BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8853
(242 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340786243|ref|YP_004751708.1| hypothetical protein CFU_1053 [Collimonas fungivorans Ter331]
gi|340551510|gb|AEK60885.1| hypothetical protein CFU_1053 [Collimonas fungivorans Ter331]
Length = 241
Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 182/243 (74%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G D N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGGDIDANPRLRLAVDKASDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + E +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGSGGL--EGVNYEEVRYEGYGINGAAIIVDCMTDNRIRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV FMFKHCGQLLF P T ++ L++ ALE GAED + D + I +I++P
Sbjct: 119 KFGGNMGTEGSVAFMFKHCGQLLFAPGTNEDALMEAALEAGAEDVITDDEGGIEVISAPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE +GFKAE + I+M+P T VF +AIK+QKLL+ L+ L DV+++Y+NA+
Sbjct: 179 DFAALKGALEKSGFKAEMAEIIMKPATETVFAGDDAIKMQKLLDALENLDDVQEIYSNAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|445499047|ref|ZP_21465902.1| YebC-like DNA-binding protein [Janthinobacterium sp. HH01]
gi|444789042|gb|ELX10590.1| YebC-like DNA-binding protein [Janthinobacterium sp. HH01]
Length = 241
Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 173/243 (71%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G T N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGGDLTSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + Y EVRYEGY V GAA+IVDC+T+NR+RTV+ +RN FN
Sbjct: 61 MPKDNVQRAITRGTGG--EDGAAYEEVRYEGYGVGGAAVIVDCMTDNRVRTVAEVRNAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ EGSV FMFKHCGQ LF P T ++ L+++ALE GAED + D++ ++ P
Sbjct: 119 KNGGNMGNEGSVAFMFKHCGQFLFAPGTNEDALMEVALEAGAEDVVADEEGGFEVLCGPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GFKAE + I+M+P T VF A+K+QKLL+ L+ L DV++VY+N L
Sbjct: 179 DFAAVKDALDAAGFKAEVAEIIMKPATETVFTGDNAVKMQKLLDALEALDDVQEVYSNTL 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|409407305|ref|ZP_11255756.1| hypothetical protein GWL_29100 [Herbaspirillum sp. GW103]
gi|386433056|gb|EIJ45882.1| hypothetical protein GWL_29100 [Herbaspirillum sp. GW103]
Length = 241
Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 180/241 (74%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG++ TR+++E+ VA G +PDTN +LRLA+++A DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGRVWTRLIKEITVAARMGGGDPDTNPRLRLAVDRASDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGTGAL--DGVNYEEVRYEGYGINGAAIIVDCMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F+FKHCGQL++ P T +N +++ ALE GAED + D + I ++T+P+
Sbjct: 119 KFGGNMGTEGSVAFLFKHCGQLMYAPGTDENAVMEAALEAGAEDVITDDEGGIEVLTAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K+++E GFKAE + I M+P T VF + +++QKLL+ L+ L D +++YTNA+
Sbjct: 179 DFAAVKSAMEAAGFKAEVAEITMKPSTETVFAGEDGVRMQKLLDALENLDDTQELYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|300312851|ref|YP_003776943.1| hypothetical protein Hsero_3556 [Herbaspirillum seropedicae SmR1]
gi|124483624|emb|CAM32685.1| Conserved Hypothetical [Herbaspirillum seropedicae]
gi|300075636|gb|ADJ65035.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 241
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 180/241 (74%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG++ TR+++E+ VA G +PDTN +LRLA+++A DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGRVWTRLIKEITVAARMGGGDPDTNPRLRLAVDRASDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGTGAL--DGVNYEEVRYEGYGINGAAIIVDCMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F+FKHCGQL++ P T +N +++ ALE GAED + D++ I ++T+P+
Sbjct: 119 KFGGNMGTEGSVAFLFKHCGQLMYAPGTDENAVMEAALEAGAEDVITDEEGGIEVLTAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K ++E GFKAE + I M+P T VF + +++QKLL+ L+ L D +++YTNA+
Sbjct: 179 DFSAVKAAMEAAGFKAEVAEITMKPSTETVFAGEDGVRMQKLLDALENLDDTQELYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|399017851|ref|ZP_10720040.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum
sp. CF444]
gi|398102618|gb|EJL92798.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum
sp. CF444]
Length = 241
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 178/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TR+++E+ VA G PD N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRLIKEITVAARMGGGEPDANPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGTGTL--DGVNYEEVRYEGYGINGAAIIVDCMTDNRIRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV FMFKHCGQL++ P ++ +++ ALE GA+D + D++ I ++T P
Sbjct: 119 KFGGNMGTEGSVSFMFKHCGQLMYAPGVSEDAVMEAALEAGADDVITDEEGGIEVLTPPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K ++E GFKAE + I+M+P T VF +A+K+QKLL+ L+ L DV+++Y+NA+
Sbjct: 179 DFAVVKAAMEKAGFKAEMAEIIMKPATETVFTGDDAVKMQKLLDALENLDDVQEIYSNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|374366982|ref|ZP_09625053.1| hypothetical protein OR16_13789 [Cupriavidus basilensis OR16]
gi|373101429|gb|EHP42479.1| hypothetical protein OR16_13789 [Cupriavidus basilensis OR16]
Length = 241
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 177/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK D+KRGK+ TR+++E+ VA G +PD+N +LRL+++KA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADSKRGKVWTRLIKEITVAAKLGGADPDSNPRLRLSMDKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +NY E+RYEGY + GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGVNYEEIRYEGYGLAGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ EGSV FMF HCGQ LF P T ++ L++ ALE GA+D + + D I ++ P+
Sbjct: 119 KNGGNMGAEGSVAFMFTHCGQFLFAPGTPEDKLMESALEAGADDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSTVKAALEAAGFKAEMADVTMKPQNEVSFTGDDAVKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|427400808|ref|ZP_18892046.1| UPF0082 protein [Massilia timonae CCUG 45783]
gi|425720321|gb|EKU83244.1| UPF0082 protein [Massilia timonae CCUG 45783]
Length = 241
Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 175/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + +N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGSDIASNPRLRLAVEKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + E +NY EVRYEGY + GAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGSGEL--EGVNYEEVRYEGYGIGGAAIIVDCLTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV FMFKH GQ LF P ++ L++ ALE GA+D + D++ ++ P
Sbjct: 119 KFGGNMGTEGSVAFMFKHTGQFLFAPGVDEDKLMEAALEAGADDVMADEEGGFEVLCDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + ++M+P T VF +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 AFSAVKEALEAAGFKAEVAEVIMKPATETVFTGEDAVKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|395763770|ref|ZP_10444439.1| hypothetical protein JPAM2_18739 [Janthinobacterium lividum PAMC
25724]
Length = 241
Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 177/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + TN +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGADAITNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + + + NY EVRYEGY V GAA+IV+C+T+N++RTV+ +RN FN
Sbjct: 61 MPKDNVQRAINRGSGGV--DGANYEEVRYEGYGVGGAAVIVECMTDNKVRTVAEVRNAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ EGSV FMF+HCGQLLF P T ++ L++ ALE GA+D + D++ ++T
Sbjct: 119 KNGGNMGNEGSVAFMFQHCGQLLFAPGTDEDKLMEAALEAGADDVIADEEGGFEVLTPVH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + ++M+P T V+ +AIK+QKL++ L+ L DV++V+TNAL
Sbjct: 179 DFATVKEALEAAGFKAEVAEVIMKPATETVYAGDDAIKMQKLIDALELLDDVQEVFTNAL 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|398835766|ref|ZP_10593123.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum
sp. YR522]
gi|398215204|gb|EJN01769.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum
sp. YR522]
Length = 241
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 177/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D +RG+I TR+++E+ VA G + DTN +LRLA+++A DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDERRGRIWTRLIKEITVAARMGGGDADTNPRLRLAVDRASDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGTGAL--DGVNYEEVRYEGYGINGAAIIVDCLTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV FMF HCGQL++ P T +N +++ ALE GAED D++ I ++T P+
Sbjct: 119 KFGGNMGTEGSVAFMFTHCGQLMYAPGTDENAVMEAALEAGAEDVQTDEEGGIEVLTGPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K ++E GFKAE + I+M+P T VF + +++QKLL+ L+ L D +++YTNA+
Sbjct: 179 DFSAVKAAMEAAGFKAEVADIIMKPSTETVFAGEDGVRMQKLLDALENLDDTQQLYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|134093819|ref|YP_001098894.1| hypothetical protein HEAR0561 [Herminiimonas arsenicoxydans]
gi|166227331|sp|A4G2N0.1|Y561_HERAR RecName: Full=Probable transcriptional regulatory protein HEAR0561
gi|133737722|emb|CAL60767.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 242
Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 175/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TR+++E+ VA G N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRLIKEITVAARMGGGDIAANPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + E +NY E+RYEGY +NGAAI+VDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVTRAIQRGSGGL--EGVNYEEIRYEGYGINGAAILVDCMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F+FKHCGQ F P T ++ L++ ALE GAED D++ I +I P
Sbjct: 119 KFGGNMGTEGSVAFLFKHCGQFFFAPGTDEDKLMEAALEAGAEDVTTDEEGGIEVICPPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L GFKAE + +VM+P T VF+ +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSAVKDALAAAGFKAELAEVVMKPATETVFEGDDAVKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|152981153|ref|YP_001352234.1| hypothetical protein mma_0544 [Janthinobacterium sp. Marseille]
gi|166227325|sp|A6SVD7.1|Y544_JANMA RecName: Full=Probable transcriptional regulatory protein mma_0544
gi|151281230|gb|ABR89640.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 241
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D +RGKI TR+++E+ VA G N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDERRGKIWTRLIKEITVAARMGGGDVAANPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + E +NY E+RYEGY +NGAA++VDC+T+NR+RTV+ +R+ F
Sbjct: 61 MPKDNVTRAIQRGSGGL--EGVNYEEIRYEGYGINGAAVLVDCMTDNRVRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV FMFKHCGQ F P T ++ L++ ALE GA+D D++ I +I P
Sbjct: 119 KFGGNMGTEGSVAFMFKHCGQFFFAPGTDEDKLMEAALEAGADDVTTDEEGGIEVICPPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L GFKAE + +VM+P T VF+ +AIK+QKLL+ L+ L DV+++YTNA+
Sbjct: 179 DFSAVKDALTAAGFKAELAEVVMKPATETVFQGDDAIKMQKLLDALENLDDVQEIYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|82703835|ref|YP_413401.1| hypothetical protein Nmul_A2722 [Nitrosospira multiformis ATCC
25196]
gi|119391326|sp|Q2Y5G2.1|Y2722_NITMU RecName: Full=Probable transcriptional regulatory protein
Nmul_A2722
gi|82411900|gb|ABB76009.1| Protein of unknown function DUF28 [Nitrosospira multiformis ATCC
25196]
Length = 240
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 178/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +P++N +LRLA++KA + N
Sbjct: 1 MAGHSKWANIKHKKAAQDAKRGKIFTRLIKEITVAARLGGGDPNSNPRLRLAVDKAYEQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK N+ RAI++ + ++ E +NY E+RYEGY + GAA++VDC+T+NR+RTV+++R+ F
Sbjct: 61 MPKENVERAIKRGSGDL--EGVNYEEIRYEGYGIAGAAVLVDCMTDNRVRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV F+FKHCGQLLF P T ++ L+++ALE GAED + D I +IT+P
Sbjct: 119 KYGGNLGTDGSVGFLFKHCGQLLFAPGTDEDKLMEVALEAGAEDIIAHDDGSIEVITAPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F+ +K +LE GFKAE + + M+P +++K+QKLL+ L+ + DV++VYT A+
Sbjct: 179 EFVAVKEALEKAGFKAELAEVTMKPVNETELTGDDSVKMQKLLDALESIDDVQEVYTTAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|163857411|ref|YP_001631709.1| hypothetical protein Bpet3099 [Bordetella petrii DSM 12804]
gi|226703704|sp|A9ITM2.1|Y3099_BORPD RecName: Full=Probable transcriptional regulatory protein Bpet3099
gi|163261139|emb|CAP43441.1| conserved hypothetical protein [Bordetella petrii]
Length = 243
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 171/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + NY EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGA--DGANYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ ALE GAED D + I +I +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTAEDVVMEAALEAGAEDVTTDDEGVIEVICAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + E G KAE GI+M+P +A+K+QKLL+ L+ L DV++VYT +
Sbjct: 179 DYAAVRQAFEAAGLKAEVEGIIMKPQNETELTGEDAVKMQKLLDALEGLDDVQEVYTT-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|339481877|ref|YP_004693663.1| hypothetical protein Nit79A3_0377 [Nitrosomonas sp. Is79A3]
gi|338804022|gb|AEJ00264.1| UPF0082 protein yeeN [Nitrosomonas sp. Is79A3]
Length = 241
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 178/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E+ VA G +PD+N +LRLA++KA D N
Sbjct: 1 MAGHSKWANIKHKKAAQDAKRGKVFTRLIKEVTVAARMGGGDPDSNPRLRLAVDKAYDQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ + + + +Y E+RYEGY + GAA++VDC+T+NR+RTV+++R+ F
Sbjct: 61 MPKDNVERAIKRGSGTL--DGADYEEIRYEGYGIAGAAVMVDCMTDNRVRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV F+FKHCGQL+F P T ++ L+++ALE GAED + ++D I +IT P
Sbjct: 119 KYGGNLGTDGSVSFLFKHCGQLVFAPGTNEDKLIEVALEGGAEDVISNEDGSIEVITDPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+FI +K +LE GFKAE + + M+P V +A+K+QKLL+ L+ L DV+ VYT A+
Sbjct: 179 EFINVKEALEKAGFKAELAEVTMKPSNEAVLSGDDAVKMQKLLDALENLDDVQNVYTTAI 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|291612981|ref|YP_003523138.1| hypothetical protein Slit_0511 [Sideroxydans lithotrophicus ES-1]
gi|291583093|gb|ADE10751.1| protein of unknown function DUF28 [Sideroxydans lithotrophicus
ES-1]
Length = 243
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 177/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRG+I TR+++E+ VA G ++PD N +LRLA+EKA D N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGQIFTRLIKEITVASKLGGSDPDINPRLRLAMEKAYDQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ + E ++Y+E+RYEGY +NGAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVERAIKRGAGEL--EGVDYMELRYEGYGINGAAVMVDCMTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV F+FKHCG ++F P T +N L+++AL+ GAED + + D I +ITSP
Sbjct: 119 KYGGNLGTDGSVSFLFKHCGHMIFAPGTDENALMEVALDAGAEDIVNNDDGSIEVITSPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ +K LE GFK E + MRP +VF +A K+QKLL+ L+ + DV++VYTNA+
Sbjct: 179 DFVAVKQRLEAAGFKPEMGEVTMRPENEVVFTGEDAAKMQKLLDALEDVGDVQEVYTNAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|452125602|ref|ZP_21938185.1| hypothetical protein F783_08789 [Bordetella holmesii F627]
gi|452128965|ref|ZP_21941541.1| hypothetical protein H558_08573 [Bordetella holmesii H558]
gi|451920697|gb|EMD70842.1| hypothetical protein F783_08789 [Bordetella holmesii F627]
gi|451924835|gb|EMD74975.1| hypothetical protein H558_08573 [Bordetella holmesii H558]
Length = 243
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 174/243 (71%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LRLA +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRLAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + +Y EVRYEGY V GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGA--DGADYEEVRYEGYGVGGAAVIVDCMTDNRTRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ LF P + ++ ++++ALE GAED L D++ I ++ +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFLFAPGSSEDKVMEVALEAGAEDVLTDEEGGIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G KAE GI+M+ +AIK+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DYAALRQAFDTAGLKAEVDGIIMKALNETELTGDDAIKMQKLLDVLEGLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|33593302|ref|NP_880946.1| hypothetical protein BP2308 [Bordetella pertussis Tohama I]
gi|384204597|ref|YP_005590336.1| hypothetical protein BPTD_2267 [Bordetella pertussis CS]
gi|408414767|ref|YP_006625474.1| hypothetical protein BN118_0760 [Bordetella pertussis 18323]
gi|49037283|sp|Q7VWE9.1|Y2308_BORPE RecName: Full=Probable transcriptional regulatory protein BP2308
gi|33572658|emb|CAE42581.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332382711|gb|AEE67558.1| hypothetical protein BPTD_2267 [Bordetella pertussis CS]
gi|401776937|emb|CCJ62185.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 243
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 172/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ E+ Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGES--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +EGSV FMFKHCGQ +F P T + T+++ ALE GAED D++ I ++ +P+
Sbjct: 119 KHGGNLGQEGSVAFMFKHCGQFVFAPGTSEETVMEAALEAGAEDVATDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ + E G KAE G+VM+ +A+K+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DFTAVRQAFEAAGLKAEVDGVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|33597014|ref|NP_884657.1| hypothetical protein BPP2422 [Bordetella parapertussis 12822]
gi|33600856|ref|NP_888416.1| hypothetical protein BB1871 [Bordetella bronchiseptica RB50]
gi|410472426|ref|YP_006895707.1| hypothetical protein BN117_1748 [Bordetella parapertussis Bpp5]
gi|412338957|ref|YP_006967712.1| hypothetical protein BN112_1644 [Bordetella bronchiseptica 253]
gi|427815440|ref|ZP_18982504.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|49036533|sp|Q7WL78.1|Y1871_BORBR RecName: Full=Probable transcriptional regulatory protein BB1871
gi|49037284|sp|Q7W7T8.1|Y2422_BORPA RecName: Full=Probable transcriptional regulatory protein BPP2422
gi|33566465|emb|CAE37718.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33568456|emb|CAE32368.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|408442536|emb|CCJ49081.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|408768791|emb|CCJ53561.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
gi|410566440|emb|CCN24001.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 243
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 171/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ E+ Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGES--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +EGSV FMFKHCGQ +F P T + +++ ALE GAED D++ I ++ +P+
Sbjct: 119 KHGGNLGQEGSVAFMFKHCGQFVFAPGTSEEAVMEAALEAGAEDIATDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ + E G KAE G+VM+ +A+K+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DFTAVRQAFEAAGLKAEVDGVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|410420945|ref|YP_006901394.1| hypothetical protein BN115_3165 [Bordetella bronchiseptica MO149]
gi|408448240|emb|CCJ59921.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
Length = 243
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 171/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ E+ Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGES--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +EGSV FMFKHCGQ +F P T + +++ ALE GAED D++ I ++ +P+
Sbjct: 119 KHGGNLGQEGSVAFMFKHCGQFVFAPGTSEEAVMEAALEAGAEDVATDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ + E G KAE G+VM+ +A+K+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DFTAVRQAFEAAGLKAEVDGVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|427819703|ref|ZP_18986766.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427824823|ref|ZP_18991885.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410570703|emb|CCN18900.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410590088|emb|CCN05166.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 243
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 171/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ E+ Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGES--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +EGSV FMFKHCGQ +F P T + +++ ALE GAED D++ I ++ +P+
Sbjct: 119 KHGGNLGQEGSVAFMFKHCGQFVFAPGTSEEAVMEAALEAGAEDVATDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ + E G KAE G+VM+ +A+K+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DFTAVRQAFETAGLKAEVDGVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|73542207|ref|YP_296727.1| hypothetical protein Reut_A2522 [Ralstonia eutropha JMP134]
gi|119391313|sp|Q46YA0.1|Y2522_CUPPJ RecName: Full=Probable transcriptional regulatory protein
Reut_A2522
gi|72119620|gb|AAZ61883.1| Protein of unknown function DUF28 [Ralstonia eutropha JMP134]
Length = 241
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/241 (53%), Positives = 179/241 (74%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +PD+N +LRL+++KA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAAKLGGGDPDSNPRLRLSMDKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +NY E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGVNYEEIRYEGYGLSGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ LF P T ++ L+D ALE GA+D + ++D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLFAPGTPEDKLMDAALEAGADDVVTNEDGSIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSAVKAALEAAGFKAEVADVVMKPQNEVDFTGDDAVKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|311105296|ref|YP_003978149.1| hypothetical protein AXYL_02110 [Achromobacter xylosoxidans A8]
gi|310759985|gb|ADP15434.1| hypothetical protein AXYL_02110 [Achromobacter xylosoxidans A8]
Length = 243
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 172/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ E Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGEA--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ ALE GAED D++ I ++ +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTSEDKVMEAALEAGAEDVTTDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++ + G KAE GIVM+ +AIK+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DYAAVRSAFDAAGLKAEVDGIVMKALNETELAGEDAIKMQKLLDALEGLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|187478698|ref|YP_786722.1| hypothetical protein BAV2207 [Bordetella avium 197N]
gi|119372126|sp|Q2KYW0.1|Y2207_BORA1 RecName: Full=Probable transcriptional regulatory protein BAV2207
gi|115423284|emb|CAJ49817.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 243
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 173/243 (71%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LRLA +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRLAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ +N Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNVQRAIQRGAGGADGDN--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ LF P + ++ ++++AL+ GAED + D + I +I +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFLFAPGSSEDKVMEVALDAGAEDVITDDEGGIEVICAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + E G KAE ++M+ + +AIK+QKLL+ L+ L DV++VYTN +
Sbjct: 179 DYPALRQAFEAAGLKAEVDAVIMKAQSETELTGDDAIKMQKLLDALEGLDDVQEVYTN-V 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|325981220|ref|YP_004293622.1| hypothetical protein NAL212_0515 [Nitrosomonas sp. AL212]
gi|325530739|gb|ADZ25460.1| protein of unknown function DUF28 [Nitrosomonas sp. AL212]
Length = 241
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 177/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +PD+N +LRLA++KA N
Sbjct: 1 MAGHSKWANIKHKKAAQDAKRGKIFTRLIKEITVAARMGGGDPDSNPRLRLAMDKAYGQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI++ + + ++Y E+RYEGY + GAA++VDC+T+NR+RTV+++R+ F
Sbjct: 61 MPKDNIERAIKRGCGAL--DGVDYEEIRYEGYGIAGAAVMVDCMTDNRVRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV F+FKHCGQL+F P T ++ +++ ALE GAED + +D I ++T+P
Sbjct: 119 KYGGNLGTDGSVSFLFKHCGQLIFAPGTNEDEIIEAALENGAEDVIGSEDGSIEVVTAPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+FI IK++LE GFKAE + + M+P V EAIK+QKLL+ L+ L DV+ VYT A+
Sbjct: 179 EFINIKDALEKAGFKAELAEVTMKPGNETVLSGDEAIKMQKLLDALENLDDVQNVYTTAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|194288988|ref|YP_002004895.1| hypothetical protein RALTA_A0859 [Cupriavidus taiwanensis LMG
19424]
gi|226695990|sp|B3R3E4.1|Y859_CUPTR RecName: Full=Probable transcriptional regulatory protein
RALTA_A0859
gi|193222823|emb|CAQ68826.1| conserved hypothetical protein, DUF28 [Cupriavidus taiwanensis LMG
19424]
Length = 241
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/243 (53%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +PD+N +LRL+++KA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAAKLGGGDPDSNPRLRLSMDKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +NY E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGVNYEEIRYEGYGLSGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ LF P T ++ L+D ALE GA+D + + D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLFAPGTPEDKLMDAALEAGADDVVTNDDGSIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +A K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSAVKAALEGAGFKAEVADVVMKPQNEVSFSGDDAAKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|237747752|ref|ZP_04578232.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229379114|gb|EEO29205.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 243
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 172/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DAKRGKI TR+++E+ VA G ++N +LRLA EKA AN
Sbjct: 1 MSGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGGDINSNPRLRLAAEKATAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK N+ RAI + + + +NY E+RYEGY +NGAAIIVDC+T+NR+RTVS +R+ F+
Sbjct: 61 MPKENVQRAIARGTGTL--DGVNYEEIRYEGYGINGAAIIVDCLTDNRVRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV FMFKHCGQL F P T ++ L+++ALE GAED + D + +I +P+
Sbjct: 119 KFGGNMGTEGSVSFMFKHCGQLFFAPGTDEDKLMEVALEAGAEDIISDDEGGFEVICAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GF E + IVM+P T F +A K+QKLL+ L+ L DV+ VYTNA+
Sbjct: 179 DFAQVKDALEKAGFIPEMAEIVMKPDTETEFTGTDAEKMQKLLDALENLDDVQDVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|423016690|ref|ZP_17007411.1| hypothetical protein AXXA_19667 [Achromobacter xylosoxidans AXX-A]
gi|338780272|gb|EGP44685.1| hypothetical protein AXXA_19667 [Achromobacter xylosoxidans AXX-A]
Length = 243
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 170/243 (69%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ E Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGEA--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ ALE GAED D++ I +I +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDQVMEAALEAGAEDVATDEEGVIEVICAPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G KAE GIVM+ +AIK+QKLL+ L+ L DV++VYT +
Sbjct: 179 DYAAVRKAFDDAGLKAEVDGIVMKALNETELAGEDAIKMQKLLDALEGLDDVQEVYTT-V 237
Query: 240 IFD 242
IFD
Sbjct: 238 IFD 240
>gi|421747152|ref|ZP_16184894.1| hypothetical protein B551_10753 [Cupriavidus necator HPC(L)]
gi|409774259|gb|EKN55903.1| hypothetical protein B551_10753 [Cupriavidus necator HPC(L)]
Length = 241
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 177/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +PD+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAAKLGGGDPDSNPRLRLAMDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGASYEEIRYEGYGLSGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ LF P T ++ L++ ALE GA+D + +D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLFAPGTPEDKLMEAALEAGADDVVTHEDGAIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFGAVKAALEAAGFKAEVADVVMKPQNEVSFSGDDAVKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|421486657|ref|ZP_15934194.1| hypothetical protein QWC_28548 [Achromobacter piechaudii HLE]
gi|400195117|gb|EJO28116.1| hypothetical protein QWC_28548 [Achromobacter piechaudii HLE]
Length = 243
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 171/243 (70%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGDA--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ ALE GAED L D++ I ++ +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDKVMEAALEAGAEDVLTDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G KAE GIVM+ +AIK+QKLL+ L+ L DV++VYT +
Sbjct: 179 DYAAVRKAFDDAGLKAEVDGIVMKALNETELAGEDAIKMQKLLDALEGLDDVQEVYTT-V 237
Query: 240 IFD 242
IFD
Sbjct: 238 IFD 240
>gi|422321645|ref|ZP_16402690.1| hypothetical protein HMPREF0005_01918 [Achromobacter xylosoxidans
C54]
gi|317403476|gb|EFV83984.1| hypothetical protein HMPREF0005_01918 [Achromobacter xylosoxidans
C54]
Length = 243
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 170/243 (69%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGDA--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ ALE GAED D++ I ++ +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDQVMEAALEAGAEDVTTDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G KAE GIVM+ +AIK+QKLL+ L+ L DV++VYT +
Sbjct: 179 DYAAVRKAFDDAGLKAEVDGIVMKALNETELAGEDAIKMQKLLDALESLDDVQEVYTT-V 237
Query: 240 IFD 242
IFD
Sbjct: 238 IFD 240
>gi|30248234|ref|NP_840304.1| hypothetical protein NE0210 [Nitrosomonas europaea ATCC 19718]
gi|33516990|sp|Q82XP6.1|Y210_NITEU RecName: Full=Probable transcriptional regulatory protein NE0210
gi|30180119|emb|CAD84121.1| Domain of unknown function DUF28 [Nitrosomonas europaea ATCC 19718]
Length = 241
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 175/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +P++N +LRLA++KA N
Sbjct: 1 MAGHSKWANIKHKKAAQDAKRGKIFTRLIKEITVAARLGGGDPNSNPRLRLAMDKAFGHN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ + E +NY E+RYEGY ++GAA++VDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNVERAIKRGCGEL--EGVNYEEIRYEGYGISGAAVMVDCMTDNRTRTVAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++FKHCGQLLF P + LL+ ALE GAED + + D + +IT P
Sbjct: 119 KHGGNLGTDGSVAYLFKHCGQLLFAPGVGEAQLLEAALEAGAEDVISNDDGSLEVITGPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ ++++LE GFKAE + + +P ++ + +A+K+QKLL+ L+ + DV+ VYT+A+
Sbjct: 179 TFVSVRDTLEKAGFKAELAEVTWKPENEVLLQGDDAVKMQKLLDALEDIDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|359799026|ref|ZP_09301595.1| hypothetical protein KYC_18815 [Achromobacter arsenitoxydans SY8]
gi|359363164|gb|EHK64892.1| hypothetical protein KYC_18815 [Achromobacter arsenitoxydans SY8]
Length = 243
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 170/243 (69%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGDA--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ ALE GAED D++ I ++ +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDQVMEAALEAGAEDVTTDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G KAE GIVM+ +AIK+QKLL+ L+ L DV++VYT +
Sbjct: 179 DYAAVRKAFDDAGLKAEVDGIVMKALNETELAGEDAIKMQKLLDALEGLDDVQEVYTT-V 237
Query: 240 IFD 242
IFD
Sbjct: 238 IFD 240
>gi|430806924|ref|ZP_19434039.1| hypothetical protein D769_11611 [Cupriavidus sp. HMR-1]
gi|429500781|gb|EKZ99137.1| hypothetical protein D769_11611 [Cupriavidus sp. HMR-1]
Length = 241
Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E+ VA G D+N +LRLA+EKA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEITVAAKLGGGEVDSNPRLRLAMEKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E NY E+RYEGY + GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGANYEEIRYEGYGLAGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ LF P T ++ L+D ALE GA+D + + D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLFAPGTPEDKLMDAALEAGADDVVTNDDESIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +AIK+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFGAVKAALEAAGFKAEVADVVMKPQNEVSFVGDDAIKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|393775963|ref|ZP_10364260.1| Alpha-l-glutamate ligase [Ralstonia sp. PBA]
gi|392716906|gb|EIZ04483.1| Alpha-l-glutamate ligase [Ralstonia sp. PBA]
Length = 241
Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 169/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGADADSNPRLRLAMDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E NY E+RYEGY + GAA+IVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGANYEEIRYEGYGLGGAAVIVDCMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ EGSV FMF HCGQ +F P T ++ L++ ALE GAED +D I + P
Sbjct: 119 KNGGNMGTEGSVAFMFTHCGQFIFAPGTSEDALMEAALEAGAEDVTTSEDGSIEVTCGPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + + M+P + +A+K+QKLL+ L+ L DV+ V+TNAL
Sbjct: 179 DFSAVKTALEAAGFKAEMAEVTMKPQNEVALTGDDAVKMQKLLDALENLDDVQDVFTNAL 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|94309730|ref|YP_582940.1| hypothetical protein Rmet_0785 [Cupriavidus metallidurans CH34]
gi|118574400|sp|Q1LQA5.1|Y785_RALME RecName: Full=Probable transcriptional regulatory protein Rmet_0785
gi|93353582|gb|ABF07671.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length = 241
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E+ VA G D+N +LRLA+EKA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEITVAAKLGGGEFDSNPRLRLAMEKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E NY E+RYEGY + GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGANYEEIRYEGYGLAGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ LF P T ++ L+D ALE GA+D + + D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLFAPGTPEDKLMDAALEAGADDVVTNDDESIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFGAVKAALEAAGFKAEVADVVMKPQNEVSFVGDDAVKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 I 240
+
Sbjct: 239 V 239
>gi|293604474|ref|ZP_06686879.1| YebC like protein [Achromobacter piechaudii ATCC 43553]
gi|292817055|gb|EFF76131.1| YebC like protein [Achromobacter piechaudii ATCC 43553]
Length = 243
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 170/243 (69%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PD+N +LR+A +KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDSNPRLRMAWDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + Y EVRYEGY + GAA+IVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPKDNIQRAIQRGAGGADGDA--YEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +EGSV FMFKHCGQ +F P T ++ +++ AL+ GAED D++ I ++ +P+
Sbjct: 119 KNGGNLGQEGSVAFMFKHCGQFVFAPGTPEDKVMEAALDAGAEDVTTDEEGVIEVVCAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G KAE GIVM+ +AIK+QKLL+ L+ L DV++VYT +
Sbjct: 179 DYAAVRKAFDEAGLKAEVDGIVMKALNETELAGEDAIKMQKLLDALEGLDDVQEVYTT-V 237
Query: 240 IFD 242
IFD
Sbjct: 238 IFD 240
>gi|319944358|ref|ZP_08018632.1| YebC like protein [Lautropia mirabilis ATCC 51599]
gi|319742319|gb|EFV94732.1| YebC like protein [Lautropia mirabilis ATCC 51599]
Length = 242
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 169/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRG + TR+++E+ VA G +P N +LRLA+EKA D N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGALFTRLIKEITVAAKMAGGDPAMNPRLRLAMEKAADGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + RAIQ+ + E +NY E+RYEGY V GAA+I+DC+T+NR RTV+++R+
Sbjct: 61 MPKDTVQRAIQRGVGGL--EGVNYEEIRYEGYGVAGAAVIIDCLTDNRTRTVADVRHALT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV F F HCGQL+F P T ++ L+++ LE GA+D L + D + +IT P
Sbjct: 119 KHGGNLGTDGSVAFQFTHCGQLVFAPGTDEDKLMEVGLEAGAQDILSNDDGSLEVITEPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI +K +LE G KAE + I M+P + +A+K+QK+L+ L+ + DV++VYTNA+
Sbjct: 179 DFIAVKTALEAAGLKAEVAEITMKPQNELELTGDDAVKMQKILDALENVDDVQQVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|237745561|ref|ZP_04576041.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229376912|gb|EEO27003.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 242
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 173/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DAKRGKI TR+++E+ VA G ++N +LRLA +KA AN
Sbjct: 1 MSGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGGDINSNPRLRLAADKAAAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK N+ RAI + + + +NY EVRYEGY +NGAAIIVDC+T+NR+RTVS +R+ F+
Sbjct: 61 MPKENVQRAIARGTGTL--DGVNYEEVRYEGYGINGAAIIVDCLTDNRVRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKHCGQL F P T ++ L+++ALE GAED + D++ +I +P+
Sbjct: 119 KFGGNMGTEGSVSFQFKHCGQLFFAPGTDEDALMEVALEAGAEDIVSDEEGGFEVICAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFK E + IVMRP + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAQVKEALEKAGFKPEMAEIVMRPDSETEFTGPDAEKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|339325014|ref|YP_004684707.1| hypothetical protein CNE_1c08640 [Cupriavidus necator N-1]
gi|338165171|gb|AEI76226.1| protein UPF 0082 [Cupriavidus necator N-1]
Length = 241
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 176/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D+N +LRL+I+KA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAAKLGGGDVDSNPRLRLSIDKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E NY E+RYEGY + GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGM--EGANYEEIRYEGYGLAGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ L+ P T ++ L++ ALE GA+D + + D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLYAPGTPEDKLMEAALEAGADDVVTNDDGSIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSAVKAALEAAGFKAEVADVVMKPQNEVSFSGDDALKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|145588803|ref|YP_001155400.1| hypothetical protein Pnuc_0618 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|189040566|sp|A4SWH2.1|Y618_POLSQ RecName: Full=Probable transcriptional regulatory protein Pnuc_0618
gi|145047209|gb|ABP33836.1| protein of unknown function DUF28 [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 239
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 172/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI T++++E+ VA G T N +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTKLIKEITVAAKMGGGDLTANPRLRLAIDKAKDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +N+ RAIQ+ ++ E +NY E+RYEGY +NGAAIIVDC+T+NR RTV+ +R+ FN
Sbjct: 61 MPNDNVQRAIQRGTGSL--EGVNYEEIRYEGYGMNGAAIIVDCLTDNRTRTVAEVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ EGSV F+FKHCGQ+LF P T ++ L+++AL+ GAED + D + ++T
Sbjct: 119 KNGGNMGTEGSVAFLFKHCGQMLFAPGTSEDQLMEVALDAGAEDVITHDDGSLEVLTPVP 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++++++ G KAE + + MRP T I + +A +QKLL+ L+ L DV++V+TNA
Sbjct: 179 DFSKVQDAISQAGLKAELATVAMRPETEIALEGDQAESMQKLLDALENLDDVQEVFTNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|113866941|ref|YP_725430.1| hypothetical protein H16_A0916 [Ralstonia eutropha H16]
gi|123329469|sp|Q0KD59.1|Y916_CUPNH RecName: Full=Probable transcriptional regulatory protein H16_A0916
gi|113525717|emb|CAJ92062.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 241
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 175/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D+N +LRL+I+KA+DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAAKLGGGDVDSNPRLRLSIDKAMDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E NY E+RYEGY + GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGM--EGANYEEIRYEGYGLAGAAIIVDCLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV FMF HCGQ L+ P T ++ L++ ALE GA+D + + D I + P+
Sbjct: 119 KHGGNMGTEGSVAFMFTHCGQFLYAPGTPEDKLMEAALEAGADDVVTNDDGSIEVTCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE GFKAE + +VM+P + F +A K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSAVKAALEAAGFKAEVADVVMKPQNEVSFAGDDAAKMQKLLDALENLDDVQEVFTNAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|83746481|ref|ZP_00943532.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|207743792|ref|YP_002260184.1| hypothetical protein RSIPO_01975 [Ralstonia solanacearum IPO1609]
gi|386332912|ref|YP_006029081.1| hypothetical protein RSPO_c01244 [Ralstonia solanacearum Po82]
gi|421897042|ref|ZP_16327423.1| hypothetical protein RSMK_05699 [Ralstonia solanacearum MolK2]
gi|83726812|gb|EAP73939.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|206588207|emb|CAQ18773.1| hypothetical protein RSMK_05699 [Ralstonia solanacearum MolK2]
gi|206595192|emb|CAQ62119.1| hypothetical protein RSIPO_01975 [Ralstonia solanacearum IPO1609]
gi|334195360|gb|AEG68545.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
Length = 241
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 176/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D+N +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV FMF H GQ +F P T ++ L+D ALE GAED + + D + ++ P+
Sbjct: 119 KHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDRLMDAALEAGAEDIVTNDDGSVEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + +VM+P T + F +A ++QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALESAGFKAELAEVVMKPQTEVEFTGDDAARMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|170691718|ref|ZP_02882882.1| protein of unknown function DUF28 [Burkholderia graminis C4D1M]
gi|170143002|gb|EDT11166.1| protein of unknown function DUF28 [Burkholderia graminis C4D1M]
Length = 242
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 175/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVEKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + NY E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVNRAIQRGVGGV--DGANYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + ++D I ++ P+
Sbjct: 119 KNGGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMEAALEAGADDVVTNEDGSIEVVCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFPKVKTALEAAGFKAEVAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|332284808|ref|YP_004416719.1| hypothetical protein PT7_1555 [Pusillimonas sp. T7-7]
gi|330428761|gb|AEC20095.1| hypothetical protein PT7_1555 [Pusillimonas sp. T7-7]
Length = 247
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 166/243 (68%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +PDTN +LR+A +KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGPDPDTNPRLRMAWDKATAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + NY E+RYEGY V GAA+IVDC+T+NRMRTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGAG--AADGANYEEIRYEGYGVGGAAVIVDCMTDNRMRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +EGSV FMF HCGQ LF P T + +++ ALE GAED D++ I +IT+P
Sbjct: 119 KHGGNLGQEGSVAFMFNHCGQFLFAPGTSEEAVMEAALEAGAEDIHTDEEGMIEVITAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K + E G E +VM+ +AIK+QK+L+ L+ L DV++VY+ A
Sbjct: 179 DYAAVKTAFEQAGLMPEVQDVVMKALNEAELTGDDAIKMQKMLDMLESLDDVQEVYSTA- 237
Query: 240 IFD 242
FD
Sbjct: 238 TFD 240
>gi|421891318|ref|ZP_16322127.1| conserved hypothetical protein [Ralstonia solanacearum K60-1]
gi|378963361|emb|CCF98875.1| conserved hypothetical protein [Ralstonia solanacearum K60-1]
Length = 241
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 176/241 (73%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D+N +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV FMF H GQ +F P T ++ L+D ALE GAED + + D + ++ P+
Sbjct: 119 KHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGAEDVVTNDDGSVEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + ++M+P T + F +A ++QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALESAGFKAELAEVIMKPQTEVEFTGDDAARMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|17546909|ref|NP_520311.1| hypothetical protein RSc2190 [Ralstonia solanacearum GMI1000]
gi|33517068|sp|Q8XXC5.1|Y2190_RALSO RecName: Full=Probable transcriptional regulatory protein RSc2190
gi|17429209|emb|CAD15897.1| hypothetical protein RSc2190 [Ralstonia solanacearum GMI1000]
Length = 241
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G D+N +LRLAI+K DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKGTDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV FMF H GQ +F P T ++ L+D ALE GAED + + D I ++ P+
Sbjct: 119 KHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGAEDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + ++M+P T + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|300690892|ref|YP_003751887.1| hypothetical protein RPSI07_1233 [Ralstonia solanacearum PSI07]
gi|299077952|emb|CBJ50592.1| conserved protein of unknown function [Ralstonia solanacearum
PSI07]
gi|344167267|emb|CCA79472.1| conserved hypothetical protein [blood disease bacterium R229]
Length = 241
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 175/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D N +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDANPRLRLAIDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV F+F H GQ +F P T ++ L+D ALE GAED + + D I ++ P+
Sbjct: 119 KHGGNMGTQGSVAFLFDHVGQFIFAPGTPEDKLMDAALEAGAEDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + ++M+P T + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALESAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|307730383|ref|YP_003907607.1| hypothetical protein [Burkholderia sp. CCGE1003]
gi|323525392|ref|YP_004227545.1| hypothetical protein BC1001_1040 [Burkholderia sp. CCGE1001]
gi|407712764|ref|YP_006833329.1| hypothetical protein BUPH_06696 [Burkholderia phenoliruptrix
BR3459a]
gi|307584918|gb|ADN58316.1| protein of unknown function DUF28 [Burkholderia sp. CCGE1003]
gi|323382394|gb|ADX54485.1| protein of unknown function DUF28 [Burkholderia sp. CCGE1001]
gi|407234948|gb|AFT85147.1| hypothetical protein BUPH_06696 [Burkholderia phenoliruptrix
BR3459a]
Length = 242
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 175/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVEKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + NY E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVNRAIQRGVGGV--DGANYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + ++D I ++ P+
Sbjct: 119 KNGGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMEAALEAGADDVVTNEDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFPKVKAALEAAGFKAEVAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|225024075|ref|ZP_03713267.1| hypothetical protein EIKCOROL_00943 [Eikenella corrodens ATCC
23834]
gi|224943100|gb|EEG24309.1| hypothetical protein EIKCOROL_00943 [Eikenella corrodens ATCC
23834]
Length = 242
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 172/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK VDA+RGKI T++++E+ VA G +P +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHKKARVDAQRGKIFTKLIKEITVAARLGGGDPASNPRLRLAMDKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +G V F FKH G LLF P+T+++ L++ ALE GAED + D +IT+P+
Sbjct: 119 KHGGNLGTDGCVAFNFKHQGYLLFGPDTEEDALMEAALEAGAEDVVAHDDGSFEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ IK +LE GFKAE + MR V +A K+Q+L++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGIKAALETAGFKAEDGDVTMRAQNEAVLTGEDAAKMQRLIDALEALDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|299066210|emb|CBJ37394.1| conserved protein of unknown function [Ralstonia solanacearum
CMR15]
Length = 241
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G D+N +LRLAI+K DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDIDSNPRLRLAIDKGTDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV FMF H GQ +F P T ++ L+D ALE GA+D + + D I ++ P+
Sbjct: 119 KHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGADDVVTNDDGSIEVVCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + ++M+P T + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|114330308|ref|YP_746530.1| hypothetical protein Neut_0281 [Nitrosomonas eutropha C91]
gi|122314646|sp|Q0AJA6.1|Y281_NITEC RecName: Full=Probable transcriptional regulatory protein Neut_0281
gi|114307322|gb|ABI58565.1| protein of unknown function DUF28 [Nitrosomonas eutropha C91]
Length = 241
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 172/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G +P +N +LRLA++KA N
Sbjct: 1 MAGHSKWANIKHKKAAQDAKRGKIFTRLIKEITVAARLGGGDPGSNPRLRLAMDKAFGHN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ + E +NY E+RYEGY V+GAA++VDC+T+NR RTV+++R+ F
Sbjct: 61 MPKDNVERAIKRGCGEL--EGVNYEEIRYEGYGVSGAAVMVDCMTDNRTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F HCGQLLF P+ + LL++AL GAED + + D + +ITSP
Sbjct: 119 KHGGNLGTDGSVSYLFTHCGQLLFAPDIDEARLLEVALNAGAEDVIDNDDGSLEVITSPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ +++ LE FKAE + + +P I+ + +A K+QKLL+ L+ + DV+ VYT A+
Sbjct: 179 TFVAVRDELEKAAFKAELAEVTWKPENEILLQGDDAAKMQKLLDALEDIDDVQDVYTTAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|424776324|ref|ZP_18203306.1| hypothetical protein C660_05707 [Alcaligenes sp. HPC1271]
gi|422888422|gb|EKU30810.1| hypothetical protein C660_05707 [Alcaligenes sp. HPC1271]
Length = 243
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 171/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +P++N +LR+A +KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREVTVAARTGGPDPESNPRLRMAWDKATAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ ++ NY E+RYEGY +NGAA+IVDC+T+NR RTVS++R+ F
Sbjct: 61 MPKDNILRAIQRGAGGA--DDANYEEIRYEGYGINGAAVIVDCMTDNRQRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV+F F+HCGQ LF P T ++T++++ LE GA+D + D++ I ++ +P+
Sbjct: 119 KNGGNLGLDGSVVFQFRHCGQFLFAPGTSEDTIMEIGLEAGADDIVTDEEGLIEVLCAPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G E G+VM+ +A+K+QKLL+ L+ L DV++VYT A+
Sbjct: 179 DYPAVQAAFQAAGLTPEVEGVVMKALNETELSGDDAVKMQKLLDALEGLDDVQEVYTTAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|187929467|ref|YP_001899954.1| hypothetical protein Rpic_2388 [Ralstonia pickettii 12J]
gi|241663580|ref|YP_002981940.1| hypothetical protein Rpic12D_1988 [Ralstonia pickettii 12D]
gi|309781758|ref|ZP_07676491.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
gi|404396582|ref|ZP_10988376.1| YebC/PmpR family DNA-binding regulatory protein [Ralstonia sp.
