RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8852
(634 letters)
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 184 bits (468), Expect = 2e-55
Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 62
Query: 196 TISSIKRFIARDLKNINTNS----FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 63 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 122
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 123 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 172 bits (436), Expect = 6e-51
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID G+T S V + ++ E++ + G PS V D + +G AK ++P N
Sbjct: 4 VGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV-AFTDTERLIGDAAKNQVAMNPTN 62
Query: 196 TISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFI 247
T+ KR I R + S +P+ N G ++ + P E+S+ +
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLT 122
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY L
Sbjct: 123 KMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 182
Query: 308 DK 309
DK
Sbjct: 183 DK 184
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 152 bits (386), Expect = 2e-43
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 21/203 (10%)
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
++ I AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 2 NRTI-----AVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 56
Query: 364 KNAFLKKLSY------KDVNILMIKSREIKELLSYQSSVKLNVK-----LSDKKIVNITI 412
+ F K + L + + K LS +N+ + K +NI +
Sbjct: 57 EE-FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 115
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+ ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ FF
Sbjct: 116 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 175
Query: 473 LLTSIDPDKAVVFGAAIQANFLS 495
++PD+AV GAA+Q L+
Sbjct: 176 PRKDVNPDEAVAIGAAVQGGVLT 198
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 151 bits (383), Expect = 4e-43
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 12/195 (6%)
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367
++N+ ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + + +
Sbjct: 4 ERNV-----LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 368 LK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNV-KLSDKKIVNITIDMKQFFTIT 421
K + + V L K LS + + + L + +I +F +
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELN 118
Query: 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPD 480
L T+ KAL DA L I++++LVGGSTR+ I + + +FF L SI+PD
Sbjct: 119 ADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPD 178
Query: 481 KAVVFGAAIQANFLS 495
+AV +GAA+QA LS
Sbjct: 179 EAVAYGAAVQAAILS 193
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 135 bits (341), Expect = 8e-38
Identities = 57/133 (42%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 502 DNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDE 561
+ LLLDV PLSLGIET GG++ +I RNTTIP + FTT+ DNQ + I+V +GE
Sbjct: 5 QDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERA 64
Query: 562 LVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 621
+ K+ +L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 65 MTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKG 124
Query: 622 M-NLDEIKSNLKD 633
+ ++I+ +++
Sbjct: 125 RLSKEDIERMVQE 137
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 125 bits (316), Expect = 7e-35
Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 564
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A++I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 565 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKP 618
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKA 115
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 117 bits (293), Expect = 8e-32
Identities = 72/114 (63%), Positives = 92/114 (80%)
Query: 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 566
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 567 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 620
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 98.3 bits (244), Expect = 8e-25
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 38/169 (22%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GKIYVGKKAKITQNIDPK 194
IGID GT N+LV + I PS++ G+I
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVN---------EPSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 195 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
TI +I+ + ++ + A+
Sbjct: 54 ATIKAIRPMRDGV----------------------------IADYTVALVMLRYFINKAK 85
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+N VI VP D++R+ +A AG + + L+ EP +AAI
Sbjct: 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 90.0 bits (222), Expect = 3e-21
Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 7/187 (3%)
Query: 317 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDV 376
V D+GGGT +++++ + V + Y ++ V K
Sbjct: 10 MVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIE 69
Query: 377 NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436
+ S+E EL + S + L S +T+ + + +V + L
Sbjct: 70 IGNVFPSKENDELETTVSGIDL----STGLPRKLTLKGGEVREALRSVVVAIVESVRTTL 125
Query: 437 MDANLTIK---DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493
+ + L GG + ++ + + +++ S +P AV GA + +
Sbjct: 126 EKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDK 185
Query: 494 LSGNRGI 500
++ + +
Sbjct: 186 VNILKKL 192
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 70.7 bits (172), Expect = 6e-15
Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 29/188 (15%)
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367
+ + + + + DLGG T DIS + + + GDS+LG
Sbjct: 2 ELDELDSL-LIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVT------------ 46
Query: 368 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 427
+ + + S + + + D + I+ + +I +N
Sbjct: 47 ---------SAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNE 97
Query: 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVV 484
+ + +++ +V+++GG + I + V + + +V
Sbjct: 98 ALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLV 155
Query: 485 FGAAIQAN 492
G + N
Sbjct: 156 NGMYLIGN 163
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 65.4 bits (159), Expect = 4e-14
