTIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
VT+ +DADG+L + A +K SGK++ ITIK +N DEI+ ++D
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRD 518
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 435 bits (1121), Expect = e-147
Identities = 206/515 (40%), Positives = 296/515 (57%), Gaps = 49/515 (9%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 196 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
TI SIKR + D K I + +P EISA I LK AE
Sbjct: 63 TIISIKRHMGTDYKVEIEGKQY--------------------TPQEISAIILQYLKSYAE 102
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314
+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK +
Sbjct: 103 DYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQT 162
Query: 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK---- 370
I VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V F ++
Sbjct: 163 I-LVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ-FKQEHGID 220
Query: 371 LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFF 418
LS KD + + + ++ KEL + + L + + +T+ +F
Sbjct: 221 LS-KD-KMALQRLKDAAEKAKKELSGVTQT---QISLPFISANENGPLHLEMTLTRAKFE 275
Query: 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 478
++ HLV RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335
Query: 479 PDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYS 538
PD+ V GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S
Sbjct: 336 PDEVVAIGAAIQGGVIAGEVK---DVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKS 392
Query: 539 GEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 598
FTT DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G+
Sbjct: 393 QVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGI 452
Query: 599 LSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ + A + + K++ ITIK ++ +EI+ +K+
Sbjct: 453 VHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKE 487
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 430 bits (1109), Expect = e-145
Identities = 198/510 (38%), Positives = 293/510 (57%), Gaps = 32/510 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K ++GID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 61
Query: 192 DPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK---SP 238
+P NT+ KR I R D+K+ +P+ N G ++ G P
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKH-----WPFMVVNDAGRPKVQVEYKGETKSFYP 116
Query: 239 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEP 298
E+S+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 299 TSAAIAYKLDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 357
T+AAIAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD
Sbjct: 177 TAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 358 LFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKKIVN 409
+ + + F +K KD+ + + R K LS + + + L +
Sbjct: 237 MVNHFIAE-FKRKHK-KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFY 294
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFF 354
Query: 470 K-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKII 527
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 355 NGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLI 414
Query: 528 FRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARI 587
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I
Sbjct: 415 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474
Query: 588 KVTYQVDADGLLSIFAYEKISGKKKFITIK 617
+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 475 EVTFDIDANGILNVSAVDKSTGKENKITIT 504
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 406 bits (1045), Expect = e-133
Identities = 113/525 (21%), Positives = 225/525 (42%), Gaps = 54/525 (10%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 5 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 63
Query: 196 TISSIKRFIAR---------DLKNINTNSFPY---DFQNKFGMLHIKTISGIK--SPIEI 241
T++++KR I + K+ F + +K ++ S ++
Sbjct: 64 TVANLKRIIGLDYHHPDFEQESKH-----FTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 242 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 301
+A +K + I I VP ++ + QR +AA++AGLN +R++N+ T+A
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAA 178
Query: 302 AIAYKLDKNIF------EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355
++Y + K I A D+G ++ SI+ FK G KVL D + GG DFD
Sbjct: 179 GVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFD 238
Query: 356 YCLFSWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLSYQSSVKLNVK-LSDKKI 407
+ F K D+ ++ + ++K++LS ++ +V+ + +
Sbjct: 239 LAITEHFADE-FKTKYK-IDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD 296
Query: 408 VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSN 467
V+ + ++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S
Sbjct: 297 VSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
Query: 468 FFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE--- 524
F L T+++ D+A+ GAA S + F D+ P S+ + +