5_2_56FAA]
gi|226701275|sp|B2U8Z2.1|Y2388_RALPJ RecName: Full=Probable transcriptional regulatory protein Rpic_2388
gi|187726357|gb|ACD27522.1| protein of unknown function DUF28 [Ralstonia pickettii 12J]
gi|240865607|gb|ACS63268.1| protein of unknown function DUF28 [Ralstonia pickettii 12D]
gi|308919399|gb|EFP65063.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
gi|348613672|gb|EGY63251.1| YebC/PmpR family DNA-binding regulatory protein [Ralstonia sp.
5_2_56FAA]
Length = 241
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDADSNPRLRLAMDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E NY E+RYEGY +NGAA+IVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNINRAIQRGVGGL--EGANYEEIRYEGYGINGAAVIVDCLTDNRTRTVAEVRHGFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ GSV F+F H GQ +F P T ++ L+D ALE GA+D + D + +I P
Sbjct: 119 KYGGNMGTSGSVAFLFDHIGQFIFAPGTPEDKLMDAALEAGADDVITHDDGSLEVICPPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + ++M+P T +VF +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFAKVKTALEAAGFKAELAEVIMKPQTEVVFTGEDAVKMQKLLDVLENLDDVQEVFTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|393759440|ref|ZP_10348255.1| hypothetical protein QWA_09984 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162329|gb|EJC62388.1| hypothetical protein QWA_09984 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 243
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 170/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+I+RE+ VA G +P++N +LR+A +KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKLWTKIIREVTVAARTGGPDPESNPRLRMAWDKATAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ ++ NY E+RYEGY +NGAA+IVDC+T+NR RTVS++R+ F
Sbjct: 61 MPKDNILRAIQRGAGGA--DDANYEEIRYEGYGINGAAVIVDCMTDNRQRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV+F F+HCGQ LF P T ++T++++ LE GA+D + D++ I ++ +PS
Sbjct: 119 KNGGNLGLDGSVVFQFRHCGQFLFAPGTSEDTIMEIGLEAGADDIVTDEEGLIEVLCAPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ + + G E G+VM+ +A K+QKLL+ L+ L DV++VYT A+
Sbjct: 179 DYPAVQAAFQAAGLTPEVEGVVMKALNETELSGEDAAKMQKLLDALEGLDDVQEVYTTAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|385203266|ref|ZP_10030136.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia sp.
Ch1-1]
gi|385183157|gb|EIF32431.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia sp.
Ch1-1]
Length = 242
Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 175/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVEKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +Y E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVNRAIQRGVGGV--DGASYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + + D I ++ P+
Sbjct: 119 KNGGNMGTDGSVAFMFDHVGQFLFAPGTPEDKLMEAALEAGADDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFPKVKSALEAAGFKAELAEVTMKPQTEVEFTGEDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|344171915|emb|CCA84541.1| conserved hypothetical protein [Ralstonia syzygii R24]
Length = 241
Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 175/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G + D N +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDANPRLRLAIDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAA+IVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAVIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV F+F H GQ +F P T ++ L+D ALE GA+D + + D I ++ P+
Sbjct: 119 KHGGNMGTQGSVAFLFDHVGQFIFAPGTPEDKLMDAALEAGADDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + ++M+P T + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALESAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|187923298|ref|YP_001894940.1| hypothetical protein Bphyt_1301 [Burkholderia phytofirmans PsJN]
gi|226695912|sp|B2T2A5.1|Y1301_BURPP RecName: Full=Probable transcriptional regulatory protein
Bphyt_1301
gi|187714492|gb|ACD15716.1| protein of unknown function DUF28 [Burkholderia phytofirmans PsJN]
Length = 242
Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 175/243 (72%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVEKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +Y E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVNRAIQRGVGGV--DGASYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + + D I ++ P+
Sbjct: 119 KNGGNMGTDGSVSFMFDHVGQFLFAPGTAEDKLMEAALEAGADDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFPKVKSALEAAGFKAELAEVTMKPQTEVEFTGEDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|91782569|ref|YP_557775.1| hypothetical protein Bxe_A3259 [Burkholderia xenovorans LB400]
gi|118573920|sp|Q142L6.1|Y1185_BURXL RecName: Full=Probable transcriptional regulatory protein
Bxeno_A1185
gi|91686523|gb|ABE29723.1| Protein of unknown function DUF28 [Burkholderia xenovorans LB400]
Length = 242
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVEKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +Y E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVNRAIQRGVGGV--DGASYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GAED + + D I ++ P+
Sbjct: 119 KNGGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMEAALEAGAEDVVTNDDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFPKVKSALEAAGFKAELAEVTMKPQTEVEFTGEDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|348589915|ref|YP_004874377.1| hypothetical protein TASI_0579 [Taylorella asinigenitalis MCE3]
gi|347973819|gb|AEP36354.1| hypothetical protein TASI_0579 [Taylorella asinigenitalis MCE3]
gi|399117154|emb|CCG19968.1| conserved hypothetical protein [Taylorella asinigenitalis 14/45]
Length = 243
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 169/243 (69%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+I+RE++VA G +PD N LRLA +KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIWTKIIREIQVAARAGGPDPDANPSLRLAWDKATAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ EN Y ++RYEGY GAA+IV+C+T+NR RTVS++R+ F
Sbjct: 61 MPKDNIMRAIQRGAGGADGEN--YEKIRYEGYGPAGAAVIVECMTDNRTRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL ++GSV FMFKHCGQ LF P + ++ ++D+ LE GA+D + D++ I + PS
Sbjct: 119 KHGGNLGQDGSVAFMFKHCGQFLFAPGSDESQIMDIGLEAGADDVITDEEGLIEVTCEPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++ +K + G E I+M+P V + +A+K+QK+L++L+ L DV++V+T A
Sbjct: 179 DYMAVKKAFLDAGLTPEVDAIIMKPLNETVLEGDDAVKMQKILDQLESLDDVQEVHTTA- 237
Query: 240 IFD 242
+FD
Sbjct: 238 VFD 240
>gi|319779288|ref|YP_004130201.1| hypothetical protein TEQUI_1134 [Taylorella equigenitalis MCE9]
gi|397661527|ref|YP_006502227.1| hypothetical protein KUI_0534 [Taylorella equigenitalis ATCC 35865]
gi|317109312|gb|ADU92058.1| hypothetical protein TEQUI_1134 [Taylorella equigenitalis MCE9]
gi|394349706|gb|AFN35620.1| hypothetical protein KUI_0534 [Taylorella equigenitalis ATCC 35865]
gi|399114546|emb|CCG17340.1| conserved hypothetical protein [Taylorella equigenitalis 14/56]
Length = 243
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 168/243 (69%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+I+RE++VA G +PD N LRLA +KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIWTKIIREIQVAARAGGADPDANPSLRLAWDKATAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ EN Y ++RYEGY GAA+IV+C+T+NR RTVS++R+
Sbjct: 61 MPKDNIMRAIQRGAGGADGEN--YEKIRYEGYGPAGAAVIVECMTDNRTRTVSDVRHALT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL ++GSV FMFKHCGQ LF P + ++ ++++ LE GA+D + D + I + PS
Sbjct: 119 KHGGNLGQDGSVAFMFKHCGQFLFAPGSDESQIMEIGLEAGADDVVTDDEGLIEVTCEPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++ +K + G E GI+M+P V + +AIK+QK+L++L+ L DV++V+T A
Sbjct: 179 DYMSVKKAFTDAGLTPEVDGIIMKPLNETVLEGDDAIKMQKILDQLESLDDVQEVHTTA- 237
Query: 240 IFD 242
IFD
Sbjct: 238 IFD 240
>gi|325266856|ref|ZP_08133527.1| YebC like protein [Kingella denitrificans ATCC 33394]
gi|324981597|gb|EGC17238.1| YebC like protein [Kingella denitrificans ATCC 33394]
Length = 242
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI T++++E+ +A G +P+ N +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTKLIKEITIAAKQGGGDPNANPRLRLAMEKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G LL+ N ++ L++ ALE GAED + D++ I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLLYT-NADEDALMEAALEAGAEDVIADEEGVIEVITAPT 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE GFKAE + MRP T EA K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWANVKTALEQAGFKAEDGDVTMRPQTTTELSGAEAEKMQKLIDALEDLDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|312796932|ref|YP_004029854.1| hypothetical protein RBRH_02488 [Burkholderia rhizoxinica HKI 454]
gi|312168707|emb|CBW75710.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 256
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 174/243 (71%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E+ VA G + +N +LRLAI+KA DAN
Sbjct: 15 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEITVAARLGGGDAGSNPRLRLAIDKATDAN 74
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + E NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 75 MPKDNVNRAIQRGVGGV--EGANYEEIRYEGYGIGGAAIIVDTMTDNRTRTVAEVRHAFS 132
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV F+F H GQ LF P T ++ L++ ALE GA+D + D I ++ +P+
Sbjct: 133 KHGGNLGTDGSVAFLFDHVGQFLFAPGTPEDKLMEAALEAGADDVTTNDDGSIEVLCAPN 192
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 193 DFAQVKAALEAAGFKAELAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAV 252
Query: 240 IFD 242
I D
Sbjct: 253 IAD 255
>gi|456062822|ref|YP_007501792.1| hypothetical protein D521_0488 [beta proteobacterium CB]
gi|455440119|gb|AGG33057.1| hypothetical protein D521_0488 [beta proteobacterium CB]
Length = 239
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 169/239 (70%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI T++++E+ VA G TN +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTKLIKEITVAAKLGGGDIATNPRLRLAIDKAKDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +N+ RAIQ+ ++ E +NY E+RYEGY +NGAAIIVDC+T+NR RTV+ +R+ F
Sbjct: 61 MPNDNVQRAIQRGTGSL--EGVNYEEIRYEGYGLNGAAIIVDCLTDNRTRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ EGSV FMFKHCGQ++F P T ++ L+++AL+ GAED + +D + ++T
Sbjct: 119 KNGGNMGAEGSVAFMFKHCGQMIFAPGTNEDQLMEIALDAGAEDVITHEDGSLEVLTPVP 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +++ L G KAE + + MRP T F+ +A +QKLL+ L+ L DV++V+TNA
Sbjct: 179 DFPRVQDVLIQAGLKAEIATVTMRPETETEFEGEQAESMQKLLDALENLDDVQEVFTNA 237
>gi|329906921|ref|ZP_08274524.1| hypothetical protein IMCC9480_3061 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547137|gb|EGF32006.1| hypothetical protein IMCC9480_3061 [Oxalobacteraceae bacterium
IMCC9480]
Length = 241
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 172/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E+ V G TN +LRLA+EKA DAN
Sbjct: 1 MAGHSKWANIKHKKAATDAKRGKVWTRLIKEITVGSRLGGGDIATNPRLRLAVEKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + + NY EVRYEGY ++GAAIIV+C+T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVQRAIARGTGGL--DGANYEEVRYEGYGIHGAAIIVECMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F+F+HCGQ LF P T ++ L++ ALE GAED L D + + ++ +
Sbjct: 119 KFGGNMGAEGSVAFLFQHCGQFLFAPGTSEDKLMEAALEAGAEDVLTDDEGGLEVLCAVH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE GFKAE + +VM+ T VF +AI++QKLL+ L+ L DV++VY+NA+
Sbjct: 179 DYSAVKQALEAAGFKAEVADVVMKSETETVFSGDDAIRMQKLLDALEDLDDVQQVYSNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|300703524|ref|YP_003745126.1| hypothetical protein RCFBP_11206 [Ralstonia solanacearum CFBP2957]
gi|299071187|emb|CBJ42503.1| conserved protein of unknown function [Ralstonia solanacearum
CFBP2957]
Length = 241
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ V G + D+N +LRLAI+KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVGARLGGGDVDSNPRLRLAIDKATDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + E +Y E+RYEGY ++GAAIIVDC+T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNIQRAIQRGVGGL--EGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV FMF H GQ +F P T ++ L+D ALE GAED + + D + ++ P+
Sbjct: 119 KHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGAEDVVTNDDGSVEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE G KAE + ++M+P T + F +A ++QKLL+ L+ L DV++VYTNA+
Sbjct: 179 DFAKVKAALESAGLKAELAEVIMKPQTEVEFTGDDAARMQKLLDALENLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|350572171|ref|ZP_08940477.1| YebC like protein [Neisseria wadsworthii 9715]
gi|349790565|gb|EGZ44472.1| YebC like protein [Neisseria wadsworthii 9715]
Length = 242
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 173/241 (71%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARLGGGDPASNPRLRLAMDKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E +Y+E+RYEGY + GAA++VDC+T+N+ RTV+++R+ FN
Sbjct: 61 MPKDNVQRAIDKGTGNV--EGADYVELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F+H G L+F N ++ L++ ALE GAED ++D + I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFQFEHQGYLVF-TNADEDALMEAALEAGAEDVIVDDEGVIEVITAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++K +LE GFK+E + MR + V +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAQVKTTLEEAGFKSEDGDVTMRAQNDTVLTGEDAEKMQKLIDALEDLDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|295675993|ref|YP_003604517.1| hypothetical protein BC1002_0911 [Burkholderia sp. CCGE1002]
gi|295435836|gb|ADG15006.1| protein of unknown function DUF28 [Burkholderia sp. CCGE1002]
Length = 242
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 173/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARLGGGEIDSNPRLRLAVDKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + NY E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNINRAIQRGVGGA--DGANYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + ++D I ++ P+
Sbjct: 119 KNGGNMGTDGSVSFMFDHVGQFLFAPGTAEDALMEAALEAGADDVVTNEDGSIEVLCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFSKVKTALETAGFKAELAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAS 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|349574447|ref|ZP_08886397.1| YebC like protein [Neisseria shayeganii 871]
gi|348013993|gb|EGY52887.1| YebC like protein [Neisseria shayeganii 871]
Length = 242
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 174/241 (72%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK VDAKRGKI TR+++E+ VA G +P +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHKKARVDAKRGKIFTRLIKEITVAARLGGGDPTSNPRLRLAMDKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E ++YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ FN
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVDYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +G V F F H G L++ + ++ L++ ALE GAED ++D+D I ++T+P+
Sbjct: 119 KYGGNLGTDGCVAFNFAHQGYLVY-ADADEDALMEAALEAGAEDVIVDEDGIIEVVTAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++K +LE GF+++ + MR V EA+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAQVKAALEAAGFESQDGDVTMRAQNETVLSGEEAVKMQKLIDALEDLDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|302879791|ref|YP_003848355.1| hypothetical protein Galf_2594 [Gallionella capsiferriformans ES-2]
gi|302582580|gb|ADL56591.1| protein of unknown function DUF28 [Gallionella capsiferriformans
ES-2]
Length = 241
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 178/243 (73%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI TR+++E+ VA G ++P N +LRLA++KA N
Sbjct: 1 MAGHSKWANIQHRKGKQDAKRGKIFTRLIKEITVAARMGGSDPTGNPRLRLAMDKAYANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ + + E + Y+E+RYEGY +NGAA++VDC+T+N+MR V+++R+ F
Sbjct: 61 MPKDNVERAIKRGSGEL--EGVQYMEIRYEGYGINGAAVMVDCMTDNKMRAVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV FMF HCGQL+F P T +N L+++AL+ GAED + D I +IT+ +
Sbjct: 119 KYGGNLGTDGSVAFMFAHCGQLIFAPGTDENGLMEVALDAGAEDISTNDDGSIEVITAAN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI +K +LE G+KAE ++M+P ++F +A+K+QKLL+ L+ L DV++VYT A+
Sbjct: 179 DFINVKQALETAGYKAEFGEVIMKPANEVIFTGDDAVKMQKLLDALEDLDDVQEVYTTAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|332528320|ref|ZP_08404320.1| hypothetical protein HGR_00425 [Hylemonella gracilis ATCC 19624]
gi|332042191|gb|EGI78517.1| hypothetical protein HGR_00425 [Hylemonella gracilis ATCC 19624]
Length = 239
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/239 (50%), Positives = 165/239 (69%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G +P N +LRLAI+KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDPSANPRLRLAIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + I K N E +NY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRVKYNIDKATGN--QEGVNYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV F FKHCGQL+F P T ++ ++++ALE GAED + D+D I ++T+P+
Sbjct: 119 KHGGNMGTEGSVAFQFKHCGQLIFAPGTSEDKVMEVALEAGAEDVIADEDGAIEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +KN+LE G K E +G+ MR I +A K+QKLL+ ++ L DV+ VY NA
Sbjct: 179 DFEAVKNALEAAGLKPEVAGVTMRAENTIELSGDDAEKMQKLLDVIEDLDDVQDVYHNA 237
>gi|209517571|ref|ZP_03266410.1| protein of unknown function DUF28 [Burkholderia sp. H160]
gi|209501984|gb|EEA02001.1| protein of unknown function DUF28 [Burkholderia sp. H160]
Length = 242
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 171/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARLGGGEIDSNPRLRLAVDKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + NY E+RYEGY + GAA+IVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNINRAIQRGVGGA--DGANYEEIRYEGYGIGGAAVIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D ++D I ++ P
Sbjct: 119 KNGGNMGTDGSVSFMFDHVGQFLFAPGTAEDALMEAALEAGADDVQTNEDGSIEVLCPPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFSKVKAALEAAGFKAELAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAS 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|253997453|ref|YP_003049517.1| hypothetical protein Mmol_2088 [Methylotenera mobilis JLW8]
gi|253984132|gb|ACT48990.1| protein of unknown function DUF28 [Methylotenera mobilis JLW8]
Length = 241
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 170/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+I++E+ V+ G +P+ N +LR A+ A + N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTKIIKEITVSARLGGGDPNMNPRLRAAVALAKEEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + E ++Y E+RYEGY +NGAAII+DC+T+N+ R V ++R+ +
Sbjct: 61 MPSDNITRAIKKGTGEL--EGVSYEEIRYEGYGINGAAIIIDCLTDNKQRAVMDVRHALS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV FMFKHCG L++ P T ++ ++++ALE GAED + + D I +IT P+
Sbjct: 119 KHGGNLGTDGSVAFMFKHCGSLVYEPGTSEDKVMEVALEAGAEDVVTNDDGSIEVITPPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI +K +LE G KA + M+P +VF +AIK+QK+L+ L+ L DV+ VYT+A+
Sbjct: 179 DFIAVKEALEAAGLKAVMGEVTMKPDAEVVFTGDDAIKMQKILDALEDLDDVQDVYTSAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|332524158|ref|ZP_08400387.1| hypothetical protein RBXJA2T_00235 [Rubrivivax benzoatilyticus JA2]
gi|332107496|gb|EGJ08720.1| hypothetical protein RBXJA2T_00235 [Rubrivivax benzoatilyticus JA2]
Length = 241
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TR++RE+ VA G +P+ N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRVIREIIVAARQGGGDPNANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + R I K N+ E +NY E+RYEGY + GAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPADTVKRNIDKATGNL--EGVNYEEIRYEGYGIGGAAIIVDCMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL EGSV F FKHCGQL+F P T ++ +++ ALE GAED + +D I ++TSP+
Sbjct: 119 KYGGNLGTEGSVAFQFKHCGQLIFAPGTSEDAVMEAALEAGAEDVVTGEDGSIEVLTSPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G AE + + MR I +A ++QKLL+ ++ L DV+ V+ NA
Sbjct: 179 DFQAVKAALEAKGLTAEVAEVTMRAENTIALAGEDAARMQKLLDVIEDLDDVQDVFHNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|319762839|ref|YP_004126776.1| hypothetical protein Alide_2149 [Alicycliphilus denitrificans BC]
gi|330824918|ref|YP_004388221.1| hypothetical protein Alide2_2338 [Alicycliphilus denitrificans
K601]
gi|317117400|gb|ADU99888.1| protein of unknown function DUF28 [Alicycliphilus denitrificans BC]
gi|329310290|gb|AEB84705.1| UPF0082 protein yeeN [Alicycliphilus denitrificans K601]
Length = 239
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 165/239 (69%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G +P N +LRLAI+KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARQGGGDPAANPRLRLAIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K + + E INY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKASGTL--EGINYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKH GQL+F P T ++ ++++ALE GAED + D D I ++T+P
Sbjct: 119 KYGGNMGTEGSVAFQFKHAGQLIFAPGTSEDKVMEVALEAGAEDVVTDDDGAIEVLTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +KN+LE G KAE + + MRP + + +A ++QKLL+ ++ L DV++VY NA
Sbjct: 179 DFEAVKNALEARGLKAEVAEVTMRPENTVALEGDDAARMQKLLDVIEDLDDVQEVYHNA 237
>gi|347539022|ref|YP_004846447.1| hypothetical protein NH8B_1207 [Pseudogulbenkiania sp. NH8B]
gi|345642200|dbj|BAK76033.1| protein of unknown function [Pseudogulbenkiania sp. NH8B]
Length = 241
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 171/243 (70%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G DTN +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKERADAKRGKIFTRLIKEITVAARLGGGDMDTNPRLRLAVDKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + E ++Y+E+RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDNVQRAIDRGAGTL--EGVDYVEIRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCG L+F P ++ L++ ALE GAED + + D I +IT+P
Sbjct: 119 KYGGNMGTDGCVAFQFKHCGYLVFAPGVDEDALMEAALEAGAEDVVTNDDGSIEVITAPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F EIK +LE GFKAE + MR +A ++QKLL+ L+ L DV++VYT+A+
Sbjct: 179 EFTEIKGALEAAGFKAEMGEVTMRALNETELTGEDAERMQKLLDALEDLDDVQEVYTSAV 238
Query: 240 IFD 242
+ D
Sbjct: 239 MDD 241
>gi|56477509|ref|YP_159098.1| hypothetical protein ebA3674 [Aromatoleum aromaticum EbN1]
gi|67462021|sp|Q5P3B7.1|Y2072_AROAE RecName: Full=Probable transcriptional regulatory protein
AZOSEA20720
gi|56313552|emb|CAI08197.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 241
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 170/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G +P+ N +LRLA++KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKVFTKLIKEITVAARMGGGDPNFNPRLRLAVDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + + ++Y E RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPSENIDRAIKRGTGEL--DGVSYEEARYEGYGIGGAAVMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGN+ +G V F FKHCGQL+F P T ++ L++ ALE GAED + + D I +IT+P
Sbjct: 119 KNGGNMGTDGCVAFQFKHCGQLMFAPGTSEDALMEAALEAGAEDVVTNDDGSIEVITAPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++ +K++LE F+AE + M+P G+A ++QKLL+ L+ L DV++VYT+A+
Sbjct: 179 EYSNVKDALEKASFRAEFGEVTMKPQNETELSGGDAERMQKLLDALESLDDVQEVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|345876117|ref|ZP_08827894.1| hypothetical protein l11_19820 [Neisseria weaveri LMG 5135]
gi|417956833|ref|ZP_12599772.1| hypothetical protein l13_01780 [Neisseria weaveri ATCC 51223]
gi|343967338|gb|EGV35585.1| hypothetical protein l11_19820 [Neisseria weaveri LMG 5135]
gi|343969962|gb|EGV38164.1| hypothetical protein l13_01780 [Neisseria weaveri ATCC 51223]
Length = 242
Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 168/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P +N +LRLA++KA D N
Sbjct: 1 MAGHSKWANIRHKKERQDAKRGKIFTRLIKEITVAAKMGGGDPASNPRLRLAMDKAFDNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ FN
Sbjct: 61 MPKDNIQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G LLF P ++ L++ ALE GAED + + D + +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLLFAPGVDEDALMEAALEAGAEDVVTNDDGSLEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ IK++LE GFK+E + MR +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGIKSALEEAGFKSEDGDVTMRAQNETELSGEDAEKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|383759706|ref|YP_005438692.1| hypothetical protein RGE_38540 [Rubrivivax gelatinosus IL144]
gi|381380376|dbj|BAL97193.1| hypothetical protein RGE_38540 [Rubrivivax gelatinosus IL144]
Length = 241
Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TR++RE+ VA G +P+ N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKVWTRVIREIIVAARQGGGDPNANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + R I K N+ E +NY E+RYEGY + GAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPADTVKRNIDKATGNL--EGVNYEEIRYEGYGIGGAAIIVDCMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL EGSV F FKHCGQL+F P T ++ +++ ALE GAED + +D I ++TSP+
Sbjct: 119 KYGGNLGTEGSVAFQFKHCGQLIFAPGTNEDAVMEAALEAGAEDVVTGEDGSIEVLTSPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G AE + + MR I +A ++QKLL+ ++ L DV+ V+ NA
Sbjct: 179 DFQAVKGALEAKGLTAEIAEVTMRAENTIALAGEDAARMQKLLDVIEDLDDVQDVFHNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|377820281|ref|YP_004976652.1| hypothetical protein BYI23_A008370 [Burkholderia sp. YI23]
gi|413963124|ref|ZP_11402351.1| hypothetical protein BURK_024480 [Burkholderia sp. SJ98]
gi|357935116|gb|AET88675.1| hypothetical protein BYI23_A008370 [Burkholderia sp. YI23]
gi|413928956|gb|EKS68244.1| hypothetical protein BURK_024480 [Burkholderia sp. SJ98]
Length = 242
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 174/241 (72%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAK+GK+ TR+++E++VA G D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKKGKVWTRLIKEIQVAARMGGGEIDSNPRLRLAVDKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNINRAIQRGTGGV--DGANYEEIRYEGYGIGGAAIIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L+D ALE GA+D + ++D I ++ P+
Sbjct: 119 KFGGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMDAALEAGADDVVTNEDGSIEVVCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFQKVKDALEAAGFKAELAEVTMKPQTEVEFSGDDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|404379669|ref|ZP_10984723.1| UPF0082 protein [Simonsiella muelleri ATCC 29453]
gi|294483117|gb|EFG30804.1| UPF0082 protein [Simonsiella muelleri ATCC 29453]
Length = 245
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 173/241 (71%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
+AGHSKWANI+ KK VDA+RGKI T++++E+ VA G +P +N +LRLA++KA DAN
Sbjct: 5 LAGHSKWANIQHKKARVDAQRGKIFTKLIKEITVAAREGGGDPASNPRLRLAMDKAWDAN 64
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E ++YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 65 MPKDNVQRAIDKGTGNL--EGVDYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFT 122
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F + ++ L++ ALE GAED ++D + I +IT+PS
Sbjct: 123 KNGGNLGTDGCVAFNFVHQGYLVF-TDADEDKLMEAALEAGAEDVIVDDEGIIEVITTPS 181
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE GF +++ + MR V +A+K+QKLL+ L+ L DV+ VYT+A+
Sbjct: 182 DWASVKSALETAGFTSQAGDVTMRAQNETVLTGDDAVKMQKLLDALESLDDVQDVYTSAV 241
Query: 240 I 240
+
Sbjct: 242 L 242
>gi|186476818|ref|YP_001858288.1| hypothetical protein Bphy_2064 [Burkholderia phymatum STM815]
gi|226701147|sp|B2JE34.1|Y2064_BURP8 RecName: Full=Probable transcriptional regulatory protein Bphy_2064
gi|184193277|gb|ACC71242.1| protein of unknown function DUF28 [Burkholderia phymatum STM815]
Length = 242
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 174/243 (71%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAK+GK+ TR+++E++VA G D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKKGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVDKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNINRAIQRGVGGV--DGANYEEIRYEGYGIGGAAIIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L+D ALE GA+D + ++D I +I P+
Sbjct: 119 KFGGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMDAALEAGADDVVTNEDGSIEVICPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K +LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFSKVKAALETAGFKAELAEVTMKPQTEVEFAGDDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|350544987|ref|ZP_08914506.1| FIG000859: hypothetical protein [Candidatus Burkholderia kirkii
UZHbot1]
gi|350527248|emb|CCD38636.1| FIG000859: hypothetical protein [Candidatus Burkholderia kirkii
UZHbot1]
Length = 242
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 172/241 (71%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAK+GK+ TR+++E++VA G D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKKGKVWTRLIKEIQVAARMGGGEIDSNPRLRLAVDKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAIQ+ + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNINRAIQRGTGGV--DGANYEEIRYEGYGIGGAAIIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ F P T ++TL+D ALE G +D + + D I +I P+
Sbjct: 119 KFGGNMGTDGSVSFMFDHVGQFFFAPGTPEDTLMDAALEAGTDDVVTNDDGSIEVICPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFQKVKDALEAAGFKAELTEVTMKPQTEVEFSGDDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|394989423|ref|ZP_10382256.1| hypothetical protein SCD_01842 [Sulfuricella denitrificans skB26]
gi|393790923|dbj|GAB71895.1| hypothetical protein SCD_01842 [Sulfuricella denitrificans skB26]
Length = 242
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 167/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G N +LRLA++KA + N
Sbjct: 1 MAGHSKWANIKHKKAATDAKRGKIFTRLIKEITVAAKMGGGDISCNPRLRLAVDKAYENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ ++ E +NY E+RYEGY G A++V+C+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVERAIKRGTGDL--EGVNYEELRYEGYGPAGVAVMVECLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV F+FKHCGQ+LF P T ++ L++ ALE GAED + ++D I ++T P
Sbjct: 119 KHGGNLGTDGSVAFLFKHCGQMLFAPGTDEDKLMEAALEAGAEDVVTNEDGSIEVVTDPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F IK +L G + E + M+P +A+K+QKLL+ L+ L DV++VYT A+
Sbjct: 179 EFAAIKEALVKAGLQPEVGEVTMKPANENELTGDDAVKMQKLLDALESLDDVQEVYTTAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|238023201|ref|ZP_04603627.1| hypothetical protein GCWU000324_03128 [Kingella oralis ATCC 51147]
gi|237865584|gb|EEP66724.1| hypothetical protein GCWU000324_03128 [Kingella oralis ATCC 51147]
Length = 241
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK VDA+RGKI T++++E+ VA G +P +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHKKARVDAQRGKIFTKLIKEITVAAKQGGGDPASNPRLRLAMDKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E ++Y+E+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVDYVELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F N ++ L++ ALE GAED ++D + I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVF-ANVDEDALMEAALEAGAEDVIVDDEGIIEVITAPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ IK +LE GFKAE + MR +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAAIKAALEQAGFKAEDGDVTMRAQNTTELSGADAEKMQKLIDALESLDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|224826619|ref|ZP_03699720.1| protein of unknown function DUF28 [Pseudogulbenkiania ferrooxidans
2002]
gi|224601220|gb|EEG07402.1| protein of unknown function DUF28 [Pseudogulbenkiania ferrooxidans
2002]
Length = 241
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 170/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E+ VA G DTN +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHKKERADAKRGKIFTRLIKEITVAARLGGGDIDTNPRLRLAVDKAWGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + E ++Y+E+RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDNVQRAIDRGAGTL--EGVDYVEIRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCG L+F P ++ L++ ALE GAED + + D I +IT+P
Sbjct: 119 KYGGNMGTDGCVAFQFKHCGYLVFAPGVDEDALMEAALEAGAEDVVTNDDGSIEVITAPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F EIK +LE GFKAE + MR +A ++QKLL+ L+ L DV++VYT+A+
Sbjct: 179 EFTEIKGALEAAGFKAEMGEVTMRALNETELTGEDAERMQKLLDALEDLDDVQEVYTSAV 238
Query: 240 IFD 242
+ D
Sbjct: 239 MDD 241
>gi|294669541|ref|ZP_06734608.1| hypothetical protein NEIELOOT_01440 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308454|gb|EFE49697.1| hypothetical protein NEIELOOT_01440 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 241
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 168/241 (69%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DA+RGKI TR+++E+ VA G +P N +LRLA++KA +N
Sbjct: 1 MAGHSKWANIQHKKARADAQRGKIFTRLIKEITVAARLGGGDPGANPRLRLAMDKAAASN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ FN
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F ++ L++ ALE GAED + D++ I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVF-TGVDEDALMEAALEAGAEDVIADEEGIIEVITAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ E+K LE GFK+E + MR V +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAEVKAKLEAAGFKSEDGDVTMRAQNETVLSGDDAVKMQKLIDALEALDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|381400228|ref|ZP_09925205.1| hypothetical protein KKB_00262 [Kingella kingae PYKK081]
gi|380834710|gb|EIC14538.1| hypothetical protein KKB_00262 [Kingella kingae PYKK081]
Length = 241
Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 171/241 (70%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI T++++E+ +A G +P+ N +LRLA++KA D N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTKLIKEITIAAKQGGGDPNANPRLRLAMDKAWDNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E ++YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVDYIELRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +G V F F+H G L++ N +++L++ ALE GAED L+D D I +IT+P+
Sbjct: 119 KHGGNLGTDGCVAFNFEHQGYLVY-TNADEDSLMEAALEAGAEDVLVDDDGVIEVITAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +IK +LE GFKAE + MR +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAQIKITLEQAGFKAEDGDVTMRAQNTTELSGDDAEKMQKLIDALEDLDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|333375746|ref|ZP_08467547.1| YebC like protein [Kingella kingae ATCC 23330]
gi|332969719|gb|EGK08733.1| YebC like protein [Kingella kingae ATCC 23330]
Length = 241
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI T++++E+ +A G +P+ N +LRLA++KA D N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTKLIKEITIAAKQGGGDPNANPRLRLAMDKAWDNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E ++YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVDYIELRYEGYGIGGAAVMVDCMTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +G V F F+H G L++ N ++ L++ ALE GAED L D D I +IT+P+
Sbjct: 119 KHGGNLGTDGCVAFNFEHQGYLVY-TNADEDALMEAALEAGAEDVLTDDDGVIEVITAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +IK +LE GFKAE S + MR +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAQIKITLEQAGFKAEDSDVTMRAQNTTELSGDDAEKMQKLIDALEDLDDVQNVYTSAV 237
Query: 240 I 240
+
Sbjct: 238 L 238
>gi|433480264|ref|ZP_20437549.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63041]
gi|432214596|gb|ELK70494.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63041]
Length = 242
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/241 (47%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 IPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|15677497|ref|NP_274653.1| hypothetical protein NMB1648 [Neisseria meningitidis MC58]
gi|385850810|ref|YP_005897325.1| hypothetical protein NMBM04240196_0588 [Neisseria meningitidis
M04-240196]
gi|385852754|ref|YP_005899268.1| hypothetical protein NMBH4476_0579 [Neisseria meningitidis H44/76]
gi|416160215|ref|ZP_11606105.1| hypothetical protein NMXN1568_0540 [Neisseria meningitidis N1568]
gi|416195771|ref|ZP_11617847.1| hypothetical protein NMBCU385_0543 [Neisseria meningitidis CU385]
gi|418288807|ref|ZP_12901237.1| hypothetical protein NMY233_1516 [Neisseria meningitidis NM233]
gi|418291075|ref|ZP_12903137.1| hypothetical protein NMY220_1536 [Neisseria meningitidis NM220]
gi|421551307|ref|ZP_15997302.1| hypothetical protein NMEN69166_1732 [Neisseria meningitidis 69166]
gi|421559671|ref|ZP_16005541.1| hypothetical protein NMEN92045_1644 [Neisseria meningitidis 92045]
gi|421561674|ref|ZP_16007513.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM2657]
gi|421568130|ref|ZP_16013858.1| hypothetical protein NMEN3001_1708 [Neisseria meningitidis NM3001]
gi|427827158|ref|ZP_18994201.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|433465622|ref|ZP_20423096.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM422]
gi|433471982|ref|ZP_20429362.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 68094]
gi|433473041|ref|ZP_20430405.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97021]
gi|433478154|ref|ZP_20435469.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70012]
gi|433481590|ref|ZP_20438855.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2006087]
gi|433483575|ref|ZP_20440805.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2002038]
gi|433486787|ref|ZP_20443978.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97014]
gi|433488825|ref|ZP_20445979.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M13255]
gi|433491009|ref|ZP_20448126.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM418]
gi|433505491|ref|ZP_20462426.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9506]
gi|433507638|ref|ZP_20464541.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9757]
gi|433509804|ref|ZP_20466665.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 12888]
gi|433511838|ref|ZP_20468656.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 4119]
gi|433526643|ref|ZP_20483268.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 69096]
gi|433539446|ref|ZP_20495917.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70030]
gi|33517103|sp|Q9JYC7.1|Y1648_NEIMB RecName: Full=Probable transcriptional regulatory protein NMB1648
gi|7226899|gb|AAF41997.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984991|gb|EFV63945.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325128682|gb|EGC51548.1| hypothetical protein NMXN1568_0540 [Neisseria meningitidis N1568]
gi|325140707|gb|EGC63221.1| hypothetical protein NMBCU385_0543 [Neisseria meningitidis CU385]
gi|325199758|gb|ADY95213.1| hypothetical protein NMBH4476_0579 [Neisseria meningitidis H44/76]
gi|325205633|gb|ADZ01086.1| hypothetical protein NMBM04240196_0588 [Neisseria meningitidis
M04-240196]
gi|372200528|gb|EHP14593.1| hypothetical protein NMY220_1536 [Neisseria meningitidis NM220]
gi|372200982|gb|EHP14966.1| hypothetical protein NMY233_1516 [Neisseria meningitidis NM233]
gi|402328068|gb|EJU63449.1| hypothetical protein NMEN69166_1732 [Neisseria meningitidis 69166]
gi|402334788|gb|EJU70065.1| hypothetical protein NMEN92045_1644 [Neisseria meningitidis 92045]
gi|402336979|gb|EJU72234.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM2657]
gi|402342436|gb|EJU77601.1| hypothetical protein NMEN3001_1708 [Neisseria meningitidis NM3001]
gi|432201584|gb|ELK57663.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM422]
gi|432207023|gb|ELK63019.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 68094]
gi|432210642|gb|ELK66598.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97021]
gi|432214081|gb|ELK69989.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70012]
gi|432217421|gb|ELK73289.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2006087]
gi|432221005|gb|ELK76821.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97014]
gi|432221700|gb|ELK77505.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2002038]
gi|432222010|gb|ELK77811.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M13255]
gi|432226267|gb|ELK81999.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM418]
gi|432239807|gb|ELK95352.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9506]
gi|432240184|gb|ELK95725.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 9757]
gi|432245514|gb|ELL00983.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 12888]
gi|432246090|gb|ELL01549.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 4119]
gi|432259275|gb|ELL14547.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 69096]
gi|432272203|gb|ELL27316.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 70030]
Length = 242
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 167/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P +N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGSNPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|358635583|dbj|BAL22880.1| hypothetical protein AZKH_0534 [Azoarcus sp. KH32C]
Length = 241
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 169/241 (70%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G +P+ N +LRLA++KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKVFTKLIKEITVAARMGGGDPNFNPRLRLAVDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + + ++Y EVRYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPGENIDRAIKRGTGEL--DGVSYEEVRYEGYGIAGAAVMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCGQ+LF P T ++ L++ ALE GAED + + D I ++T+P
Sbjct: 119 KFGGNMGTDGCVAFQFKHCGQMLFAPGTNEDALMEAALEAGAEDVVTNDDGSIEVLTAPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K +LE GFKAE + M+P +++++QKLL+ L+ L DV+ VY++A+
Sbjct: 179 EFTTVKEALEKAGFKAEFGEVTMKPLNETELSGEDSVRMQKLLDALESLDDVQDVYSSAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|171058636|ref|YP_001790985.1| hypothetical protein Lcho_1953 [Leptothrix cholodnii SP-6]
gi|170776081|gb|ACB34220.1| protein of unknown function DUF28 [Leptothrix cholodnii SP-6]
Length = 241
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G + N +LRLAI+KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARQGGADTSMNPRLRLAIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I + K + N+ E NY E+RYEGY + GAA+I+D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNVDKASGNL--EGANYEEIRYEGYGIGGAAVIIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL EGSV F FKHCGQL+F P T ++ L+D+ALE GAED + D I ++T P+
Sbjct: 119 KYGGNLGTEGSVAFQFKHCGQLVFAPGTSEDKLMDVALEAGAEDVITGDDGSIEVLTGPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G KAE + + MR I +A ++QKLL+ ++ L DV+ VY NAL
Sbjct: 179 DFEAVKEALEAAGLKAEIADVTMRAENTIELSGDDAQRMQKLLDVIEDLDDVQAVYHNAL 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|390570371|ref|ZP_10250638.1| hypothetical protein WQE_18559 [Burkholderia terrae BS001]
gi|420254146|ref|ZP_14757165.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia sp.