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP + +D L + + Q++ HPD F S+ +Q A+V+ S +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 63 KDPFLRSIYLCKLNG 77
+ P +R+ YL L+G
Sbjct: 62 RHPLMRAEYLLSLHG 76
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 64.4 bits (156), Expect = 9e-13
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 29/176 (16%)
Query: 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372
G V D+G T D+ + + V+ + +G D L I K
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
+ + +K V + L NR I
Sbjct: 64 DLAQEA------------------LSHPVMFRQKQVGGPEVSGPIL---EDLANRIIENI 102
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI--DPDKAVVFG 486
L + + ++I VGG + + I + TL+ D A G
Sbjct: 103 RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 37.3 bits (86), Expect = 5e-04
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPD-NFIQKSKIDQDASVKLSTYLNKAYS 60
K+++ + +M L + Y HPD + ++ +++A+
Sbjct: 16 KDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 61 ILKDPFLRSIYLCKLNG 77
IL + + Y + +G
Sbjct: 74 ILGNEETKKKYDLQRSG 90
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 36.6 bits (84), Expect = 6e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y+ L + + + + Y + HPD + ++ + +AY +
Sbjct: 3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIA------EAYDV 54
Query: 62 LKDPFLRSIY 71
L DP R I+
Sbjct: 55 LSDPRKREIF 64
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 36.1 bits (83), Expect = 0.001
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+ + LP+ D + + Y +HPD + S L LN +
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD---------KGGSHALMQELNSLWGT 61
Query: 62 LKDPFLRSIY 71
K
Sbjct: 62 FKTEVYNLRM 71
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 34.1 bits (78), Expect = 0.009
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 23 KIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71
K+Y +HPD + + + + LN A+S ++ + +Y
Sbjct: 52 KVYRKAVLVVHPDKA--TGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 32.8 bits (74), Expect = 0.031
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
D L + ++ L+ K Y K+ HPD + K+ + +N Y
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKK---------MNTLYKK 58
Query: 62 LKDPFLRSIY 71
++D +
Sbjct: 59 MEDGVKYAHQ 68
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 33.3 bits (75), Expect = 0.078
Identities = 26/199 (13%), Positives = 60/199 (30%), Gaps = 26/199 (13%)
Query: 295 LNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 354
++E + A+ + G D+ ++ +NG + G F
Sbjct: 79 MSELSCHAMGASFIWPNVHTVID-----IGGQDVKVIHVENGTMTNFQMNDKCAAGTGRF 133
Query: 355 DYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSV-KLNVKLSDKKIVNI-TI 412
+ A + ++ D+ L KS + + S + + V K + I
Sbjct: 134 -------LDVMANILEVKVSDLAELGAKSTKRVAISSTCTVFAESEVISQLSKGTDKIDI 186
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
++ ++ + + +V++ GG + + +
Sbjct: 187 IAGIHRSVASRVIGLAN------------RVGIVKDVVMTGGVAQNYGVRGALEEGLGVE 234
Query: 473 LLTSIDPDKAVVFGAAIQA 491
+ TS GAA+ A
Sbjct: 235 IKTSPLAQYNGALGAALYA 253
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 32.6 bits (73), Expect = 0.086
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 11/155 (7%)
Query: 317 AVYDLGGGTFDISILKFKNGVF-KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 375
V +LG + K + + VG ++ D S+ +++ +
Sbjct: 10 VVVNLGYNFTGLIAYKNGVPIKISYVPVGMK-HVIKDVSAVLDTSFEESE--RLIITHGN 66
Query: 376 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 435
+K EI+ +++K I++ + I +A
Sbjct: 67 AVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR-----EIMSKSKK--FFREVEA 119
Query: 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+ I V+L GG ++ I+E + FK
Sbjct: 120 KIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFK 154
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal
oligomerisation domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 30.9 bits (70), Expect = 0.10
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 91 DFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
FL +Q++ RE L I+ KD+ + + ++
Sbjct: 14 AFLMEQLELREELDEIEQAKDEARLESFIK 43
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 32.4 bits (73), Expect = 0.12
Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 41/180 (22%)
Query: 347 SNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------------- 393
+L G D L I+ ++ + I+ R+IKE L Y
Sbjct: 32 LDLAGRDLTDYLM-KILTERGYSFVTTAEREIV----RDIKEKLCYVALDFENEMATAAS 86
Query: 394 -SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL-----------LSSKALMDANL 441
SS++ + +L D +++ I + F + L + + +S D ++
Sbjct: 87 SSSLEKSYELPDGQVITIG---NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI 143
Query: 442 TIKDINNVILVGGSTRMKHIHEGVSN--------FFKTTLLTSIDPDKAVVFGAAIQANF 493
N ++ GG+T I + + K ++ + +V G +I A+
Sbjct: 144 RKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 150
Score = 28.4 bits (63), Expect = 1.4
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 62 LKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQI 121
L + R+ L ++ D+ +L L++ WR+ +SII D +
Sbjct: 1 LSSKYSRNTELRRVEDNDIY-RLA-----KILDENSCWRKLMSIIPKGMDVQACSGAGCL 54
Query: 122 SEPDDISVKNK 132
+ P +I K
Sbjct: 55 NFPAEIKKGFK 65
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 26.7 bits (59), Expect = 7.2
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 317 AVYDLGGGTFDISILKFKNGVFKVLSVGG--------DSNLGGDDFD 355
A+ DLG G+ D +I+ + + V G + LG +D
Sbjct: 7 AILDLGAGSTDAAIVNAEGQITAVHLAGAGNMVSLLIKTELGLEDLS 53
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 26.7 bits (59), Expect = 7.9
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 317 AVYDLGGGTFDISILKFKNGVFKVLSVGG--------DSNLGGDDFD 355
A+ DLG G+ D SI+ K + G LG +D
Sbjct: 7 AILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRY 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.396
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,377,980
Number of extensions: 117998
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 32
Length of query: 634
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 543
Effective length of database: 1,158,166
Effective search space: 628884138
Effective search space used: 628884138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)