Sbjct: 357 AFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP-FKFEDIHPYSVSYSWDKQVEDEDH 415
Query: 525 -KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 583
++ ++ P + D A + + +AN+E+ +
Sbjct: 416 MEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQ 473
Query: 584 R-ARIKVTYQVDADGLLSI----------FAYEKISGKKKFITIK 617
+K+ + D GL +I + + KK +TI
Sbjct: 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 317 bits (815), Expect = e-103
Identities = 153/387 (39%), Positives = 219/387 (56%), Gaps = 35/387 (9%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS----FPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 311 IFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 367 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 408
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 409 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468
NI + + ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 469 FKTTLLTSIDPDKAVVFGAAIQANFLS 495
F ++PD+AV GAA+Q L+
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLT 383
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 289 bits (742), Expect = 4e-92
Identities = 154/390 (39%), Positives = 228/390 (58%), Gaps = 30/390 (7%)
Query: 128 SVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKI 187
V+N IGID GTT S VA+++N E+L ++ G + PS V + D + +G AK
Sbjct: 13 DVENYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFT-DDERLIGDAAKN 71
Query: 188 TQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK- 236
+P+NTI IKR I D+K+ P++ NK G ++ ++ G K
Sbjct: 72 QVAANPQNTIFDIKRLIGLKYNDRSVQKDIKH-----LPFNVVNKDGKPAVEVSVKGEKK 126
Query: 237 --SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRL 294
+P EIS I +K+IAE+ + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR+
Sbjct: 127 VFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRI 186
Query: 295 LNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 354
+NEPT+AAIAY LDK+ E VYDLGGGTFD+S+L +NGVF+V + GD++LGG+DF
Sbjct: 187 VNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDF 246
Query: 355 DYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKK 406
DY + ++K F KK DV N + K + K LS Q S ++ + D
Sbjct: 247 DYKIVRQLIKA-FKKKHG-IDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGI 304
Query: 407 IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 466
++ T+ +F + L +T+ K L D+ L KD+++++LVGGSTR+ + + +
Sbjct: 305 DLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLE 364
Query: 467 NFFK-TTLLTSIDPDKAVVFGAAIQANFLS 495
++F I+PD+AV +GAA+QA LS
Sbjct: 365 SYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 284 bits (729), Expect = 4e-90
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 125 DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKK 184
+ +IGID GTT S V + ++ E++ + G PS V + D + +G
Sbjct: 15 TENLYFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDA 73
Query: 185 AKITQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISG 234
AK ++P NTI KR I R D+K+ +P+ ++ G ++ G
Sbjct: 74 AKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKH-----WPFRVVSEGGKPKVQVEYKG 128
Query: 235 IK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
P EIS+ + +K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNV
Sbjct: 129 ETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 188
Query: 292 LRLLNEPTSAAIAYKLDKNIF---EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 348
LR++NEPT+AAIAY LDK E ++DLGGGTFD+SIL ++G+F+V S GD++
Sbjct: 189 LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248
Query: 349 LGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV- 400
LGG+DFD + S + + F +K KD+ + + R K LS + + +
Sbjct: 249 LGGEDFDNRMVSHLAEE-FKRK-HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306
Query: 401 KLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 460
L + +I +F + L T+ KAL DA L I ++LVGGSTR+
Sbjct: 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK 366
Query: 461 IHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN 497
I + + +FF L SI+PD+AV +GAA+QA L G+
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 208 bits (531), Expect = 2e-63
Identities = 77/127 (60%), Positives = 99/127 (77%)
Query: 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 566
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 567 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 626
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 627 IKSNLKD 633
I S +KD
Sbjct: 121 IASMIKD 127
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 144 bits (365), Expect = 3e-40
Identities = 55/129 (42%), Positives = 86/129 (66%)
Query: 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 564
+DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 21 QSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAG 80
Query: 565 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 624
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 81 DNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSK 140
Query: 625 DEIKSNLKD 633
D+I++ +K+