BT03]
gi|389937703|gb|EIM99564.1| hypothetical protein WQE_18559 [Burkholderia terrae BS001]
gi|398049907|gb|EJL42300.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia sp.
BT03]
Length = 242
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 174/243 (71%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAK+GK+ TR+++E++VA G D+N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKKGKVWTRLIKEIQVAARMGGGDIDSNPRLRLAVDKAYDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAIQ+ + + +Y E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVNRAIQRGVGGV--DGASYEEIRYEGYGIGGAAIIVDTMTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + + D I ++ P+
Sbjct: 119 KFGGNMGTDGSVSFMFDHVGQFLFAPGTPEDKLMEAALEAGADDVVTNDDGSIEVVCPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P T + F +A+K+QKLL+ L+ L DV++VYTNA
Sbjct: 179 DFPKVKSALEAAGFKAEVAEVTMKPQTEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAA 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|241759107|ref|ZP_04757217.1| conserved hypothetical protein [Neisseria flavescens SK114]
gi|241320634|gb|EER56898.1| conserved hypothetical protein [Neisseria flavescens SK114]
Length = 242
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVITNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAAVKSALEAAGYKSVDGDVTMRAQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|121635288|ref|YP_975533.1| hypothetical protein NMC1563 [Neisseria meningitidis FAM18]
gi|218768670|ref|YP_002343182.1| hypothetical protein NMA1902 [Neisseria meningitidis Z2491]
gi|254805403|ref|YP_003083624.1| hypothetical protein NMO_1466 [Neisseria meningitidis alpha14]
gi|261400903|ref|ZP_05987028.1| protein YebC [Neisseria lactamica ATCC 23970]
gi|268599682|ref|ZP_06133849.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|304386882|ref|ZP_07369144.1| YebC like protein [Neisseria meningitidis ATCC 13091]
gi|385323742|ref|YP_005878181.1| hypothetical protein NMV_0736 [Neisseria meningitidis 8013]
gi|385328915|ref|YP_005883218.1| hypothetical protein NMBB_1882 [Neisseria meningitidis alpha710]
gi|385338487|ref|YP_005892360.1| hypothetical protein NMAA_1365 [Neisseria meningitidis WUE 2594]
gi|385340503|ref|YP_005894375.1| hypothetical protein NMBG2136_1518 [Neisseria meningitidis G2136]
gi|385341487|ref|YP_005895358.1| hypothetical protein NMBM01240149_0541 [Neisseria meningitidis
M01-240149]
gi|385857682|ref|YP_005904194.1| hypothetical protein NMBNZ0533_1621 [Neisseria meningitidis
NZ-05/33]
gi|416177048|ref|ZP_11609899.1| hypothetical protein NMBM6190_0481 [Neisseria meningitidis M6190]
gi|416182291|ref|ZP_11611961.1| hypothetical protein NMBM13399_0592 [Neisseria meningitidis M13399]
gi|416186876|ref|ZP_11613983.1| hypothetical protein NMBM0579_0595 [Neisseria meningitidis M0579]
gi|416191022|ref|ZP_11615995.1| hypothetical protein NMBES14902_0637 [Neisseria meningitidis
ES14902]
gi|416212424|ref|ZP_11621887.1| hypothetical protein NMBM01240013_0656 [Neisseria meningitidis
M01-240013]
gi|421538381|ref|ZP_15984557.1| hypothetical protein NMEN93003_1364 [Neisseria meningitidis 93003]
gi|421540895|ref|ZP_15987032.1| hypothetical protein NMEN93004_1769 [Neisseria meningitidis 93004]
gi|421542923|ref|ZP_15989025.1| hypothetical protein NMEN255_1567 [Neisseria meningitidis NM255]
gi|421544942|ref|ZP_15991010.1| hypothetical protein NMEN140_1507 [Neisseria meningitidis NM140]
gi|421547030|ref|ZP_15993070.1| hypothetical protein NMEN183_1542 [Neisseria meningitidis NM183]
gi|421549277|ref|ZP_15995295.1| hypothetical protein NMEN2781_1739 [Neisseria meningitidis NM2781]
gi|421553236|ref|ZP_15999202.1| hypothetical protein NMEN576_1570 [Neisseria meningitidis NM576]
gi|421557626|ref|ZP_16003527.1| hypothetical protein NMEN80179_1701 [Neisseria meningitidis 80179]
gi|421563819|ref|ZP_16009634.1| hypothetical protein NMEN2795_1654 [Neisseria meningitidis NM2795]
gi|433467728|ref|ZP_20425179.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 87255]
gi|433469769|ref|ZP_20427181.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 98080]
gi|433476094|ref|ZP_20433431.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 88050]
gi|433493031|ref|ZP_20450119.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM586]
gi|433495147|ref|ZP_20452211.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM762]
gi|433497320|ref|ZP_20454351.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M7089]
gi|433499413|ref|ZP_20456419.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M7124]
gi|433501350|ref|ZP_20458333.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM174]
gi|433503365|ref|ZP_20460324.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM126]
gi|433513994|ref|ZP_20470781.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63049]
gi|433516162|ref|ZP_20472927.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2004090]
gi|433518072|ref|ZP_20474814.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 96023]
gi|433520359|ref|ZP_20477074.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 65014]
gi|433522419|ref|ZP_20479104.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 61103]
gi|433524558|ref|ZP_20481216.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97020]
gi|433528743|ref|ZP_20485351.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM3652]
gi|433530952|ref|ZP_20487536.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM3642]
gi|433533220|ref|ZP_20489779.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2007056]
gi|433534939|ref|ZP_20491475.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2001212]
gi|433537130|ref|ZP_20493631.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 77221]
gi|433541532|ref|ZP_20497979.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63006]
gi|33517102|sp|Q9JTB0.1|Y1902_NEIMA RecName: Full=Probable transcriptional regulatory protein NMA1902
gi|166231411|sp|A1KV56.1|Y1563_NEIMF RecName: Full=Probable transcriptional regulatory protein NMC1563
gi|120866994|emb|CAM10757.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|121052678|emb|CAM09019.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|254668945|emb|CBA07203.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|261392129|emb|CAX49629.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|268583813|gb|EEZ48489.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|269209266|gb|EEZ75721.1| protein YebC [Neisseria lactamica ATCC 23970]
gi|304339041|gb|EFM05133.1| YebC like protein [Neisseria meningitidis ATCC 13091]
gi|308389767|gb|ADO32087.1| hypothetical protein NMBB_1882 [Neisseria meningitidis alpha710]
gi|319410901|emb|CBY91295.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325132768|gb|EGC55450.1| hypothetical protein NMBM6190_0481 [Neisseria meningitidis M6190]
gi|325134686|gb|EGC57325.1| hypothetical protein NMBM13399_0592 [Neisseria meningitidis M13399]
gi|325136702|gb|EGC59302.1| hypothetical protein NMBM0579_0595 [Neisseria meningitidis M0579]
gi|325138669|gb|EGC61224.1| hypothetical protein NMBES14902_0637 [Neisseria meningitidis
ES14902]
gi|325144886|gb|EGC67173.1| hypothetical protein NMBM01240013_0656 [Neisseria meningitidis
M01-240013]
gi|325198747|gb|ADY94203.1| hypothetical protein NMBG2136_1518 [Neisseria meningitidis G2136]
gi|325201693|gb|ADY97147.1| hypothetical protein NMBM01240149_0541 [Neisseria meningitidis
M01-240149]
gi|325208571|gb|ADZ04023.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
gi|389605264|emb|CCA44184.1| UPF0082 protein MCA1220 [Neisseria meningitidis alpha522]
gi|402316186|gb|EJU51736.1| hypothetical protein NMEN255_1567 [Neisseria meningitidis NM255]
gi|402316408|gb|EJU51953.1| hypothetical protein NMEN93003_1364 [Neisseria meningitidis 93003]
gi|402317552|gb|EJU53089.1| hypothetical protein NMEN93004_1769 [Neisseria meningitidis 93004]
gi|402322229|gb|EJU57694.1| hypothetical protein NMEN183_1542 [Neisseria meningitidis NM183]
gi|402322435|gb|EJU57896.1| hypothetical protein NMEN140_1507 [Neisseria meningitidis NM140]
gi|402324667|gb|EJU60099.1| hypothetical protein NMEN2781_1739 [Neisseria meningitidis NM2781]
gi|402328547|gb|EJU63915.1| hypothetical protein NMEN576_1570 [Neisseria meningitidis NM576]
gi|402334339|gb|EJU69629.1| hypothetical protein NMEN80179_1701 [Neisseria meningitidis 80179]
gi|402339899|gb|EJU75106.1| hypothetical protein NMEN2795_1654 [Neisseria meningitidis NM2795]
gi|432201839|gb|ELK57913.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 87255]
gi|432202021|gb|ELK58090.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 98080]
gi|432209203|gb|ELK65174.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 88050]
gi|432226964|gb|ELK82680.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM586]
gi|432228889|gb|ELK84583.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM762]
gi|432232496|gb|ELK88140.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M7089]
gi|432233256|gb|ELK88887.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis M7124]
gi|432234129|gb|ELK89751.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM174]
gi|432239607|gb|ELK95157.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM126]
gi|432246305|gb|ELL01758.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63049]
gi|432252080|gb|ELL07439.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2004090]
gi|432252590|gb|ELL07943.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 96023]
gi|432252940|gb|ELL08288.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 65014]
gi|432258270|gb|ELL13558.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 61103]
gi|432258785|gb|ELL14066.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 97020]
gi|432264422|gb|ELL19626.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM3652]
gi|432265452|gb|ELL20646.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2007056]
gi|432265762|gb|ELL20954.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis NM3642]
gi|432270689|gb|ELL25825.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 2001212]
gi|432272491|gb|ELL27599.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 77221]
gi|432276655|gb|ELL31711.1| DNA-binding regulatory , YebC/PmpR family protein [Neisseria
meningitidis 63006]
Length = 242
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|296315222|ref|ZP_06865163.1| protein YebC [Neisseria polysaccharea ATCC 43768]
gi|385855668|ref|YP_005902181.1| hypothetical protein NMBM01240355_1567 [Neisseria meningitidis
M01-240355]
gi|421555334|ref|ZP_16001268.1| hypothetical protein NMEN98008_1593 [Neisseria meningitidis 98008]
gi|422110969|ref|ZP_16380794.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|296837859|gb|EFH21797.1| protein YebC [Neisseria polysaccharea ATCC 43768]
gi|309378379|emb|CBX22980.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|325204609|gb|ADZ00063.1| hypothetical protein NMBM01240355_1567 [Neisseria meningitidis
M01-240355]
gi|402330848|gb|EJU66192.1| hypothetical protein NMEN98008_1593 [Neisseria meningitidis 98008]
Length = 242
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVANDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|59801645|ref|YP_208357.1| hypothetical protein NGO1291 [Neisseria gonorrhoeae FA 1090]
gi|240014539|ref|ZP_04721452.1| hypothetical protein NgonD_07819 [Neisseria gonorrhoeae DGI18]
gi|240121061|ref|ZP_04734023.1| hypothetical protein NgonPI_04689 [Neisseria gonorrhoeae PID24-1]
gi|254494085|ref|ZP_05107256.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268597527|ref|ZP_06131694.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268604057|ref|ZP_06138224.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682516|ref|ZP_06149378.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268686958|ref|ZP_06153820.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043418|ref|ZP_06569139.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293398720|ref|ZP_06642896.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
gi|67462013|sp|Q5F792.1|Y1291_NEIG1 RecName: Full=Probable transcriptional regulatory protein NGO1291
gi|59718540|gb|AAW89945.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|226513125|gb|EEH62470.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268551315|gb|EEZ46334.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268588188|gb|EEZ52864.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622800|gb|EEZ55200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268627242|gb|EEZ59642.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012654|gb|EFE04639.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291610860|gb|EFF39959.1| conserved hypothetical protein [Neisseria gonorrhoeae F62]
Length = 242
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDELMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|313667975|ref|YP_004048259.1| hypothetical protein NLA_6360 [Neisseria lactamica 020-06]
gi|313005437|emb|CBN86872.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 242
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVANDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRTQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|329120304|ref|ZP_08248972.1| YebC like protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327462645|gb|EGF08968.1| YebC like protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 282
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 169/241 (70%), Gaps = 4/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DA+RGKI TR+++E+ VA G +P++N +LRLA++KA DAN
Sbjct: 42 MAGHSKWANIQHKKARADAQRGKIFTRLIKEITVAARLGGGDPNSNPRLRLAMDKAWDAN 101
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 102 MPKDNVQRAIDKGTGNV--EGAEYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFS 159
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F + ++ L++ ALE GAED L D++ I +IT+P+
Sbjct: 160 KNGGNLGTDGCVAFNFVHQGYLVFT-DADEDALMEAALEAGAEDVLSDEEGIIEVITAPA 218
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K LE GFK++ + MR V +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 219 DWAGVKAKLEAAGFKSQDGDVTMRAQNETVLTGEDAAKMQKLIDALENLDDVQNVYTSAV 278
Query: 240 I 240
+
Sbjct: 279 L 279
>gi|240016985|ref|ZP_04723525.1| hypothetical protein NgonFA_07427 [Neisseria gonorrhoeae FA6140]
gi|268601724|ref|ZP_06135891.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268585855|gb|EEZ50531.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 242
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDELMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRTQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|261365817|ref|ZP_05978700.1| protein YebC [Neisseria mucosa ATCC 25996]
gi|288565625|gb|EFC87185.1| protein YebC [Neisseria mucosa ATCC 25996]
Length = 242
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVITNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKAALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|261379116|ref|ZP_05983689.1| protein YebC [Neisseria cinerea ATCC 14685]
gi|269144438|gb|EEZ70856.1| protein YebC [Neisseria cinerea ATCC 14685]
Length = 242
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVANDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAVVKSTLEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|298369963|ref|ZP_06981279.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281423|gb|EFI22912.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 242
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVITNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKAALETAGYKSVDGDVTMRAQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAI 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|225077141|ref|ZP_03720340.1| hypothetical protein NEIFLAOT_02196 [Neisseria flavescens
NRL30031/H210]
gi|224951489|gb|EEG32698.1| hypothetical protein NEIFLAOT_02196 [Neisseria flavescens
NRL30031/H210]
Length = 242
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I ++T+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVITNDDGSIEVVTAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRTQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|119896865|ref|YP_932078.1| hypothetical protein azo0574 [Azoarcus sp. BH72]
gi|166229070|sp|A1K2Y6.1|Y574_AZOSB RecName: Full=Probable transcriptional regulatory protein azo0574
gi|119669278|emb|CAL93191.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 241
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G +P+ N +LRLAI+KA +
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKVFTKLIKEVTVAAKMGGGDPNANPRLRLAIDKAKAES 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI AI++ + E + Y E RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDNIENAIKRGTGQL--EGVTYEEARYEGYGIAGAAVMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCGQL+F P T ++ L++ ALE GAED + + D I +IT P
Sbjct: 119 KYGGNMGTDGCVAFQFKHCGQLMFAPGTDEDALMEAALEAGAEDVVANDDGSIEVITGPW 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K +LE GF AE + M+ +A ++QKLL+ L+ L DV++VYT+A+
Sbjct: 179 EFTTVKETLEKAGFTAEFGEVTMKAQNETELSGDDAARMQKLLDALESLDDVQEVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|261379885|ref|ZP_05984458.1| protein YebC [Neisseria subflava NJ9703]
gi|319637842|ref|ZP_07992608.1| hypothetical protein HMPREF0604_00231 [Neisseria mucosa C102]
gi|284797584|gb|EFC52931.1| protein YebC [Neisseria subflava NJ9703]
gi|317400997|gb|EFV81652.1| hypothetical protein HMPREF0604_00231 [Neisseria mucosa C102]
Length = 242
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVITNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKAALEAAGYKSVDGDVTMRAQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|419798168|ref|ZP_14323594.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sicca
VK64]
gi|385695901|gb|EIG26437.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sicca
VK64]
Length = 242
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVIANDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKAALETAGYKSVDGDVTMRAQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|340361415|ref|ZP_08683843.1| YebC like protein [Neisseria macacae ATCC 33926]
gi|349608910|ref|ZP_08888326.1| hypothetical protein HMPREF1028_00301 [Neisseria sp. GT4A_CT1]
gi|339888644|gb|EGQ78084.1| YebC like protein [Neisseria macacae ATCC 33926]
gi|348615246|gb|EGY64774.1| hypothetical protein HMPREF1028_00301 [Neisseria sp. GT4A_CT1]
Length = 242
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVIANDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKAALEAAGYKSVDGDVTMRAQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|255065724|ref|ZP_05317579.1| protein YebC [Neisseria sicca ATCC 29256]
gi|255050042|gb|EET45506.1| protein YebC [Neisseria sicca ATCC 29256]
Length = 242
Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDVLMEAALEAGAEDVIANDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKAALEAAGYKSVDGDVTMRAQNETELSGEDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|421565971|ref|ZP_16011735.1| hypothetical protein NMEN3081_1774 [Neisseria meningitidis NM3081]
gi|402342364|gb|EJU77531.1| hypothetical protein NMEN3081_1774 [Neisseria meningitidis NM3081]
Length = 242
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR + +K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDTVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|134296478|ref|YP_001120213.1| hypothetical protein Bcep1808_2379 [Burkholderia vietnamiensis G4]
gi|387902839|ref|YP_006333178.1| hypothetical protein MYA_2087 [Burkholderia sp. KJ006]
gi|166228573|sp|A4JGH5.1|Y2379_BURVG RecName: Full=Probable transcriptional regulatory protein
Bcep1808_2379
gi|134139635|gb|ABO55378.1| protein of unknown function DUF28 [Burkholderia vietnamiensis G4]
gi|387577731|gb|AFJ86447.1| hypothetical protein MYA_2087 [Burkholderia sp. KJ006]
Length = 242
Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDASSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY +NGAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGINGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 AFSAVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|429745092|ref|ZP_19278535.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sp.
oral taxon 020 str. F0370]
gi|429161299|gb|EKY03716.1| DNA-binding regulatory protein, YebC/PmpR family [Neisseria sp.
oral taxon 020 str. F0370]
Length = 241
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 170/244 (69%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DA+RGKI TR+++E+ VA G +P +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIQHKKARADAQRGKIFTRLIKEITVAARLGGGDPASNPRLRLAMDKAWDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E ++YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ FN
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVDYIELRYEGYGIGGAALMVDCMTDNKTRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L++ + ++ L++ ALE GAED + +D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVY-TDADEDALMEAALEAGAEDVVAHEDGIIEVITAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ IK LE GF ++ + MR V +A K+QKL++ L+ L DV+ VYT+A+
Sbjct: 178 DWAGIKAKLEEAGFTSQDGDVTMRAQNETVLTGEDAAKMQKLIDALENLDDVQNVYTSAV 237
Query: 240 I-FD 242
+ FD
Sbjct: 238 LQFD 241
>gi|161524160|ref|YP_001579172.1| hypothetical protein Bmul_0984 [Burkholderia multivorans ATCC
17616]
gi|189351083|ref|YP_001946711.1| hypothetical protein BMULJ_02280 [Burkholderia multivorans ATCC
17616]
gi|221199607|ref|ZP_03572651.1| conserved hypothetical protein TIGR01033 [Burkholderia multivorans
CGD2M]
gi|221205493|ref|ZP_03578508.1| conserved hypothetical protein TIGR01033 [Burkholderia multivorans
CGD2]
gi|221211685|ref|ZP_03584664.1| conserved hypothetical protein TIGR01033 [Burkholderia multivorans
CGD1]
gi|421467476|ref|ZP_15916095.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
multivorans ATCC BAA-247]
gi|226701240|sp|A9AJK0.1|Y2280_BURM1 RecName: Full=Probable transcriptional regulatory protein
Bmul_0984/BMULJ_02280
gi|160341589|gb|ABX14675.1| protein of unknown function DUF28 [Burkholderia multivorans ATCC
17616]
gi|189335105|dbj|BAG44175.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|221169046|gb|EEE01514.1| conserved hypothetical protein TIGR01033 [Burkholderia multivorans
CGD1]
gi|221174331|gb|EEE06763.1| conserved hypothetical protein TIGR01033 [Burkholderia multivorans
CGD2]
gi|221180892|gb|EEE13295.1| conserved hypothetical protein TIGR01033 [Burkholderia multivorans
CGD2M]
gi|400233668|gb|EJO63193.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
multivorans ATCC BAA-247]
Length = 242
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 171/243 (70%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDVSSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D ++D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVSTNEDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|167835997|ref|ZP_02462880.1| hypothetical protein Bpse38_05862 [Burkholderia thailandensis
MSMB43]
gi|424902674|ref|ZP_18326190.1| hypothetical protein A33K_14039 [Burkholderia thailandensis MSMB43]
gi|390933049|gb|EIP90449.1| hypothetical protein A33K_14039 [Burkholderia thailandensis MSMB43]
Length = 242
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 170/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P I F EA+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEIEFTGEEAVKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
+ +
Sbjct: 239 VIE 241
>gi|160898960|ref|YP_001564542.1| hypothetical protein Daci_3521 [Delftia acidovorans SPH-1]
gi|333914917|ref|YP_004488649.1| hypothetical protein DelCs14_3298 [Delftia sp. Cs1-4]
gi|160364544|gb|ABX36157.1| protein of unknown function DUF28 [Delftia acidovorans SPH-1]
gi|333745117|gb|AEF90294.1| UPF0082 protein yeeN [Delftia sp. Cs1-4]
Length = 239
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 164/239 (68%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TRI+RE+ VA G N +LRLA+EKA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKVWTRIIREIMVAARTGGGDLSANPRLRLAVEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R I K N+ E + Y E+RYEGY + GAAIIVD +T+NR+RTV+++R+ F+
Sbjct: 61 MPADNIKRNIDKATGNL--EGVTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKH GQL+F P + ++ ++++ALE GAED + D + I ++T+P+
Sbjct: 119 KYGGNMGTEGSVSFQFKHVGQLIFAPGSDEDQIMEVALEAGAEDVITDDEGAIEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F ++++L+ G E + + MRP I + +A ++QKLL+ ++ L DV+ VY NA
Sbjct: 179 EFETVRDALQAKGLTPEVAEVTMRPENTIALQGDDAARMQKLLDMIEDLDDVQDVYHNA 237
>gi|194099052|ref|YP_002002133.1| hypothetical protein NGK_1508 [Neisseria gonorrhoeae NCCP11945]
gi|226734673|sp|B4RMZ8.1|Y1508_NEIG2 RecName: Full=Probable transcriptional regulatory protein NGK_1508
gi|193934342|gb|ACF30166.1| UPF0082 protein [Neisseria gonorrhoeae NCCP11945]
Length = 242
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YI +RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIGLRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDELMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|297539689|ref|YP_003675458.1| hypothetical protein M301_2521 [Methylotenera versatilis 301]
gi|297259036|gb|ADI30881.1| protein of unknown function DUF28 [Methylotenera versatilis 301]
Length = 241
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 172/243 (70%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+I++E+ VA G + + N +LR A+ +A + N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTKIIKEITVAARMSGGDVNMNPRLRAAVAEAKEEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + E +NY E+RYEGY +NGAAII+DC+T+N+ R V ++R+ +
Sbjct: 61 MPADNIIRAIKKGTGEL--EGVNYEEIRYEGYGINGAAIIIDCLTDNKQRAVMDVRHALS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV+FMFKHCG L++ P T ++ ++++ALE GAED + D+D I +IT P+
Sbjct: 119 KHGGNLGTDGSVVFMFKHCGSLIYEPGTDEDKVMEVALEAGAEDVVTDEDGSIEVITPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ IK ++E G KA + + M+P VF +A+K+QK+L+ L L DV+ VYT+A+
Sbjct: 179 DFMVIKEAMEAAGLKAVMAEVTMKPNMETVFTGDDAVKMQKILDALDDLDDVQDVYTSAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|167562120|ref|ZP_02355036.1| hypothetical protein BoklE_06107 [Burkholderia oklahomensis EO147]
gi|167569369|ref|ZP_02362243.1| hypothetical protein BoklC_05962 [Burkholderia oklahomensis C6786]
Length = 242
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 170/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G +P++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDPNSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVNTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P I F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEIEFTGEDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
+ +
Sbjct: 239 VVE 241
>gi|115352383|ref|YP_774222.1| hypothetical protein Bamb_2332 [Burkholderia ambifaria AMMD]
gi|122322607|sp|Q0BD85.1|Y2332_BURCM RecName: Full=Probable transcriptional regulatory protein Bamb_2332
gi|115282371|gb|ABI87888.1| protein of unknown function DUF28 [Burkholderia ambifaria AMMD]
Length = 242
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 170/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY ++GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGISGAAIIVDTLTDNRIRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 AFSAVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|268595178|ref|ZP_06129345.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268684680|ref|ZP_06151542.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|385336069|ref|YP_005890016.1| hypothetical protein NGTW08_1185 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|268548567|gb|EEZ43985.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268624964|gb|EEZ57364.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|317164612|gb|ADV08153.1| hypothetical protein NGTW08_1185 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 242
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YI +RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIGLRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D I +IT+P+
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDELMEAALEAGAEDVVTNDDGSIEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G+K+ + MR +A+K+QKL++ L+ L DV+ VYT+A+
Sbjct: 179 DWAGVKSALEAAGYKSVDGDVTMRTQNETELSGDDAVKMQKLIDALEDLDDVQDVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|421477957|ref|ZP_15925742.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
multivorans CF2]
gi|400225602|gb|EJO55749.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
multivorans CF2]
Length = 242
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 171/243 (70%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDVSSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D ++D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVNTNEDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|170699942|ref|ZP_02890970.1| protein of unknown function DUF28 [Burkholderia ambifaria IOP40-10]
gi|171319553|ref|ZP_02908652.1| protein of unknown function DUF28 [Burkholderia ambifaria MEX-5]
gi|172061253|ref|YP_001808905.1| hypothetical protein BamMC406_2210 [Burkholderia ambifaria MC40-6]
gi|226701219|sp|B1YU49.1|Y2210_BURA4 RecName: Full=Probable transcriptional regulatory protein
BamMC406_2210
gi|170135147|gb|EDT03447.1| protein of unknown function DUF28 [Burkholderia ambifaria IOP40-10]
gi|171095234|gb|EDT40227.1| protein of unknown function DUF28 [Burkholderia ambifaria MEX-5]
gi|171993770|gb|ACB64689.1| protein of unknown function DUF28 [Burkholderia ambifaria MC40-6]
Length = 242
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY ++GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGISGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 AFSAVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|402565910|ref|YP_006615255.1| hypothetical protein GEM_1116 [Burkholderia cepacia GG4]
gi|402247107|gb|AFQ47561.1| protein of unknown function DUF28 [Burkholderia cepacia GG4]
Length = 242
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY ++GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGISGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 VFSAVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|418530054|ref|ZP_13095980.1| hypothetical protein CTATCC11996_10188 [Comamonas testosteroni ATCC
11996]
gi|371452607|gb|EHN65633.1| hypothetical protein CTATCC11996_10188 [Comamonas testosteroni ATCC
11996]
Length = 239
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG+I TRI+RE+ VA G + N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGRIWTRIIREIMVAARQGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R I K N+ + + Y E+RYEGY + GAAIIVD +T+NR+RTV+++R+ F+
Sbjct: 61 MPADNIKRNIDKATGNL--DGVTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKH GQ++F P T + ++++ALE GA+D + D + I ++T+P
Sbjct: 119 KYGGNMGTEGSVAFQFKHVGQIMFAPGTDEEKVMEIALEAGADDVITDDEGGIEVLTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++++L+ GF A+ + + MRP I + +A ++QKLL+ ++ L DV+ VY NA
Sbjct: 179 DFEAVRDALQAAGFTADMAEVTMRPENTIALEGDDAARMQKLLDMIEDLDDVQDVYHNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|416947909|ref|ZP_11935141.1| hypothetical protein B1M_24350 [Burkholderia sp. TJI49]
gi|325523582|gb|EGD01877.1| hypothetical protein B1M_24350 [Burkholderia sp. TJI49]
Length = 242
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARLGGGDVNSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A+K+QKLL+ ++ L DV++VYTNA+
Sbjct: 179 AFSAVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAVKMQKLLDAIENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|237654505|ref|YP_002890819.1| hypothetical protein Tmz1t_3853 [Thauera sp. MZ1T]
gi|237625752|gb|ACR02442.1| protein of unknown function DUF28 [Thauera sp. MZ1T]
Length = 241
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG +++ +E+ VA G +P N +LRLA++KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGAAFSKLAKEITVAAKMGGGDPGFNPRLRLAVDKAKGVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI+K + E ++Y E+RYEGY + G+A++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDKIDNAIKKGTGEL--EGVSYEEIRYEGYGIGGSAVMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCGQLLF P T ++ L++ ALE GAED + + D I +IT P
Sbjct: 119 KYGGNMGTDGCVSFQFKHCGQLLFAPGTSEDALMEAALEAGAEDVVTNDDGSIEVITGPW 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F IK +LE GF AE + M+P I EA ++QKLL+ L+ L DV++VYT+A
Sbjct: 179 EFTTIKEALEKAGFTAEFGEVTMKPENVIELAGDEAARMQKLLDALEGLDDVQEVYTSA 237
>gi|167585917|ref|ZP_02378305.1| hypothetical protein BuboB_11305 [Burkholderia ubonensis Bu]
Length = 242
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDIGSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY ++GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGISGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAVKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
+ +
Sbjct: 239 VVE 241
>gi|120611861|ref|YP_971539.1| hypothetical protein Aave_3203 [Acidovorax citrulli AAC00-1]
gi|326316863|ref|YP_004234535.1| hypothetical protein Acav_2055 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|166229404|sp|A1TS27.1|Y3203_ACIAC RecName: Full=Probable transcriptional regulatory protein Aave_3203
gi|120590325|gb|ABM33765.1| protein of unknown function DUF28 [Acidovorax citrulli AAC00-1]
gi|323373699|gb|ADX45968.1| UPF0082 protein yeeN [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 239
Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G + N +LRLAI+KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K N E + Y E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKATGNA--EGLTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKH GQL+F P T ++ ++++ALE GAED + D+D I ++T+P
Sbjct: 119 KYGGNMGTEGSVAFQFKHVGQLIFAPGTSEDKVMEVALEAGAEDVVTDEDGAIEVLTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G +++ + MRP I +A ++QKLL+ ++ L DV++VY NA
Sbjct: 179 DFEAVKNALEAAGLTPDAADVTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|71909676|ref|YP_287263.1| hypothetical protein Daro_4067 [Dechloromonas aromatica RCB]
gi|119391993|sp|Q478D8.1|Y4067_DECAR RecName: Full=Probable transcriptional regulatory protein Daro_4067
gi|71849297|gb|AAZ48793.1| Protein of unknown function DUF28 [Dechloromonas aromatica RCB]
Length = 241
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 163/243 (67%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG ++I +E+ VA G + N +LR+A++KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGAAFSKIAKEITVASKMGGGDINFNPRLRVAVDKAKGVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI+K + E + YIE+RYEGY + GAAI+VDC+T+N++RTV+ +R+ F+
Sbjct: 61 MPKDKIDTAIKKGTGEL--EGVEYIEIRYEGYGIGGAAIMVDCLTDNKVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCGQ++F P T + L+D A+E GA+D + D I ++T P+
Sbjct: 119 KFGGNMGSDGCVAFQFKHCGQMIFAPGTDEGALMDAAIEAGADDVTTNDDGSIEVLTPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++ +K++LE GFK E + M+P VF E +K+QKLL+ L+ L DV+++YT A+
Sbjct: 179 DYMAVKDALEAAGFKPEFGEVTMKPEGENVFAGEEGVKMQKLLDALENLDDVQEIYTTAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IED 241
>gi|221066388|ref|ZP_03542493.1| protein of unknown function DUF28 [Comamonas testosteroni KF-1]
gi|264679034|ref|YP_003278941.1| hypothetical protein CtCNB1_2899 [Comamonas testosteroni CNB-2]
gi|299530002|ref|ZP_07043429.1| hypothetical protein CTS44_04474 [Comamonas testosteroni S44]
gi|220711411|gb|EED66779.1| protein of unknown function DUF28 [Comamonas testosteroni KF-1]
gi|262209547|gb|ACY33645.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
gi|298721982|gb|EFI62912.1| hypothetical protein CTS44_04474 [Comamonas testosteroni S44]
Length = 239
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 164/239 (68%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG+I TRI+RE+ VA G + N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGRIWTRIIREIMVAARQGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R I K N+ + + Y E+RYEGY + GAAIIVD +T+NR+RTV+++R+ F+
Sbjct: 61 MPADNIKRNIDKATGNL--DGVTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKH GQ++F P T + ++++ALE GA+D + D + I ++T+P
Sbjct: 119 KYGGNMGTEGSVAFQFKHVGQIMFAPGTDEEKVMEIALEAGADDVITDDEGGIEVLTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++++L+ GF A+ + + MRP I + +A ++QKLL+ ++ L DV+ VY NA
Sbjct: 179 DFEAVRDALQAAGFTADMAEVTMRPENTIALEGDDAARMQKLLDMIEDLDDVQDVYHNA 237
>gi|254251819|ref|ZP_04945137.1| hypothetical protein BDAG_01020 [Burkholderia dolosa AUO158]
gi|124894428|gb|EAY68308.1| hypothetical protein BDAG_01020 [Burkholderia dolosa AUO158]
Length = 242
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 167/243 (68%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G +N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDVSSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVSTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|83721410|ref|YP_441569.1| hypothetical protein BTH_I1015 [Burkholderia thailandensis E264]
gi|167580368|ref|ZP_02373242.1| hypothetical protein BthaT_19599 [Burkholderia thailandensis TXDOH]
gi|167618471|ref|ZP_02387102.1| hypothetical protein BthaB_19343 [Burkholderia thailandensis Bt4]
gi|257139743|ref|ZP_05588005.1| hypothetical protein BthaA_11156 [Burkholderia thailandensis E264]
gi|119391237|sp|Q2SZT0.1|Y1015_BURTA RecName: Full=Probable transcriptional regulatory protein BTH_I1015
gi|83655235|gb|ABC39298.1| conserved hypothetical protein TIGR01033 [Burkholderia
thailandensis E264]
Length = 242
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVNTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P I F +A+K+QKLL+ L+ L DV+ VYTNA+
Sbjct: 179 EFSKVKDALEAGGFKAELAEVTMKPQNEIEFTGEDAVKMQKLLDALENLDDVQDVYTNAV 238
Query: 240 IFD 242
+ +
Sbjct: 239 VIE 241
>gi|53718801|ref|YP_107787.1| hypothetical protein BPSL1165 [Burkholderia pseudomallei K96243]
gi|53725435|ref|YP_103480.1| hypothetical protein BMA1884 [Burkholderia mallei ATCC 23344]
gi|67640601|ref|ZP_00439401.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|76809433|ref|YP_332795.1| hypothetical protein BURPS1710b_1385 [Burkholderia pseudomallei
1710b]
gi|121599269|ref|YP_992415.1| hypothetical protein BMASAVP1_A1075 [Burkholderia mallei SAVP1]
gi|124385881|ref|YP_001026782.1| hypothetical protein BMA10229_A0792 [Burkholderia mallei NCTC
10229]
gi|126439136|ref|YP_001058280.1| hypothetical protein BURPS668_1231 [Burkholderia pseudomallei 668]
gi|126449840|ref|YP_001079933.1| hypothetical protein BMA10247_0358 [Burkholderia mallei NCTC 10247]
gi|126454071|ref|YP_001065519.1| hypothetical protein BURPS1106A_1240 [Burkholderia pseudomallei
1106a]
gi|134281314|ref|ZP_01768023.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
305]
gi|167000925|ref|ZP_02266726.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei
PRL-20]
gi|167718781|ref|ZP_02402017.1| hypothetical protein BpseD_07139 [Burkholderia pseudomallei DM98]
gi|167737792|ref|ZP_02410566.1| hypothetical protein Bpse14_06985 [Burkholderia pseudomallei 14]
gi|167814978|ref|ZP_02446658.1| hypothetical protein Bpse9_07529 [Burkholderia pseudomallei 91]
gi|167823392|ref|ZP_02454863.1| hypothetical protein Bpseu9_06915 [Burkholderia pseudomallei 9]
gi|167844942|ref|ZP_02470450.1| hypothetical protein BpseB_06595 [Burkholderia pseudomallei B7210]
gi|167893484|ref|ZP_02480886.1| hypothetical protein Bpse7_06972 [Burkholderia pseudomallei 7894]
gi|167901937|ref|ZP_02489142.1| hypothetical protein BpseN_06622 [Burkholderia pseudomallei NCTC
13177]
gi|167910169|ref|ZP_02497260.1| hypothetical protein Bpse112_06733 [Burkholderia pseudomallei 112]
gi|167918201|ref|ZP_02505292.1| hypothetical protein BpseBC_06580 [Burkholderia pseudomallei
BCC215]
gi|217420080|ref|ZP_03451586.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
pseudomallei 576]
gi|226195370|ref|ZP_03790959.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
Pakistan 9]
gi|237811527|ref|YP_002895978.1| hypothetical protein GBP346_A1257 [Burkholderia pseudomallei
MSHR346]
gi|242314554|ref|ZP_04813570.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1106b]
gi|254175386|ref|ZP_04882046.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei ATCC
10399]
gi|254181237|ref|ZP_04887834.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1655]
gi|254190600|ref|ZP_04897107.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
Pasteur 52237]
gi|254195074|ref|ZP_04901503.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
S13]
gi|254202162|ref|ZP_04908525.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei FMH]
gi|254298483|ref|ZP_04965935.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
406e]
gi|254359907|ref|ZP_04976177.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei
2002721280]
gi|386862441|ref|YP_006275390.1| hypothetical protein BP1026B_I2391 [Burkholderia pseudomallei
1026b]
gi|403517951|ref|YP_006652084.1| hypothetical protein BPC006_I1289 [Burkholderia pseudomallei
BPC006]
gi|418389975|ref|ZP_12967789.1| hypothetical protein BP354A_2232 [Burkholderia pseudomallei 354a]
gi|418538078|ref|ZP_13103706.1| hypothetical protein BP1026A_4849 [Burkholderia pseudomallei 1026a]
gi|418541577|ref|ZP_13107053.1| hypothetical protein BP1258A_1989 [Burkholderia pseudomallei 1258a]
gi|418547820|ref|ZP_13112957.1| hypothetical protein BP1258B_2082 [Burkholderia pseudomallei 1258b]
gi|418554000|ref|ZP_13118800.1| hypothetical protein BP354E_1866 [Burkholderia pseudomallei 354e]
gi|60390878|sp|Q62IJ0.1|Y1884_BURMA RecName: Full=Probable transcriptional regulatory protein BMA1884
gi|60390881|sp|Q63VS9.1|Y1165_BURPS RecName: Full=Probable transcriptional regulatory protein BPSL1165
gi|119391263|sp|Q3JUF8.1|Y1385_BURP1 RecName: Full=Probable transcriptional regulatory protein
BURPS1710b_1385
gi|166200315|sp|A3N7F9.1|Y1231_BURP6 RecName: Full=Probable transcriptional regulatory protein
BURPS668_1231
gi|166200318|sp|A3NT48.1|Y1240_BURP0 RecName: Full=Probable transcriptional regulatory protein
BURPS1106A_1240
gi|166200359|sp|A3MI47.1|Y2858_BURM7 RecName: Full=Probable transcriptional regulatory protein
BMA10247_0358
gi|166200362|sp|A1V2G2.1|Y2875_BURMS RecName: Full=Probable transcriptional regulatory protein
BMASAVP1_A1075
gi|166229374|sp|A2S4B3.1|Y3092_BURM9 RecName: Full=Probable transcriptional regulatory protein
BMA10229_A0792
gi|52209215|emb|CAH35160.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52428858|gb|AAU49451.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei ATCC
23344]
gi|76578886|gb|ABA48361.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1710b]
gi|121228079|gb|ABM50597.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei
SAVP1]
gi|124293901|gb|ABN03170.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei NCTC
10229]
gi|126218629|gb|ABN82135.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
pseudomallei 668]
gi|126227713|gb|ABN91253.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1106a]
gi|126242710|gb|ABO05803.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei NCTC
10247]
gi|134247620|gb|EBA47705.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
305]
gi|147746409|gb|EDK53486.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei FMH]
gi|148029147|gb|EDK87052.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei
2002721280]
gi|157808433|gb|EDO85603.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
406e]
gi|157938275|gb|EDO93945.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
Pasteur 52237]
gi|160696430|gb|EDP86400.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei ATCC
10399]
gi|169651822|gb|EDS84515.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
S13]
gi|184211775|gb|EDU08818.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1655]
gi|217397384|gb|EEC37400.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
pseudomallei 576]
gi|225932572|gb|EEH28570.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
Pakistan 9]
gi|237505177|gb|ACQ97495.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
gi|238521354|gb|EEP84806.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|242137793|gb|EES24195.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1106b]
gi|243063228|gb|EES45414.1| conserved hypothetical protein TIGR01033 [Burkholderia mallei
PRL-20]
gi|385348838|gb|EIF55434.1| hypothetical protein BP1026A_4849 [Burkholderia pseudomallei 1026a]
gi|385357543|gb|EIF63590.1| hypothetical protein BP1258A_1989 [Burkholderia pseudomallei 1258a]
gi|385359728|gb|EIF65681.1| hypothetical protein BP1258B_2082 [Burkholderia pseudomallei 1258b]
gi|385370947|gb|EIF76169.1| hypothetical protein BP354E_1866 [Burkholderia pseudomallei 354e]
gi|385375814|gb|EIF80553.1| hypothetical protein BP354A_2232 [Burkholderia pseudomallei 354a]
gi|385659569|gb|AFI66992.1| hypothetical protein BP1026B_I2391 [Burkholderia pseudomallei
1026b]
gi|403073594|gb|AFR15174.1| hypothetical protein BPC006_I1289 [Burkholderia pseudomallei
BPC006]
Length = 242
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 169/243 (69%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDVNSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVNTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEVDFTGEDAVKMQKLLDALENLDDVQEVYTNAV 238
Query: 240 IFD 242
+ +
Sbjct: 239 VVE 241
>gi|407939261|ref|YP_006854902.1| hypothetical protein C380_12815 [Acidovorax sp. KKS102]
gi|407897055|gb|AFU46264.1| hypothetical protein C380_12815 [Acidovorax sp. KKS102]
Length = 239
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K N E + Y E+RYEGY + GAAI++D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKATGNA--EGLTYEEIRYEGYGIGGAAIMIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV+F FKHCGQL+F P T ++ ++++ALE GAED + D+D + ++T+P+
Sbjct: 119 KHGGNMGTEGSVVFQFKHCGQLIFAPGTSEDKVMEVALEAGAEDVVTDEDGAVEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G AE +G+ MRP I +A K+QKLL+ L+ L D ++VY NA
Sbjct: 179 DFEAVKNALEAAGLTAEVAGVTMRPENTIELTGEDAAKMQKLLDVLEDLDDTQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|372487179|ref|YP_005026744.1| DNA-binding regulatory protein, YebC/PmpR family [Dechlorosoma
suillum PS]
gi|359353732|gb|AEV24903.1| DNA-binding regulatory protein, YebC/PmpR family [Dechlorosoma
suillum PS]
Length = 241
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 166/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G +P N +LRLA+EKA +
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKVFTKLIKEITVAAKMGGGDPAMNPRLRLAMEKAKGES 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI AI++ + E ++Y E+RYEGY + GAA++VDC+T+NR+RTV+++R+ FN
Sbjct: 61 MPKDNIDNAIKRGTGQL--EGVSYEEIRYEGYGIGGAAVMVDCLTDNRVRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EG V F FKHCGQ+LF P + ++D A+E GA+D + + D I ++T P+
Sbjct: 119 KYGGNMGTEGCVSFQFKHCGQMLFAPGADEAAIMDAAIEAGADDIITNDDGSIEVLTPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ +LE GFK E + + M+ +A ++QKL++ L+ L DV++VYT+A+
Sbjct: 179 DLLNVQEALEKAGFKPEMAEVTMKALNESELTGEDAQRMQKLIDALESLDDVQEVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 M 239
>gi|365091969|ref|ZP_09329220.1| hypothetical protein KYG_10715 [Acidovorax sp. NO-1]
gi|363415706|gb|EHL22832.1| hypothetical protein KYG_10715 [Acidovorax sp. NO-1]
Length = 239
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 167/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA + G + N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARSGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K N E + Y E+RYEGY + GAAI++D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKATGNA--EGLTYEEIRYEGYGIGGAAIMIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV+F FKHCGQL+F P T ++ ++++ALE GAED + D+D + ++T+P+
Sbjct: 119 KHGGNMGTEGSVVFQFKHCGQLIFAPGTSEDKVMEVALEAGAEDVVTDEDGAVEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G AE +G+ MRP I +A ++QKLL+ L+ L D ++VY NA
Sbjct: 179 DFEAVKNALEAAGLTAEVAGVTMRPENTIELTGDDAARMQKLLDVLEDLDDTQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|107023232|ref|YP_621559.1| hypothetical protein Bcen_1682 [Burkholderia cenocepacia AU 1054]
gi|116690315|ref|YP_835938.1| hypothetical protein Bcen2424_2294 [Burkholderia cenocepacia
HI2424]
gi|170733653|ref|YP_001765600.1| hypothetical protein Bcenmc03_2317 [Burkholderia cenocepacia MC0-3]
gi|206560747|ref|YP_002231512.1| hypothetical protein BCAL2388 [Burkholderia cenocepacia J2315]
gi|254247619|ref|ZP_04940940.1| hypothetical protein BCPG_02423 [Burkholderia cenocepacia PC184]
gi|421867986|ref|ZP_16299638.1| hypothetical protein I35_4396 [Burkholderia cenocepacia H111]
gi|444358951|ref|ZP_21160299.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
cenocepacia BC7]
gi|444368833|ref|ZP_21168644.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
cenocepacia K56-2Valvano]
gi|118574100|sp|Q1BUW9.1|Y1682_BURCA RecName: Full=Probable transcriptional regulatory protein Bcen_1682
gi|166227707|sp|A0K968.1|Y2294_BURCH RecName: Full=Probable transcriptional regulatory protein
Bcen2424_2294
gi|226701251|sp|B1JW41.1|Y2317_BURCC RecName: Full=Probable transcriptional regulatory protein
Bcenmc03_2317
gi|226701259|sp|B4E5R6.1|Y2348_BURCJ RecName: Full=Probable transcriptional regulatory protein
BceJ2315_23480
gi|105893421|gb|ABF76586.1| protein of unknown function DUF28 [Burkholderia cenocepacia AU
1054]
gi|116648404|gb|ABK09045.1| protein of unknown function DUF28 [Burkholderia cenocepacia HI2424]
gi|124872395|gb|EAY64111.1| hypothetical protein BCPG_02423 [Burkholderia cenocepacia PC184]
gi|169816895|gb|ACA91478.1| protein of unknown function DUF28 [Burkholderia cenocepacia MC0-3]
gi|198036789|emb|CAR52689.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
gi|358071917|emb|CCE50516.1| hypothetical protein I35_4396 [Burkholderia cenocepacia H111]
gi|443600089|gb|ELT68312.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
cenocepacia K56-2Valvano]
gi|443602986|gb|ELT71021.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderia
cenocepacia BC7]
Length = 242
Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 166/243 (68%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDVNSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY ++GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGISGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVNTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV+ VYTNA+
Sbjct: 179 AFSAVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQDVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|257095107|ref|YP_003168748.1| hypothetical protein CAP2UW1_3562 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047631|gb|ACV36819.1| protein of unknown function DUF28 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 241
Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 162/243 (66%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KR ++I +E+ V+ G N +LRLA++KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRSASFSKIAKEITVSAKMGGGDAAFNPRLRLAVDKAKGVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI+K + E ++Y+E+RYEGY + GAA+IVDC+T+N+ RTV+++R+ FN
Sbjct: 61 MPKDKIDNAIKKGTGEL--EGVDYVEIRYEGYGIGGAAVIVDCLTDNKTRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +G V F FKHCGQLLF P T + L+D A+E GA+D L + D + +IT+P+
Sbjct: 119 KYGGNLGTDGCVAFQFKHCGQLLFAPGTDEGALMDAAIEAGADDVLTNDDGSVEVITAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++ +K++L GF+ E G+ M+ EA+++QKL++ L+ L DV++VYT+ +
Sbjct: 179 DYMAVKDALTAAGFQVEFGGVTMKAENETQLGGDEALRMQKLIDALEGLDDVQEVYTSVV 238
Query: 240 IFD 242
+ D
Sbjct: 239 LDD 241
>gi|78067090|ref|YP_369859.1| hypothetical protein Bcep18194_A5621 [Burkholderia sp. 383]
gi|119369525|sp|Q39EA1.1|Y5621_BURS3 RecName: Full=Probable transcriptional regulatory protein
Bcep18194_A5621
gi|77967835|gb|ABB09215.1| protein of unknown function DUF28 [Burkholderia sp. 383]
Length = 242
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 166/243 (68%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR+++E++VA G ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKIWTRLIKEIQVAARLGGGDVNSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY ++GAAIIVD +T+NR RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGISGAAIIVDTLTDNRTRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA D + D I ++
Sbjct: 119 KFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGANDVNTNDDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE GFKAE + + M+P + F +A K+QKLL+ L+ L DV+ VYTNA+
Sbjct: 179 AFSAVKDALEAGGFKAELAEVTMKPQNEVEFTGDDAAKMQKLLDALENLDDVQDVYTNAV 238
Query: 240 IFD 242
I +
Sbjct: 239 IVE 241
>gi|334132319|ref|ZP_08506077.1| hypothetical protein METUNv1_03159 [Methyloversatilis universalis
FAM5]
gi|333442629|gb|EGK70598.1| hypothetical protein METUNv1_03159 [Methyloversatilis universalis
FAM5]
Length = 243
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG +++ +E+ VA G +P N +LR+AI+KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGAAFSKLAKEITVAAKMGGGDPGFNPRLRMAIDKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI+K + E ++Y EVRYEGY + GAA++VDC+T+NR RTV+++R+ F+
Sbjct: 61 MPKDKIDNAIKKGTGEL--EGVSYEEVRYEGYGIGGAAVMVDCLTDNRTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV FMFKHCGQ +F P T ++ L+D ALE GAED ++D I +++S +
Sbjct: 119 KYGGNLGTDGSVAFMFKHCGQFIFAPGTSEDALMDAALEAGAEDVQTNEDGSIEVLSSQA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ +K++LE GFKAE + + M+P +A+++QKLL+ L L DV++VYT A+
Sbjct: 179 DFVAVKDALEKAGFKAEFAEVTMKPLNESPLAGDDAVRMQKLLDVLDGLDDVQEVYTTAV 238
Query: 240 IFD 242
+ D
Sbjct: 239 MDD 241
>gi|351728669|ref|ZP_08946360.1| hypothetical protein AradN_02768 [Acidovorax radicis N35]
Length = 239
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 165/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA + G + N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARSGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K N E + Y E+RYEGY + GAAI++D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKATGNA--EGLTYEEIRYEGYGIGGAAIMIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV+F FKHCGQL+F P T ++ ++++ALE GAED + D D + ++T+P+
Sbjct: 119 KHGGNMGTEGSVVFQFKHCGQLIFAPGTSEDKVMEVALEAGAEDVVTDDDGAVEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G E +G+ MRP I +A ++Q+LL+ L+ L D ++VY NA
Sbjct: 179 DFEAVKNALEAAGLTPEVAGVTMRPENTIELTGDDAARMQRLLDVLEDLDDTQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|121594258|ref|YP_986154.1| hypothetical protein Ajs_1898 [Acidovorax sp. JS42]
gi|222110896|ref|YP_002553160.1| hypothetical protein Dtpsy_1703 [Acidovorax ebreus TPSY]
gi|166227483|sp|A1W753.1|Y1898_ACISJ RecName: Full=Probable transcriptional regulatory protein Ajs_1898
gi|120606338|gb|ABM42078.1| protein of unknown function DUF28 [Acidovorax sp. JS42]
gi|221730340|gb|ACM33160.1| protein of unknown function DUF28 [Acidovorax ebreus TPSY]
Length = 239
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G +P N +LRLAI+KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARTGGGDPSANPRLRLAIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K + + E ++Y E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKASGTL--EGVSYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FK+ GQ++F P T ++ ++++ALE GAED + D + I ++T+P
Sbjct: 119 KYGGNMGTEGSVAFQFKNVGQIIFAPGTSEDKVMEVALEAGAEDVITDDEGAIEVLTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++++L G + E + + MRP I + + ++QKLL+ ++ L DV++VY NA
Sbjct: 179 DFEAVRDALGAAGLQPEVAEVTMRPENTIALEGDDVARMQKLLDMIEDLDDVQEVYHNA 237
>gi|149926740|ref|ZP_01915000.1| hypothetical protein LMED105_08650 [Limnobacter sp. MED105]
gi|149824669|gb|EDM83885.1| hypothetical protein LMED105_08650 [Limnobacter sp. MED105]
Length = 241
Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 164/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ T+I+RE+ VA G + TN +LRLA+EKA AN
Sbjct: 1 MAGHSKWANIQHRKNRQDEKRGKVWTKIIREVSVAARVGGGDVATNPRLRLAMEKAAAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K + E +NY E+RYEGY V GAA+I+DC+T+N++RTV+ +R+
Sbjct: 61 MPKDNVQRAIAKATG--EAEGVNYEEIRYEGYGVGGAAVIIDCMTDNKVRTVAEVRHALT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV FMFKHCGQ +F P ++T++++ALE G +D + D I +
Sbjct: 119 KHGGNLGTDGSVSFMFKHCGQFIFAPGHSEDTIMEVALENGGDDVITSDDGVIEVTCPVP 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K + E + E++ + M+P + + +AI++QK+++ L+ L DV++VYTN +
Sbjct: 179 EFHTLKTAFEAANMQFENAELTMKPASETELEGDDAIRMQKIIDMLEDLDDVQQVYTNVI 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|254000108|ref|YP_003052171.1| hypothetical protein Msip34_2407 [Methylovorus glucosetrophus
SIP3-4]
gi|313202068|ref|YP_004040726.1| hypothetical protein MPQ_2345 [Methylovorus sp. MP688]
gi|253986787|gb|ACT51644.1| protein of unknown function DUF28 [Methylovorus glucosetrophus
SIP3-4]
gi|312441384|gb|ADQ85490.1| conserved hypothetical protein [Methylovorus sp. MP688]
Length = 241
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T++++E+ V+ G + + N +LR A+ +A + N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVSARLGGGDVNFNPRLRAAVAEAKEEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + E +NY E+RYEGY + GAAII+DC+T+N+ R V+++R+ +
Sbjct: 61 MPAENITRAIKRGTGEL--EGVNYEEIRYEGYGIGGAAIIIDCMTDNKQRAVADVRHALS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V FMFKHCG L+F P T + +++ ALE GAED + D D I +IT P+
Sbjct: 119 KNGGNLGTDGCVAFMFKHCGTLVFEPGTSEEQVMEAALEAGAEDVITDDDGSIEVITPPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G KA + + M+P VF +A K+QKLL+ L+ L DV+ VYT A+
Sbjct: 179 DFTAVKEALEAAGLKAVLAEVTMKPLNETVFTGDDAAKMQKLLDALEDLDDVQDVYTTAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|330817835|ref|YP_004361540.1| hypothetical protein bgla_1g29730 [Burkholderia gladioli BSR3]
gi|327370228|gb|AEA61584.1| hypothetical protein bgla_1g29730 [Burkholderia gladioli BSR3]
Length = 242
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 173/243 (71%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI + + NY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D ++D I ++
Sbjct: 119 KYGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVNTNEDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++VYTNAL
Sbjct: 179 EFSKVKDALEAAGFKAELAEVTMKPQNEVEFSGDDAVKMQKLLDVLEDLDDVQEVYTNAL 238
Query: 240 IFD 242
I D
Sbjct: 239 IVD 241
>gi|91776707|ref|YP_546463.1| hypothetical protein Mfla_2355 [Methylobacillus flagellatus KT]
gi|118574120|sp|Q1GYR5.1|Y2355_METFK RecName: Full=Probable transcriptional regulatory protein Mfla_2355
gi|91710694|gb|ABE50622.1| protein of unknown function DUF28 [Methylobacillus flagellatus KT]
Length = 241
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 167/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T++++E+ V+ G + + N +LR A+ +A + N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVSARMGGGDVNFNPRLRAAVAEAKEQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + E +NY E+RYEGY +NGAA+I+DC+T+N+ R V+++R++ +
Sbjct: 61 MPAENIIRAIKRGTGEL--EGVNYEEIRYEGYGINGAALIIDCLTDNKQRAVADVRHVLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +G V FMFKHCG L+F P T ++ +++ ALE GAED + D+D I +IT+P
Sbjct: 119 KHGGNLGTDGCVAFMFKHCGVLVFEPGTSEDQVMEAALEAGAEDVITDEDGSIEVITAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G K + + M+P VF + +K+QKLL+ L+ L DV++VYT A+
Sbjct: 179 DFTAVKEALEAAGLKPVLAEVTMKPDNETVFSGEDGVKMQKLLDALEDLDDVQEVYTTAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|238028183|ref|YP_002912414.1| hypothetical protein [Burkholderia glumae BGR1]
gi|237877377|gb|ACR29710.1| Hypothetical protein bglu_1g26350 [Burkholderia glumae BGR1]
Length = 242
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 173/243 (71%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR+++E++VA G + ++N +LRLA++KA DAN
Sbjct: 1 MAGHSKWANIKHKKAAADAKRGKVWTRLIKEIQVAARLGGGDANSNPRLRLAVDKAADAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ + NY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPKDNVKRAIERGVGGA--DGANYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE GA+D ++D I ++
Sbjct: 119 KYGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALEAGADDVNTNEDGSIEVLCDWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++LE GFKAE + + M+P + F +A+K+QKLL+ L+ L DV++VYTNA+
Sbjct: 179 AFSQVKDALEAAGFKAELAEVTMKPQNEVEFTGDDAVKMQKLLDVLEDLDDVQEVYTNAV 238
Query: 240 IFD 242
I D
Sbjct: 239 IVD 241
>gi|74318233|ref|YP_315973.1| hypothetical protein Tbd_2215 [Thiobacillus denitrificans ATCC
25259]
gi|119372128|sp|Q3SGS9.1|Y2215_THIDA RecName: Full=Probable transcriptional regulatory protein Tbd_2215
gi|74057728|gb|AAZ98168.1| Protein of unknown function DUF28 [Thiobacillus denitrificans ATCC
25259]
Length = 243
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 161/245 (65%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T++++E+ VA G +P N +LRLAIEK +
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGGDPAMNPRLRLAIEKGKAES 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI AI++ + E +NY E RYEGY + G A++VDC+T+N+ RTV+++R+ F
Sbjct: 61 LPKDNIENAIKRGTGQL--EGVNYEEARYEGYGIGGVAVMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +G V F FKH GQ++ P + +++ AL+ GA+D + + D I ++TSP
Sbjct: 119 KHGGNMGTDGCVAFQFKHVGQIVLEPGASEEAVMEAALDAGADDVIPNDDGSIEVLTSPD 178
Query: 180 K--FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F +K +LE GFK + I MRP +A K+QK+L+ L+ L DV++VYTN
Sbjct: 179 PKAFEAVKEALEKAGFKPAVAEITMRPEAETELAGDDAAKMQKILDALESLDDVQEVYTN 238
Query: 238 ALIFD 242
A++ D
Sbjct: 239 AVLPD 243
>gi|241766063|ref|ZP_04763978.1| protein of unknown function DUF28 [Acidovorax delafieldii 2AN]
gi|241363919|gb|EER59213.1| protein of unknown function DUF28 [Acidovorax delafieldii 2AN]
Length = 239
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K N E + Y E+RYEGY + GAAII+D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKATGNA--EGMTYEEIRYEGYGIGGAAIIIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GG++ EGSV+F FKHCGQL+F P T ++ ++++ALE GAED + D D + ++T+P+
Sbjct: 119 KHGGSMGTEGSVVFQFKHCGQLIFAPGTSEDKVMEVALEAGAEDVVTDDDGAVEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G E +G+ MR + +A ++QKLL+ L+ L D ++VY NA
Sbjct: 179 DFEAVKNALEAAGLTPEVAGVTMRAENTVELSGDDAARMQKLLDVLEDLDDAQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|296135362|ref|YP_003642604.1| hypothetical protein Tint_0880 [Thiomonas intermedia K12]
gi|410693044|ref|YP_003623665.1| conserved hypothetical protein, yebC [Thiomonas sp. 3As]
gi|294339468|emb|CAZ87827.1| conserved hypothetical protein, yebC [Thiomonas sp. 3As]
gi|295795484|gb|ADG30274.1| protein of unknown function DUF28 [Thiomonas intermedia K12]
Length = 240
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 163/239 (68%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ T+I+RE+ A G +P+ N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKVWTKIIREISAAARLGGGDPNANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + + I K + E ++Y E+RYEGY V GAAII+DC+T+NR+RTV+ +R+ +
Sbjct: 61 MPADTVKKNIDKATGAL--EGVHYEEIRYEGYGVGGAAIIIDCLTDNRVRTVAEVRHALS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL EGSV F F+HCGQL+F P T ++ ++++ALE GA+D + D D I ++T P+
Sbjct: 119 KNGGNLGTEGSVAFQFRHCGQLVFAPGTSEDKVMEVALEAGADDVITDDDGAIEVLTPPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F ++ +LE + E + I MR + +A K+QKL++ L+ L DV++VY NA
Sbjct: 179 QFEAVRAALEAAALQPELAVITMRADNTVELAGDDAEKMQKLIDALEDLDDVQEVYHNA 237
>gi|114321639|ref|YP_743322.1| hypothetical protein Mlg_2492 [Alkalilimnicola ehrlichii MLHE-1]
gi|114228033|gb|ABI57832.1| protein of unknown function DUF28 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 250
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 167/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW+NI+ +K DAKRGKI T+ ++E+ VA G +PD+N +LRLAI++A N
Sbjct: 5 MAGHSKWSNIQHRKKAQDAKRGKIFTKHIKEITVAARMGGPDPDSNPRLRLAIDRAFAQN 64
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI++ +E++ Y E+RYEGY +GAA++VDC+T+NR RTVS++R+ F
Sbjct: 65 MPKDNVERAIKRGAG--LDESVEYEELRYEGYGPSGAALMVDCMTDNRNRTVSDVRHAFT 122
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+H G LL+ P T ++ L++ ALE GAED + + D+ + ++T+P
Sbjct: 123 KCGGNLGTDGSVSYLFQHRGVLLYPPGTDEDRLMEAALEAGAEDIVHNDDDSLEVLTTPE 182
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++L G + S + MRP + + +A + +L++ L+ L DV++VYTNA
Sbjct: 183 DYRPVRDALVAAGLEPAESDVTMRPDIMVTVEGEDARRTARLIDMLEDLDDVQRVYTNAD 242
Query: 240 I 240
I
Sbjct: 243 I 243
>gi|395009143|ref|ZP_10392710.1| DNA-binding regulatory protein, YebC/PmpR family [Acidovorax sp.
CF316]
gi|394312828|gb|EJE49938.1| DNA-binding regulatory protein, YebC/PmpR family [Acidovorax sp.
CF316]
Length = 239
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 163/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDLSANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K N E + Y E+RYEGY + G AI++D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNIDKATGNA--EGLTYEEIRYEGYGIGGVAIMIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GG++ EGSV+F FKHCGQL+F P T ++ ++++ALE GAED L D+D I ++T+P+
Sbjct: 119 KHGGSMGTEGSVVFQFKHCGQLIFAPGTDEDKVMEVALEAGAEDVLTDEDGAIEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G E S + MR I + +A+++QKLL+ L+ L D +++Y NA
Sbjct: 179 DFEAVKNALEAAGLAPEVSEVTMRAENTIELEGDDAVRMQKLLDILEDLDDAQEIYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|34498578|ref|NP_902793.1| hypothetical protein CV_3123 [Chromobacterium violaceum ATCC 12472]
gi|49037282|sp|Q7NTD5.1|Y3123_CHRVO RecName: Full=Probable transcriptional regulatory protein CV_3123
gi|34104432|gb|AAQ60790.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 241
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 167/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI TR+++E+ VA G + + N +LRLA++KA +
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTRLIKEITVAAKMGGGDANMNPRLRLAVDKAKAES 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI AI++ + + ++Y+E RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDNIENAIKRGTGQL--DGVDYVECRYEGYGIAGAAVMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F FKHCG L+F P ++ L++ ALE GAED + + D I +IT P
Sbjct: 119 KYGGNMGTDGCVAFQFKHCGYLVFAPGVDEDALMEAALEAGAEDVVSNDDGSIEVITGPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++K++LE GFK+E + MR +A+++QKLL+ L+ L DV+ VYT+A+
Sbjct: 179 EFSDVKDALEAKGFKSEMGEVTMRAENETELSGDDAVRMQKLLDALEDLDDVQDVYTSAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|337279762|ref|YP_004619234.1| hypothetical protein Rta_21200 [Ramlibacter tataouinensis TTB310]
gi|334730839|gb|AEG93215.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 241
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 164/241 (68%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TR++RE+ VA G + + N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRVIREIMVAARQGGGDLNANPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R I K N+ E +NY E+RYEGY + GAAIIVD +T+N++RTV+ +R++F+
Sbjct: 61 MPADTIKRNIDKATGNL--EGVNYEEIRYEGYGIGGAAIIVDTMTDNKVRTVAEVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL EGSV F F+H GQL+ P ++ ++++ALE GA+D + D+D I ++T PS
Sbjct: 119 KYGGNLGTEGSVAFQFRHVGQLVLAPGQSEDRVMEVALEAGADDVVADEDGAIEVLTVPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G + E + + MRP I +A ++QKLL+ L+ L DV+ V+ NA
Sbjct: 179 GFEAVKNALEAAGLQPEVAEVTMRPENTIELSGDDAARMQKLLDMLEDLDDVQDVFHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|226941264|ref|YP_002796338.1| hypothetical protein LHK_02347 [Laribacter hongkongensis HLHK9]
gi|254801302|sp|C1DAZ0.1|Y2347_LARHH RecName: Full=Probable transcriptional regulatory protein LHK_02347
gi|226716191|gb|ACO75329.1| DUF28 domain containing protein [Laribacter hongkongensis HLHK9]
Length = 241
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 168/241 (69%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI TR+++E+ VA G + +N +LRLA++KA +
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTRLIKEITVAAKMGGADLGSNPRLRLAVDKAKAES 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI AI++ + + ++YIE RYEGY + GAA++VDC+T+N+ RTV+++R+ F+
Sbjct: 61 MPKDNIENAIKRGAGLL--DGVDYIECRYEGYGIGGAAVMVDCLTDNKTRTVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F F HCG L+F P T ++ L++ ALE GA+D + + D I +IT P+
Sbjct: 119 KFGGNMGTDGCVAFQFTHCGYLVFAPGTDEDALMEAALESGADDVVSNDDGSIEVITDPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +IK++LE GFKAE + MR +A+++QKLL+ L+ L DV++VYT+A+
Sbjct: 179 SFSDIKDALEAKGFKAEMGEVTMRAQNETELSGDDAVRMQKLLDALEDLDDVQEVYTSAV 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|118594336|ref|ZP_01551683.1| hypothetical protein MB2181_01670 [Methylophilales bacterium
HTCC2181]
gi|118440114|gb|EAV46741.1| hypothetical protein MB2181_01670 [Methylophilales bacterium
HTCC2181]
Length = 242
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI +++ +E+ VA G + N +LR A+ A + N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFSKLTKEITVAARMGGGDINFNPRLRSAVTAAKEEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + E +NY E+RYEGY +NGAAII+DC+T+N+ R V+++R+ N
Sbjct: 61 MPIDNITRAIKKGTGEL--EGVNYEEIRYEGYGINGAAIIIDCLTDNKQRAVADVRHALN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV F+FKHCG F P ++ L++ A+E GA+D + D I +IT PS
Sbjct: 119 KNGGNLGTDGSVAFLFKHCGIFFFAPGNDQDKLMEEAIELGADDVINHDDGSIEVITGPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+++ +K + FK E + + M+P + F + + K+Q++L+ L+ L DV+ VY+NA
Sbjct: 179 EYLSVKEGFSNSDFKYEFAELTMKPDVEVKFNESDGEKMQRILDVLEDLDDVQNVYSNAS 238
Query: 240 IFD 242
I D
Sbjct: 239 IGD 241
>gi|239815664|ref|YP_002944574.1| hypothetical protein Vapar_2683 [Variovorax paradoxus S110]
gi|239802241|gb|ACS19308.1| protein of unknown function DUF28 [Variovorax paradoxus S110]
Length = 241
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 161/241 (66%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TR +RE+ VA G N +LRLA+EKA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKLWTRAIREITVAARAGGGDLSANPRLRLAVEKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + R I K N+ E +NY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 LPIDTVKRNIDKATGNL--EGVNYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV F FKHCGQ++F P T ++ +++ ALE GAED + D D I +IT+ +
Sbjct: 119 KHGGNMGTEGSVAFQFKHCGQIIFAPGTNEDKVMEAALEAGAEDVVTDDDGAIEVITAVA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G K E + + MR I +A ++QKLL+ L+ L DV++VY NA
Sbjct: 179 DFEAVKNALEAAGLKPEVAEVTMRAENTIELTGEDAARMQKLLDVLEDLDDVQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|388565801|ref|ZP_10152283.1| hypothetical protein Q5W_0604 [Hydrogenophaga sp. PBC]
gi|388266964|gb|EIK92472.1| hypothetical protein Q5W_0604 [Hydrogenophaga sp. PBC]
Length = 241
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TR++RE+ VA + G +P N +LRLAIEKA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRVIREITVAARSGGGDPAMNPRLRLAIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I + K + + E ++ E+RYEGY + GAA+I+D +T+NR+RTV+ +R+ F+
Sbjct: 61 MPADRIKYNVDKASGTL--EGLSLEEIRYEGYGIGGAAVILDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL EGSV F FKHCGQL+F P T ++ +++ ALE GAED + D + I ++T P+
Sbjct: 119 KYGGNLGTEGSVAFQFKHCGQLIFAPGTSEDAVMEAALEAGAEDVITDDEGAIEVLTPPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++LE G KAE + + MR I + ++QKLL+ L+ L DV+ V+ NA
Sbjct: 179 DFEAVKDALEAKGLKAEFAEVTMRAENTIALSGEDGARMQKLLDILEDLDDVQNVFHNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|398807868|ref|ZP_10566739.1| DNA-binding regulatory protein, YebC/PmpR family [Variovorax sp.
CF313]
gi|398088752|gb|EJL79305.1| DNA-binding regulatory protein, YebC/PmpR family [Variovorax sp.