Sbjct: 141 DDIENMVKN 149
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 140 bits (355), Expect = 1e-39
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 486 GAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFK 545
G++ + + ++DV PLSLGIET+GG++ +I +NTTIP +S F+T +
Sbjct: 2 GSSHHHHHHGL---VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 58
Query: 546 DNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 605
DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+ +DADG+L + A +
Sbjct: 59 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118
Query: 606 KISGKKKFITIK 617
K SGK++ ITIK
Sbjct: 119 KNSGKEQKITIK 130
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 141 bits (357), Expect = 2e-39
Identities = 51/110 (46%), Positives = 71/110 (64%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITIT 113
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 140 bits (356), Expect = 2e-39
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 140 bits (355), Expect = 3e-39
Identities = 48/110 (43%), Positives = 75/110 (68%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT 113
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 139 bits (353), Expect = 4e-38
Identities = 62/129 (48%), Positives = 89/129 (68%)
Query: 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 564
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAA 61
Query: 565 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 624
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNE 121
Query: 625 DEIKSNLKD 633
DEI+ ++D
Sbjct: 122 DEIQKMVRD 130
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 136 bits (345), Expect = 7e-38
Identities = 54/126 (42%), Positives = 87/126 (69%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 627
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 628 KSNLKD 633
++ +K+
Sbjct: 124 ENMIKE 129
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 119 bits (300), Expect = 2e-31
Identities = 37/118 (31%), Positives = 67/118 (56%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP + +D L + + Q++ HPD F S+ +Q A+V+ S +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
+ P +R+ YL L+G DL ++ + FL +Q++ RE L I+ KD+ + + ++
Sbjct: 62 RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIK 119
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 116 bits (293), Expect = 1e-30
Identities = 42/110 (38%), Positives = 59/110 (53%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
NYF+ F LP F +D LL + QK+ HPDNF S+ D+ +V+ + +N AY
Sbjct: 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQT 63
Query: 62 LKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111
LKDP R+ YL L GI++N + FL +QM+ RE L + D
Sbjct: 64 LKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTACAD 113
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 114 bits (285), Expect = 3e-29
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++YF + + F +D L Y Q+ +HPD F Q+S+ ++D S K ST +N AY
Sbjct: 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102
Query: 62 LKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
L P R +YL KL+GI++ + + FL + M+ E L+ +++ + ++++
Sbjct: 103 LLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVK 161
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 101 bits (254), Expect = 4e-24
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 50/258 (19%)
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+ + QI LK E + + +F A +P + + AGL ++
Sbjct: 65 GLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVT 124
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
L++EP +AA A ++ V D+GGGT I++++ D GG
Sbjct: 125 LVDEPVAAARALGINDG------IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTH 173
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
L K+ +++ + IK+ S + V+ +K+ I
Sbjct: 174 LSLVLAGSY-------KIPFEE-------AETIKKDFSRHREIMRVVRPVIEKMALIV-- 217
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ + + + T+ V +VGG+ + E S F +
Sbjct: 218 -------------------KEVIKNYDQTLP----VYVVGGTAYLTGFSEEFSRFLGKEV 254
Query: 474 LTSIDPDKAVVFGAAIQA 491
I P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 102 bits (254), Expect = 5e-24
Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 45/360 (12%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+ ID G+TN + ++ S + + + G K ++ +
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 255
A NI + Y N + H SG+ E+ I TL
Sbjct: 55 YSFDPISPDAVVTTNIA---WQYSDVNVVAVHHALLTSGL-PVSEVD--IVCTLPLTEYY 108
Query: 256 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 315
NN+ I + +++ T N + ++++ E A + + + +
Sbjct: 109 DRNNQPNTENI--ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSL 166
Query: 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 375
+ DLGG T DIS + + + + GDS+LG + +
Sbjct: 167 LII-DLGGTTLDISQV--MGKLSGISKIYGDSSLGVSLVTSAVKDAL------------- 210
Query: 376 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 435
+ S + + + D + I+ + +I +N + +
Sbjct: 211 --------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQR 262
Query: 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVVFGAAIQAN 492
+++ +V+++GG + I + V + + +V G + N
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 91.2 bits (226), Expect = 2e-21
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 1 MKNYFDFFNL-----PKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYL 55
+++ F + ID L K Y Q + HPD Q S + S+ L
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGS--------EQSSTL 61
Query: 56 NKAYSILKDPFLRSIYLCKL-NGIDL----NTKLNLNFSHDFLEQQMKWRETLSIIKNKK 110
N+AY LKDP RS Y+ KL IDL + L + + + LS + ++
Sbjct: 62 NQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEA 121
Query: 111 DKVKFMALLQ 120
+
Sbjct: 122 GVKLLEKQNK 131
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 69.4 bits (169), Expect = 7e-13
Identities = 48/370 (12%), Positives = 99/370 (26%), Gaps = 75/370 (20%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+G+D G ++ V V + PS +G K + +
Sbjct: 24 VGLDVGYGDTKVIGVDGKR----------IIFPSRWAVTETESWGIGGKIPVLSTDGGQT 73
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 255
K +++ + E I L + +
Sbjct: 74 KFIYGKYASGNNIRVPQGDGRLASK-------------------EAFPLIAAALWESGIH 114
Query: 256 AVNNRIFGAVIT-VPAYFNDIQRQFTKNAAK------------LAGLNVLRLLNEPTSAA 302
+ + + + P D++ + K A + + N+ RL+ P
Sbjct: 115 NDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174
Query: 303 IAYKL----DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 358
A L G V D+G T D+ + + V+ + +G D
Sbjct: 175 AALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAIS-- 231
Query: 359 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 418
+ K+ + L Q ++ V K++ +
Sbjct: 232 ---ALSRKIAKETGFVVPFDLA------------QEALSHPVMFRQKQVGGPEVSGPILE 276
Query: 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI- 477
+ ++ L + + ++I VGG + + I + TL+
Sbjct: 277 DLANRIIENI----RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP 327
Query: 478 -DPDKAVVFG 486
D A G
Sbjct: 328 EDLQFANALG 337
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 62.0 bits (150), Expect = 2e-10
Identities = 60/389 (15%), Positives = 119/389 (30%), Gaps = 70/389 (17%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+ + +DFG I +IPS + + + +
Sbjct: 2 SNVYVMALDFGNGFVKGKINDEKF-----------VIPSRIGRKTNENNQLKGFVDNKLD 50
Query: 191 IDPKNTISSIKR---FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFI 247
+ + F K NT +++ + K + + I +
Sbjct: 51 VSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDL--------VECSIGL 102
Query: 248 TLKKIAENAVNNRIFGAVITVP--AYFNDIQRQFTKNAAKLAGLNV-----------LRL 294
+++ E VN I +P D Q +F K K + + +++
Sbjct: 103 LAREVPEEVVNVVI---ATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 295 LNEPTSAAIAYKLD-----KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 349
+ +P + ++ K EG ++V D G GT I ++N V N
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINK 216
Query: 350 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVN 409
G DF +S K I R I++ L Y+ KL+ K +++
Sbjct: 217 GTIDFY---------KRIASHVS-KKSEGASITPRMIEKGLEYK-----QCKLNQKTVID 261
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
+ + L+ + I I+ +I+ GG + + +S+++
Sbjct: 262 FKDEFYK---EQDSLIEEVM----SNFEITVGNINSIDRIIVTGGGANI--HFDSLSHYY 312
Query: 470 KTTLLTSIDPDKAVVFGAAIQANFLSGNR 498
+ D + V G L
Sbjct: 313 SDVFEKADDSQFSNVRGYEKLGELLKNKV 341
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 59.7 bits (144), Expect = 7e-10
Identities = 37/324 (11%), Positives = 98/324 (30%), Gaps = 44/324 (13%)
Query: 180 YVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPI 239
+GK K T + + + +I NS + K ++ + +
Sbjct: 21 LIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETS 80
Query: 240 EISAQIFI-TLKKIAE--NAVNNRIFGAVITVPA--YFNDIQRQFTKNAAKLAG------ 288
+ + + I + ++ N V+ P N ++ ++ K G
Sbjct: 81 KTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKV 140
Query: 289 ------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLS 342
+ + + + + + +N AV D GG S+ ++N V S
Sbjct: 141 DDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVV-NPS 197
Query: 343 VGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKL 402
G D + + ++ + L
Sbjct: 198 ERFIEEHGVKDLIIRVGDALTDLNNGNLITNEQAESA----------------------L 235
Query: 403 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 462
++ + + T+ + + + + + K + + ++++I +GG+T+ +
Sbjct: 236 NNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 463 EGVSNFFKTTLLTSIDPDKAVVFG 486
E +S + + + + G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 8e-08
Identities = 72/441 (16%), Positives = 126/441 (28%), Gaps = 135/441 (30%)
Query: 206 RDLKNINTNSFPYDFQNK---------FGMLHIKTISGIKSPIEISAQIFITLKKIAENA 256
+D+ ++ ++F +F K I I K + + ++F TL E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 257 VNNRIFGAVITVPAY----------------------------FNDIQRQFTKNAAKLAG 288
V + V+ Y +ND Q F K
Sbjct: 79 V-QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK------- 128