CF313]
Length = 241
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TR +RE+ VA G + +N +LRLA+EKA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKLWTRAIREITVAARAGGADLGSNPRLRLAVEKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R I K N+ E +NY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 LPIDTIKRNIDKATGNL--EGVNYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV F FKHCGQ +F P T ++ ++++ALE GAED + D D I +IT+ +
Sbjct: 119 KHGGNMGTEGSVAFQFKHCGQFVFAPGTSEDKVMEVALEAGAEDVVTDDDGAIEVITAVA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +KN+LE G K +++ + MR + +A ++QKLL+ L+ L DV+ VY NA
Sbjct: 179 DFEAVKNALEAAGLKPDAAEVTMRAENTVDVTGEDAARMQKLLDVLEDLDDVQDVYHNA 237
>gi|89900860|ref|YP_523331.1| hypothetical protein Rfer_2075 [Rhodoferax ferrireducens T118]
gi|119372120|sp|Q21WQ3.1|Y2075_RHOFD RecName: Full=Probable transcriptional regulatory protein Rfer_2075
gi|89345597|gb|ABD69800.1| protein of unknown function DUF28 [Rhodoferax ferrireducens T118]
Length = 244
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 163/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TRI+RE+ VA G + TN +LRLA+E+A AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKVWTRIIREITVAARAGGADLGTNPRLRLAVERAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I K + + E + Y E+RYEGY + GAAI+VD +T+N++RTV+ +R+ F
Sbjct: 61 MPADRIKYNIDKASGTL--EGVQYEEIRYEGYGIGGAAILVDTMTDNKVRTVAEVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKHCGQL+F P T ++ ++++ALE GAED + D D I ++T+
Sbjct: 119 KFGGNMGAEGSVAFQFKHCGQLIFAPGTNEDKVMEVALESGAEDVITDDDGAIEVLTAYP 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+LE G K E++ + MR I +A+++QKLL+ L+ L DV+++Y NA
Sbjct: 179 DFEAVKNALEAAGLKPEAADVTMRAENPIELTGDDAVRMQKLLDALEDLDDVQEIYHNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|378823765|ref|ZP_09846357.1| DNA-binding regulatory protein, YebC/PmpR family [Sutterella
parvirubra YIT 11816]
gi|378597418|gb|EHY30714.1| DNA-binding regulatory protein, YebC/PmpR family [Sutterella
parvirubra YIT 11816]
Length = 247
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 161/245 (65%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKR + T+++RE+ VA G +PDTN +LRLA+ KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRSNLWTKLVREIIVAARMGGGDPDTNSRLRLALVKARGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI K + E ++Y E+RYEGY + GAAII+DC T+NR+RTV+++R+ +
Sbjct: 61 VPKDTIQNAILKGTGQL--EGVSYEEIRYEGYGLGGAAIIIDCTTDNRVRTVADVRHALS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLID-KDNKITIITS 177
K+GGNL EGSV FMFKH G+ F P T ++ ++++ALE GA+D + D +D I +
Sbjct: 119 KHGGNLGTEGSVSFMFKHAGEFFFAPGTATEDAVMEVALEAGADDVVTDPEDGSIEVTCE 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P +F + + E G S I +P + +A+K++KL++ L+ L DV++VYT+
Sbjct: 179 PEQFDAVSKAFEAAGMTPALSEITYKPLNETKLEGADAVKMRKLIDALEDLDDVQQVYTS 238
Query: 238 ALIFD 242
A +FD
Sbjct: 239 A-VFD 242
>gi|375107066|ref|ZP_09753327.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderiales
bacterium JOSHI_001]
gi|374667797|gb|EHR72582.1| DNA-binding regulatory protein, YebC/PmpR family [Burkholderiales
bacterium JOSHI_001]
Length = 241
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 160/239 (66%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK TR++RE+ VA G +P N +LRLAIEKA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKAWTRVIREIMVAARLGGGDPGANPRLRLAIEKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + R I K N+ E ++Y E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 LPVDTVKRNIDKATGNL--EGVSYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ +GSV F FKHCGQ++ P T ++ ++++ALE GA+D + D I ++T P+
Sbjct: 119 KHGGNMGTDGSVSFQFKHCGQIILAPGTNEDKVMEVALEAGADDVITADDGAIEVLTPPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F +KN+LE G K E + + MR + +A ++QKLL+ L+ L D + V+ NA
Sbjct: 179 EFEAVKNALEAAGLKPEVAEVTMRAENTVALAGDDAARMQKLLDVLEDLDDTQDVFHNA 237
>gi|347818082|ref|ZP_08871516.1| hypothetical protein VeAt4_02774 [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 239
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 163/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TRI+RE+ VA + G +P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKVWTRILREVTVAARSGGGDPSANPRLRLAMDKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P I I K N E ++Y E+RYEGY + GAAII+D +T+NR+RTV+ +R+ F+
Sbjct: 61 LPAERIKYNIDKATGNA--EGLHYEEIRYEGYGIGGAAIIIDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GG++ EGSV F FKHCGQL+F P + ++ +L++ALE GAED + +D I ++T+P+
Sbjct: 119 KHGGSMGTEGSVRFQFKHCGQLIFAPGSSEDKVLEVALEAGAEDVVTGEDGAIEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+L+ G + + MR + + +A ++QKLL+ L+ L D ++VY NA
Sbjct: 179 DFEAVRNALQAAGLAPALAEVTMRAENTVELEGEDAARMQKLLDVLEDLDDAQEVYHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|303256643|ref|ZP_07342657.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
gi|302860134|gb|EFL83211.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
Length = 240
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ +K DAKR + T+++RE+ VA G +PD N +LRL++ KA AN
Sbjct: 1 MSGHSKWANIQHRKGRQDAKRSNLWTKVIREIIVAARLGGGDPDMNPRLRLSLLKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + AI K + E NY E+RYEGY V GAA+I+DC T+NR RTV+++R+I +
Sbjct: 61 VPKDTVKNAILKGTGQL--EGANYEEIRYEGYGVGGAALIIDCTTDNRTRTVADVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV FMFKHCG LF P K++ ++++AL+ GA+D + D+D I + PS
Sbjct: 119 KNGGNLGTDGSVSFMFKHCGYFLFAPGLKEDDVMEVALDNGADDVVSDEDGSIEVTCDPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + G++ E + + + + V +A ++Q+L++ L+ L DV +VYT A+
Sbjct: 179 AFEALHKAFTDKGWEPEVAEVTWKSESETVLTGDDAERMQRLIDALEDLDDVSEVYTTAV 238
Query: 240 I 240
Sbjct: 239 F 239
>gi|319793376|ref|YP_004155016.1| hypothetical protein Varpa_2707 [Variovorax paradoxus EPS]
gi|315595839|gb|ADU36905.1| protein of unknown function DUF28 [Variovorax paradoxus EPS]
Length = 241
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ TR +RE+ VA G N +LRLA+EKA N
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKLWTRAIREITVAARAGGGDLSANPRLRLAVEKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + R I K N+ E +NY E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 LPIDTVKRNIDKATGNL--EGVNYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV F FKHCGQ++F P T ++ ++++ALE GAED + D D I +IT+
Sbjct: 119 KHGGNMGTEGSVAFQFKHCGQIIFAPGTDEDKVMEVALEAGAEDVVTDDDGAIEVITAVG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +KN+LE G +++ + MR I +A K+QKLL+ L+ L DV+ VY NA
Sbjct: 179 GFEAVKNALEAAGLAPDAAEVTMRAENPIEVAGEDAAKMQKLLDVLEDLDDVQAVYHNA 237
>gi|301632143|ref|XP_002945150.1| PREDICTED: UPF0082 protein Ajs_1898-like [Xenopus (Silurana)
tropicalis]
Length = 306
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 159/245 (64%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
+AGHSKWANI+ +K D KRGK+ TRI+RE+ VA G +P TN +LRLAI+KA AN
Sbjct: 64 VAGHSKWANIQHRKGRQDEKRGKVWTRIIREIMVAARQGGGDPMTNPRLRLAIDKAKAAN 123
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R + K N+ E + Y E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 124 MPTDNIKRNVDKATGNL--EGVVYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFS 181
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ EGSV F FKHCGQL+F P ++ ++++ALE GA D + D+D I ++T+P
Sbjct: 182 KYGGNMGTEGSVAFQFKHCGQLVFAPGMSEDKVMEVALEAGAGDVIADEDGAIEVLTAPG 241
Query: 180 KFIEIKNSLEMTGFKAESS----GIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
F ++++LE G K E + ++QKLL+ +++L DV+ VY
Sbjct: 242 DFEAVRDALEAAGLKPEVAEGRXXXXXXXXXXXXXXXXXXARMQKLLDMIEELDDVQDVY 301
Query: 236 TNALI 240
NA +
Sbjct: 302 HNAAL 306
>gi|254448972|ref|ZP_05062426.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
HTCC5015]
gi|198261366|gb|EDY85657.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
HTCC5015]
Length = 247
Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K VDAKRGKI T++++E+ VA G + D+N +LRLAI+KAL +
Sbjct: 1 MAGHSKWANIQHRKKAVDAKRGKIFTKLVKEITVAARMGGGDTDSNPRLRLAIDKALGQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+++ ++ E +NY E+RYEGY G A++VDC+T+N+ R+V+ +R+ F+
Sbjct: 61 MPKDNIERAVKRGTGDL--EGVNYEEIRYEGYGPGGVAVMVDCMTDNKNRSVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV F+F G L + P T + +++ ALE GA+D + + D I ++T P
Sbjct: 119 KCGGNLGTDGSVAFLFSQTGILSYPPGTSEEAIMEAALEGGADDVVTNDDASIDVLTQPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F+++K +L K E+ + M+P T+ A ++ KL + L+ L DV+ VYTNA
Sbjct: 179 QFVDVKEALIAADLKPENDEVTMKPSTDAPLDVDTARQMLKLQDMLEDLDDVQNVYTNA 237
>gi|319942478|ref|ZP_08016789.1| hypothetical protein HMPREF9464_02008 [Sutterella wadsworthensis
3_1_45B]
gi|319803951|gb|EFW00867.1| hypothetical protein HMPREF9464_02008 [Sutterella wadsworthensis
3_1_45B]
Length = 246
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 155/240 (64%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ +K DAKR + T+++RE+ VA G +PDTN +LRLA+ KA N
Sbjct: 1 MSGHSKWANIQHRKGRQDAKRSNLWTKLVREIIVAARMGGGDPDTNSRLRLALIKARGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI K + E ++Y +VRYEGY V GAA+I+DC T+NR+RTV+++R+I +
Sbjct: 61 VPKDTIQNAILKGTGQL--EGVSYEDVRYEGYGVGGAALIIDCTTDNRVRTVADVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL EGSV FMF H G F P ++ ++++AL+ GAED + D+D I + +P
Sbjct: 119 KNGGNLGTEGSVAFMFNHVGDFFFAPGVATEDQVMEVALDAGAEDVISDEDGSIEVTCAP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F + + E G K E + I +P EA ++Q+L++ L +L DV++VY +A
Sbjct: 179 EAFDAVSKAFEAAGLKPEMAEITWKPTNETHLAGEEAARMQRLIDALDELDDVQQVYCSA 238
>gi|260219518|emb|CBA26363.1| UPF0082 protein Aave_3203 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 239
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 163/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G +P N +LRLAIEKA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIVREITVAARQGGGDPAMNPRLRLAIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + + K ++ + I+Y E+RYEGY + GAAIIVD +T+N++RTV+ +R+ F+
Sbjct: 61 MPADRVKYNVDKATGSL--DGISYEEIRYEGYGIGGAAIIVDTMTDNKVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV F FKH GQ++F P T ++ ++++ALE GAED + D + I ++T+P+
Sbjct: 119 KHGGNMGTEGSVAFQFKHVGQMIFAPGTSEDKVMEVALEAGAEDVITDDEGAIEVLTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G AE + + MR + I +A ++QKLL+ L+ L D + ++ NA
Sbjct: 179 DFEAVKAALEAAGLTAEVATVTMRSDSTIELSGEDAERMQKLLDVLEDLDDTQDIFHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|330999284|ref|ZP_08323001.1| DNA-binding regulatory protein, YebC/PmpR family [Parasutterella
excrementihominis YIT 11859]
gi|329575142|gb|EGG56693.1| DNA-binding regulatory protein, YebC/PmpR family [Parasutterella
excrementihominis YIT 11859]
Length = 240
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ +K DAKR + T+++RE+ VA G +PD N +LRL++ KA AN
Sbjct: 1 MSGHSKWANIQHRKGRQDAKRSNLWTKVIREIIVAARLGGGDPDMNPRLRLSLLKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + AI K + E NY E+RYEGY V GAA+I+DC T+NR RTV+++R+I +
Sbjct: 61 VPKDTVKNAILKGTGQL--EGANYEEIRYEGYGVGGAALIIDCTTDNRTRTVADVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV FMFKHCG LF P K++ ++++AL+ GA+D + ++D I + P+
Sbjct: 119 KNGGNLGTDGSVSFMFKHCGYFLFAPGLKEDDVMEVALDNGADDVVTEEDGSIEVTCDPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + G++ E + + + + V +A ++Q+L++ L+ L DV +VYT A+
Sbjct: 179 AFEALHKAFTDKGWEPEVAEVTWKSDSETVLTGDDAERMQRLIDALEDLDDVSEVYTTAV 238
Query: 240 I 240
Sbjct: 239 F 239
>gi|345865428|ref|ZP_08817612.1| UPF0082 protein [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345123434|gb|EGW53330.1| UPF0082 protein [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 248
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK D KRGKI T+++RE+ VA G N +LRLA++K L AN
Sbjct: 1 MAGHSKWANIKHKKAANDKKRGKIWTKLIREITVAARMGGGDIGANPRLRLAVDKGLGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RA+++ E NY E+RYEGY GAA+IVDC+T+NR RT S +R+ F+
Sbjct: 61 MPKDTIDRAVKRGAG--AGEGENYDELRYEGYGPGGAAVIVDCMTDNRNRTASEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF G + + P ++ +++ ALE GAED + + D I ++TSP
Sbjct: 119 KLGGNLGTDGSVAYMFSKQGVISYAPGVDEDAVMEAALEAGAEDVVTNDDGSIDVMTSPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K+++ GF+ +++ + T+ V + +A K+ ++++ L+ L DV+ VYTNA
Sbjct: 179 DFSDVKDAMIAAGFEPDNAEVTFSAATSTVLEGKDAEKMLRMIDMLEDLDDVQNVYTNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|121604633|ref|YP_981962.1| hypothetical protein Pnap_1728 [Polaromonas naphthalenivorans CJ2]
gi|120593602|gb|ABM37041.1| protein of unknown function DUF28 [Polaromonas naphthalenivorans
CJ2]
Length = 241
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGKI TR++RE+ VA G TN +LRLA+EKA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDDKRGKIWTRVIREIMVAARLGGGDLATNPRLRLAVEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ + R I K N+ E ++Y EVRYEGY + GAAI+VDC+T+N++RTV+ +R+ F+
Sbjct: 61 LAAETVKRNIDKATGNL--EGVHYEEVRYEGYGIGGAAILVDCMTDNKVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGN+ EGSV+F FKHCGQL+F P T ++ ++++ALE GA+D + +D I ++T +
Sbjct: 119 KHGGNMGTEGSVVFQFKHCGQLIFAPGTSEDKVMEVALEAGADDVIAHEDGAIEVLTPYT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +KN+LE G E + + MR I +A K+QKLL+ L+ L D ++V+ NA
Sbjct: 179 ELETVKNALEAAGLTPELAEVTMRADNTIELTGEDAQKMQKLLDVLEDLDDTQEVFHNA 237
>gi|88811439|ref|ZP_01126694.1| hypothetical protein NB231_11909 [Nitrococcus mobilis Nb-231]
gi|88791328|gb|EAR22440.1| hypothetical protein NB231_11909 [Nitrococcus mobilis Nb-231]
Length = 247
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G NPD N +LRLAI++AL N
Sbjct: 1 MAGHSKWANIQHRKKAQDAKRGKIFTKLIREITVAARVGGPNPDLNPRLRLAIDRALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI++ +E +Y E R+EGY G AI+ DC+T+NR RTVS +R F+
Sbjct: 61 MPKDNIERAIKRGAGT--DELESYEEPRFEGYGPAGVAIMADCMTDNRNRTVSEVRFAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +G V ++F+ G +F P++ ++ +L++ALE GAED D + +++SP
Sbjct: 119 KYGGNLGTDGCVAYLFRRQGVFVFPPHSDEDRILEVALEAGAEDIANSDDGSVEVLSSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K +LE+ + I MRP T +V E K+ K++ L+ L DV+ VYTNA
Sbjct: 179 HYDAVKQALELADLHPADAEITMRPETTVVLGAEEGRKVLKIIEHLEDLDDVQHVYTNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|77163675|ref|YP_342200.1| hypothetical protein Noc_0137 [Nitrosococcus oceani ATCC 19707]
gi|254435466|ref|ZP_05048973.1| conserved hypothetical protein TIGR01033 [Nitrosococcus oceani
AFC27]
gi|119391262|sp|Q3JES6.1|Y137_NITOC RecName: Full=Probable transcriptional regulatory protein Noc_0137
gi|76881989|gb|ABA56670.1| Protein of unknown function DUF28 [Nitrosococcus oceani ATCC 19707]
gi|207088577|gb|EDZ65849.1| conserved hypothetical protein TIGR01033 [Nitrosococcus oceani
AFC27]
Length = 248
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ TR++RE+ VA G +P T+ +LR AI+KA AN
Sbjct: 1 MAGHSKWANIQYRKGAQDAKRGKLFTRLIREITVAARLEGGDPATSPRLRTAIDKAFAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI++ ++ E + Y EVRYEGY G A++VDC+T+NR RTV+ IR++F+
Sbjct: 61 MPKDNIERAIKRGTGDL--EGVAYEEVRYEGYGPYGVAVMVDCMTDNRNRTVAEIRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + + ++ ++++A+E GAED + ++D+ I + T P
Sbjct: 119 KWGGNLGTDGSVAYLFSKKGIISYSKESNEDAIMEVAIEGGAEDVVTNEDSSIDVFTEPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F +K +L+ G KAE + I T++ EA K+ L+ L++L DV++VY+NA
Sbjct: 179 EFSTVKKALDEAGLKAEQAEITQHASTSVSLALEEARKMLDFLDALEELDDVQQVYSNA 237
>gi|121611154|ref|YP_998961.1| hypothetical protein Veis_4238 [Verminephrobacter eiseniae EF01-2]
gi|166227237|sp|A1WQN6.1|Y4238_VEREI RecName: Full=Probable transcriptional regulatory protein Veis_4238
gi|121555794|gb|ABM59943.1| protein of unknown function DUF28 [Verminephrobacter eiseniae
EF01-2]
Length = 239
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRG+I TRIMRE+ VA G N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGRIWTRIMREITVAARAGGGDLSANPRLRLALDKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P I I K N E +Y E+RYEGY + GAAIIVD +T+NR+RTV+ +R+ F+
Sbjct: 61 MPAERIKYNIDKATGNA--EGQSYEEIRYEGYGIGGAAIIVDTMTDNRLRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+G N+ EGSV+F FKHCGQL++ P + ++ ++++AL+ GAED ++ +D I ++T P+
Sbjct: 119 KHGANMGTEGSVVFQFKHCGQLVYAPGSSEDQVMEVALQAGAEDVIMGEDGAIEVLTLPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +KN+L+ G + E + + MR I + +A ++QKLL+ L+ L D + VY NA
Sbjct: 179 DFEAVKNALQAAGLRPELAEVTMRAENTIELQGEDAARMQKLLDALEDLDDTQAVYHNAT 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|345870857|ref|ZP_08822807.1| UPF0082 protein yeeN [Thiorhodococcus drewsii AZ1]
gi|343921326|gb|EGV32047.1| UPF0082 protein yeeN [Thiorhodococcus drewsii AZ1]
Length = 249
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D +RGK+ T+++RE+ VA G +P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKQRGKVWTKLIREVTVAAREAGGDPAANPRLRLAMDKAFGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RAI++ + E NY E+RYEGY G AI+VDC+++NR RT S +R+ F
Sbjct: 61 MPRDTVDRAIKRGAGGM--EGDNYEEIRYEGYGPGGVAIMVDCMSDNRNRTASEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P T ++T+++ ALE GAED +++ D + ++T+P
Sbjct: 119 KRGGNLGTDGSVSYLFTKQGVISFQPGTDEDTVMEAALEGGAEDVVVNDDGSLDVVTAPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K++L GF E + I T A KL KL+ L+ L DV++VY NA
Sbjct: 179 EFAAVKDALTQAGFDTEVAEITYNASTQAELDQETAEKLLKLVEMLEDLDDVQEVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|91787843|ref|YP_548795.1| hypothetical protein Bpro_1967 [Polaromonas sp. JS666]
gi|118574106|sp|Q12C45.1|Y1967_POLSJ RecName: Full=Probable transcriptional regulatory protein Bpro_1967
gi|91697068|gb|ABE43897.1| protein of unknown function DUF28 [Polaromonas sp. JS666]
Length = 243
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KR ++ TR+MRE+ VA G TN +LRLA++KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRQRVWTRVMREIMVAARMGGGDLGTNPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +N+ I K ++ E ++Y EVRYEGY GAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61 MPADNVKYGIAKATGSL--EGVHYEEVRYEGYGFGGAAIIVDCMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GG++ EGSV F FKHCGQL+F P T ++ ++++ALE GA+D + D I ++T +
Sbjct: 119 KHGGHMGTEGSVAFQFKHCGQLIFAPGTSEDKVMEVALEAGADDVITHDDGAIEVLTPYT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +LE G K E + + MR I +A K+QKLL+ L+ L D ++V+ NA
Sbjct: 179 DFEAVKKALEAAGLKPELAEVTMRADNMIELTGEDARKMQKLLDVLEDLDDTQEVFHNAA 238
Query: 240 I 240
+
Sbjct: 239 L 239
>gi|254468275|ref|ZP_05081681.1| conserved hypothetical protein TIGR01033 [beta proteobacterium
KB13]
gi|207087085|gb|EDZ64368.1| conserved hypothetical protein TIGR01033 [beta proteobacterium
KB13]
Length = 241
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 162/241 (67%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T++++E+ V+ G +P+ N +LR AI A D N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVSARMSGGDPNFNPRLRAAIAAAKDEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + E +NY E+RYEGY +NGAAIIVDC+T+N+ R V+++R+ F+
Sbjct: 61 MPAENITRAIKRGTGEL--EGVNYEEIRYEGYGINGAAIIVDCLTDNKNRAVADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +G V FMFKHCG + F P + + +++ A++ GAED I++D I +IT P+
Sbjct: 119 KNGGNLGTDGCVAFMFKHCGSIFFAPGSNEEEIMEKAIDLGAEDVEINEDGSIEVITPPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ IK + E K E + + M+ + E K+QK+L+ L L DV++VYTNA+
Sbjct: 179 DFLIIKEAFEKENLKFEMAELTMKADNEVELSGDEGTKMQKILDVLDDLDDVQEVYTNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|431932849|ref|YP_007245895.1| YebC/PmpR family DNA-binding regulatory protein [Thioflavicoccus
mobilis 8321]
gi|431831152|gb|AGA92265.1| DNA-binding regulatory protein, YebC/PmpR family [Thioflavicoccus
mobilis 8321]
Length = 249
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D +RGK+ T+++RE+ VA G +P+ N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKQRGKVWTKLIREVTVAAREGGGDPNANPRLRLAMDKAFGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RA+++ + + EN Y E+RYEGY G A++VDC+T+NR RT + +R+ F
Sbjct: 61 MPRDTVERAVKRGAGDTEGEN--YEELRYEGYGPGGTAVMVDCMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P T ++T+++ ALE GAED +++ D+ + +IT+P
Sbjct: 119 KYGGNLGTDGSVAYLFTKQGIISFQPGTDEDTVIEAALEAGAEDVIVNDDSSLDVITTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L G E++ + T A +L KL++ L+ L DV++VY NA
Sbjct: 179 DFAAVKDALTTAGLDTEAAEVTFNASTQAELDAETAERLLKLVDALEDLDDVQEVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|335041526|ref|ZP_08534553.1| hypothetical protein MAMP_00031 [Methylophaga aminisulfidivorans
MP]
gi|333788140|gb|EGL54022.1| hypothetical protein MAMP_00031 [Methylophaga aminisulfidivorans
MP]
Length = 249
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G ++P +N +LR AI+KAL AN
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKLFTKLIREITVAAKMGGSDPASNPRLRAAIDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA ++ + E +NY E+RYEGY NG AI+VDC+T+NR RTV+ +RN+F
Sbjct: 61 MTKDVIERATKRGAGEL--EGVNYEEIRYEGYGPNGTAIMVDCMTDNRNRTVAAVRNVFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F+F G + T ++ ++++ALE GAED + + D I + TSP
Sbjct: 119 KRGGNMGTDGCVAFLFNKKGIISLASGTDEDAVMEVALEAGAEDIVTNADGSIDVFTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++L+ G +AES+ + M P T + +A K ++ + L DV++VY+NA
Sbjct: 179 DYSTVKDALDAAGLEAESAQVTMHPDTTVSLDVDDAQKAINMIEAFEDLDDVQEVYSNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FSD 241
>gi|422348638|ref|ZP_16429530.1| YebC/PmpR family DNA-binding regulatory protein [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404659105|gb|EKB31965.1| YebC/PmpR family DNA-binding regulatory protein [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 244
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKR + T+++RE+ VA G +P++N +LRLA+ KA N
Sbjct: 1 MAGHSKWANIQHRKGRQDAKRSNLWTKLVREIIVAARMGGGDPESNSRLRLALIKARGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI K + E ++Y E+RYEGY + GAA+I+DC T+NR+RTV+++R+
Sbjct: 61 VPKDTISNAILKGTGQL--EGVSYEEIRYEGYGIGGAALIIDCTTDNRVRTVADVRHALT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL EGSV FMFKH G+ +F P T ++ ++++ALE GA+D + D+D I + P
Sbjct: 119 KHGGNLGTEGSVSFMFKHIGEFVFAPGVTTEDAVMEIALEAGADDVVSDEDGSIEVTCEP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F + + E G + S I + + +A K+QKL++ L+ L DV++VYT+A
Sbjct: 179 AAFDAVSKAFEAAGIEPVVSEITYKALNEVKLTGEDAEKMQKLIDALEDLDDVQQVYTSA 238
>gi|372266979|ref|ZP_09503027.1| hypothetical protein AlS89_03732 [Alteromonas sp. S89]
Length = 247
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 151/240 (62%), Gaps = 2/240 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DAKRGK+ T+I+REL VA G NPD N LR I+KAL AN+
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKVFTKIIRELTVAAKSGGNPDDNPALRATIDKALGANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I +AI + N EN Y V YEGY V G A++V+C+T+NR RTV+ +R+ F K
Sbjct: 61 KRDTIDKAIARGAGNADGEN--YEAVTYEGYGVGGVAVLVECLTDNRNRTVAEVRHAFTK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL +GSV ++F GQ+ + ++ L++ ALE GAED + D I + T +
Sbjct: 119 RGGNLGTDGSVAYLFARKGQMYYEAGADEDALMEAALEAGAEDIETNDDGSIEVTTEFTD 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
++ +K++L GFK +++ I M P T + A K+ L++ L+ L DV+ VYTNA I
Sbjct: 179 YMSVKDALTEAGFKPDNAEIAMIPSTTVPMDKDGAEKVLALVDMLEDLDDVQNVYTNADI 238
>gi|357404397|ref|YP_004916321.1| hypothetical protein MEALZ_1033 [Methylomicrobium alcaliphilum 20Z]
gi|351717062|emb|CCE22727.1| conserved hypothetical protein [Methylomicrobium alcaliphilum 20Z]
Length = 250
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ VA G +P +N LR AI+KAL AN
Sbjct: 1 MAGHSKWANIKHRKAGQDAKRGKIFTKMIREISVAAKAGGGDPASNPTLRTAIDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I I+K ++ EN Y EVRYEGY G AI+VDC+T+NR RTV +R+ F+
Sbjct: 61 MKRDTIDNTIKKATGALEAEN--YEEVRYEGYGPAGVAIMVDCLTDNRNRTVGEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F + ++ +++ ALE GA+D + ++D I +IT+P
Sbjct: 119 KAGGNLGTDGSVAYLFNKVGIISFPDSVDEDAVIEAALEAGADDVVTNEDGSIDVITAPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++++K +L FK E+S I M+P T+ EA KL +L++ L+ L DV+ VY+NA
Sbjct: 179 SYMDVKEALIAKDFKPENSEITMQPSTSAELNAEEAEKLMRLIDRLEDLDDVQNVYSNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|300112850|ref|YP_003759425.1| hypothetical protein Nwat_0126 [Nitrosococcus watsonii C-113]
gi|299538787|gb|ADJ27104.1| protein of unknown function DUF28 [Nitrosococcus watsonii C-113]
Length = 249
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 165/242 (68%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ TR++RE+ VA G +P T+ +LR AI+KA AN
Sbjct: 1 MAGHSKWANIQYRKGAQDAKRGKLFTRLIREITVAARLEGGDPATSPRLRTAIDKAFAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI++ ++ E + Y EVRYEGY +G A++VDC+T+NR RTV+ IR++F+
Sbjct: 61 MPKDNIERAIKRGTGDL--EGVAYEEVRYEGYGPHGVAVMVDCMTDNRNRTVAEIRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + + ++ ++++A+E GAED + ++D+ I + T P
Sbjct: 119 KWGGNLGTDGSVAYLFSKKGIISYAKESNEDAIMEVAIEGGAEDVVTNEDSSIDVFTEPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNI---VFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+F+ +K +L+ G KAE + I T++ + +D A K+ L+ L+ L DV++VY+
Sbjct: 179 EFLTVKKALDKAGLKAEQAEITQHASTSVSLALLED--ARKMLDFLDALEDLDDVQQVYS 236
Query: 237 NA 238
NA
Sbjct: 237 NA 238
>gi|390949089|ref|YP_006412848.1| YebC/PmpR family DNA-binding regulatory protein [Thiocystis
violascens DSM 198]
gi|390425658|gb|AFL72723.1| DNA-binding regulatory protein, YebC/PmpR family [Thiocystis
violascens DSM 198]
Length = 249
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D +RGK+ T+++RE+ VA G +P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKQRGKMWTKLIREVTVAARESGGDPGANPRLRLAMDKAFGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RAI++ ++ EN Y E+RYEGY G A++VDC+T+NR RT S +R+ F
Sbjct: 61 MPRDTVERAIKRGAGGMEGEN--YEEIRYEGYGPGGVAVMVDCMTDNRNRTASEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P + ++ +++ ALE GAED + D + +IT+P
Sbjct: 119 KRGGNLGTDGSVSYLFTKQGVISFPPGSDEDAVMEAALEAGAEDVTANDDGSLDVITAPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L GF+ E + I T + A KL KL+ L+ L DV++VY NA
Sbjct: 179 TFAAVKDALTAAGFETEIAEIGFNAATEVELDQETADKLLKLVEMLEDLDDVQEVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|344942859|ref|ZP_08782146.1| UPF0082 protein yeeN [Methylobacter tundripaludum SV96]
gi|344260146|gb|EGW20418.1| UPF0082 protein yeeN [Methylobacter tundripaludum SV96]
Length = 248
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ VA+ G + +N LR A++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAGQDAKRGKIFTKMLREITVAVKTSGPDAASNPALRTAVDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I AI+K + + E +NY VRYEGY G A++VDC+T+NR RTV +R+ F+
Sbjct: 61 MRRDTIDTAIKKASGAL--EGVNYEVVRYEGYGPGGTAVMVDCLTDNRNRTVGEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G L + P+ ++ L++ ALE GAED +++ D + ++T+P
Sbjct: 119 KAGGNLGTDGSVAYLFSKIGILSYAPSVDEDALMEAALEAGAEDVIVNDDGSVDVMTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++E+K++L GF+ +++ + M+ T A K+ +L++ L+ L DV+ VY+NA
Sbjct: 179 SYLEVKDALVAAGFEPDNAEVTMQAATMTELDAEGAEKMMRLIDRLEDLDDVQNVYSNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|344338368|ref|ZP_08769300.1| UPF0082 protein yeeN [Thiocapsa marina 5811]
gi|343801650|gb|EGV19592.1| UPF0082 protein yeeN [Thiocapsa marina 5811]
Length = 249
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D +RGK+ T+++RE+ VA G +P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKQRGKVWTKLIREVTVASREGGGDPGANPRLRLAMDKAFGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RAI++ ++ EN Y E+RYEGY G AI+VDC+T+NR RT + +R+ F+
Sbjct: 61 MPRDTVERAIKRGAGGMEGEN--YEEIRYEGYGPGGVAIMVDCMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + F P T ++ +++ ALE GAED L + D + ++T+P
Sbjct: 119 KHGGNLGTDGSVGYLFTKQGIISFQPGTDEDAVMEAALEAGAEDVLANDDGSLDVVTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L GF E + I T A KL +L++ L +L DV++VY NA
Sbjct: 179 AFASVKDALTQAGFDTEVAEISYNAATLAELDRETAEKLLRLVDVLDELDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IAD 241
>gi|288939914|ref|YP_003442154.1| hypothetical protein Alvin_0153 [Allochromatium vinosum DSM 180]
gi|288895286|gb|ADC61122.1| protein of unknown function DUF28 [Allochromatium vinosum DSM 180]
Length = 249
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D +RGK+ T+++RE+ VA G +P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKQRGKVWTKLIREVTVAAREGGGDPGANPRLRLAMDKAFGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RAI++ + EN Y E+RYEGY G AI+VDC+++NR RT S +R+ F
Sbjct: 61 MPRDTVERAIKRGAGGTEGEN--YEEIRYEGYGPGGVAIMVDCMSDNRNRTASEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P T ++ +++ ALE GAED +++ D + ++T+P
Sbjct: 119 KRGGNLGTDGSVSYLFTKQGIISFQPGTSEDAVMEAALEAGAEDVVVNDDGSLDVVTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +L GF E + I T + A KL KL+ L+ L DV+ VY NA
Sbjct: 179 DFAAVKEALTKAGFDTEVAEIGFNAATQVELDAETAEKLLKLVEMLEDLDDVQDVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|387130674|ref|YP_006293564.1| YebC/PmpR family DNA-binding regulatory protein [Methylophaga sp.
JAM7]
gi|386271963|gb|AFJ02877.1| DNA-binding regulatory protein, YebC/PmpR family [Methylophaga sp.
JAM7]
Length = 249
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 159/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ TR++RE+ VA G ++P +N +LR AI+KAL +N
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKLFTRLIREITVAARMGGSDPASNPRLRAAIDKALGSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA ++ + E + Y EVRYEGY NG AI+VDC+T+NR RTV+ +R++F
Sbjct: 61 MTKDVIERASKRGAGEL--EGVAYEEVRYEGYGPNGIAIMVDCMTDNRNRTVAEVRHVFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V FMF G + F + +++ ++++ALE GAED + + D I + T P
Sbjct: 119 KRGGNMGTDGCVAFMFNQKGIISFATDVEEDDIMEVALEAGAEDIVTNDDGSIDVFTPPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++L+ GF A+S+ + M P + + +A K L+ ++L DV++VY+NA
Sbjct: 179 DYAAVKDALDNAGFSAQSAEVTMHPDNTVSLELDDAQKAIALIEAFEELDDVQQVYSNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FSD 241
>gi|256823082|ref|YP_003147045.1| hypothetical protein Kkor_1865 [Kangiella koreensis DSM 16069]
gi|256796621|gb|ACV27277.1| protein of unknown function DUF28 [Kangiella koreensis DSM 16069]
Length = 247
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+I+REL VA G +P+ N +LR A++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKIIRELVVAAKEGGGDPNDNPRLRAAMDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I +AI++ N E NY E+ YEGY G AI+V+C+T+N+ RTV +R+ F
Sbjct: 61 MKKDTIEKAIERGTGNA--EGDNYEELTYEGYGPGGVAILVECMTDNKNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL GSV ++F+ GQ +F N ++ L++ ALE GAEDF+ D + T+P
Sbjct: 119 KHGGNLGTNGSVAYLFEKKGQFIFGDNVEEEALMEAALEAGAEDFVAHNDGSFELQTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F++IK +L GF+ E++ + M P T + K+ +L++ L++L D + VYTNA
Sbjct: 179 DFLDIKEALVKAGFEPENAEVSMLPSTQAELDVNDGAKVIRLVDRLEELDDTQNVYTNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|53804482|ref|YP_113684.1| hypothetical protein MCA1220 [Methylococcus capsulatus str. Bath]
gi|67462035|sp|Q609L3.1|Y1220_METCA RecName: Full=Probable transcriptional regulatory protein MCA1220
gi|53758243|gb|AAU92534.1| conserved hypothetical protein TIGR01033 [Methylococcus capsulatus
str. Bath]
Length = 248
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 161/241 (66%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G +P N +LR AI+KAL AN
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKLFTKLIREITVASRTGGPDPGNNPRLRTAIDKALVAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI+K + +N Y EVRYEGY G A++VDC+T+NR RTV+ +R+ F+
Sbjct: 61 MSKDTIERAIKKGSGAADGDN--YEEVRYEGYGPGGIAVLVDCLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F + ++ +++ AL+ GA+D ++++D + ++T+P
Sbjct: 119 KAGGNLGTDGSVAYLFSKTGVVSFSADLGEDRVMEPALDAGADDVVVNEDGSVDVLTAPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++++LE G ES+ + MR T++ +A K+ +LL L+ L DV+ VY+NA
Sbjct: 179 QFEAVRDALEAAGLTPESAEVTMRASTSVKLDKEDAEKMIRLLERLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|344342826|ref|ZP_08773696.1| UPF0082 protein yeeN [Marichromatium purpuratum 984]
gi|343805378|gb|EGV23274.1| UPF0082 protein yeeN [Marichromatium purpuratum 984]
Length = 249
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D +RGKI T+++RE+ VA G +P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKRRGKIWTKLIREVTVAARAGGGDPAANPRLRLAMDKAFGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RAI++ E NY E+RYEGY G A++VDC+++NR RT S +R+ F
Sbjct: 61 MPRDTVERAIKRGAGG--TEGDNYEEIRYEGYGPGGVAVMVDCMSDNRNRTASEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + F P + ++ +++ A+E GA+D + + D + +IT+P
Sbjct: 119 KHGGNLGTDGSVAYLFTKQGIISFQPGSDEDAVMEAAIEAGADDVVTNDDASLDVITAPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L GF E + + T+ A KL K+++ L+ L DV++VY NA
Sbjct: 179 AFSEVKDALIAAGFDTEVAEVTFNASTSAELDRDTAEKLLKMIDTLEDLDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|387125915|ref|YP_006294520.1| DNA-binding regulatory protein [Methylophaga sp. JAM1]
gi|386272977|gb|AFI82875.1| DNA-binding regulatory protein [Methylophaga sp. JAM1]
Length = 249
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 161/243 (66%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ TR++RE+ VA G ++P TN +LR AI+KAL +N
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKLFTRLIREITVAARMGGSDPATNPRLRAAIDKALGSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA ++ + E Y E+RYEGY NG AI+VDC+T+NR RTV+ +R++F+
Sbjct: 61 MTKDVIERASKRGAGEL--EGAAYEEIRYEGYGPNGIAIMVDCMTDNRNRTVAEVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +GSV ++F G + F + ++ ++++ALE GAED + + D + + TSP
Sbjct: 119 KRGGNMGTDGSVAYLFNQKGIISFGNDVTEDDVMEIALEAGAEDIVTNADGSVDVFTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++L+ G +A+S+ + M P T + + +A K ++ ++L DV++VY+NA
Sbjct: 179 DYSAVKDALDTAGLEAQSAEVTMHPDTTVSLELEDAQKAIAMIEAFEELDDVQQVYSNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FSD 241
>gi|339061779|ref|ZP_08648998.1| hypothetical protein imdm_2182 [gamma proteobacterium IMCC2047]
gi|330720193|gb|EGG98578.1| hypothetical protein imdm_2182 [gamma proteobacterium IMCC2047]
Length = 244
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 158/243 (65%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI TR +REL VA G +P+ N +LRLA+++A AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTRFIRELTVAARAGGGDPEDNPRLRLAVDRAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + RAI + + E N E+ YEGY G A++V+ +T+NR RTV+ +R+ F
Sbjct: 61 MPKDTMQRAIDRG---VGGEGENLEEITYEGYGQAGVAVLVETMTDNRNRTVAEVRHAFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F P ++ +++ ALE GA+D + + D I ++T+P+
Sbjct: 118 KFGGNLGTDGSVSYLFTKQGQITFEPGADEDAIMEAALEAGADDVVTNDDESIDVVTTPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K++LE G + ++ + M P T++ A K+ KL++ L++L DV+ V+ NA
Sbjct: 178 EFSNVKDALEAAGLEPVNAEVAMVPSTSVDLDVDTATKVMKLIDMLEELDDVQNVFHNAD 237
Query: 240 IFD 242
I D
Sbjct: 238 IPD 240
>gi|254490177|ref|ZP_05103368.1| conserved hypothetical protein TIGR01033 [Methylophaga thiooxidans
DMS010]
gi|224464663|gb|EEF80921.1| conserved hypothetical protein TIGR01033 [Methylophaga thiooxydans
DMS010]
Length = 249
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G ++P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKLFTKLIREITVAARMGGSDPASNPRLRAAIDKALGNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA ++ + E +NY E+RYEGY NG AI+VDC+T+N+ RTV+ +RN+F
Sbjct: 61 MTKDVIERATKRGAGEL--EGVNYEEIRYEGYGPNGTAIMVDCMTDNKNRTVAAVRNVFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ +G V F+F G + ++ T+++ ALE GAED + + D I + T+P
Sbjct: 119 KRGGNMGTDGCVAFLFNKKGIISLPAGLEEETVMEAALEAGAEDIVTNDDGSIDVFTTPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++L+ G +AESS + M P T + + +A K ++ ++L DV++VY+NA
Sbjct: 179 DYAAVKDALDEAGLEAESSQVTMHPDTTVSLEVDDAKKAIGMIEAFEELDDVQEVYSNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FSD 241
>gi|386829381|ref|ZP_10116488.1| DNA-binding regulatory protein, YebC/PmpR family [Beggiatoa alba
B18LD]
gi|386430265|gb|EIJ44093.1| DNA-binding regulatory protein, YebC/PmpR family [Beggiatoa alba
B18LD]
Length = 248
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKR K+ T+ +RE+ VA G +P+ N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRAKVFTKFIREITVAARMGGGDPNANPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI++ + EN Y EVRYEGY G A+IVDC+T+NR RTVS +R+ F+
Sbjct: 61 MPKDTIERAIKRGAGAAEGEN--YEEVRYEGYGAGGIAVIVDCMTDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV FMF+ G L + + ++ L++ ALE GA+D + ++D+ + IIT+PS
Sbjct: 119 KCGGNLGTDGSVAFMFEEIGLLTYPAGSDEDKLMEAALEAGAQDVVKNEDSSVDIITAPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K ++E ES+ I MR T+ A K+ KLL+ L+ L DV+KVY+NA
Sbjct: 179 DLHSVKTAMEKAKLAPESAEITMRAGTSTSVDLETAQKIVKLLDMLEDLDDVQKVYSNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FSD 241
>gi|24373979|ref|NP_718022.1| DNA-binding regulatory protein YebC [Shewanella oneidensis MR-1]
gi|33517027|sp|Q8EEF0.1|Y2432_SHEON RecName: Full=Probable transcriptional regulatory protein SO_2432
gi|24348430|gb|AAN55466.1| DNA-binding regulatory protein YebC [Shewanella oneidensis MR-1]
Length = 248
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL V A G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVSAREGGSDPDSNPRLRIAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTIERAIKRGAGELEGQQLETI--IYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T ++ L+D ALE GAED + D I + T P+
Sbjct: 119 KSGGNLGTDGSVAYLFTKRGVLSYAPGTDEDALMDAALEAGAEDVVSYDDGAIDVFTEPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ GF ++++ I M T A K +L++ L++ DV++VY NA
Sbjct: 179 AFYEVKDALDAAGFVSDNAEIAMIASTKAELDAETAEKFMRLIDTLEEHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|429212453|ref|ZP_19203618.1| Transcriptional regulatory protein PmpR [Pseudomonas sp. M1]
gi|428156935|gb|EKX03483.1| Transcriptional regulatory protein PmpR [Pseudomonas sp. M1]
Length = 248
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 154/241 (63%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G NP N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKQGGGNPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + N+ N E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61 MTRDTIDRAIARGAGS--NDADNMEELTYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF GQ+ F P ++ L++ ALE GA+D + + D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFDRKGQISFAPGVDEDALMEAALEAGADDVVTNDDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI + +L GFK E + I M P T A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 DFIAVNEALTAAGFKGEEAEISMIPSTTATLDLETAQKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|15596161|ref|NP_249655.1| hypothetical protein PA0964 [Pseudomonas aeruginosa PAO1]
gi|107100421|ref|ZP_01364339.1| hypothetical protein PaerPA_01001446 [Pseudomonas aeruginosa PACS2]
gi|116048889|ref|YP_792310.1| hypothetical protein PA14_51810 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893065|ref|YP_002441934.1| hypothetical protein PLES_43501 [Pseudomonas aeruginosa LESB58]
gi|254239312|ref|ZP_04932635.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254245247|ref|ZP_04938569.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296390677|ref|ZP_06880152.1| hypothetical protein PaerPAb_21088 [Pseudomonas aeruginosa PAb1]
gi|313105851|ref|ZP_07792114.1| hypothetical protein PA39016_000110148 [Pseudomonas aeruginosa
39016]
gi|355647602|ref|ZP_09055139.1| hypothetical protein HMPREF1030_04225 [Pseudomonas sp. 2_1_26]
gi|386060134|ref|YP_005976656.1| hypothetical protein PAM18_4073 [Pseudomonas aeruginosa M18]
gi|386064713|ref|YP_005980017.1| hypothetical protein NCGM2_1771 [Pseudomonas aeruginosa NCGM2.S1]
gi|392985558|ref|YP_006484145.1| hypothetical protein PADK2_20870 [Pseudomonas aeruginosa DK2]
gi|416865694|ref|ZP_11915784.1| hypothetical protein PA13_28107 [Pseudomonas aeruginosa 138244]
gi|416881687|ref|ZP_11921678.1| hypothetical protein PA15_26435 [Pseudomonas aeruginosa 152504]
gi|418583571|ref|ZP_13147640.1| hypothetical protein O1O_02905 [Pseudomonas aeruginosa MPAO1/P1]
gi|418588936|ref|ZP_13152866.1| hypothetical protein O1Q_00080 [Pseudomonas aeruginosa MPAO1/P2]
gi|419753855|ref|ZP_14280253.1| hypothetical protein CF510_12782 [Pseudomonas aeruginosa
PADK2_CF510]
gi|420141110|ref|ZP_14648820.1| hypothetical protein PACIG1_4335 [Pseudomonas aeruginosa CIG1]
gi|421155537|ref|ZP_15615013.1| hypothetical protein PABE171_4374 [Pseudomonas aeruginosa ATCC
14886]
gi|421162418|ref|ZP_15621264.1| hypothetical protein PABE173_4822 [Pseudomonas aeruginosa ATCC
25324]
gi|421169664|ref|ZP_15627673.1| hypothetical protein PABE177_4460 [Pseudomonas aeruginosa ATCC
700888]
gi|421176038|ref|ZP_15633707.1| hypothetical protein PACI27_4241 [Pseudomonas aeruginosa CI27]
gi|421182037|ref|ZP_15639523.1| hypothetical protein PAE2_3992 [Pseudomonas aeruginosa E2]
gi|421515588|ref|ZP_15962274.1| hypothetical protein A161_04930 [Pseudomonas aeruginosa PAO579]
gi|424940049|ref|ZP_18355812.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179]
gi|451987385|ref|ZP_21935543.1| hypothetical protein YebC [Pseudomonas aeruginosa 18A]
gi|12230973|sp|Q51423.2|PMPR_PSEAE RecName: Full=Transcriptional regulatory protein PmpR
gi|122257996|sp|Q02IC6.1|Y5181_PSEAB RecName: Full=Probable transcriptional regulatory protein
PA14_51810
gi|226706171|sp|B7UXW8.1|Y4350_PSEA8 RecName: Full=Probable transcriptional regulatory protein
PLES_43501
gi|9946871|gb|AAG04353.1|AE004530_6 pqsR-mediated PQS regulator, PmpR [Pseudomonas aeruginosa PAO1]
gi|115584110|gb|ABJ10125.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126171243|gb|EAZ56754.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126198625|gb|EAZ62688.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218773293|emb|CAW29105.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
gi|310878616|gb|EFQ37210.1| hypothetical protein PA39016_000110148 [Pseudomonas aeruginosa
39016]
gi|334834325|gb|EGM13298.1| hypothetical protein PA13_28107 [Pseudomonas aeruginosa 138244]
gi|334835638|gb|EGM14500.1| hypothetical protein PA15_26435 [Pseudomonas aeruginosa 152504]
gi|346056495|dbj|GAA16378.1| conserved hypothetical protein [Pseudomonas aeruginosa NCMG1179]
gi|347306440|gb|AEO76554.1| hypothetical protein PAM18_4073 [Pseudomonas aeruginosa M18]
gi|348033272|dbj|BAK88632.1| hypothetical protein NCGM2_1771 [Pseudomonas aeruginosa NCGM2.S1]
gi|354827796|gb|EHF11935.1| hypothetical protein HMPREF1030_04225 [Pseudomonas sp. 2_1_26]
gi|375047179|gb|EHS39728.1| hypothetical protein O1O_02905 [Pseudomonas aeruginosa MPAO1/P1]
gi|375052095|gb|EHS44554.1| hypothetical protein O1Q_00080 [Pseudomonas aeruginosa MPAO1/P2]
gi|384399794|gb|EIE46159.1| hypothetical protein CF510_12782 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321063|gb|AFM66443.1| hypothetical protein PADK2_20870 [Pseudomonas aeruginosa DK2]
gi|403246148|gb|EJY59894.1| hypothetical protein PACIG1_4335 [Pseudomonas aeruginosa CIG1]
gi|404349316|gb|EJZ75653.1| hypothetical protein A161_04930 [Pseudomonas aeruginosa PAO579]
gi|404520418|gb|EKA31091.1| hypothetical protein PABE171_4374 [Pseudomonas aeruginosa ATCC
14886]
gi|404525978|gb|EKA36219.1| hypothetical protein PABE177_4460 [Pseudomonas aeruginosa ATCC
700888]
gi|404531389|gb|EKA41344.1| hypothetical protein PACI27_4241 [Pseudomonas aeruginosa CI27]
gi|404534859|gb|EKA44580.1| hypothetical protein PABE173_4822 [Pseudomonas aeruginosa ATCC
25324]
gi|404543067|gb|EKA52372.1| hypothetical protein PAE2_3992 [Pseudomonas aeruginosa E2]
gi|451755003|emb|CCQ88066.1| hypothetical protein YebC [Pseudomonas aeruginosa 18A]
gi|453047991|gb|EME95704.1| hypothetical protein H123_00955 [Pseudomonas aeruginosa PA21_ST175]
Length = 248
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKLIRELTVAARQGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + N+ N +E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61 MTRDTIDRAIARGVGS--NDADNMVELSYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P + L+D ALE GA+D +++ D I + T+ +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGVDEEALMDAALEAGADDVVVNDDGSIDVFTTFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI + +L GFK + + + M P T A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 DFISVNEALAAAGFKGDEAEVTMIPSTTATLDLETAQKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|381152653|ref|ZP_09864522.1| DNA-binding regulatory protein, YebC/PmpR family [Methylomicrobium
album BG8]
gi|380884625|gb|EIC30502.1| DNA-binding regulatory protein, YebC/PmpR family [Methylomicrobium
album BG8]
Length = 249
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 157/242 (64%), Gaps = 5/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA+ G PD +N LR AI+KAL +
Sbjct: 1 MAGHSKWANIRHRKAGQDAKRGKIFTKLLREITVAVKSGG-PDAGSNPTLRTAIDKALGS 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I AI+K + E +NY EVRYEGY G A++V+C+T+NR RTVS++R+ F
Sbjct: 60 NMRRDTIDNAIKKASG--AQEGVNYEEVRYEGYGPGGTAVMVECLTDNRNRTVSDVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL +GSV ++F G L + + ++ L++ ALE GA D + + D I ++TSP
Sbjct: 118 TKAGGNLGTDGSVAYLFTKTGMLSYAEDADEDALMEAALEAGANDVVTNDDGSIDVMTSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++ +K +L GF +++ + M+ T +A K+ +L++ L+ L DV+ VY+NA
Sbjct: 178 EDYLAVKETLIAAGFTPDNAEVTMQASTQTELGPEDAEKMLRLIDRLEDLDDVQNVYSNA 237
Query: 239 LI 240
I
Sbjct: 238 DI 239
>gi|410666303|ref|YP_006918674.1| hypothetical protein M5M_19080 [Simiduia agarivorans SA1 = DSM