Query: 289 LNVLR--LLNEPTSAAIAYKLDKNIFEGIFAVYDLGG-GTFDISILKFKNGVFKVLSVGG 345
NV R + A +L + + + + G G + + L V
Sbjct: 129 YNVSRLQPYLKLRQA--LLELRPA--KNVL-IDGVLGSGK---TWV--------ALDVCL 172
Query: 346 DSNLGGDDFDYCLFSWI-VKN-----AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLN 399
+ D+ +F W+ +KN L+ L +L + S++KL
Sbjct: 173 SYKV-QCKMDFKIF-WLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 400 VKLSDKKIVNITIDMKQFFTITQH----LV-----NRTIL----LSSKALMDANLTIKDI 446
I +I ++++ + LV N LS K L LT +
Sbjct: 227 -------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFK 275
Query: 447 NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFL- 505
V + HI + TL PD+ ++ +L L
Sbjct: 276 -QVTDFLSAATTTHI---SLDHHSMTL----TPDEVK----SLLLKYL----DCRPQDLP 319
Query: 506 --LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKV---VQGED 560
+L P L I I + + + ++ I+ V
Sbjct: 320 REVLTTNPRRLSI--IAESIRDGLATWDN--------WKHVNCDKLTTIIESSLNVLEPA 369
Query: 561 ELVKNCQVLANF-ELRDIPPM 580
E K L+ F IP +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTI 390
Score = 47.2 bits (111), Expect = 2e-05
Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 60/243 (24%)
Query: 2 KNYFDFFNLPKCFNIDMDLL-----DKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLN 56
K + P +I LL D I + + + + S +++ K ST
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQP--KESTI-- 426
Query: 57 KAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFS-HDFLEQQMKWRETL---SIIKNKKDK 112
+ SIYL +L KL ++ H + +T +I D+
Sbjct: 427 ---------SIPSIYL------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 113 --VKFMA--LLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIP 168
+ L I P+ +++ + +DF L +R+ D +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRM---VFLDF---RFLEQKIRH-------DSTAWNASG 518
Query: 169 SIVRYLPDGKIYVGKKAKITQNIDPKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGM 226
SI+ L K Y K I N DPK +++I F L I N + + +
Sbjct: 519 SILNTLQQLKFY---KPYICDN-DPKYERLVNAILDF----LPKIEENLICSKYTD---L 567
Query: 227 LHI 229
L I
Sbjct: 568 LRI 570
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 1e-05
Identities = 60/362 (16%), Positives = 118/362 (32%), Gaps = 133/362 (36%)
Query: 299 TSAAIAYKLDKNIFEGI--FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDY 356
TS A ++++ G F I + N V + GG+ G
Sbjct: 1638 TSKAA-----QDVWNRADNHFKDTYG---FSILDIVINNPVNLTIHFGGE---KGKR--- 1683
Query: 357 CLFSWIVKNAFLKKLSYKDVNILMIKSREI-KELLSYQSSVKLNVKLSDKKIVNITIDMK 415
I +N + ++ + +K+ +I KE+ + +S S+K +++ T
Sbjct: 1684 -----IREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR---SEKGLLSAT---- 1729
Query: 416 QFFTITQHLVNRTILLSSKALMDANLTIKD---INNVILVGGSTRMKHIH---E------ 463
QF TQ + L KA + +K I G H E
Sbjct: 1730 QF---TQ----PALTLMEKAAFED---LKSKGLIPADATFAG-------HSLGEYAALAS 1772
Query: 464 --GV-SNFFKTTLLTSIDPDKAVVF--GAAIQANFLSGNRGIDDNFLLLDVIP----LSL 514
V S ++ + VVF G +Q G N+ ++ + P S
Sbjct: 1773 LADVMS--IESLV--------EVVFYRGMTMQVAVPRDELG-RSNYGMIAINPGRVAASF 1821
Query: 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFEL 574
E + +VE++ +G ++ N+
Sbjct: 1822 SQEALQYVVERV--------GKRTGWL------------------------VEI-VNY-- 1846
Query: 575 RDIPPM---PAG--RARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKS 629
++ AG RA +D + ++ + K+ +K I+ +++L+E++
Sbjct: 1847 -NVENQQYVAAGDLRA-------LDT--VTNVLNFIKL---QKIDIIELQKSLSLEEVEG 1893
Query: 630 NL 631
+L
Sbjct: 1894 HL 1895
Score = 44.7 bits (105), Expect = 9e-05
Identities = 62/332 (18%), Positives = 103/332 (31%), Gaps = 133/332 (40%)
Query: 137 GIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK-IYVG--KKAKITQN--- 190
G+D T+ V N KD YG F I IV P I+ G K +I +N
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 191 ----IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIF 246
+ + K F K IN +S Y F+++ G+L T Q
Sbjct: 1691 MIFETIVDGKLKTEKIF-----KEINEHSTSYTFRSEKGLLS-AT---------QFTQP- 1734
Query: 247 ITLKKIAENAVNNRIFGAVITVP-AYFNDIQRQFTKNA-AKLAGLNVLRLLNEPTS---- 300
A+ + A F D++ + A A AG S
Sbjct: 1735 -----------------ALTLMEKAAFEDLKSKGLIPADATFAGH----------SLGEY 1767
Query: 301 ---AAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSV----GGDSN----- 348
A++A + ++ L + ++ F G+ ++V G SN
Sbjct: 1768 AALASLA---------DVMSIESL------VEVV-FYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 349 ---------LGGDDFDYCL------FSWIV-----------------KNAFLKKLSYKDV 376
+ Y + W+V A L ++
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-LDTVT---- 1866
Query: 377 NIL-MIKSREIKELLSYQSSVKLNVKLSDKKI 407
N+L IK ++I ++L LS +++
Sbjct: 1867 NVLNFIKLQKID-------IIELQKSLSLEEV 1891
Score = 43.1 bits (101), Expect = 3e-04
Identities = 86/536 (16%), Positives = 151/536 (28%), Gaps = 212/536 (39%)
Query: 156 EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRF---IARDLKNIN 212
L+++ F + LP+ + +P + +F ++ ++
Sbjct: 31 SQLQEQ---FN-----KILPE------PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 213 TNSFPY-------DFQNKFGML-----H--------------IKTISGIKSPIEISAQIF 246
F +F+N + L H +KT IK+ I
Sbjct: 77 VGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 247 ITLKKIAENAV-------NNRIF------GAVITVPAYFNDIQ----------RQFTKNA 283
K + +A+ N ++ G YF +++ K +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFS 191
Query: 284 AKL----------------AGLNVLRLLNEP---------TSAAIAYKLDKNIFEGIFAV 318
A+ GLN+L L P S I+ L I A
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL---IGVIQLAH 248
Query: 319 Y-----DLG---GGTFDI--SILKFKNGVFKVLSV---GGDSNLGGDDFDYCLFSWIVKN 365
Y LG G G+ V +V DS + F + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAETDS---WESF-FVSVRKAITV 302
Query: 366 AFL----KKLSYKDVNI---LMIKSREIKE-LLSYQSSV-------------KLNVKLSD 404
F +Y + ++ ++ S E E + S S+ K N L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 405 KKIVNITIDMKQFFTITQHLVN--RTILLSS--KALMDANLTI--------KDINNVILV 452
K V I+ LVN + +++S ++L NLT+ D + +
Sbjct: 363 GKQVEIS------------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF- 409
Query: 453 GGSTRMKHIHEGVSNF------FKTTLLTS----IDPDKAVVFGAAIQANFL-------- 494
S R + F F + LL I+ D V + A +
Sbjct: 410 --SERKLKFS---NRFLPVASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTF 463
Query: 495 SGN--RGIDDNFL--LLDVI---P--------------LSLG---IETIGGLVEKI 526
G+ R + + ++D I P L G +G L +
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 36.6 bits (84), Expect = 0.031
Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 90/238 (37%)
Query: 23 KIYYNFQKKIH---PDNFIQKSKIDQDASVKLSTY--------LNK-------------- 57
+I N+ I D ++ KI ++ + ++Y L+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 58 AYSILKDPFLR---------SI--Y--LCKLNG-IDLNTKLNL-----NFSHDFLEQQMK 98
A+ LK L S+ Y L L + + + + + + +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 99 WRETLSIIKNKKDKVKFMALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRN-NIPEV 157
R +I +V + +++ +G T LV IV N N+
Sbjct: 1803 GRSNYGMIAINPGRV-------AASFSQEALQYVVERVG---KRTGWLVEIV-NYNVE-- 1849
Query: 158 LKDKYGYFLIPSIVRYLPDGKIYV--GKKAKITQNIDP-KNTISSIKRFIARDLKNIN 212
+ YV G +D N ++ IK L+ I+
Sbjct: 1850 -------------------NQQYVAAGDLR----ALDTVTNVLNFIK------LQKID 1878
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 43.6 bits (104), Expect = 1e-04
Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 72/235 (30%)
Query: 136 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNID 192
IGID GT N+LV +R I V+ + PS++ + VG +AK
Sbjct: 6 IGIDLGTANTLV-FLRGKGI--VVNE-------PSVIAIDSTTGEILKVGLEAKNMIGKT 55
Query: 193 PKNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
P I +I R +++ I D+ ML + FI
Sbjct: 56 PAT-IKAI-----RPMRDGVIA------DYTVALVML----------------RYFI--N 85
Query: 251 KIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K A VI VP D++R+ +A AG + + L+ EP +AAI L
Sbjct: 86 K----AKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNL 141
Query: 308 DKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFD 355
+ + E G V D+GGGT +++ V+S+G +S + GD+ D
Sbjct: 142 N--VEEPSGNMVV-DIGGGTTEVA----------VISLGSIVTWESIRIAGDEMD 183
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 41.0 bits (96), Expect = 0.001
Identities = 45/380 (11%), Positives = 115/380 (30%), Gaps = 95/380 (25%)
Query: 130 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIY--------- 180
+ + ++G++ G + +L + + P LK P L +G +
Sbjct: 10 RPRVEALGLEIGAS-ALKLVEVSGNPPALK-ALASRPTPP--GLLMEGMVAEPAALAQEI 65
Query: 181 ------VGKKAK-----------ITQNI-DPKNTISSIKRFIARDLKNINTNSFPYDFQN 222
+ + I + I PK + ++ + + + P+
Sbjct: 66 KELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERY----IPFPIDE 121
Query: 223 KFGMLHIKTI-------SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDI 275
+L + G + + ++A + AV +
Sbjct: 122 V--VLDFAPLTPLSEVQEGEQVQVMVAA--------ARQEAVAGVL-------------- 157
Query: 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-LDKNIFEGIFAVYDLGGGTFDISILKFK 334
A + AGL + L +P + + + +F V D+G + + + +
Sbjct: 158 ------EALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVL--LR 209
Query: 335 NGVFKVLSVGGDSNLGGDDFDYCL---FSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 391
+ V L G DF + F+ + A K +Y + + + +
Sbjct: 210 GDKPLAVRV---LTLSGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDA 266
Query: 392 YQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 451
+ + S +I + ++ + R++ L + L
Sbjct: 267 ERE------RYSPGRIYDA---IRPVLVELTQELRRSLEFFRIQLEE-----ASPEVGYL 312
Query: 452 VGGSTRMKHIHEGVSNFFKT 471
+GG ++++ + +++
Sbjct: 313 LGGGSKLRGLASLLTDTLGV 332
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 35.1 bits (81), Expect = 0.011
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+D +P + YY HPD ++ +A+ + + +++AY +
Sbjct: 17 TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPD----RNSGSAEAAERFTR-ISQAYVV 69
Query: 62 LKDPFLRSIY 71
L LR Y
Sbjct: 70 LGSATLRRKY 79
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 36.4 bits (84), Expect = 0.015
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
++N++ + K + + + K+HPD K+ + +A +N+AY