21679]
gi|409028660|gb|AFV00945.1| hypothetical protein M5M_19080 [Simiduia agarivorans SA1 = DSM
21679]
Length = 247
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 155/243 (63%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DAKRGKI T+I+REL VA G NPD N +LR A++KAL AN+
Sbjct: 1 MAGHSKWANIKHRKARQDAKRGKIFTKIIRELTVAAKGGPNPDDNPRLRAAVDKALGANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I +AI K + E NY E YEGY + G A++++C+T+NR RTV+ +RN F+K
Sbjct: 61 KRDTIDKAIAKGSGQTDGE--NYEECTYEGYGLAGVAVLIECMTDNRNRTVAEVRNAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL +GSV ++F G + F ++ L++ A+E GA D +++ D + + T+
Sbjct: 119 KGGNLGTDGSVAYLFTRTGVISF-AGADEDALMEAAIEAGAADVIVNDDGSVVVHTAFED 177
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNAL 239
F+ +K++L GFK + + + M P T+ D + A K+ L++ L+ L DV+ VYTNA
Sbjct: 178 FLSVKDALVAAGFKPDDAEVTMLPATHAEIDDKDTAEKVMALIDMLEDLDDVQNVYTNAE 237
Query: 240 IFD 242
D
Sbjct: 238 FSD 240
>gi|152985870|ref|YP_001349893.1| hypothetical protein PSPA7_4544 [Pseudomonas aeruginosa PA7]
gi|452879687|ref|ZP_21956764.1| hypothetical protein G039_25415 [Pseudomonas aeruginosa VRFPA01]
gi|167012955|sp|A6VA08.1|Y4544_PSEA7 RecName: Full=Probable transcriptional regulatory protein
PSPA7_4544
gi|150961028|gb|ABR83053.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
gi|452183790|gb|EME10808.1| hypothetical protein G039_25415 [Pseudomonas aeruginosa VRFPA01]
Length = 248
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKLIRELTVAAKQGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + N+ N +E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61 MTRDTIDRAIARGVGS--NDADNMVELSYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P + L+D ALE GA+D +++ D I + T+ +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGVDEEALMDAALEAGADDVVVNDDGSIDVFTTFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI + +L GFK + + + M P T A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 DFISVNEALTAAGFKGDEAEVTMIPSTTATLDLETAQKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|404398486|ref|ZP_10990070.1| hypothetical protein PfusU_01962 [Pseudomonas fuscovaginae UPB0736]
Length = 248
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 161/241 (66%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + N +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGNADTDDM--VELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P +++L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGIDEDSLMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE +GFKA + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEASGFKAGDAEIVMLPTTSAELDLDGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|113970237|ref|YP_734030.1| hypothetical protein Shewmr4_1899 [Shewanella sp. MR-4]
gi|114047574|ref|YP_738124.1| hypothetical protein Shewmr7_2079 [Shewanella sp. MR-7]
gi|117920399|ref|YP_869591.1| hypothetical protein Shewana3_1954 [Shewanella sp. ANA-3]
gi|113884921|gb|ABI38973.1| protein of unknown function DUF28 [Shewanella sp. MR-4]
gi|113889016|gb|ABI43067.1| protein of unknown function DUF28 [Shewanella sp. MR-7]
gi|117612731|gb|ABK48185.1| protein of unknown function DUF28 [Shewanella sp. ANA-3]
Length = 248
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL V A G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVSAREGGSDPDSNPRLRIAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTIERAIKRGAGELEGQQLETI--IYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T ++ L+D ALE GAED + D I + T P+
Sbjct: 119 KSGGNLGTDGSVAYLFTKRGVLSYAPGTDEDALMDAALEAGAEDVVSYDDGAIDVFTEPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K++L+ GF ++++ I M T A K +L++ L++ DV++VY NA
Sbjct: 179 EFYGVKDALDAAGFVSDNAEIAMIASTKAELDAETAEKFMRLIDTLEEHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|388543772|ref|ZP_10147062.1| hypothetical protein PMM47T1_05294 [Pseudomonas sp. M47T1]
gi|388278329|gb|EIK97901.1| hypothetical protein PMM47T1_05294 [Pseudomonas sp. M47T1]
Length = 248
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 159/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGTGAAATDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D +D + + TS +
Sbjct: 119 KSGGNLGTDGSVAYLFERKGQIAFAPGTDEDALMEAAMEADADDVTTHEDGSMDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+L+ GFK+ + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALDAAGFKSTDAEIVMVPGTSAELDLEGAEKVIKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|124266530|ref|YP_001020534.1| hypothetical protein Mpe_A1337 [Methylibium petroleiphilum PM1]
gi|166200368|sp|A2SFG0.1|Y1337_METPP RecName: Full=Probable transcriptional regulatory protein Mpe_A1337
gi|124259305|gb|ABM94299.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 241
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT--NIKLRLAIEKALDA 58
MAGHSKWANI+ +K D KRGKI TRI+RE+ VA G DT N +LRLAI+KA A
Sbjct: 1 MAGHSKWANIQHRKGRQDEKRGKIWTRIIREIVVAARAGGG-DTAMNPRLRLAIDKAKAA 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+P + I + K N E ++Y E+RYEGY + GAAII+D +T+NR+RTV+ +R+ F
Sbjct: 60 NMPADRIKYNVDKATGN--QEGVSYEEIRYEGYGIGGAAIIIDTMTDNRVRTVAEVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GGNL +GSV F FKHCGQ +F P + ++ ++++AL+ GAED + D D + ++ +P
Sbjct: 118 SKYGGNLGTDGSVSFQFKHCGQFMFAPGSSEDRIMEVALDAGAEDVVTDDDGTVEVLCAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +L+ G E + + MR + +A ++QKLL+ L+ L D + V+ NA
Sbjct: 178 PDFEAVQAALQAAGLVPELAEVTMRAENTVALDGEDAQRMQKLLDVLEDLDDTQAVFHNA 237
>gi|398851128|ref|ZP_10607818.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM80]
gi|398989493|ref|ZP_10692733.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM24]
gi|399013205|ref|ZP_10715516.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM16]
gi|398114329|gb|EJM04156.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM16]
gi|398147457|gb|EJM36163.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM24]
gi|398247238|gb|EJN32693.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM80]
Length = 248
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L + ALE A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADADDVVSHEDGSIDVFTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|1183839|dbj|BAA11816.1| unknown [Pseudomonas aeruginosa]
Length = 248
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK ++ DAK+GKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHREERQDAKKGKIFTKLIRELTVAARQGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + N+ N +E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61 MTRDTIDRAIARGVGS--NDADNMVELSYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P + L+D ALE GA+D +++ D I + T+ +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGVDEEALMDAALEAGADDVVVNDDGSIDVFTTFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI + +L GFK + + + M P T A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 DFISVNEALAAAGFKGDEAEVTMIPSTTATLDLETAQKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|398973752|ref|ZP_10684594.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM25]
gi|398142704|gb|EJM31597.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM25]
Length = 248
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L + ALE A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADADDVVSHEDGSIDVFTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALETAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|77460631|ref|YP_350138.1| hypothetical protein Pfl01_4410 [Pseudomonas fluorescens Pf0-1]
gi|398962764|ref|ZP_10679363.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM30]
gi|424924553|ref|ZP_18347914.1| hypothetical protein I1A_004028 [Pseudomonas fluorescens R124]
gi|119392002|sp|Q3K7V7.1|Y4410_PSEPF RecName: Full=Probable transcriptional regulatory protein
Pfl01_4410
gi|77384634|gb|ABA76147.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
gi|398150598|gb|EJM39184.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM30]
gi|404305713|gb|EJZ59675.1| hypothetical protein I1A_004028 [Pseudomonas fluorescens R124]
Length = 248
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L + ALE A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTEAALEADADDVVSHEDGSIDVFTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|170723162|ref|YP_001750850.1| hypothetical protein PputW619_4001 [Pseudomonas putida W619]
gi|169761165|gb|ACA74481.1| protein of unknown function DUF28 [Pseudomonas putida W619]
Length = 248
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALMEAAMEADADDVVANEDGSFEVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|121998989|ref|YP_001003776.1| hypothetical protein Hhal_2210 [Halorhodospira halophila SL1]
gi|166227683|sp|A1WZ62.1|Y2210_HALHL RecName: Full=Probable transcriptional regulatory protein Hhal_2210
gi|121590394|gb|ABM62974.1| protein of unknown function DUF28 [Halorhodospira halophila SL1]
Length = 247
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR K DAKR KI T+ +RE+ VA G +P+ N +LRLA+++A N
Sbjct: 1 MAGHSKWANIKRHKWAQDAKRSKIFTKHIREITVAARLGGPDPEMNARLRLALDRAFAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ AI+K + E Y E+RYEGY G+AI+VDC+T+NR RTVS +R+ F+
Sbjct: 61 LPKDRADAAIKKGAGLEEAEA--YEEIRYEGYGPGGSAIMVDCMTDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GG + + SV ++F+ G L+F P T + +L++ALE GA+D + + D + ++T+P
Sbjct: 119 KHGGKMGTDNSVAYLFQERGVLVFAPGTDSDQVLEVALEAGADDLVENDDGSLEVLTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ ++++L G + E + + RP + + A+ +L+ L+ L DV+ VYTNA
Sbjct: 179 AYRGVRDALTEAGLEPEQADVTQRPDLTVQIEGDNAVSTARLIERLEDLDDVQHVYTNA 237
>gi|419955361|ref|ZP_14471490.1| hypothetical protein YO5_10345 [Pseudomonas stutzeri TS44]
gi|387967831|gb|EIK52127.1| hypothetical protein YO5_10345 [Pseudomonas stutzeri TS44]
Length = 249
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + NE N E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGS--NEADNMTELTYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + I TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVSQEDGSVEIYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTQAGFKGDEAEVAMIPSITAPIADVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIAD 242
>gi|443469216|ref|ZP_21059397.1| Hypothetical protein YebC [Pseudomonas pseudoalcaligenes KF707]
gi|442898551|gb|ELS25226.1| Hypothetical protein YebC [Pseudomonas pseudoalcaligenes KF707]
Length = 249
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 158/244 (64%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA + G NP N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGNPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + N+ N +E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61 MTRDTIDRAIARGAGS--NDADNMVELSYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF GQ+ + P + L++ ALE GA+D + D+D + + T+ +
Sbjct: 119 KCGGNLGTDGSVAYMFDRKGQISYAPGVNEEALMEAALEAGADDVVADEDGSVEVYTTFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P + D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTAAGFKGDEAEVAMIPSISAPITDLETAQKVLKLIDMLEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIPD 242
>gi|292490333|ref|YP_003525772.1| hypothetical protein Nhal_0175 [Nitrosococcus halophilus Nc4]
gi|291578928|gb|ADE13385.1| protein of unknown function DUF28 [Nitrosococcus halophilus Nc4]
Length = 248
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G +P T+ +LR+AI+KAL AN
Sbjct: 1 MAGHSKWANIQYRKGAQDAKRGKLFTKLIREITVAARLEGGDPATSPRLRIAIDKALAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI++ ++ E + Y E+RYEGY +G A++VDC+T+NR RTV+ +R++F+
Sbjct: 61 MPKDNIERAIKRGTGDM--EGVAYEEIRYEGYGPHGVAVMVDCMTDNRNRTVAEVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + + + ++++A+E GAED + ++D I + T P
Sbjct: 119 KWGGNLGTDGSVAYLFSKKGIISYPKGSDEEAIMEVAIEAGAEDVVTNEDGSIDVFTEPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F +K +LE K + + T + + + K+ L L+ L DV++VY+NA
Sbjct: 179 EFSAVKKALEEADLKPAQADVTQHASTIVSLELEDVKKMLTFLETLEDLDDVQQVYSNA 237
>gi|409394615|ref|ZP_11245777.1| hypothetical protein C211_04823 [Pseudomonas sp. Chol1]
gi|409120669|gb|EKM97010.1| hypothetical protein C211_04823 [Pseudomonas sp. Chol1]
Length = 249
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + NE N E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGS--NEADNMTELTYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + I TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVSQEDGSVEIYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLAVNEALTQAGFKGDEAEVAMIPSITAPIADVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIAD 242
>gi|415908597|ref|ZP_11553021.1| DUF28 multi-domain protein, partial [Herbaspirillum frisingense
GSF30]
gi|407762741|gb|EKF71531.1| DUF28 multi-domain protein, partial [Herbaspirillum frisingense
GSF30]
Length = 184
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 137/184 (74%), Gaps = 2/184 (1%)
Query: 57 DANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRN 116
DAN+PK+N+ RAIQ+ + + +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+
Sbjct: 1 DANMPKDNVTRAIQRGTGAL--DGVNYEEVRYEGYGINGAAIIVDCMTDNRVRTVAEVRH 58
Query: 117 IFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
F+K GGN+ EGSV F+FKHCGQL++ P T +N +++ ALE GAED + D++ I ++T
Sbjct: 59 AFSKFGGNMGTEGSVAFLFKHCGQLMYAPGTDENAIMEAALEAGAEDVVTDEEGGIEVLT 118
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P+ F +K ++E GFKAE + I M+P T VF + +++QKLL+ L+ L D +++YT
Sbjct: 119 APNDFAAVKAAMEAAGFKAEVAEITMKPATETVFAGEDGVRMQKLLDALENLDDTQELYT 178
Query: 237 NALI 240
NA+I
Sbjct: 179 NAVI 182
>gi|406914721|gb|EKD53872.1| hypothetical protein ACD_60C00143G0014 [uncultured bacterium]
Length = 250
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA +GK+ T+++RE+ V+ G + DTN +LR A++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAKQDAVKGKLYTKLIREITVSARLGGKDADTNPRLRAALDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ ++ ++ EVRYEGY +G AI++DC+TNNR RTV+ +R+ F
Sbjct: 61 MSKDVIDRAIKRGAGGLEGSDVE--EVRYEGYGPSGVAIMLDCMTNNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F P + +++LALE AED +++ D I ++T P
Sbjct: 119 KYGGNLGTDGSVSYLFNKRGQITFAPGADEERVMELALEYHAEDVIVNDDRSIEVMTLPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVYTNA 238
F++ KN+ G++ S+ + M TN+ D EA+ KL +++ L++L DV++VY+NA
Sbjct: 179 DFLKTKNAFIAAGYQPVSADVSMIAETNVPITDREAVEKLFNMIDALEELDDVQEVYSNA 238
>gi|359781355|ref|ZP_09284579.1| hypothetical protein PPL19_09867 [Pseudomonas psychrotolerans L19]
gi|359370419|gb|EHK70986.1| hypothetical protein PPL19_09867 [Pseudomonas psychrotolerans L19]
Length = 248
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+I+REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKIIRELTVAARQGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + EN+ E+ YEGY+ +G AIIV+ +T+NR RT + +R+ FN
Sbjct: 61 MTRDTIDRAIARGVGAGEGENVE--ELTYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ + P ++ L++ ALE GA+D + + D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISYAPGLDEDALMEAALEAGADDVVANDDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
FI + +L G+KA+ + + M P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 DFIAVNEALTAAGYKADEAEVTMIPSTSATLDLETAQKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|333983198|ref|YP_004512408.1| hypothetical protein [Methylomonas methanica MC09]
gi|333807239|gb|AEF99908.1| UPF0082 protein yeeN [Methylomonas methanica MC09]
Length = 251
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF--GNNPDTNIKLRLAIEKALDA 58
MAGHSKWANIK +K DAKRGKI T+++RE+ VA G +P N LR AI+KAL A
Sbjct: 1 MAGHSKWANIKHRKGAQDAKRGKIFTKMIREITVAAKGAGGGDPSNNPSLRTAIDKALGA 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I I+K + + +NY EVRYEGY G A++V+C+T+NR RTV+++R+ F
Sbjct: 61 NMKRDTIDNTIKKAIGAL--DGVNYEEVRYEGYGPGGTAVMVNCLTDNRNRTVADVRHAF 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K+GGNL +GSV ++F+ G L F ++ +++ ALE GAED + + D + + T+P
Sbjct: 119 SKHGGNLGTDGSVAYLFRKVGILSFNNEVDEDAVMETALEAGAEDIVTNDDGSVDVFTTP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +K +L GF+ E++ + M T A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 EEYMNVKEALVAAGFEPENAEVTMHADTKTELDAEAAEKMMKLIDRLEDLDDVQDVYSNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 DISD 242
>gi|398873712|ref|ZP_10628964.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM74]
gi|398198557|gb|EJM85512.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM74]
Length = 248
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGTGAADTDDV--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAAGVDEDALMEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|386816224|ref|ZP_10103442.1| UPF0082 protein yeeN [Thiothrix nivea DSM 5205]
gi|386420800|gb|EIJ34635.1| UPF0082 protein yeeN [Thiothrix nivea DSM 5205]
Length = 249
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 154/245 (62%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG--NNPDTNIKLRLAIEKALDA 58
MAGHSKWANIK KK VD KRGKI T+++RE+ VA G ++P+ + +LRLA++KAL A
Sbjct: 1 MAGHSKWANIKHKKAAVDKKRGKIWTKLIREITVAAKEGKTSDPNAHPRLRLAVDKALGA 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+PK+ I +A ++ EN Y EVRYEGY G A+I++ +T+N RTV +R+
Sbjct: 61 NMPKDTIDKACKRGAGETGAEN--YSEVRYEGYGPGGIAVIIETMTDNVNRTVGEVRHAL 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL GSV F FK G + F P + L++ ALE GAED +D D IIT+P
Sbjct: 119 TKHGGNLGTNGSVAFQFKKIGVMNFAPGIDEEKLMEAALEAGAEDIQMDDDGSAEIITAP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
F +K++L GF + + MR N+ +GE A KL K+++ L+ L DV++V+TN
Sbjct: 179 EDFTAVKDALIAAGFTPDLDEVTMRA-DNLTEVEGEVAEKLLKMIDMLEDLDDVQEVFTN 237
Query: 238 ALIFD 242
A D
Sbjct: 238 ADFSD 242
>gi|422022674|ref|ZP_16369181.1| hypothetical protein OO7_08965 [Providencia sneebia DSM 19967]
gi|414095844|gb|EKT57504.1| hypothetical protein OO7_08965 [Providencia sneebia DSM 19967]
Length = 247
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PDTN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPDTNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDENDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGIDEDALMEAALEAGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ GF +E++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGFTSEAAEVSMIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|374702817|ref|ZP_09709687.1| hypothetical protein PseS9_05339 [Pseudomonas sp. S9]
Length = 249
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 156/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA + G P N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAASQGGGVPADNPRLRLAVDKAPTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + E + E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAIARGVGSTDGEKVE--ELSYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P + L++ ALE GA+D + + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGLDEEALMEAALEAGADDIVTNDDGSIDVFTAFV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
FI + +L G+KAE S +VM P T +D + A K+ KL++ L+ L DV+ V++NA
Sbjct: 179 DFIAVSEALTAAGYKAEESEVVMLPSTYSTLEDVDTAQKVLKLIDMLEDLDDVQNVHSNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIPD 242
>gi|336311402|ref|ZP_08566366.1| hypothetical protein SOHN41_01849 [Shewanella sp. HN-41]
gi|335865205|gb|EGM70255.1| hypothetical protein SOHN41_01849 [Shewanella sp. HN-41]
Length = 248
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRVAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--IYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + T ++ L+D ALE GAED + D I + T P+
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAAGTDEDALMDAALEAGAEDVVSYDDGAIDVFTDPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K++L+ GF +E++ I M T A K +L++ L++ DV++VY NA
Sbjct: 179 EFYAVKDALDGAGFTSENAEISMIASTKAELDAETAEKFMRLIDTLEEHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|398955930|ref|ZP_10676677.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM33]
gi|398150396|gb|EJM38989.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM33]
Length = 248
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAIARGTGAADTDDV--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAAGVDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|325274572|ref|ZP_08140630.1| hypothetical protein G1E_15175 [Pseudomonas sp. TJI-51]
gi|324100299|gb|EGB98087.1| hypothetical protein G1E_15175 [Pseudomonas sp. TJI-51]
Length = 248
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQL F P ++ L++ A+E A+D + ++D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQLSFAPGVDEDALMEAAMEADADDVVANEDGSFEVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ +LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRTALEEAGFKAADAEIVMQPTTSAELDHEGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|386286101|ref|ZP_10063303.1| hypothetical protein DOK_01899 [gamma proteobacterium BDW918]
gi|385280923|gb|EIF44833.1| hypothetical protein DOK_01899 [gamma proteobacterium BDW918]
Length = 248
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 153/241 (63%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ VA G P+ N +LR ++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAGQDAKRGKIFTKLIREIVVAAKAGGPTPEDNPRLRAVVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AI + N ++N Y EV YEGYS G A+ V+C+T+NR RTV+++R+ FN
Sbjct: 61 MKRDTIDKAIARGAGNADSDN--YDEVSYEGYSAGGVAVFVECMTDNRNRTVADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQL++ P ++ L++ ALE GAED + D ++
Sbjct: 119 KRGGNLGTDGSVAYLFSRKGQLVYAPGIDEDALMETALEAGAEDVVSHDDGSTEVLIEFG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ +K+++ GFK +++ VM N+ A L L++ L+ L DV++V+TNA
Sbjct: 179 DFMAVKDAMLAAGFKHDTADTVMLATLNVELDVAGAEALLGLVDMLEDLDDVQQVHTNAQ 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|398888020|ref|ZP_10642550.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM55]
gi|398912067|ref|ZP_10655815.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM49]
gi|426411197|ref|YP_007031296.1| hypothetical protein PputUW4_04299 [Pseudomonas sp. UW4]
gi|398182820|gb|EJM70322.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM49]
gi|398191564|gb|EJM78752.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM55]
gi|426269414|gb|AFY21491.1| hypothetical protein PputUW4_04299 [Pseudomonas sp. UW4]
Length = 248
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGTGAADTDDV--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAAGVDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|378952514|ref|YP_005210002.1| hypothetical protein PSF113_4618 [Pseudomonas fluorescens F113]
gi|359762528|gb|AEV64607.1| Hypothetical protein PSF113_4618 [Pseudomonas fluorescens F113]
Length = 248
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 155/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAIARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L + ALE A+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGLDEDALTEAALEADADDVVSHEDGSFDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEAAGFKPADAEIVMQPTTSAELDLDGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|146283146|ref|YP_001173299.1| hypothetical protein PST_2811 [Pseudomonas stutzeri A1501]
gi|339494910|ref|YP_004715203.1| hypothetical protein PSTAB_2833 [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|386021527|ref|YP_005939551.1| hypothetical protein PSTAA_2934 [Pseudomonas stutzeri DSM 4166]
gi|145571351|gb|ABP80457.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
gi|327481499|gb|AEA84809.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
gi|338802282|gb|AEJ06114.1| hypothetical protein PSTAB_2833 [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 249
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ + I RAI + + NE N E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSREVIDRAIARGAGS--NEADNMTELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + + TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVTQEDGSVEVYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTEAGFKGDEAEVAMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIAD 242
>gi|208779421|ref|ZP_03246767.1| conserved hypothetical protein [Francisella novicida FTG]
gi|208745221|gb|EDZ91519.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 248
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 148/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++TL+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDTLMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDAETAEKVMALIDKLEDLDDVQSVYSNA 237
>gi|197284984|ref|YP_002150856.1| hypothetical protein PMI1113 [Proteus mirabilis HI4320]
gi|227355388|ref|ZP_03839789.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
gi|425067942|ref|ZP_18471058.1| UPF0082 protein [Proteus mirabilis WGLW6]
gi|425072659|ref|ZP_18475765.1| UPF0082 protein [Proteus mirabilis WGLW4]
gi|226696215|sp|B4ETP5.1|Y1113_PROMH RecName: Full=Probable transcriptional regulatory protein PMI1113
gi|194682471|emb|CAR42403.1| conserved hypothetical protein [Proteus mirabilis HI4320]
gi|227164612|gb|EEI49483.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
gi|404596433|gb|EKA96953.1| UPF0082 protein [Proteus mirabilis WGLW4]
gi|404600680|gb|EKB01110.1| UPF0082 protein [Proteus mirabilis WGLW6]
Length = 251
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+N+ I YEGY G A++V+C+++NR RTVS++R+ F
Sbjct: 61 MTRDTLNRAIARGAGNDENDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGVDEDAVMEAALEAGAEDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++++ GF AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 AFGEVKDAMDAAGFVAESAEVSMIPSTKAELDIDTAPKLMRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|88800177|ref|ZP_01115745.1| hypothetical protein MED297_13807 [Reinekea blandensis MED297]
gi|88777023|gb|EAR08230.1| hypothetical protein MED297_13807 [Reinekea sp. MED297]
Length = 240
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 153/244 (62%), Gaps = 7/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+I+REL VA G NP+ N LR I+KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKIIRELVVAAKTGGPNPEDNPTLRSVIDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AI + N +N Y + YEGYS G A+ V C+++NR RTVS IR+ F
Sbjct: 61 MKRDTIDKAIARGAGNADGDN--YEAMTYEGYSAGGVAVYVKCLSDNRNRTVSEIRHCFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ LF+ ++N L+++ALE GAED + + D I T P
Sbjct: 119 KTGGNLGTDGSVAYLFSTAGQ-LFVEKAEENALMEVALEAGAEDVIANDDGSFEIRTQPD 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYTNA 238
F ++N+L G++ E + M P T G+A++ +Q+L++ L+ L DV+ VYTNA
Sbjct: 178 DFTSVRNALVEAGYEPEGE-VTMIPSTETDVS-GDAVETVQRLIDMLEDLDDVQAVYTNA 235
Query: 239 LIFD 242
D
Sbjct: 236 SFQD 239
>gi|431926644|ref|YP_007239678.1| YebC/PmpR family DNA-binding regulatory protein [Pseudomonas
stutzeri RCH2]
gi|431824931|gb|AGA86048.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
stutzeri RCH2]
Length = 249
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 156/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + + +N+ E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGSSEADNMT--ELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + I TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVSQEDGSVEIYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTQAGFKGDEAEVAMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EISD 242
>gi|70732091|ref|YP_261847.1| hypothetical protein PFL_4766 [Pseudomonas protegens Pf-5]
gi|119372135|sp|Q4K7D6.1|Y4766_PSEF5 RecName: Full=Probable transcriptional regulatory protein PFL_4766
gi|68346390|gb|AAY93996.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
protegens Pf-5]
Length = 248
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P++N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPNSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + ++++ +E+ YEGY NG A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAIARGTGAAGSDDV--VELTYEGYGPNGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQITFAEGVDEDALMEAAMEADADDVVSNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GF A + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYGVRNALEAAGFTAADAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|330811395|ref|YP_004355857.1| hypothetical protein PSEBR_a4443 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423698954|ref|ZP_17673444.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q8r1-96]
gi|327379503|gb|AEA70853.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996880|gb|EIK58210.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q8r1-96]
Length = 248
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 155/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L + ALE A+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGLDEDALTEAALEADADDVVSHEDGSFDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEAAGFKPADAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|156345602|ref|XP_001621415.1| hypothetical protein NEMVEDRAFT_v1g222013 [Nematostella vectensis]
gi|156207322|gb|EDO29315.1| predicted protein [Nematostella vectensis]
Length = 249
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+I+REL VA G P N +LRLA++KAL +N
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKIIRELTVAAKHGGPIPADNPRLRLAVDKALTSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + N NE N E+ YEGY++ G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MSRDVIDRAIARGAGN--NEADNVAELSYEGYALGGVAIIVEAMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF GQL F P ++ L++ ALE GA+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFDRKGQLSFAPGVSEDALMEAALEAGADDVEMAEDGSALVSTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F + +L GFKA+ + I M P + D E A K+ KL++ L+ L DV++VY NA
Sbjct: 179 DFHGVNEALSTAGFKADEAEIAMIPSISAPVADLETAQKVIKLIDMLEDLDDVQEVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIPD 242
>gi|398931387|ref|ZP_10665160.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM48]
gi|398163669|gb|EJM51822.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM48]
Length = 248
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGTGAADTDDV--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAQGMDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|422638216|ref|ZP_16701647.1| hypothetical protein PSYCIT7_04243 [Pseudomonas syringae Cit 7]
gi|440744137|ref|ZP_20923442.1| hypothetical protein A988_12051 [Pseudomonas syringae BRIP39023]
gi|330950611|gb|EGH50871.1| hypothetical protein PSYCIT7_04243 [Pseudomonas syringae Cit 7]
gi|440374399|gb|ELQ11131.1| hypothetical protein A988_12051 [Pseudomonas syringae BRIP39023]
Length = 248
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE TGFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEATGFKAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|335424116|ref|ZP_08553132.1| hypothetical protein SSPSH_15539 [Salinisphaera shabanensis E1L3A]
gi|335424456|ref|ZP_08553465.1| hypothetical protein SSPSH_17234 [Salinisphaera shabanensis E1L3A]
gi|334889141|gb|EGM27433.1| hypothetical protein SSPSH_17234 [Salinisphaera shabanensis E1L3A]
gi|334890404|gb|EGM28674.1| hypothetical protein SSPSH_15539 [Salinisphaera shabanensis E1L3A]
Length = 249
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 156/238 (65%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ T+I+RE+ VA G +P+ N +LRLA +KAL AN
Sbjct: 1 MAGHSKWANIQHRKNAQDKKRGKVFTKIIREITVAARMGGGDPNDNPRLRLAWDKALAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+++ + + +N Y E+RYEGY NG AI+VDC+T+N+ RTVS +R FN
Sbjct: 61 MPKDNIERAVKRGTGDGQADN--YEEIRYEGYGPNGVAIMVDCMTDNKNRTVSEVRYTFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
+NGGNL +GSV ++F G L + P+ +L AL+ GAED + +D ++T+P
Sbjct: 119 RNGGNLGADGSVAYLFDRKGVLTYGPDNDDEDVLAPALDAGAEDLVEYEDGSFDVLTAPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ +K ++E GF ++ + MRP T + + +A KLL+ L+ L DV+ VY+N
Sbjct: 179 DYNTVKAAVEAAGFAPDAGDVTMRPATTVELQGEDAQSCLKLLDALEDLDDVQNVYSN 236
>gi|192361730|ref|YP_001981524.1| hypothetical protein CJA_1028 [Cellvibrio japonicus Ueda107]
gi|190687895|gb|ACE85573.1| conserved hypothetical protein TIGR01033 [Cellvibrio japonicus
Ueda107]
Length = 247
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 151/240 (62%), Gaps = 2/240 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWAN+K +K DAKR K+ T+I+REL VA G NPD N +LR A+EKA N+
Sbjct: 1 MAGHSKWANMKHRKARQDAKRTKVFTKIIRELSVAAKNGANPDDNPRLRAAVEKAYLNNL 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
K+ + RAI + ++E+ Y E+ YEGY VNG A IV+C+T+NR RTV ++R+ F+K
Sbjct: 61 KKDVVERAIARGAGTAESES--YEELTYEGYGVNGVAFIVECMTDNRNRTVGDVRHAFDK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL GSV ++F GQ+ F P ++ L++ AL+ GA+D +I+ D ++T+
Sbjct: 119 RGGNLGTNGSVSYLFTRKGQISFEPGFNEDALMEAALDAGADDVVINSDGSADVMTAFED 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
F +K+++ GFK S+ M P + A K+ L++ L+ L DV+ VYTNA I
Sbjct: 179 FFAVKDAIIAAGFKPISADFAMVPSVTVSLDKDAAEKIISLIDALEDLDDVQNVYTNADI 238
>gi|387824732|ref|YP_005824203.1| hypothetical protein FN3523_1149 [Francisella cf. novicida 3523]
gi|332184198|gb|AEE26452.1| hypothetical protein FN3523_1149 [Francisella cf. novicida 3523]
Length = 248
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 148/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGVGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ +L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEALIEKGFNSENAEVTFDAETKAELDTETAEKVMALIDKLEDLDDVQSVYSNA 237
>gi|119774977|ref|YP_927717.1| hypothetical protein Sama_1842 [Shewanella amazonensis SB2B]
gi|119767477|gb|ABM00048.1| protein of unknown function DUF28 [Shewanella amazonensis SB2B]
Length = 248
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++REL V A G++ D N +LR AI+KAL AN
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+++ + + +N+ + YEGY G A++V+C+T+NR R V+ +RN FN
Sbjct: 61 MTRDTVERAVKRGSGELDGDNLETL--IYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + F T ++ +++ AL+ GA+D +I+ D + T+P
Sbjct: 119 KSGGNLGTDGSVAYLFTKRGVISFEAGTDEDAMMEAALDAGADDVIINDDGSADVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ TGF + ++ + M P T V A K +L+++L+ DV++VY NA
Sbjct: 179 DFGAVKDALDGTGFSSVNAEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|421616329|ref|ZP_16057343.1| hypothetical protein B597_05482 [Pseudomonas stutzeri KOS6]
gi|409781712|gb|EKN61289.1| hypothetical protein B597_05482 [Pseudomonas stutzeri KOS6]
Length = 249
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 156/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + + +N+ E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGSSEADNMT--ELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + + TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVTQEDGSVEVYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTGAGFKGDEAEVAMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIPD 242
>gi|423093857|ref|ZP_17081653.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q2-87]
gi|397887901|gb|EJL04384.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens Q2-87]
Length = 248
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 154/241 (63%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L + ALE A+D + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGLDEDALTEAALEADADDVIGHDDGSFEVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEAAGFKPADAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|134302041|ref|YP_001122010.1| hypothetical protein FTW_1073 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751853|ref|ZP_16188890.1| hypothetical protein B345_05370 [Francisella tularensis subsp.
tularensis AS_713]
gi|421753708|ref|ZP_16190697.1| hypothetical protein B344_05317 [Francisella tularensis subsp.
tularensis 831]
gi|421757434|ref|ZP_16194314.1| hypothetical protein B342_05378 [Francisella tularensis subsp.
tularensis 80700103]
gi|421759291|ref|ZP_16196124.1| hypothetical protein B341_05350 [Francisella tularensis subsp.
tularensis 70102010]
gi|424674611|ref|ZP_18111527.1| hypothetical protein B229_05325 [Francisella tularensis subsp.
tularensis 70001275]
gi|166228141|sp|A4IY88.1|Y1073_FRATW RecName: Full=Probable transcriptional regulatory protein FTW_1073
gi|134049818|gb|ABO46889.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086390|gb|EKM86509.1| hypothetical protein B344_05317 [Francisella tularensis subsp.
tularensis 831]
gi|409086580|gb|EKM86696.1| hypothetical protein B345_05370 [Francisella tularensis subsp.
tularensis AS_713]
gi|409091017|gb|EKM91022.1| hypothetical protein B341_05350 [Francisella tularensis subsp.
tularensis 70102010]
gi|409092522|gb|EKM92493.1| hypothetical protein B342_05378 [Francisella tularensis subsp.
tularensis 80700103]
gi|417434655|gb|EKT89597.1| hypothetical protein B229_05325 [Francisella tularensis subsp.
tularensis 70001275]
Length = 248
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHTFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDTETAEKVMALIDKLEDLDDVQSVYSNA 237
>gi|183598997|ref|ZP_02960490.1| hypothetical protein PROSTU_02442 [Providencia stuartii ATCC 25827]
gi|386745346|ref|YP_006218525.1| hypothetical protein S70_20245 [Providencia stuartii MRSN 2154]
gi|188021213|gb|EDU59253.1| DNA-binding regulatory protein, YebC/PmpR family [Providencia
stuartii ATCC 25827]
gi|384482039|gb|AFH95834.1| hypothetical protein S70_20245 [Providencia stuartii MRSN 2154]
Length = 247
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDENDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GAED D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGVDEDALMEAALEAGAEDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ GF +E++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGFTSEAAEVSMIPSTKAELDVETAPKLLRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|392421992|ref|YP_006458596.1| hypothetical protein A458_14720 [Pseudomonas stutzeri CCUG 29243]
gi|390984180|gb|AFM34173.1| hypothetical protein A458_14720 [Pseudomonas stutzeri CCUG 29243]
Length = 249
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + + +N+ E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGSSEADNMT--ELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + + TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVSQEDGSVEVYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
+F+ + +L GF+ + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 EFLSVNEALTEAGFRGDEAEVAMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EISD 242
>gi|237800216|ref|ZP_04588677.1| hypothetical protein POR16_15404 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023073|gb|EGI03130.1| hypothetical protein POR16_15404 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 248
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE +GFKA+ + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEASGFKADDAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|254372983|ref|ZP_04988472.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374434|ref|ZP_04989916.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|385792999|ref|YP_005825975.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151570710|gb|EDN36364.1| conserved hypothetical protein [Francisella novicida GA99-3549]
gi|151572154|gb|EDN37808.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|332678324|gb|AEE87453.1| hypothetical protein FNFX1_1067 [Francisella cf. novicida Fx1]
Length = 248
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDAETAEKVMALIDKLEDLDDVQSVYSNA 237
>gi|104783075|ref|YP_609573.1| hypothetical protein PSEEN4095 [Pseudomonas entomophila L48]
gi|95112062|emb|CAK16789.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 250
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 158/245 (64%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL +GSV ++F+ GQ+ F K ++ L++ ALE GA+D + ++D + TS
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAAELKVEEDALMEAALEAGADDVVNNEDGSFDVFTS 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
S F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+N
Sbjct: 179 FSSFYAVRNALEEGGFKASDAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVYSN 238
Query: 238 ALIFD 242
A I D
Sbjct: 239 AQISD 243
>gi|418292002|ref|ZP_12903953.1| hypothetical protein PstZobell_01922 [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379063436|gb|EHY76179.1| hypothetical protein PstZobell_01922 [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 249
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + + +N+ E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGSSEADNMT--ELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D +D + + TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVASQEDGSVEVYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L GFK + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTQAGFKGDEAEVAMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EISD 242
>gi|289674668|ref|ZP_06495558.1| hypothetical protein PsyrpsF_15489 [Pseudomonas syringae pv.
syringae FF5]
Length = 248
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + ++++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDDDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|374621787|ref|ZP_09694317.1| hypothetical protein ECTPHS_02154 [Ectothiorhodospira sp. PHS-1]
gi|373940918|gb|EHQ51463.1| hypothetical protein ECTPHS_02154 [Ectothiorhodospira sp. PHS-1]
Length = 248
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G ++P TN +LRLA++KALDAN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIKEITVAARMGGSDPATNPRLRLAVDKALDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA ++ + E +NY E+RYEGY G AI+VDC+T+NR RTVS +R+ F+
Sbjct: 61 MTKDTIERATKRGAGEL--EGVNYEELRYEGYGPGGVAIMVDCMTDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ G L + + + +++ ALE GA D L+ D I ++TSP
Sbjct: 119 KCGGNLGTDGSVAYLFEKTGILSYPAGSDEERVMEAALEAGAHDVLVSDDGAIDVLTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKL-QKLLNELKKLHDVKKVYTNA 238
+ +++++ G K E S + MR T D + K KLL+ L L DV+ VYTNA
Sbjct: 179 DYDAVRDAMTEVGLKPERSEVTMRAATGSSVDDTDTAKALLKLLDMLDDLDDVQNVYTNA 238
Query: 239 LIFD 242
D
Sbjct: 239 DFPD 242
>gi|302187159|ref|ZP_07263832.1| hypothetical protein Psyrps6_12440 [Pseudomonas syringae pv.
syringae 642]
Length = 248
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKAADAEIVMLPTTSAVLDLDTAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|261855146|ref|YP_003262429.1| hypothetical protein Hneap_0528 [Halothiobacillus neapolitanus c2]
gi|261835615|gb|ACX95382.1| protein of unknown function DUF28 [Halothiobacillus neapolitanus
c2]
Length = 246
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 154/242 (63%), Gaps = 4/242 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN--NPDTNIKLRLAIEKALDA 58
MAGHSKWANIK +K D KRGK+ T+I+RE+ A+ G +P N +LRLA +KAL +
Sbjct: 1 MAGHSKWANIKHRKARQDNKRGKVWTKIIREITAAVRVGKSADPSVNPRLRLAWDKALSS 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ K+ + RA ++ E+ Y E+ YEGY G A++V C+T+N RTVS++R+ F
Sbjct: 61 NMSKDTVERAAKRGVGAGDGEH--YEEMLYEGYGPGGVAVLVYCMTDNHNRTVSDVRHAF 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL +GSV ++F G L + P ++ L++ AL+ GA+D + +D + +IT+P
Sbjct: 119 TKFGGNLGTDGSVGYLFNKQGVLYYPPGVDEDALMEAALDAGAQDVQVGEDGAVEVITTP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++ IK++L++ GF E S + MR + +A+KL K+++ L+ L DV++V+ NA
Sbjct: 179 EDYVSIKDALKVAGFSPEESELAMRAAVTAPVEGDQAVKLVKMIDMLEDLDDVQEVFHNA 238
Query: 239 LI 240
I
Sbjct: 239 DI 240
>gi|56707777|ref|YP_169673.1| hypothetical protein FTT_0655 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670248|ref|YP_666805.1| hypothetical protein FTF0655 [Francisella tularensis subsp.
tularensis FSC198]
gi|254370276|ref|ZP_04986281.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874589|ref|ZP_05247299.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717027|ref|YP_005305363.1| hypothetical protein FTU_0699 [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725631|ref|YP_005317817.1| hypothetical protein FTV_0615 [Francisella tularensis subsp.
tularensis TI0902]
gi|385794414|ref|YP_005830820.1| hypothetical protein NE061598_03750 [Francisella tularensis subsp.
tularensis NE061598]
gi|421755284|ref|ZP_16192234.1| hypothetical protein B343_03733 [Francisella tularensis subsp.
tularensis 80700075]
gi|67461900|sp|Q5NH19.1|Y655_FRATT RecName: Full=Probable transcriptional regulatory protein FTT_0655
gi|118574389|sp|Q14IH1.1|Y655_FRAT1 RecName: Full=Probable transcriptional regulatory protein FTF0655
gi|54113927|gb|AAV29597.1| NT02FT1046 [synthetic construct]
gi|56604269|emb|CAG45288.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320581|emb|CAL08671.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568519|gb|EDN34173.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254840588|gb|EET19024.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158949|gb|ADA78340.1| hypothetical protein NE061598_03750 [Francisella tularensis subsp.
tularensis NE061598]
gi|377827080|gb|AFB80328.1| hypothetical protein FTV_0615 [Francisella tularensis subsp.
tularensis TI0902]
gi|377828704|gb|AFB78783.1| hypothetical protein FTU_0699 [Francisella tularensis subsp.
tularensis TIGB03]
gi|409088619|gb|EKM88683.1| hypothetical protein B343_03733 [Francisella tularensis subsp.