Sbjct: 1 IQNFYSLLGVSK--TASSREIRQAFKKLALKLHPD----KNPNNPNAHGDFLK-INRAYE 53
Query: 61 ILKDPFLRSIY 71
+LKD LR Y
Sbjct: 54 VLKDEDLRKKY 64
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.8 bits (78), Expect = 0.017
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+Y+ +P+ N + K YY KK HPD +K D A K S L +AY +
Sbjct: 7 GDYYQILGVPR--NASQKEIKKAYYQLAKKYHPD----TNKDDPKAKEKFSQ-LAEAYEV 59
Query: 62 LKDPFLRSIY 71
L D R Y
Sbjct: 60 LSDEVKRKQY 69
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 35.6 bits (81), Expect = 0.021
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 21 LDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71
+ K+Y +HPD +Q A + LN A+S ++ + +Y
Sbjct: 134 VKKVYRKAVLVVHPDK-ATGQPYEQYAKMIFME-LNDAWSEFENQGQKPLY 182
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 33.2 bits (76), Expect = 0.058
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
++N +D + + D L K Y +K HPD + + A + + AY
Sbjct: 14 LENCYDVLEVNRE-EFDKQKLAKAYRALARKHHPDRV-KNKEEKLLAEERFRV-IATAYE 70
Query: 61 ILKDPFLRSIY 71
LKD ++ Y
Sbjct: 71 TLKDDEAKTNY 81
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 32.3 bits (74), Expect = 0.062
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+ + + + + K Y ++ HPD K+K D A + ++KAY I
Sbjct: 17 FDPYRVLGVSR--TASQADIKKAYKKLAREWHPD----KNK-DPGAEDRFIQ-ISKAYEI 68
Query: 62 LKDPFLRSIY 71
L + R+ Y
Sbjct: 69 LSNEEKRTNY 78
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 35.0 bits (81), Expect = 0.068
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 281 KNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK- 339
N + + +L + S A G+ V +LG + +KNGV
Sbjct: 174 YNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGV-VVVNLGYNFTGLIA--YKNGVPIK 230
Query: 340 --VLSVGGD 346
+ VG
Sbjct: 231 ISYVPVGMK 239
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 35.0 bits (81), Expect = 0.072
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 23 KIYYNFQKKIHPDNFI-QKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71
K Y + HPDNF ++ K + + A +L DP +R +
Sbjct: 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFID---IAAAKEVLSDPEMRKKF 447
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 33.7 bits (77), Expect = 0.085
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
D L + ++ L+ K Y K+ HPD + K+ + +N Y
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKK---------MNTLYKK 61
Query: 62 LKDPFLRSIY 71
++D +
Sbjct: 62 MEDGVKYAHQ 71
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 32.5 bits (74), Expect = 0.12
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
D L + ++ L+ K Y K+ HPD + K+ + +N Y
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKK---------MNTLYKK 58
Query: 62 LKDPFLRSIY 71
++D +
Sbjct: 59 MEDGVKYAHQ 68
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 32.4 bits (74), Expect = 0.12
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++ + L K N D + K Y K HPD K+ + +A+ K +N A++I
Sbjct: 17 ESLYHVLGLDK--NATSDDIKKSYRKLALKYHPD----KNPDNPEAADKFKE-INNAHAI 69
Query: 62 LKDPFLRSIY 71
L D R+IY
Sbjct: 70 LTDATKRNIY 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 382 KSREIKELLSYQSSVKLNVKLSDKKI-VNITID 413
+ + +K+L Q+S+KL S + + T++
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATME 47
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 30.3 bits (69), Expect = 0.31
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+Y++ + + + L K Y K HPD K+ A+ + AY++
Sbjct: 7 GDYYEILGVSR--GASDEDLKKAYRRLALKFHPD----KNH-APGATEAFKA-IGTAYAV 58
Query: 62 LKDPFLRSIY 71
L +P R Y
Sbjct: 59 LSNPEKRKQY 68
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 30.3 bits (68), Expect = 0.33
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+ + LP+ D + + Y +HP D+ S L LN +
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHP---------DKGGSHALMQELNSLWGT 61
Query: 62 LKDPFLRSIY 71
K
Sbjct: 62 FKTEVYNLRM 71
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 29.6 bits (67), Expect = 0.67
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+Y+D +PK + + K ++ K HPD K+K DA K + +AY
Sbjct: 7 GSYYDILGVPK--SASERQIKKAFHKLAMKYHPD----KNK-SPDAEAKFRE-IAEAYET 58
Query: 62 LKDPFLRSIY 71
L D R Y
Sbjct: 59 LSDANRRKEY 68
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 30.0 bits (68), Expect = 0.69
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M +Y++ ++P+ + D + K Y + HPD K+ +++ + K + +AY
Sbjct: 1 MASYYEILDVPR--SASADDIKKAYRRKALQWHPD----KNPDNKEFAEKKFKEVAEAYE 54
Query: 61 ILKDPFLRSIY 71
+L D R IY
Sbjct: 55 VLSDKHKREIY 65
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 29.9 bits (68), Expect = 0.72
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++Y++ + K + + K Y K HPD +++ D++A K + +AY +
Sbjct: 3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPD----RNQGDKEAEAKFKE-IKEAYEV 55
Query: 62 LKDPFLRSIY 71
L D R+ Y
Sbjct: 56 LTDSQKRAAY 65
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 30.2 bits (68), Expect = 1.2