tularensis 80700075]
Length = 248
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDTETAEKVMALIDKLEDLDDVQNVYSNA 237
>gi|254262089|ref|ZP_04953143.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1710a]
gi|254220778|gb|EET10162.1| conserved hypothetical protein TIGR01033 [Burkholderia pseudomallei
1710a]
Length = 209
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 139/202 (68%), Gaps = 2/202 (0%)
Query: 39 GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAI 98
G + ++N +LRLA++KA DAN+PK+N+ RAI + + NY E+RYEGY + GAAI
Sbjct: 7 GGDVNSNPRLRLAVDKAADANMPKDNVKRAIDRGVGGA--DGANYEEIRYEGYGIGGAAI 64
Query: 99 IVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALE 158
IVD +T+NR RTV+ +R+ F+K GGN+ +GSV FMF H GQ LF P T ++ L++ ALE
Sbjct: 65 IVDTLTDNRTRTVAEVRHAFSKFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDALMEAALE 124
Query: 159 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKL 218
GA D + D I ++ +F ++K++LE GFKAE + + M+P + F +A+K+
Sbjct: 125 AGANDVNTNDDGSIEVLCDWQEFSKVKDALEAAGFKAELAEVTMKPQNEVDFTGEDAVKM 184
Query: 219 QKLLNELKKLHDVKKVYTNALI 240
QKLL+ L+ L DV++VYTNA++
Sbjct: 185 QKLLDALENLDDVQEVYTNAVV 206
>gi|118497619|ref|YP_898669.1| hypothetical protein FTN_1028 [Francisella novicida U112]
gi|195536320|ref|ZP_03079327.1| conserved hypothetical protein [Francisella novicida FTE]
gi|166228361|sp|A0Q6Q0.1|Y1028_FRATN RecName: Full=Probable transcriptional regulatory protein FTN_1028
gi|118423525|gb|ABK89915.1| conserved protein of unknown function [Francisella novicida U112]
gi|194372797|gb|EDX27508.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 248
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPY 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDAETAEKVMALIDKLEDLDDVQSVYSNA 237
>gi|407804370|ref|ZP_11151194.1| hypothetical protein S7S_03430 [Alcanivorax sp. W11-5]
gi|407021663|gb|EKE33427.1| hypothetical protein S7S_03430 [Alcanivorax sp. W11-5]
Length = 246
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 156/239 (65%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++RE+ VA G P+ N +LR ++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDARRGKIFTKLIREITVAARLGGPEPNDNPRLRAVVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI++ + ++ + E+ YEGY G A++V+ +T+N RTVS++R+ F
Sbjct: 61 MTRDTIDRAIKRGIGS--DDGASMDEISYEGYGPGGVAVLVETMTDNVNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL GSV ++F G++LF P T ++ L++ ALE GAED +D D +T+IT+
Sbjct: 119 KHGGNLGTSGSVAYLFTKRGEILFEPGTDEDALMEAALEAGAEDVQVDDDGSMTVITTAD 178
Query: 180 K-FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F ++ ++L+ GF+ ++ + M P T+ A K+ K+++ L+ L DV+ VYTN
Sbjct: 179 RAFGDVVDALKAAGFEPANAEVTMHPATDAEVDGDTAEKVMKMIDHLEDLDDVQNVYTN 237
>gi|62257419|gb|AAX77715.1| unknown protein [synthetic construct]
Length = 283
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 27 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 86
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 87 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 144
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 145 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 204
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 205 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDTETAEKVMALIDKLEDLDDVQNVYSNA 263
>gi|66044655|ref|YP_234496.1| hypothetical protein Psyr_1407 [Pseudomonas syringae pv. syringae
B728a]
gi|422628242|ref|ZP_16693451.1| hypothetical protein PSYPI_00070 [Pseudomonas syringae pv. pisi
str. 1704B]
gi|422664911|ref|ZP_16724784.1| hypothetical protein PSYAP_01503 [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|422671153|ref|ZP_16730519.1| hypothetical protein PSYAR_00165 [Pseudomonas syringae pv. aceris
str. M302273]
gi|443644940|ref|ZP_21128790.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
syringae pv. syringae B64]
gi|75502955|sp|Q4ZWL4.1|Y1407_PSEU2 RecName: Full=Probable transcriptional regulatory protein Psyr_1407
gi|63255362|gb|AAY36458.1| Protein of unknown function DUF28 [Pseudomonas syringae pv.
syringae B728a]
gi|330936723|gb|EGH40908.1| hypothetical protein PSYPI_00070 [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330968893|gb|EGH68959.1| hypothetical protein PSYAR_00165 [Pseudomonas syringae pv. aceris
str. M302273]
gi|330975330|gb|EGH75396.1| hypothetical protein PSYAP_01503 [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|443284957|gb|ELS43962.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
syringae pv. syringae B64]
Length = 248
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|410089232|ref|ZP_11285858.1| hypothetical protein AAI_01357 [Pseudomonas viridiflava UASWS0038]
gi|409763519|gb|EKN48479.1| hypothetical protein AAI_01357 [Pseudomonas viridiflava UASWS0038]
Length = 248
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKASDAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|289626494|ref|ZP_06459448.1| hypothetical protein PsyrpaN_15357 [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289650940|ref|ZP_06482283.1| hypothetical protein Psyrpa2_24852 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422583783|ref|ZP_16658903.1| hypothetical protein PSYAE_15427 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868610|gb|EGH03319.1| hypothetical protein PSYAE_15427 [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 248
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKASDAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|422616542|ref|ZP_16685248.1| hypothetical protein PSYJA_04844 [Pseudomonas syringae pv. japonica
str. M301072]
gi|424066598|ref|ZP_17804062.1| hypothetical protein Pav013_1387 [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|424071253|ref|ZP_17808679.1| hypothetical protein Pav037_1367 [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|440720478|ref|ZP_20900896.1| hypothetical protein A979_06737 [Pseudomonas syringae BRIP34876]
gi|440726607|ref|ZP_20906859.1| hypothetical protein A987_11139 [Pseudomonas syringae BRIP34881]
gi|330896126|gb|EGH28347.1| hypothetical protein PSYJA_04844 [Pseudomonas syringae pv. japonica
str. M301072]
gi|407999186|gb|EKG39573.1| hypothetical protein Pav037_1367 [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|408002197|gb|EKG42460.1| hypothetical protein Pav013_1387 [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|440365837|gb|ELQ02925.1| hypothetical protein A987_11139 [Pseudomonas syringae BRIP34881]
gi|440366003|gb|ELQ03090.1| hypothetical protein A979_06737 [Pseudomonas syringae BRIP34876]
Length = 248
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G A++V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAVMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|399519738|ref|ZP_10760529.1| hypothetical protein BN5_00980 [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112135|emb|CCH37088.1| hypothetical protein BN5_00980 [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 249
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 153/244 (62%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL N
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGPIPADNPRLRLAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + N NE N +E YEGY+ +G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MSRDVIDRAIARGAGN--NEADNVVEFSYEGYAPSGVAIIVEVMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P ++ L++ ALE GA+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGVDEDALMEAALEAGADDVEMGEDGSALVWTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
+F + +L GFK E + I M P N D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 179 EFHAVNEALSAAGFKGEEAEIAMIPSINAPIADLETAQKVFKLIDMLEDLDDVQNVYHNA 238
Query: 239 LIFD 242
+ D
Sbjct: 239 EVAD 242
>gi|421502633|ref|ZP_15949586.1| hypothetical protein A471_05090 [Pseudomonas mendocina DLHK]
gi|400346617|gb|EJO94974.1| hypothetical protein A471_05090 [Pseudomonas mendocina DLHK]
Length = 249
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 153/244 (62%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL N
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGPVPADNPRLRLAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ + I RAI + N NE N IE YEGY+ +G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MSREVIDRAIARGAGN--NEADNVIEFSYEGYAPSGVAIIVEVMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P ++ L++ ALE GA+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGVDEDALMEAALEAGADDVEVGEDGSALVSTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
+F + +L GFKAE + I M P + D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 179 EFHAVNEALGAAGFKAEEAEIAMIPSISAPIADLETAQKVFKLIDMLEDLDDVQNVYHNA 238
Query: 239 LIFD 242
+ D
Sbjct: 239 EVAD 242
>gi|226329881|ref|ZP_03805399.1| hypothetical protein PROPEN_03794 [Proteus penneri ATCC 35198]
gi|225200676|gb|EEG83030.1| DNA-binding regulatory protein, YebC/PmpR family [Proteus penneri
ATCC 35198]
Length = 251
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+N+ I YEGY G A++V+C+++NR RTVS++R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDENDNMETI--IYEGYGPAGTAVMVECLSDNRNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGVDEDAVMEAALEAGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++++ GF AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 SFGEVKDAMDAAGFVAESAEVSMIPSTKAELDIETAPKLMRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|298157269|gb|EFH98353.1| Concerved hypothetical protein yebC [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 248
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKASDAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|163785080|ref|ZP_02179796.1| hypothetical protein HG1285_07991 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879653|gb|EDP73441.1| hypothetical protein HG1285_07991 [Hydrogenivirga sp. 128-5-R1-1]
Length = 250
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 154/241 (63%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+ KK +DAKRG+I T+++RE+ +A G +P+ N +LR+AIEKA + N
Sbjct: 1 MAGHSKWHNIRHKKAKMDAKRGQIFTKLIREITIAARQGGGDPEFNPRLRIAIEKAKEHN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + E +NY E+ YEGY G A+IV+C+T+NR RT IR++F+
Sbjct: 61 MPAENIERAIKRGTGEL--EGVNYEEITYEGYGPEGVAVIVECVTDNRNRTTGEIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP--NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V F+F+ G ++ +P N + + + A+E GAED + D +N I T+
Sbjct: 119 KHGGNLGSSGCVSFLFEDKG-VILVPKENISEEEIFEKAIEAGAEDVITDDENYYEIRTA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
P +K +LE G E + + P T + KD E A KL KLL+ L++ DV+KVY+
Sbjct: 178 PEDLYSVKEALEKEGVSIEKAELTKIPTTTVEIKDSETAEKLMKLLDALEEQDDVQKVYS 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|71736092|ref|YP_275915.1| hypothetical protein PSPPH_3775 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487012|ref|ZP_05641053.1| hypothetical protein PsyrptA_27305 [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|416018004|ref|ZP_11565005.1| hypothetical protein PsgB076_18867 [Pseudomonas syringae pv.
glycinea str. B076]
gi|416025791|ref|ZP_11569439.1| hypothetical protein PsgRace4_12793 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422404621|ref|ZP_16481672.1| hypothetical protein Pgy4_11912 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422598693|ref|ZP_16672950.1| hypothetical protein PLA107_28358 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|119391982|sp|Q48FC2.1|Y3775_PSE14 RecName: Full=Probable transcriptional regulatory protein
PSPPH_3775
gi|71556645|gb|AAZ35856.1| conserved hypothetical protein TIGR01033 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320323054|gb|EFW79143.1| hypothetical protein PsgB076_18867 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329674|gb|EFW85663.1| hypothetical protein PsgRace4_12793 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330877981|gb|EGH12130.1| hypothetical protein Pgy4_11912 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330988967|gb|EGH87070.1| hypothetical protein PLA107_28358 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 248
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDALIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKASDAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|226945721|ref|YP_002800794.1| hypothetical protein Avin_36720 [Azotobacter vinelandii DJ]
gi|226720648|gb|ACO79819.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 249
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA + G NP N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAAKHGGGNPADNPRLRLAMDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + +E N E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61 MTRDTIDRAIARGAGT--SEADNMAELSYEGYAPSGVAIIVEALTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF GQ+ F P ++ L++ ALE GA+D + + D + + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFDRKGQISFAPGVNEDALMEAALEAGADDVVGNDDGSVDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F + +L GFK + + + M P D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 179 DFHTVNEALVAAGFKGDEAEVAMIPSITAPIADLETAQKVMKLIDMLEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EIPD 242
>gi|213969183|ref|ZP_03397322.1| hypothetical protein PSPTOT1_3331 [Pseudomonas syringae pv. tomato
T1]
gi|301384822|ref|ZP_07233240.1| hypothetical protein PsyrptM_19399 [Pseudomonas syringae pv. tomato
Max13]
gi|302063524|ref|ZP_07255065.1| hypothetical protein PsyrptK_26373 [Pseudomonas syringae pv. tomato
K40]
gi|302130612|ref|ZP_07256602.1| hypothetical protein PsyrptN_04412 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422297548|ref|ZP_16385183.1| hypothetical protein Pav631_1541 [Pseudomonas avellanae BPIC 631]
gi|422586953|ref|ZP_16661624.1| hypothetical protein PSYMP_00684 [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422651747|ref|ZP_16714539.1| hypothetical protein PSYAC_09232 [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|422657826|ref|ZP_16720265.1| hypothetical protein PLA106_10459 [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|213926181|gb|EEB59737.1| hypothetical protein PSPTOT1_3331 [Pseudomonas syringae pv. tomato
T1]
gi|330872655|gb|EGH06804.1| hypothetical protein PSYMP_00684 [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330964822|gb|EGH65082.1| hypothetical protein PSYAC_09232 [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331016437|gb|EGH96493.1| hypothetical protein PLA106_10459 [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|407990998|gb|EKG32955.1| hypothetical protein Pav631_1541 [Pseudomonas avellanae BPIC 631]
Length = 248
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G A++V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAVMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|268589739|ref|ZP_06123960.1| protein YebC [Providencia rettgeri DSM 1131]
gi|422008569|ref|ZP_16355553.1| hypothetical protein OOC_10766 [Providencia rettgeri Dmel1]
gi|291314891|gb|EFE55344.1| protein YebC [Providencia rettgeri DSM 1131]
gi|414095042|gb|EKT56705.1| hypothetical protein OOC_10766 [Providencia rettgeri Dmel1]
Length = 247
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDNDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGVDEDAIMEAALEAGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ GF +E++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGFTSEAAEVSMIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|187931872|ref|YP_001891857.1| hypothetical protein FTM_1203 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|226696271|sp|B2SH70.1|Y1203_FRATM RecName: Full=Probable transcriptional regulatory protein FTM_1203
gi|187712781|gb|ACD31078.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 248
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 146/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAVVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE G ED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGVEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDTETAEKVMALIDKLEDLDDVQSVYSNA 237
>gi|290475275|ref|YP_003468163.1| hypothetical protein XBJ1_2264 [Xenorhabdus bovienii SS-2004]
gi|289174596|emb|CBJ81390.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
Length = 247
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+ I YEGY G A++V+C+++NR RTVS++R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDADNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDAVMEAALEAGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ GFKAES+ + M P TN A KL +L++ L+ DV++VY N
Sbjct: 179 SFGDVKDALDAAGFKAESAEVSMIPSTNAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|83647605|ref|YP_436040.1| hypothetical protein HCH_04926 [Hahella chejuensis KCTC 2396]
gi|119372143|sp|Q2SCK9.1|Y4926_HAHCH RecName: Full=Probable transcriptional regulatory protein HCH_04926
gi|83635648|gb|ABC31615.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 156/244 (63%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DAKRGKI T+++RE+ VA G P+ N +LR I+KAL N+
Sbjct: 1 MAGHSKWANIKHRKASQDAKRGKIFTKLIREITVAAKNGALPEDNPRLRAVIDKALTVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
K+ I +AIQ+ ++ N+ E+ YEGY G A+ V+ +T+NR RTV+ +R+ F+K
Sbjct: 61 KKDTIEKAIQRGAGG--GDDSNFDELTYEGYGPGGVAVYVEVMTDNRNRTVAEVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
+GGNL +GSV ++F G +LF P+ ++ +++ ALE GA+D + + D + + TS
Sbjct: 119 HGGNLGTDGSVAYLFSKTGVILFAPDVDEDAVMEAALEAGAQDVIANDDGSVEVQTSAED 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYT--NIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F+ +K++L G ES+ + M P T + ++GE K+ KL+ L+ L DV+ VY+NA
Sbjct: 179 FMAVKDALMAAGLTPESADVSMVPATMAPLDVENGE--KVMKLIEMLEDLDDVQNVYSNA 236
Query: 239 LIFD 242
I D
Sbjct: 237 DIPD 240
>gi|422608620|ref|ZP_16680596.1| hypothetical protein PSYMO_26974 [Pseudomonas syringae pv. mori
str. 301020]
gi|330892238|gb|EGH24899.1| hypothetical protein PSYMO_26974 [Pseudomonas syringae pv. mori
str. 301020]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGGSDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTPAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDALIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKASDAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|409422850|ref|ZP_11259930.1| hypothetical protein PsHYS_12189 [Pseudomonas sp. HYS]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + + +N+ E+ YEGY G AI+V+ +T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGTAEADNVE--ELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAAGVDEDALMEAAMEADADDVVSNDDGSFDVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDLDGAQKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|397686574|ref|YP_006523893.1| hypothetical protein PSJM300_07305 [Pseudomonas stutzeri DSM 10701]
gi|395808130|gb|AFN77535.1| hypothetical protein PSJM300_07305 [Pseudomonas stutzeri DSM 10701]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DAKRGKI T+I+REL VA G P N +LRLA++KAL AN+
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKIIRELTVAAKSGPVPADNPRLRLAVDKALTANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I RAI + N+ N E+ YEGY+ +G AIIV+ +T+NR RT + +R+ F+K
Sbjct: 61 SRDVIDRAIARGAGT--NDADNMTELTYEGYAPSGVAIIVEAMTDNRNRTAAEVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
+GGNL +GSV +MF GQ+ F ++ L++ ALE GA+D + D + TS +
Sbjct: 119 HGGNLGTDGSVAYMFDRKGQISFAAGVDEDALMEAALEAGADDVEMGDDGSALVSTSFAD 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNAL 239
F + +L GFK E + I M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 FHAVNEALSTAGFKGEEADIAMIPSIAAPLADLETAQKVLRLIDALEDLDDVQNVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|406904303|gb|EKD46131.1| hypothetical protein ACD_69C00002G0002 [uncultured bacterium]
Length = 243
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 154/238 (64%), Gaps = 2/238 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DA +GKI T+++RE+ VA + TN KLRLAI+KAL N+
Sbjct: 1 MAGHSKWANIKHRKTKQDAVKGKIFTKLIREITVAAKQSQDLSTNSKLRLAIDKALAQNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I RAI++ + N ++ E+ YEGY NG AI+V C+T+NR RT ++R+IF K
Sbjct: 61 TRDTIDRAIKRGSGEDANNHME--EIFYEGYGTNGVAILVHCLTDNRNRTAGDVRHIFTK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
+GGNL GSV ++FK G + F P + ++ ++ +AL+ GAED + D + ++T+P
Sbjct: 119 HGGNLGTSGSVSYLFKQSGIICFPPGSNEDKIMQVALDAGAEDIISRDDASVEVLTAPEN 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +IK ++E +G A ++ I M + ++K+ +L++ L++L DV+ VY+NA
Sbjct: 179 FTKIKTAMEKSGLVAAAAEISMLASIQVPLDKEASVKVMELIDALEELDDVQNVYSNA 236
>gi|373949609|ref|ZP_09609570.1| UPF0082 protein yeeN [Shewanella baltica OS183]
gi|386324555|ref|YP_006020672.1| hypothetical protein [Shewanella baltica BA175]
gi|333818700|gb|AEG11366.1| UPF0082 protein yeeN [Shewanella baltica BA175]
gi|373886209|gb|EHQ15101.1| UPF0082 protein yeeN [Shewanella baltica OS183]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 153/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRVAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T ++ L++ ALE GAED + D I + T P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGTDEDALMEAALEAGAEDIVSYDDGAIDVFTDPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYMVKDALDKASFVADNAEIAMIASTKAELDLDTAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|153000826|ref|YP_001366507.1| hypothetical protein Shew185_2306 [Shewanella baltica OS185]
gi|151365444|gb|ABS08444.1| protein of unknown function DUF28 [Shewanella baltica OS185]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 153/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRVAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T ++ L++ ALE GAED + D I + T P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGTDEDALMEAALEAGAEDIVSYDDGAIDVFTDPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYTVKDALDKAHFVADNAEIAMIASTKAELDLDTAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|429333867|ref|ZP_19214551.1| hypothetical protein CSV86_18497 [Pseudomonas putida CSV86]
gi|428761474|gb|EKX83704.1| hypothetical protein CSV86_18497 [Pseudomonas putida CSV86]
Length = 248
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGGDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + +N+ E+ YEGY G AI+V+ +T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAIARGAGTAEADNVE--ELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFGEGVDEDALMEAAMEADADDVVSNGDGSFDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++++LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRSALEAAGFKASDAEIVMQPTTSAELDLDGAQKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|146306301|ref|YP_001186766.1| hypothetical protein Pmen_1269 [Pseudomonas mendocina ymp]
gi|145574502|gb|ABP84034.1| protein of unknown function DUF28 [Pseudomonas mendocina ymp]
Length = 249
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 153/244 (62%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL N
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGPVPADNPRLRLAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ + I RAI + N NE N +E YEGY+ +G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MSREVIDRAIARGAGN--NEADNVVEFSYEGYAPSGVAIIVEVMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F P ++ L++ ALE GA+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISFAPGVDEDALMEAALEAGADDVEMGEDGSALVSTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
+F + +L GFKAE + I M P + D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 179 EFHAVNEALGAAGFKAEEAEIAMIPSISAPIADLETAQKVFKLIDMLEDLDDVQNVYHNA 238
Query: 239 LIFD 242
+ D
Sbjct: 239 EVAD 242
>gi|330829086|ref|YP_004392038.1| protein YebC [Aeromonas veronii B565]
gi|406677716|ref|ZP_11084896.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC35]
gi|423202154|ref|ZP_17188733.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER39]
gi|423207361|ref|ZP_17193917.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC34]
gi|423210222|ref|ZP_17196776.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER397]
gi|328804222|gb|AEB49421.1| Protein YebC [Aeromonas veronii B565]
gi|404615306|gb|EKB12278.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER39]
gi|404616110|gb|EKB13068.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AER397]
gi|404620428|gb|EKB17325.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC34]
gi|404623523|gb|EKB20373.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas veronii
AMC35]
Length = 246
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ + G+ +P N +LR A+ AL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVTAALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ E + I YEGY G+A++V+C+T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGGDGEQLETI--VYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G L F+ ++ L+D ALE GA+D + ++D I + T+P+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGLLTFV-GVDEDALMDAALEAGADDVVTEEDGTIEVYTTPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + LE GFKA+S+ + M P T A KL +L++ L+ L DV++VY N
Sbjct: 178 DFGTVLDGLEAAGFKAQSAEVTMIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVYHNGS 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|217973217|ref|YP_002357968.1| hypothetical protein Sbal223_2041 [Shewanella baltica OS223]
gi|217498352|gb|ACK46545.1| protein of unknown function DUF28 [Shewanella baltica OS223]
Length = 248
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 153/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRVAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T ++ L++ ALE GAED + D + + T P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGTDEDALMEAALEAGAEDIVSYDDGAMDVFTDPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYTVKDALDKASFVADNAEIAMIASTKAELDLDTAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|149375109|ref|ZP_01892881.1| hypothetical protein MDG893_05809 [Marinobacter algicola DG893]
gi|149360473|gb|EDM48925.1| hypothetical protein MDG893_05809 [Marinobacter algicola DG893]
Length = 249
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+I+REL VA G NPD N +LR I+KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKIIRELTVAARQGGGNPDDNPRLRGVIDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+++ + ++ NY E+ YEGY G AI V+ +T+NR RTV++IR+ N
Sbjct: 61 MKKDTIERAVERGAGD--GDDSNYEELTYEGYGPGGVAIFVEVMTDNRNRTVADIRHALN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ AL GAED D I+T P
Sbjct: 119 KMGGNLGTDGSVAYLFSKQGIISYSPEMDEDRLMEAALVAGAEDLATLSDGSFEIVTVPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F+++K SL +G +++ + M P T + + A + KL++ L+ L DV+ VY NA
Sbjct: 179 QFLDVKQSLVESGLIPDNAEVTMVPSTTVELGEEGAEPILKLIDMLEDLDDVQNVYHNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|452748237|ref|ZP_21948018.1| hypothetical protein B381_10793 [Pseudomonas stutzeri NF13]
gi|452007818|gb|EME00070.1| hypothetical protein B381_10793 [Pseudomonas stutzeri NF13]
Length = 249
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKLIRELTVAARHGGGVPADNPRLRLAVDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + + +N+ E+ YEGY+ +G AII++ +T+NR RT + +R+ F+
Sbjct: 61 MSRDVIDRAIARGAGSSEADNMT--ELSYEGYAPSGVAIIIEAMTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL +GSV +MF GQ+ + P ++ L++ ALE GA+D + +D + + TS +
Sbjct: 119 KNGGNLGTDGSVAYMFDRKGQISYAPGVDEDALMEAALEAGADDVVSQEDGSVEVYTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +L G + + + + M P D E A K+ +L++ L+ L DV+ VY NA
Sbjct: 179 DFLSVNEALTEAGLRGDEAEVAMIPSIMAPITDVETAQKVLRLIDALEDLDDVQNVYHNA 238
Query: 239 LIFD 242
I D
Sbjct: 239 EISD 242
>gi|451970301|ref|ZP_21923528.1| hypothetical protein C408_0140 [Vibrio alginolyticus E0666]
gi|451933815|gb|EMD81482.1| hypothetical protein C408_0140 [Vibrio alginolyticus E0666]
Length = 248
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++N+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDNMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + P ++ ++++ALE GA+D +D I + T+PS
Sbjct: 119 KSGGNLGTDGSVNYLFDKKGVISYAPGLDEDAVMEVALESGADDIETSEDGSIDVYTAPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+AE++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGLVKDALDAAGFEAENAEVSLIPSTKAELDVDTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|160875534|ref|YP_001554850.1| hypothetical protein Sbal195_2422 [Shewanella baltica OS195]
gi|378708733|ref|YP_005273627.1| hypothetical protein [Shewanella baltica OS678]
gi|418025330|ref|ZP_12664309.1| UPF0082 protein yeeN [Shewanella baltica OS625]
gi|160861056|gb|ABX49590.1| protein of unknown function DUF28 [Shewanella baltica OS195]
gi|315267722|gb|ADT94575.1| protein of unknown function DUF28 [Shewanella baltica OS678]
gi|353535314|gb|EHC04877.1| UPF0082 protein yeeN [Shewanella baltica OS625]
Length = 248
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRVAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T+++ L++ ALE GAED + D + + T P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGTEEDALMEAALEAGAEDIVSYDDGAMDVFTDPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYTVKDALDKAHFVADNAEIAMIASTKAELDLDTAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|337755572|ref|YP_004648083.1| hypothetical protein F7308_1559 [Francisella sp. TX077308]
gi|336447177|gb|AEI36483.1| hypothetical protein F7308_1559 [Francisella sp. TX077308]
Length = 248
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI A N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATAFANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI K ++ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTVERAILKGAGG--DDGANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L++ ALE GAED + +D I + T+P+
Sbjct: 119 KSGGNLGTDGSVAYMFTKKGIISFAPGVDEDALMEEALEAGAEDIITHEDGSIDVFTAPN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +++ +L GF++ES+ + T + A K+ L+++L+ L DV+ VY+NA
Sbjct: 179 DFSDVQEALVEKGFESESAEVTFDAETKADMEIEVAEKVINLIDKLEDLDDVQNVYSNA 237
>gi|334144114|ref|YP_004537270.1| hypothetical protein Thicy_1024 [Thioalkalimicrobium cyclicum ALM1]
gi|333965025|gb|AEG31791.1| UPF0082 protein yeeN [Thioalkalimicrobium cyclicum ALM1]
Length = 251
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 153/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GK+ T+++REL VA G +P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKARQDAKKGKVFTKLIRELVVAAKAGGPHPEDNPRLRSAIDKALGEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AI + N E +Y E+RYEGY+ G A++VDC+T+NR RTV +R+ F+
Sbjct: 61 MRRDTIDKAIARGAGN--QEGDDYEEIRYEGYAPAGVAVMVDCLTDNRNRTVGEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF G + F P + ++ +++ A+E GAED +D D I +IT+P
Sbjct: 119 KKGGNLGTDGSVAYMFVKQGLIQFEPGSDEDAVMEAAIEAGAEDVKVDSDGSIAVITAPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ + +++ + GF I M + +A ++ +++ L+ L DV++VYTN
Sbjct: 179 EVHPVADAIILAGFTPAHVDISMEADIKVRLDFEDAQRVMAMIDMLEDLDDVQQVYTNLD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|89256280|ref|YP_513642.1| hypothetical protein FTL_0929 [Francisella tularensis subsp.
holarctica LVS]
gi|115314732|ref|YP_763455.1| hypothetical protein FTH_0908 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502346|ref|YP_001428411.1| hypothetical protein FTA_0979 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254367615|ref|ZP_04983636.1| hypothetical protein FTHG_00883 [Francisella tularensis subsp.
holarctica 257]
gi|254369263|ref|ZP_04985275.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|290953115|ref|ZP_06557736.1| hypothetical protein FtulhU_01559 [Francisella tularensis subsp.
holarctica URFT1]
gi|422938692|ref|YP_007011839.1| hypothetical protein FTS_0912 [Francisella tularensis subsp.
holarctica FSC200]
gi|423050628|ref|YP_007009062.1| hypothetical protein F92_05115 [Francisella tularensis subsp.
holarctica F92]
gi|119392012|sp|Q2A3R0.1|Y929_FRATH RecName: Full=Probable transcriptional regulatory protein FTL_0929
gi|122325247|sp|Q0BM66.1|Y908_FRATO RecName: Full=Probable transcriptional regulatory protein FTH_0908
gi|166227544|sp|A7NBV2.1|Y979_FRATF RecName: Full=Probable transcriptional regulatory protein FTA_0979
gi|89144111|emb|CAJ79368.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129631|gb|ABI82818.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|134253426|gb|EBA52520.1| hypothetical protein FTHG_00883 [Francisella tularensis subsp.
holarctica 257]
gi|156252949|gb|ABU61455.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122213|gb|EDO66353.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|407293843|gb|AFT92749.1| hypothetical protein FTS_0912 [Francisella tularensis subsp.
holarctica FSC200]
gi|421951350|gb|AFX70599.1| hypothetical protein F92_05115 [Francisella tularensis subsp.