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPD-NFIQKSKIDQDASVKLSTYLNKAYS 60
K+++ + ++ L + Y HPD + V+ +++A+
Sbjct: 10 KDWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
Query: 61 ILKDPFLRSIY 71
IL + + Y
Sbjct: 68 ILGNEETKREY 78
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++Y+ + ++ + + + HPD K + A L KA I
Sbjct: 20 EDYYTLLGCDE--LSSVEQILAEFKVRALECHPD----KHPENPKAVETFQK-LQKAKEI 72
Query: 62 LKDPFLRSIY 71
L + R+ Y
Sbjct: 73 LTNEESRARY 82
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 28.3 bits (64), Expect = 1.4
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y+ L + + + + Y + HPD K+K + A K + +AY +
Sbjct: 3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPD----KNK-EPGAEEKFKE-IAEAYDV 54
Query: 62 LKDPFLRSIY 71
L DP R I+
Sbjct: 55 LSDPRKREIF 64
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M NY++ + + + + K Y + HPD K+ +++ + K +++AY
Sbjct: 8 MANYYEVLGVQA--SASPEDIKKAYRKLALRWHPD----KNPDNKEEAEKKFKLVSEAYE 61
Query: 61 ILKDPFLRSIY 71
+L D RS+Y
Sbjct: 62 VLSDSKKRSLY 72
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 27.6 bits (62), Expect = 2.9
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M +Y++ ++P+ + + K Y K HPD K+ +++ + + + +AY
Sbjct: 8 MVDYYEVLDVPR--QASSEAIKKAYRKLALKWHPD----KNPENKEEAERRFKQVAEAYE 61
Query: 61 ILKDPFLRSIY 71
+L D R IY
Sbjct: 62 VLSDAKKRDIY 72
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 29.7 bits (66), Expect = 3.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+N++ + K + + + K+HPD K+ + +A +N+AY +
Sbjct: 21 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPD----KNPNNPNAHGDFL-KINRAYEV 73
Query: 62 LKDPFLRSIY 71
LKD LR Y
Sbjct: 74 LKDEDLRKKY 83
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 27.7 bits (62), Expect = 3.3
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPD-NFIQKSKIDQDASVKLSTYLNKAYS 60
+D + + + L K Y K HPD K + +++A+
Sbjct: 8 TKLYDLLGVSP--SANEQELKKGYRKAALKYHPDKPTGDTEKFKE---------ISEAFE 56
Query: 61 ILKDPFLRSIY 71
IL DP R IY
Sbjct: 57 ILNDPQKREIY 67
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2,
prote structure initiative; 2.40A {Agrobacterium
tumefaciens} SCOP: a.295.1.1
Length = 323
Score = 29.0 bits (64), Expect = 4.4
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 44 DQDASVKLSTY-------LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNL--NFSHDFLE 94
D + V+L+ Y + L D L + T NL F+ ++
Sbjct: 191 DDNNGVRLALYFERKAPTIKSGLDFLADDALAQV---------FRTTFNLPDAFAAADVD 241
Query: 95 QQMKWRETLSIIKNKKDKVK-------FMALLQISEPDD----ISVKNKCVSIGIDFGTT 143
+Q E IK+ +D K F + ++ P ++V GI
Sbjct: 242 KQAALIEKSINIKDLQDPEKVGKLLERFTIMWEMQNPSTTYDPLAVFGSSSGYGISPDLL 301
Query: 144 NSL 146
S+
Sbjct: 302 ISI 304
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 28.9 bits (64), Expect = 5.3
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 12/107 (11%)
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+ +A+ N+ FG V +P DI NA N + Y L
Sbjct: 109 PILGLAKQMYPNKHFGFVGVLPKATEDIDEH--MNAIA--CWNDIMRSTNEGKDISIYLL 164
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 354
D N E + + N + + + D+
Sbjct: 165 DNNKREKESDI--------NKEFATLFNDFMNMSESHAEGVVDEDEI 203
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419,
structural genomics, JCSG, PSI, protein structure
initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP:
c.2.1.3 d.81.1.3 PDB: 3cin_A*
Length = 394
Score = 28.6 bits (63), Expect = 6.3
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 13/132 (9%)
Query: 176 DGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGI 235
D ++ + + I + T KF +HI+ +S
Sbjct: 256 DFLALTDDGKNKSKEFTKSSIVKDILGY-DAPHYIKPTGYLEPLGDKKFIAIHIEYVSFN 314
Query: 236 KSPIEI-----------SAQIFITLKKIAENAVNNRIFGAVITVPAY-FNDIQRQFTKNA 283
+ E+ + + L ++ + A++ + FG V V A+ + KN
Sbjct: 315 GATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNPGPAEEKNI 374
Query: 284 AKLAGLNVLRLL 295
++ +R+
Sbjct: 375 PRIIAYEKMRIW 386
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 26.6 bits (59), Expect = 7.8
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+ +D + D ++K Y +HPD K + + A +
Sbjct: 27 KDSWDMLGVKP--GASRDEVNKAYRKLAVLLHPD----KCV-APGSEDAFKA-VVNARTA 78
Query: 62 LKDP 65
L
Sbjct: 79 LLKN 82
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 26.0 bits (58), Expect = 8.9
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
Y+D + + + L K Y K HPD + D + + +++AY +
Sbjct: 8 TGYYDVLGVKP--DASDNELKKAYRKMALKFHPDK-------NPDGAEQFKQ-ISQAYEV 57
Query: 62 LKDPFLRSIY 71
L D R IY
Sbjct: 58 LSDEKKRQIY 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,671,716
Number of extensions: 615083
Number of successful extensions: 1603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1542
Number of HSP's successfully gapped: 78
Length of query: 634
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 535
Effective length of database: 3,937,614
Effective search space: 2106623490
Effective search space used: 2106623490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)