holarctica F92]
Length = 248
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 146/239 (61%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAIVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+ L GF +E++ + T A K+ L+++L+ L V+ VY+NA
Sbjct: 179 DFSDIQEVLIEKGFNSENAEVTFDAETKAELDTETAEKVMALIDKLEDLDYVQSVYSNA 237
>gi|262394696|ref|YP_003286550.1| hypothetical protein VEA_003925 [Vibrio sp. Ex25]
gi|262338290|gb|ACY52085.1| hypothetical protein VEA_003925 [Vibrio sp. Ex25]
Length = 248
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++N+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDNMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + P ++ ++++ALE GA+D +D I + T+PS
Sbjct: 119 KSGGNLGTDGSVNYLFDKKGVISYAPGLDEDVVMEVALESGADDIETSEDGSIDVYTAPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+AE++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGLVKDALDAAGFEAENAEVSLIPSTKAELDVDTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|127513006|ref|YP_001094203.1| hypothetical protein Shew_2078 [Shewanella loihica PV-4]
gi|126638301|gb|ABO23944.1| protein of unknown function DUF28 [Shewanella loihica PV-4]
Length = 248
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELDGQVLETI--MYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F+ G + + + ++T++D AL+ GAED + + D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYLFEKRGVISYAEGSDEDTIMDAALDAGAEDVVTNDDTSIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G A ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 179 AFGTVKDALDAAGLDAVNAEVTMVPSTKAELDAETAPKFLRLIDNLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|189424310|ref|YP_001951487.1| hypothetical protein Glov_1245 [Geobacter lovleyi SZ]
gi|226696294|sp|B3E787.1|Y1245_GEOLS RecName: Full=Probable transcriptional regulatory protein Glov_1245
gi|189420569|gb|ACD94967.1| protein of unknown function DUF28 [Geobacter lovleyi SZ]
Length = 247
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 153/238 (64%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGKI T+I++E+ VA G +P N +LR AI+KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKIFTKIIKEISVAAKLGGGDPAANPRLRTAIDKAKGEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E + Y E+ YEGY G A++V+ +T+NR RTVS +R+IF
Sbjct: 61 MPKDNIERAIKKGTGGM--EGVVYEEIVYEGYGPGGVAVLVEVMTDNRNRTVSEVRSIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V +MF G + + + + L + ALE GAED ++++D +I + T PS
Sbjct: 119 KCNGNMGEAGCVAWMFDKKGVISYDTSLDFDQLFEAALEAGAED-VVEEDEQIEVYTEPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
FIE++++LE GFK +S+ I M P T + + +A + K+++ L+ DV+ VY N
Sbjct: 178 SFIEVRDALEAKGFKFQSAEITMIPQTQVALEGKQAESMLKMMDRLEDCDDVQNVYAN 235
>gi|408480177|ref|ZP_11186396.1| hypothetical protein PsR81_06435 [Pseudomonas sp. R81]
Length = 248
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQITFAPGTDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|422645714|ref|ZP_16708849.1| hypothetical protein PMA4326_11977 [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959263|gb|EGH59523.1| hypothetical protein PMA4326_11977 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 248
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G A++V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAVMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ L++ A+E A+D + ++D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GF A + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFNAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|229592303|ref|YP_002874422.1| hypothetical protein PFLU4916 [Pseudomonas fluorescens SBW25]
gi|229364169|emb|CAY51825.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 248
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGTDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|145299763|ref|YP_001142604.1| hypothetical protein ASA_2843 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418358211|ref|ZP_12960891.1| hypothetical protein IYQ_07471 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|166200355|sp|A4SPN4.1|Y2843_AERS4 RecName: Full=Probable transcriptional regulatory protein ASA_2843
gi|142852535|gb|ABO90856.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356688570|gb|EHI53128.1| hypothetical protein IYQ_07471 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 246
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 153/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ + G+ +P N +LR A+ AL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITTSARIGDPDPANNPRLRAAVTAALTSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ + I RAI + E + I YEGY G+A++V+C+T+NR RTV+ +R+ F+
Sbjct: 61 MTRETINRAIARGAGGGDGEQLETI--VYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L F+ ++ L+D ALE GA+D + ++D I + T+P+
Sbjct: 119 KSGGNLGTDGSVAYLFSKKGLLTFV-GVDEDALMDAALEAGADDVVTEEDGSIEVYTTPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + ++LE GFKA+++ + M P T A KL +L++ L+ L DV++VY N
Sbjct: 178 DFGTVLDALEAAGFKAQNAEVTMIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVYHNGS 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|28871125|ref|NP_793744.1| hypothetical protein PSPTO_3980 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|33517005|sp|Q87Y32.1|Y3980_PSESM RecName: Full=Probable transcriptional regulatory protein
PSPTO_3980
gi|28854375|gb|AAO57439.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 248
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G A++V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAVMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F +++L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDSLIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GF A + IVM P T+ V A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFMAADAEIVMLPTTSAVLDLETAEKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|330502217|ref|YP_004379086.1| hypothetical protein [Pseudomonas mendocina NK-01]
gi|328916503|gb|AEB57334.1| hypothetical protein MDS_1303 [Pseudomonas mendocina NK-01]
Length = 249
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL N
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGPIPADNPRLRLAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ + I RAI + N NE N +E YEGY+ +G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MSREVIDRAIARGAGN--NEADNVVEFSYEGYAPSGVAIIVEVMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF GQ+ F P ++ L++ ALE GA+D + +D + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFDRKGQISFAPGVDEDALMEAALEAGADDVEMGEDGSALVSTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
+F + +L GFK E + I M P + D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 179 EFHAVNEALSAAGFKGEEAEIAMIPSISAPITDLETAQKVFKLIDMLEDLDDVQNVYHNA 238
Query: 239 LIFD 242
+ D
Sbjct: 239 EVAD 242
>gi|410087795|ref|ZP_11284496.1| hypothetical protein YebC [Morganella morganii SC01]
gi|421493628|ref|ZP_15940983.1| YEBC [Morganella morganii subsp. morganii KT]
gi|455739168|ref|YP_007505434.1| hypothetical protein YebC [Morganella morganii subsp. morganii KT]
gi|400192005|gb|EJO25146.1| YEBC [Morganella morganii subsp. morganii KT]
gi|409765789|gb|EKN49892.1| hypothetical protein YebC [Morganella morganii SC01]
gi|455420731|gb|AGG31061.1| hypothetical protein YebC [Morganella morganii subsp. morganii KT]
Length = 247
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTASRIGGPDPASNPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+N+ I YEGY G A++V+C+T+NR RTVS++R+ F
Sbjct: 61 MTRDTLNRAIARGAGNDENDNMESI--VYEGYGPGGTAVMVECLTDNRKRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GAED D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTRKGIISYAPGLDEDAVMDAALEAGAEDVETFDDGAIDVYTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++K++++ GFKAES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 ILGDVKDAMDAAGFKAESAEVSMIPSTKADLDAETAPKLMRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|344198382|ref|YP_004782708.1| hypothetical protein Acife_0144 [Acidithiobacillus ferrivorans SS3]
gi|343773826|gb|AEM46382.1| UPF0082 protein yeeN [Acidithiobacillus ferrivorans SS3]
Length = 250
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 157/243 (64%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK + DAKRGKI TR++RE+ VA G +P +N +LRLA++KA AN
Sbjct: 1 MSGHSKWSTIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPASNSRLRLALDKAYGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+++ + E ++Y EV YEGY G AI+++ +T+N++RTV+ +R+IF+
Sbjct: 61 MTKDTIERAVKRGTGEL--EGVDYEEVTYEGYGPGGVAILIETMTDNKVRTVAEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ GSV + FK G ++F + ++ +L+ ALE GAED ++++ +I + T+PS
Sbjct: 119 KRGGNMGTAGSVAYQFKKLGLIIFPADADEDRILEAALEAGAED-VVNEGERIAVYTAPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +LE G K E S + M P I EA KL +L++ L++ DV+ VY N
Sbjct: 178 DLHSVVLALEAAGLKPEESEMTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNVYANYE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|198282208|ref|YP_002218529.1| hypothetical protein Lferr_0060 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666356|ref|YP_002424573.1| hypothetical protein AFE_0059 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|416000561|ref|ZP_11560699.1| hypothetical protein GGI1_20463 [Acidithiobacillus sp. GGI-221]
gi|226734030|sp|B7J3G0.1|Y059_ACIF2 RecName: Full=Probable transcriptional regulatory protein AFE_0059
gi|226734031|sp|B5EJL6.1|Y060_ACIF5 RecName: Full=Probable transcriptional regulatory protein
Lferr_0060
gi|198246729|gb|ACH82322.1| protein of unknown function DUF28 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518569|gb|ACK79155.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339835973|gb|EGQ63600.1| hypothetical protein GGI1_20463 [Acidithiobacillus sp. GGI-221]
Length = 250
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 157/243 (64%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK + DAKRGKI TR++RE+ VA G +P +N +LRLA++KA AN
Sbjct: 1 MSGHSKWSTIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPASNSRLRLALDKAYGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ + E ++Y EV YEGY G AI+++ +T+N++RTV+ +R+IF+
Sbjct: 61 MTKDTIERAIKRGTGEL--EGVDYEEVTYEGYGPGGVAILIETMTDNKVRTVAEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ GSV + FK G ++F + ++ +L+ ALE GAED ++++ +I + T+PS
Sbjct: 119 KRGGNMGTAGSVAYQFKKLGLIVFPADADEDRILEAALEAGAED-VVNEGERIAVYTAPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +LE G K E S + M P I EA KL +L++ L++ DV+ VY N
Sbjct: 178 DLHSVVLALEAAGLKPEESEMTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNVYANYD 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|395650825|ref|ZP_10438675.1| hypothetical protein Pext1s1_19689 [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 248
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGTDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKGTDAEIVMLPTTSAELDLEGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|222055419|ref|YP_002537781.1| hypothetical protein Geob_2326 [Geobacter daltonii FRC-32]
gi|254801298|sp|B9LZC7.1|Y2326_GEOSF RecName: Full=Probable transcriptional regulatory protein Geob_2326
gi|221564708|gb|ACM20680.1| protein of unknown function DUF28 [Geobacter daltonii FRC-32]
Length = 247
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 156/238 (65%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGKI T++++E+ VA G +PD N +LR AI+KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKIFTKLIKEITVAAKLGGGDPDGNPRLRTAIDKAKGEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + + Y E YEGY GAA++V+ +T+NR RTVS++R+IF
Sbjct: 61 MPKDNIERAIKKGTGGM--DGVVYEETTYEGYGPGGAAVLVEVMTDNRNRTVSDVRSIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V +MF G ++F + + L + A+E GAED + D+D +I + T PS
Sbjct: 119 KCNGNMGEAGCVSWMFDKKGLIVFPKSVDFDKLFEAAIEAGAED-VSDEDEQIEVTTDPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F+E++++LE GFK +S+ + M P T + + +A + KL++ ++ DV+ VY+N
Sbjct: 178 NFMEVRDALEKAGFKPDSAEVTMIPQTMVKLEGKQAENMLKLMDRMEDNDDVQNVYSN 235
>gi|126174261|ref|YP_001050410.1| hypothetical protein Sbal_2039 [Shewanella baltica OS155]
gi|386341101|ref|YP_006037467.1| hypothetical protein [Shewanella baltica OS117]
gi|125997466|gb|ABN61541.1| protein of unknown function DUF28 [Shewanella baltica OS155]
gi|334863502|gb|AEH13973.1| protein of unknown function DUF28 [Shewanella baltica OS117]
Length = 248
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRVAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+N RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNSNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P T ++ L++ ALE GAED + D + + T P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGTDEDALMEAALEAGAEDIVSYDDGAMDVFTDPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYTVKDALDKASFVADNAEIAMIASTKAELDLDTAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|358447635|ref|ZP_09158152.1| hypothetical protein KYE_00115 [Marinobacter manganoxydans MnI7-9]
gi|357228138|gb|EHJ06586.1| hypothetical protein KYE_00115 [Marinobacter manganoxydans MnI7-9]
Length = 247
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 150/241 (62%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+I+REL VA G NPD N +LR I+KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKIIRELTVAARQGGGNPDDNPRLRAVIDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+++ ++ NY E+ YEGY G AI V+ +T+N+ R+V+ IR+ FN
Sbjct: 61 MKKDTIERAVERGAGG--GDDDNYEELTYEGYGPGGVAIFVEVMTDNKNRSVAEIRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ L++ L GAED +D I+T+P
Sbjct: 119 KMGGNLGTDGSVAYLFSKQGIISYGPEWEEDRLVEAVLSAGAEDLAAQEDGSWEIVTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F+++K SL G +++ + M P T + A + KL++ L+ L DV+ VY NA
Sbjct: 179 QFLDVKESLVNAGLVPDNAEVTMVPSTRVELDRDGAETILKLIDMLEDLDDVQNVYHNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|398937556|ref|ZP_10667301.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM41(2012)]
gi|398166837|gb|EJM54925.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM41(2012)]
Length = 248
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + +D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALMEAAMEADADDVVTHEDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|91228186|ref|ZP_01262168.1| hypothetical protein V12G01_20563 [Vibrio alginolyticus 12G01]
gi|91188175|gb|EAS74476.1| hypothetical protein V12G01_20563 [Vibrio alginolyticus 12G01]
Length = 248
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++N+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDNMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + P ++ ++++ALE GA+D +D I + T+P
Sbjct: 119 KSGGNLGTDGSVNYLFDKKGVISYGPGLDEDAVMEVALESGADDIETAEDGSIDVYTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+AE++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGLVKDALDAAGFEAENAEVSLIPSTKADLDADTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|398884122|ref|ZP_10639064.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM60]
gi|398195320|gb|EJM82368.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM60]
Length = 248
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQSVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|269967683|ref|ZP_06181733.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269827770|gb|EEZ82054.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 248
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++N+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDNMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + P ++ ++++ALE GA+D +D I + T+P
Sbjct: 119 KSGGNLGTDGSVNYLFDKKGVISYGPGLDEDAVMEVALESGADDIETAEDGSIDVYTAPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+AE++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGLVKDALDAAGFEAENAEVSLIPSTKADLDADNAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|254785045|ref|YP_003072473.1| hypothetical protein TERTU_0864 [Teredinibacter turnerae T7901]
gi|237685228|gb|ACR12492.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
Length = 247
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 150/242 (61%), Gaps = 4/242 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKR KI T+++REL VA G NP+ N KLR I+KAL AN
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRAKIFTKVIRELTVAAKAGGGNPEDNPKLRTTIDKALAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AI + E+ Y E+ YEGY V G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MKRDTIEKAIARGAGGADGES--YDEITYEGYGVGGVAVLVECLTDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQL F P + ++++ALE GAED D + +IT+
Sbjct: 119 KRGGNLGTDGSVAYLFARKGQLNFDPGCDEEKIMEVALEVGAEDIETHDDGSVDVITAFE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
++ +K+++ G + ++ I + P T + E A K L++ L+ L DV+ VYTNA
Sbjct: 179 DYLTVKDAMVAAGVEPANAEIALVPATQVEISSQEDADKTLGLIDMLEDLDDVQNVYTNA 238
Query: 239 LI 240
I
Sbjct: 239 DI 240
>gi|398880113|ref|ZP_10635183.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM67]
gi|398194256|gb|EJM81334.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM67]
Length = 248
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 159/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G++P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGSDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|300723089|ref|YP_003712387.1| hypothetical protein XNC1_2148 [Xenorhabdus nematophila ATCC 19061]
gi|297629604|emb|CBJ90207.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
Length = 247
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G PD+N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGEPDSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N +N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDADNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + ++ +++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYALGLDEDAVMEAALEAGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ GFKA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGFKADSAEVSMIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|253989951|ref|YP_003041307.1| hypothetical protein yebc [Photorhabdus asymbiotica]
gi|211639068|emb|CAR67681.1| hypothetical protein yebc [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781401|emb|CAQ84564.1| hypothetical protein yebc [Photorhabdus asymbiotica]
Length = 247
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N + +N+ I YEGY G A++V+C+++NR RTVS++R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDEADNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVAYLFTKKGVISYAPGLDEDAVMEAALEVGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ GF AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGDVKDALDAAGFVAESAEVSMIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|289209179|ref|YP_003461245.1| hypothetical protein TK90_2018 [Thioalkalivibrio sp. K90mix]
gi|288944810|gb|ADC72509.1| protein of unknown function DUF28 [Thioalkalivibrio sp. K90mix]
Length = 245
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 153/239 (64%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G++P+TN +LRLAI+KAL AN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIREITVAARQGGSDPETNPRLRLAIDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA ++ + E+RYEGY GAAI+VDC+T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTIERAAKRGAGETDGAAME--EIRYEGYGPGGAAILVDCMTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F++ G + F P T+++ ALE GAED ++ D I +IT P
Sbjct: 119 KMGGNLGTDGSVAYLFQNKGVIRFAPGLDDETVMEAALEGGAEDVQVEDDGAIEVITEPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++ +L G + ESS + RP T A + KLL L L DV+ V+TNA
Sbjct: 179 TYQDVRQALLDRGLEPESSEVTWRPETLSPLDAETAESVLKLLEMLDDLDDVQNVFTNA 237
>gi|398838742|ref|ZP_10596010.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM102]
gi|398114891|gb|EJM04689.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM102]
Length = 248
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 158/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F+P ++ L++ A+E A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFVPGVDEDALMEAAMEADADDVVTHEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|385331784|ref|YP_005885735.1| protein YebC [Marinobacter adhaerens HP15]
gi|311694934|gb|ADP97807.1| protein YebC [Marinobacter adhaerens HP15]
Length = 247
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 148/241 (61%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+I+REL VA G NPD N +LR I+KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKIIRELTVAARQGGGNPDDNPRLRAVIDKALTAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+++ ++ NY E YEGY G AI V+ +T+N+ R+V+ IR+ FN
Sbjct: 61 MKKDTIERAVERGTGG--GDDDNYEEQTYEGYGPGGVAIFVEVMTDNKNRSVAEIRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ L++ L GAED D I+T+P
Sbjct: 119 KMGGNLGTDGSVAYLFSKQGIISYGPEWEEDRLVEAVLSAGAEDLAAQDDGSWEIVTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F+++K SL G +++ + M P T + A + KL++ L+ L DV+ VY NA
Sbjct: 179 QFLDVKESLVNAGLVPDNAEVTMVPSTRVELDRDGAETILKLIDMLEDLDDVQNVYHNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|37526025|ref|NP_929369.1| hypothetical protein plu2109 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|49037280|sp|Q7N550.1|Y2109_PHOLL RecName: Full=Probable transcriptional regulatory protein plu2109
gi|36785455|emb|CAE14402.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 247
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + + +N+ I YEGY G A++V+C+++NR RTVS++R+ F
Sbjct: 61 MTRDTLNRAIARGVGSDEADNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GA+D D I + T+P
Sbjct: 119 KTGGNLGTDGSVAYLFAKKGVISYAPGLDEDAVMEAALEAGADDVETYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ GF AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGDVKDALDAAGFVAESAEVSMIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|375111422|ref|ZP_09757632.1| hypothetical protein AJE_15699 [Alishewanella jeotgali KCTC 22429]
gi|374568598|gb|EHR39771.1| hypothetical protein AJE_15699 [Alishewanella jeotgali KCTC 22429]
Length = 247
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 146/242 (60%), Gaps = 2/242 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWAN+K +K DAK+ KI T+++REL A + N +LRLA++KAL N+
Sbjct: 1 MAGHSKWANMKHRKARQDAKKNKIWTKMIRELTTAARISPDVAANPRLRLAVDKALSENM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I RAI++ E Y E+ YEGY G A+IV+ +T+N RTV+++R+ F+K
Sbjct: 61 TRDTIERAIKRGAGMQDGEQ--YEELVYEGYGPGGVAVIVETMTDNNKRTVADVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL GSV +MF+ G LLF P ++ LL+LAL+ GA+D D ++TSP
Sbjct: 119 YGGNLGTSGSVAYMFQRKGVLLFAPGIDEDQLLELALDAGADDVQSHDDGSQEVLTSPDA 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
F +K++L GF AES+ I + P T A + K+L+ L+ DV+ VY NA I
Sbjct: 179 FSAVKDALAAAGFTAESAEITLLPDTRAELDADTAARFIKMLDALEDSDDVQNVYHNADI 238
Query: 241 FD 242
D
Sbjct: 239 SD 240
>gi|395496741|ref|ZP_10428320.1| hypothetical protein PPAM2_11740 [Pseudomonas sp. PAMC 25886]
Length = 248
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|29654857|ref|NP_820549.1| hypothetical protein CBU_1566 [Coxiella burnetii RSA 493]
gi|153208307|ref|ZP_01946686.1| conserved hypothetical protein TIGR01033 [Coxiella burnetii 'MSU
Goat Q177']
gi|154706307|ref|YP_001423842.1| hypothetical protein CBUD_0422 [Coxiella burnetii Dugway 5J108-111]
gi|161830968|ref|YP_001597403.1| hypothetical protein COXBURSA331_A1752 [Coxiella burnetii RSA 331]
gi|212212082|ref|YP_002303018.1| hypothetical protein CbuG_0446 [Coxiella burnetii CbuG_Q212]
gi|212219278|ref|YP_002306065.1| hypothetical protein CbuK_1793 [Coxiella burnetii CbuK_Q154]
gi|33516993|sp|Q83BE4.1|Y1566_COXBU RecName: Full=Probable transcriptional regulatory protein CBU_1566
gi|189038999|sp|A9N9A0.1|Y1752_COXBR RecName: Full=Probable transcriptional regulatory protein
COXBURSA331_A1752
gi|189040287|sp|A9KF43.1|Y422_COXBN RecName: Full=Probable transcriptional regulatory protein CBUD_0422
gi|226695969|sp|B6J503.1|Y1793_COXB1 RecName: Full=Probable transcriptional regulatory protein CbuK_1793
gi|226706190|sp|B6IYU5.1|Y446_COXB2 RecName: Full=Probable transcriptional regulatory protein CbuG_0446
gi|29542126|gb|AAO91063.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
gi|120576091|gb|EAX32715.1| conserved hypothetical protein TIGR01033 [Coxiella burnetii 'MSU
Goat Q177']
gi|154355593|gb|ABS77055.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161762835|gb|ABX78477.1| conserved hypothetical protein TIGR01033 [Coxiella burnetii RSA
331]
gi|212010492|gb|ACJ17873.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212013540|gb|ACJ20920.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 244
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK K DAKRGK+ T+++RE+ VA G D+N +LR ++KA AN
Sbjct: 1 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI++ + +N+ +EVRYEGY +G A++VDC+T+N+ RTV+ +R+ F+
Sbjct: 61 MPKDTITRAIKRGAGSGAGDNL--VEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL EGSV ++FK G + F PN+ + ++++ALE GAED + D I + T P
Sbjct: 119 KCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEVGAEDVTTNDDGSIDVTTLPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+N+++ + + + T + A ++ +L L+ L DV+ VY+NA
Sbjct: 179 DFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNA 237
>gi|395794904|ref|ZP_10474219.1| hypothetical protein A462_06637 [Pseudomonas sp. Ag1]
gi|421138933|ref|ZP_15598981.1| hypothetical protein MHB_06596 [Pseudomonas fluorescens BBc6R8]
gi|395340953|gb|EJF72779.1| hypothetical protein A462_06637 [Pseudomonas sp. Ag1]
gi|404509890|gb|EKA23812.1| hypothetical protein MHB_06596 [Pseudomonas fluorescens BBc6R8]
Length = 248
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|397170128|ref|ZP_10493554.1| hypothetical protein AEST_13200 [Alishewanella aestuarii B11]
gi|396088334|gb|EJI85918.1| hypothetical protein AEST_13200 [Alishewanella aestuarii B11]
Length = 247
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 146/242 (60%), Gaps = 2/242 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWAN+K +K DAK+ KI T+++REL A + N +LRLA++KAL N+
Sbjct: 1 MAGHSKWANMKHRKARQDAKKNKIWTKMIRELTTAARISPDVAANPRLRLAVDKALSENM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I RAI++ E Y E+ YEGY G A+IV+ +T+N RTV+++R+ F+K
Sbjct: 61 TRDTIERAIKRGAGMQDGEQ--YEELVYEGYGPGGVAVIVETMTDNNKRTVADVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL GSV +MF+ G LLF P ++ LL+LAL+ GA+D D ++TSP
Sbjct: 119 YGGNLGTSGSVAYMFQRKGVLLFAPGIDEDQLLELALDAGADDVQSHDDGSQEVLTSPEA 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
F +K++L GF AES+ I + P T A + K+L+ L+ DV+ VY NA I
Sbjct: 179 FSAVKDALAAAGFTAESAEITLLPDTRAELDAETAARFIKMLDALEDSDDVQNVYHNADI 238
Query: 241 FD 242
D
Sbjct: 239 SD 240
>gi|343492641|ref|ZP_08731001.1| hypothetical protein VINI7043_25192 [Vibrio nigripulchritudo ATCC
27043]
gi|342826958|gb|EGU61359.1| hypothetical protein VINI7043_25192 [Vibrio nigripulchritudo ATCC
27043]
Length = 247
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGAEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++N+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDNMET--VIYEGYGPGGTAVMVECLTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++++ALE GA+D +D I + T+P+
Sbjct: 119 KAGGNLGTDGSVNYLFDKKGVISYAPGLDEDEVMEVALESGADDIETGEDGAIDVYTAPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+A ++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGSVKDALDAAGFEAANAEVSLIPSTKADLDADTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|149191828|ref|ZP_01870065.1| hypothetical protein VSAK1_00370 [Vibrio shilonii AK1]
gi|148834346|gb|EDL51346.1| hypothetical protein VSAK1_00370 [Vibrio shilonii AK1]
Length = 248
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++N+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDNMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++++ALE GA+D D I + T+P+
Sbjct: 119 KAGGNLGTDGSVNYLFDKKGVISYAPGLDEDEVMEVALEGGADDIETGDDGAIDVYTTPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G++A ++ + + P T + A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGAVKDALDGAGYQAANAEVTLVPSTKAEHDETTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|398859692|ref|ZP_10615362.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM79]
gi|407363399|ref|ZP_11109931.1| hypothetical protein PmanJ_06395 [Pseudomonas mandelii JR-1]
gi|398236341|gb|EJN22128.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM79]
Length = 248
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALMEAAMEADADDVVTHEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|388467966|ref|ZP_10142176.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
synxantha BG33R]
gi|388011546|gb|EIK72733.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
synxantha BG33R]
Length = 248
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQITFAPGTDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+L+ GF + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALQAAGFSGTDAEIVMLPTTSAELDLEGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|393762326|ref|ZP_10350953.1| hypothetical protein AGRI_05067 [Alishewanella agri BL06]
gi|392606561|gb|EIW89445.1| hypothetical protein AGRI_05067 [Alishewanella agri BL06]
Length = 247
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 145/242 (59%), Gaps = 2/242 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWAN+K +K DAK+ KI T+++REL A + N +LRLA++KAL N+
Sbjct: 1 MAGHSKWANMKHRKARQDAKKNKIWTKMIRELTTAARISPDVAANPRLRLAVDKALSENM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I RAI++ E Y E+ YEGY G A+IV+ +T+N RTV+++R+ F K
Sbjct: 61 TRDTIERAIKRGAGMQDGEQ--YEELVYEGYGPGGVAVIVETMTDNNKRTVADVRHAFTK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL GSV +MF+ G LLF P ++ LL+LAL+ GA+D D ++TSP
Sbjct: 119 YGGNLGTSGSVAYMFQRKGVLLFAPGIDEDQLLELALDAGADDVQSHDDGSQEVLTSPEA 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
F +K++L GF AES+ I + P T A + K+L+ L+ DV+ VY NA I
Sbjct: 179 FSAVKDALAAAGFTAESAEITLLPDTRAELDAETAARFIKMLDALEDSDDVQNVYHNADI 238
Query: 241 FD 242
D
Sbjct: 239 SD 240
>gi|242239586|ref|YP_002987767.1| hypothetical protein Dd703_2158 [Dickeya dadantii Ech703]
gi|242131643|gb|ACS85945.1| protein of unknown function DUF28 [Dickeya dadantii Ech703]
Length = 247
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++TL+D ALE GA+D L D I + T
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISYAPGLDEDTLMDAALEAGADDVLSFDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ GF AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGQVKDALDAAGFVAESAEVSMIPSTRADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|398899740|ref|ZP_10649174.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM50]
gi|398182185|gb|EJM69710.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM50]
Length = 248
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDGLMEAAMEADADDVVTHEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|389871888|ref|YP_006379307.1| hypothetical protein TKWG_10245 [Advenella kashmirensis WT001]
gi|388537137|gb|AFK62325.1| hypothetical protein TKWG_10245 [Advenella kashmirensis WT001]
Length = 197
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
Query: 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNR 107
+RLA +KA AN+PK+NI RAI + EN Y +RYEGY ++GAA+IVDC+T+NR
Sbjct: 1 MRLAWDKATAANMPKDNIQRAITRGAGGADGEN--YESIRYEGYGISGAAVIVDCMTDNR 58
Query: 108 MRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLID 167
RTVS++R+ K+GGNL ++GSV FMFKHCGQ +F P+ ++ ++++ALE GAED + D
Sbjct: 59 TRTVSDVRHALTKHGGNLGQDGSVAFMFKHCGQFIFSPDYSEDQIIEVALEAGAEDVVTD 118
Query: 168 KDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKK 227
++ I ++ P F +++ + E G K E G++M+P +A K+QK+L++L+
Sbjct: 119 EEGLIEVLCEPPLFSDVRAAFEKAGLKPEMEGVIMKPLNETELTGEDAKKMQKILDQLES 178
Query: 228 LHDVKKVYTNAL 239
L DV++VYT A+
Sbjct: 179 LDDVQEVYTTAV 190
>gi|114776336|ref|ZP_01451381.1| hypothetical protein SPV1_01412 [Mariprofundus ferrooxydans PV-1]
gi|114553166|gb|EAU55564.1| hypothetical protein SPV1_01412 [Mariprofundus ferrooxydans PV-1]
Length = 251
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 149/245 (60%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
M+GH+KW++IK KK VDAKRGKI TR +RE+ +A G ++PD N +LR AI A N
Sbjct: 1 MSGHNKWSSIKHKKAAVDAKRGKIFTRYIREITIAARLGGDDPDANPRLRAAITAAKGVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++NI RAI + ENI EVRYEGY G AI+VDC+T+NR RTV+++R+ FN
Sbjct: 61 MPRDNIERAISRGAGGDDGENIE--EVRYEGYGQGGVAILVDCMTDNRNRTVADVRSAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIIT-S 177
K GGN+ + G V +MF GQ +F T + L+++AL GA+D D D I++
Sbjct: 119 KGGGNMGEAGCVSWMFHQKGQFVFASGTVDEEQLMEVALGAGADDIEEDSDAGCMIVSCE 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ F + +L+ G +A+ S I P +I + A K+ L+ L+ L DV+ VY N
Sbjct: 179 PTAFGTLHQALDDVGLEAQVSEISWVPENSISVEGEAAEKVLALIERLEDLDDVQNVYAN 238
Query: 238 ALIFD 242
I D
Sbjct: 239 YDISD 243
>gi|398844061|ref|ZP_10601168.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM84]
gi|398254945|gb|EJN39995.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM84]
Length = 248
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGADPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NEN N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NENDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGIDEDALMEAAMEADADDVVANDDGSFEVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQEGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|387886936|ref|YP_006317235.1| hypothetical protein OOM_1352 [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871752|gb|AFJ43759.1| hypothetical protein OOM_1352 [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 248
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI A N
Sbjct: 1 MAGHSKWANIKHKKAREDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATAFANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI K + N+ EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTVERAILKGAGGDDSANVE--EVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYMFTKKGIISFAPGFDEDVLMEVALEAGAEDIITHEDGSIDVFTTPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F +++ +L + GF ++++ + T A K+ L++ L+ L+DV+ VY+N
Sbjct: 179 DFSDVQEALIVKGFNSDNAEVTFDAETKAELDIEIAEKVMNLIDRLEDLYDVQNVYSN 236
>gi|381158519|ref|ZP_09867752.1| DNA-binding regulatory protein, YebC/PmpR family [Thiorhodovibrio
sp. 970]
gi|380879877|gb|EIC21968.1| DNA-binding regulatory protein, YebC/PmpR family [Thiorhodovibrio
sp. 970]
Length = 249
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K D KRGKI T+++RE+ V A G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDKKRGKIWTKLIREVTVSAREGGADPGSNPRLRLAMDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + RAI++ ++ NY E+RYEGY G A++VDC+T+NR RT S +R+ F+
Sbjct: 61 MPKDTVDRAIKRGAG--ADDGDNYEEIRYEGYGPGGVAVMVDCMTDNRNRTASEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + F P T ++ +++ +E GAED ++++D + +IT P
Sbjct: 119 KHGGNLGTDGSVAYLFTKQGVISFQPGTDEDAVIEAGIEAGAEDVVVNEDGSLDVITLPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++ + +L G S + TN+ A KL KL++ L L DV+ VY NA
Sbjct: 179 TYVSVCEALAGAGLDTSVSEVGFNASTNVELDRDTAEKLLKLIDTLDDLDDVQDVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|225849643|ref|YP_002729877.1| hypothetical protein PERMA_0079 [Persephonella marina EX-H1]
gi|254799888|sp|C0QT62.1|Y079_PERMH RecName: Full=Probable transcriptional regulatory protein
PERMA_0079
gi|225645009|gb|ACO03195.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 250
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 152/241 (63%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+ KK +DAKRG++ T+I+RE+ VA G +P+ N +LR+AIEKA AN
Sbjct: 1 MAGHSKWHNIRHKKAKMDAKRGQMFTKIIREITVAARQGGGDPEFNPRLRIAIEKAKKAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + E ++Y EV YEGY G AIIV+C+T+NR RT +R+IF
Sbjct: 61 MPVENIERAIKRGTGEL--EGVSYEEVVYEGYGPEGVAIIVECLTDNRNRTTGEVRHIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V F+F+ G ++ +P K + T+ + A+E GAED + D + I T
Sbjct: 119 KHGGNLGSSGCVSFLFEEKG-VILVPKDKYDEETVFEKAIEAGAEDVITDDEEFYEIRTE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
P + +K +LE G + E + + P T + D E A KL KLL+ L+ DV+KVY+
Sbjct: 178 PKELYTVKENLEKEGIEIEKAELTRIPTTTVEINDEETATKLMKLLDALEDNDDVQKVYS 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|398995439|ref|ZP_10698322.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM21]
gi|398129813|gb|EJM19167.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM21]
Length = 248
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGIDEDALIEAAMEADADDVVTHEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|383935764|ref|ZP_09989197.1| UPF0082 protein [Rheinheimera nanhaiensis E407-8]
gi|383703083|dbj|GAB59288.1| UPF0082 protein [Rheinheimera nanhaiensis E407-8]
Length = 247
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWAN+K +K DAK+ KI T+I+REL VA NPD N +LRLA++KAL
Sbjct: 1 MAGHSKWANMKHRKARQDAKKNKIFTKIIRELTVAARL--NPDISANPRLRLAVDKALSE 58
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAI++ + EN Y E+ YEGY G A+IV+ +T+N RTV+++R+ F
Sbjct: 59 NMTRDTIDRAIKRGAGASEGEN--YDELVYEGYGPGGVAVIVETMTDNHKRTVADVRHAF 116
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L GSV ++F G LLF P ++ L+D ALE GAED + D I ++T+
Sbjct: 117 TKAGGSLGTTGSVAYLFSRRGVLLFAPGVDEDALMDAALEAGAEDIMNHDDGSIEVLTAA 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++ ++K++L GF A++S + + P + A KLL++L+ DV+ VY NA
Sbjct: 177 EQYNDVKDALAAAGFNADNSEVTLIPASRCEVTAEHAAAFFKLLDQLEDSDDVQNVYHNA 236
Query: 239 LIFD 242
I D
Sbjct: 237 DISD 240
>gi|339488896|ref|YP_004703424.1| hypothetical protein PPS_4003 [Pseudomonas putida S16]
gi|431803996|ref|YP_007230899.1| hypothetical protein B479_20320 [Pseudomonas putida HB3267]
gi|338839739|gb|AEJ14544.1| conserved hypothetical protein [Pseudomonas putida S16]
gi|430794761|gb|AGA74956.1| hypothetical protein B479_20320 [Pseudomonas putida HB3267]
Length = 248
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGADPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P +++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVEEDALMEAAMEADADDVVANDDGSFDVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|386010859|ref|YP_005929136.1| hypothetical protein PPUBIRD1_1251 [Pseudomonas putida BIRD-1]
gi|313497565|gb|ADR58931.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 248
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P +++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVEEDALMEAAMEADADDVVANDDGSFDVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|444379263|ref|ZP_21178446.1| hypothetical protein D515_3345 [Enterovibrio sp. AK16]
gi|443676648|gb|ELT83346.1| hypothetical protein D515_3345 [Enterovibrio sp. AK16]
Length = 248
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSK+ANIK +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKFANIKHRKAAQDAKRGKIFTKLIREIVVATKEGGPEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + EN+ V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVTRGAGGEGEENMET--VIYEGYGPAGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++++++ ALE GA+D D + + T+P+
Sbjct: 119 KAGGNLGTDGSVSYLFDKKGVISYAPGLDEDSVMEAALEGGADDVETHDDGSMDVYTTPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F +K++L+ GF+A+++ + + P T + A KL +L++ L+ L DV++VY N
Sbjct: 179 EFGAVKDALDAAGFEAQNAEVTLVPSTKADLDETTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|338814877|ref|ZP_08626852.1| hypothetical protein ALO_21429 [Acetonema longum DSM 6540]
gi|337273182|gb|EGO61844.1| hypothetical protein ALO_21429 [Acetonema longum DSM 6540]
Length = 246
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DA +GK+ T+I RE+ +A+ N G++P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKMDAIKGKVTTKISREITIAVKNGGSDPAGNMRLKLALQKARENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK NI RAIQK + + +Y E+ YEGY G AI++D +T+NR RT ++IR++F+
Sbjct: 61 IPKENIQRAIQKGAGAL--DGSSYEEILYEGYGPGGVAIMLDIMTDNRNRTAADIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + G V +MF G + + + +L+ L L+ GAEDF + + IIT+P
Sbjct: 119 KHGGNLGESGCVSWMFAQKGIIRVEKSAADEESLMLLVLDAGAEDFSAEDEEAFEIITAP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+F + N+LE + SS I M P T I +A KL KL++ L++ DV++VY N
Sbjct: 179 DQFEAVHNALEASKITVASSEITMVPQTTIALAGDDAAKLIKLVDALEEHDDVQEVYGN 237
>gi|404493988|ref|YP_006718094.1| hypothetical protein Pcar_2335 [Pelobacter carbinolicus DSM 2380]
gi|119391302|sp|Q3A233.1|Y2335_PELCD RecName: Full=Probable transcriptional regulatory protein Pcar_2335
gi|77546012|gb|ABA89574.1| protein of unknown function DUF28 [Pelobacter carbinolicus DSM
2380]
Length = 248
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T++++E+ VA G + N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIKEITVAAKIGGGDLEANARLRLAVDKAKQAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K ++ + + Y E +EGY G A+IV+ +T+NR RTV+++R+ FN
Sbjct: 61 MPKDNIERAIKKGTGDL--DGVTYEEGTFEGYGPGGVAVIVEFMTDNRTRTVADVRHSFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GG+L GSV FMF GQ++F N+ + ++ALE GAED + D+D +IT+P+
Sbjct: 119 KFGGSLGVSGSVAFMFDRKGQIIFGENSDFEKIFEVALEAGAED-VNDEDGVTEVITAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+L G ES+ + M P + +A L K+++ L+ DV+ V+ N
Sbjct: 178 DFETVRNTLAEQGLTPESAEVTMIPQNMTAVEGKQAESLMKMIDMLEDNDDVQNVFANFD 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|167627792|ref|YP_001678292.1| hypothetical protein Fphi_1565 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189038953|sp|B0TZD8.1|Y1570_FRAP2 RecName: Full=Probable transcriptional regulatory protein Fphi_1565
gi|167597793|gb|ABZ87791.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 248
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI A N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATAFANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI K +++ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTVERAILKGAGG--DDSANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYMFTKKGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVFTTPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F +++ +L GF ++++ + T A K+ L++ L+ L DV+ VY+N
Sbjct: 179 DFSDVQEALIAKGFNSDNAEVTFDAETKAELDIEIAEKVMNLIDRLEDLDDVQNVYSN 236
>gi|293395806|ref|ZP_06640088.1| glucose-1-phosphate adenylyl transferase [Serratia odorifera DSM
4582]
gi|291421743|gb|EFE94990.1| glucose-1-phosphate adenylyl transferase [Serratia odorifera DSM
4582]
Length = 247
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD+N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++TL++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITYAPGLDEDTLMEAALEAGAEDIVTYDDGAIDVYTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++L GF AE++ + M P T + A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALTAAGFTAEAAEVSMIPSTKADMDEETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|372273405|ref|ZP_09509453.1| hypothetical protein MstaS_20103 [Marinobacterium stanieri S30]
Length = 245
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G NP+ N +LR A++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVAAKEGGGNPEDNPRLRAAVDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I +AI + E NY E+ YEGY NG AI+V+C+T+N RTVS +R FN
Sbjct: 61 MKKDTIEKAIARGAGG--GEGDNYDELTYEGYGPNGVAILVECMTDNVNRTVSQVRAAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV ++F+ GQ+ F + ++ +++ ALE GA+D + ++D I +
Sbjct: 119 KAGGNLGTNGSVAYLFEKKGQISFGDDADEDAIMEAALEAGADDVVTNEDGSIDVFAPWQ 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F+++K L G + + + M P T + K KL++ L+ L D + VY NA
Sbjct: 179 EFMDVKQGLMDAGLEPVYAEVGMIPSTTVDLDVDTGTKALKLIDALEDLDDTQNVYHNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|167035197|ref|YP_001670428.1| hypothetical protein PputGB1_4204 [Pseudomonas putida GB-1]
gi|166861685|gb|ABZ00093.1| protein of unknown function DUF28 [Pseudomonas putida GB-1]
Length = 248
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P +++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVEEDALMEAAMEADADDVVANDDGSFEVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|269468787|gb|EEZ80391.1| hypothetical protein Sup05_0827 [uncultured SUP05 cluster
bacterium]
Length = 246
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 12/247 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-----NNPDTNIKLRLAIEKA 55
MAGHSKW NI+ +K DAKRGKI T++++E+ +A G NNP LR+ I+KA
Sbjct: 1 MAGHSKWHNIQHRKGAQDAKRGKIFTKLIKEIVIAAKVGGGVIENNP----SLRMVIDKA 56
Query: 56 LDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115
L AN+ ++ I A+++ + ++ EN Y EVRYEGY + G AI+VD +T+NR RTV+++R
Sbjct: 57 LAANMKRDTIESAVKRGSGDLDGEN--YDEVRYEGYGLGGTAIMVDTLTDNRNRTVADVR 114
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+ F+K+GGNL +GSV ++F G + F ++ +++ AL+ GA+D + + D I +I
Sbjct: 115 HAFSKHGGNLGTDGSVAYLFNKQGFISFTSG-NEDQIMEAALDAGADDIITNDDGSIDVI 173
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P F +K++L G +A S + M P T + +A K +L++ L+ L D ++VY
Sbjct: 174 TTPEDFFTVKDALSDVGLEASHSEVTMEPATRVELNLQDAEKFMRLIDRLEDLDDTQEVY 233
Query: 236 TNALIFD 242
NA I D
Sbjct: 234 HNADISD 240
>gi|26987949|ref|NP_743374.1| hypothetical protein PP_1214 [Pseudomonas putida KT2440]
gi|148546486|ref|YP_001266588.1| hypothetical protein Pput_1243 [Pseudomonas putida F1]
gi|395447685|ref|YP_006387938.1| hypothetical protein YSA_07508 [Pseudomonas putida ND6]
gi|397698455|ref|YP_006536338.1| hypothetical protein T1E_5723 [Pseudomonas putida DOT-T1E]
gi|421524132|ref|ZP_15970758.1| hypothetical protein PPUTLS46_19901 [Pseudomonas putida LS46]
gi|33517008|sp|Q88NJ3.1|Y1214_PSEPK RecName: Full=Probable transcriptional regulatory protein PP_1214
gi|24982661|gb|AAN66838.1|AE016312_9 conserved hypothetical protein TIGR01033 [Pseudomonas putida
KT2440]
gi|148510544|gb|ABQ77404.1| protein of unknown function DUF28 [Pseudomonas putida F1]
gi|388561682|gb|AFK70823.1| hypothetical protein YSA_07508 [Pseudomonas putida ND6]
gi|397335185|gb|AFO51544.1| UPF0082 protein [Pseudomonas putida DOT-T1E]
gi|402752095|gb|EJX12603.1| hypothetical protein PPUTLS46_19901 [Pseudomonas putida LS46]
Length = 248
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 157/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKVFTKWIRELTVAAKQGGPDPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P +++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVEEDALMEAAMEADADDVVANDDGSFDVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|88705603|ref|ZP_01103313.1| protein containing DUF28 [Congregibacter litoralis KT71]
gi|88700116|gb|EAQ97225.1| protein containing DUF28 [Congregibacter litoralis KT71]
Length = 248
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+++REL VA G P+ N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKMFTKLIRELVVAAKQGGPLPEDNPRLRAAVDKALGSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + N NE + E+ YEGY+ G A++V+ +T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTIDRAIARGAGN--NEADDVEELTYEGYAPGGVAVLVEVMTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T + +++ ALE GAED D I + T+
Sbjct: 119 KRGGNLGTDGSVAYLFERKGQISFAPGTDEEQVMEAALEAGAEDVEAADDGSIEVTTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K +LE +G + S + M T + A + L++ L++L DV+ VY+N
Sbjct: 179 DLSAVKTTLEASGLEPAESEVTMIASTTVPVDASGAETVMGLIDALEELDDVQNVYSNVD 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|447918085|ref|YP_007398653.1| hypothetical protein H045_15460 [Pseudomonas poae RE*1-1-14]
gi|445201948|gb|AGE27157.1| hypothetical protein H045_15460 [Pseudomonas poae RE*1-1-14]
Length = 248
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ +LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRTALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|227111610|ref|ZP_03825266.1| hypothetical protein PcarbP_01535 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227329755|ref|ZP_03833779.1| hypothetical protein PcarcW_21418 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|403058263|ref|YP_006646480.1| hypothetical protein PCC21_018240 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805589|gb|AFR03227.1| hypothetical protein PCC21_018240 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 247
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G KAES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGDVKDALDAAGLKAESAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|153875113|ref|ZP_02003050.1| protein containing DUF28 [Beggiatoa sp. PS]
gi|152068422|gb|EDN66949.1| protein containing DUF28 [Beggiatoa sp. PS]
Length = 248
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ ++ G +N +LR AI+ AL +N
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKLFTKLIREITISARMGGGEAASNPRLRAAIDNALVSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ EN Y E+ YEGY G A++VDC+T+NR RTV+ IR+ F+
Sbjct: 61 MTKDTIERAIKRGAGTQDAEN--YEEITYEGYGPGGVAVMVDCMTDNRNRTVAEIRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F+ G L F + ++ ++++ALE GA+D + + D+ I ++T
Sbjct: 119 KHGGNLGTDGSVAYLFEKVGLLSFPSGSDEDHIMEIALEAGAQDVVHNDDDSIDVLTLSE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K+++E + I MR TN A K+ L N L+ L DV+ VY+NA
Sbjct: 179 DFYQVKDAMEKAKLMPTQAEITMRASTNTTLDLDNASKMVNLFNRLEDLDDVQTVYSNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|308049719|ref|YP_003913285.1| hypothetical protein Fbal_2008 [Ferrimonas balearica DSM 9799]
gi|307631909|gb|ADN76211.1| protein of unknown function DUF28 [Ferrimonas balearica DSM 9799]
Length = 248
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL V A G++ D N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVSAREGGSDADANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ ++ + + I YEGY G A++V+ +T+NR RTVS +R+ F+
Sbjct: 61 MTRDTIERAVKRGAGELEGQELETI--IYEGYGPGGTAVMVETMTDNRNRTVSGVRSAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + P T + ++D ALE GAED D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYLFTKQGVISYEPGTDEEAVMDAALEAGAEDVETSDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G A ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 179 AFGFVKDALDAAGLTAVNAEVTMVPSTKAELDLDTAQKFLRLIDVLEDHDDVQEVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|120598880|ref|YP_963454.1| hypothetical protein Sputw3181_2072 [Shewanella sp. W3-18-1]
gi|120558973|gb|ABM24900.1| protein of unknown function DUF28 [Shewanella sp. W3-18-1]
Length = 248
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRIAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P ++ L++ ALE GAED + D + + T+P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGIDEDALMEAALEAGAEDIISYDDGAVDVFTNPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYTVKELLDKAHFVADNAEIAMIASTKAELHLETAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|146293034|ref|YP_001183458.1| hypothetical protein Sputcn32_1936 [Shewanella putrefaciens CN-32]
gi|386313811|ref|YP_006009976.1| hypothetical protein [Shewanella putrefaciens 200]
gi|145564724|gb|ABP75659.1| protein of unknown function DUF28 [Shewanella putrefaciens CN-32]
gi|319426436|gb|ADV54510.1| protein of unknown function DUF28 [Shewanella putrefaciens 200]
Length = 248
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR+AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRIAIDKALGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ ++ + + I YEGY G A++V+ +T+NR RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELEGQQLETI--LYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L + P ++ L++ ALE GAED + D + + T P
Sbjct: 119 KSGGNLGTDGSVSYLFTKRGVLSYAPGIDEDALMEAALEAGAEDIISYDDGAVDVFTDPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K L+ F A+++ I M T A K +L++ L+ DV++VY NA
Sbjct: 179 DFYTVKELLDKAHFVADNAEIAMIASTKAELDLETAEKFMRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|440231175|ref|YP_007344968.1| DNA-binding regulatory protein, YebC/PmpR family [Serratia
marcescens FGI94]
gi|440052880|gb|AGB82783.1| DNA-binding regulatory protein, YebC/PmpR family [Serratia
marcescens FGI94]
Length = 247
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD+N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI++DC+++NR RTV+ +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGTAIMIDCLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++++++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITFAPGLDEDSVMEAALEAGAEDIVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++L GF AE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALASAGFTAEAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|323498743|ref|ZP_08103731.1| hypothetical protein VISI1226_19926 [Vibrio sinaloensis DSM 21326]
gi|323316210|gb|EGA69233.1| hypothetical protein VISI1226_19926 [Vibrio sinaloensis DSM 21326]
Length = 248
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + +E + V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDEGMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ G + + ++ ++++ALE GA+D +D I + T+P+
Sbjct: 119 KAGGNLGTDGSVSYLFEKKGVISYASGLDEDDVMEVALESGADDIETSEDGAIDVFTTPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GFK+ + + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGGVKDALDAAGFKSAHAEVSLIPSTKADLDADTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|389682241|ref|ZP_10173584.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
chlororaphis O6]
gi|399010021|ref|ZP_10712400.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM17]
gi|425901132|ref|ZP_18877723.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388554115|gb|EIM17365.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
chlororaphis O6]
gi|397883847|gb|EJL00334.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398108045|gb|EJL98032.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM17]
Length = 248
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAARQGGGEPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + + +N+ E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAIARGAGATEADNVE--ELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L D ALE A+D ++ +D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALTDAALEADADDVVVHEDGSIDVFTSFT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEEAGFKGDDAEIVMQPTTSAELDLEGAEKILKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|253688204|ref|YP_003017394.1| hypothetical protein PC1_1817 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259646497|sp|C6DFE9.1|Y1817_PECCP RecName: Full=Probable transcriptional regulatory protein PC1_1817
gi|251754782|gb|ACT12858.1| protein of unknown function DUF28 [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 247
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G KAES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGNVKDALDAAGLKAESAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|251789860|ref|YP_003004581.1| hypothetical protein Dd1591_2260 [Dickeya zeae Ech1591]
gi|247538481|gb|ACT07102.1| protein of unknown function DUF28 [Dickeya zeae Ech1591]
Length = 247
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T
Sbjct: 119 KCGGNLGTDGSVSYLFSKKGVISYAPGLDEDTVMDAALEAGADDVVSYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 SFGQVKDALDAAGLVAESAEVSMIPSTKADMDADTAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|148263484|ref|YP_001230190.1| hypothetical protein Gura_1416 [Geobacter uraniireducens Rf4]
gi|189038690|sp|A5G9Y5.1|Y1416_GEOUR RecName: Full=Probable transcriptional regulatory protein Gura_1416
gi|146396984|gb|ABQ25617.1| protein of unknown function DUF28 [Geobacter uraniireducens Rf4]
Length = 247
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 154/238 (64%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGKI T++++E+ VA G +P+ N +LR AI+KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKIFTKLIKEITVAAKLGGGDPEGNPRLRTAIDKAKGEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + + Y E YEGY GAA++V+ +T+NR RTVS++R+IF
Sbjct: 61 MPKDNIERAIKKGTGGM--DGVVYEETTYEGYGPGGAAVLVEVMTDNRNRTVSDVRSIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V +MF G ++F + + L + A+E GAED + D++ +I + T P
Sbjct: 119 KCNGNMGESGCVSWMFDKKGLMVFPKSVDFDKLFEAAIEAGAED-VSDEEEQIEVTTDPV 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F+E++++LE GFK ES+ + M P T + + +A + KL++ ++ DV+ VY N
Sbjct: 178 SFMEVRDTLEKAGFKPESAEVTMIPQTMVKLEGKQAENMLKLMDRMEDNDDVQNVYAN 235
>gi|117618272|ref|YP_856060.1| hypothetical protein AHA_1522 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166231395|sp|A0KIF9.1|Y1522_AERHH RecName: Full=Probable transcriptional regulatory protein AHA_1522
gi|117559679|gb|ABK36627.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 246
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ + G+ +P N +LR A+ AL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVAAALTGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ E + I YEGY G+A++V+C+T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGGDGEQLETI--VYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G L F+ ++ L+D ALE GA+D + ++D I + T+P+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGLLTFV-GVDEDALMDAALEAGADDVVTEEDGSIEVYTTPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + LE GFK +S+ + M P T A KL +L++ L+ L DV++VY N
Sbjct: 178 DFGTVLDGLEAAGFKPQSAEVTMIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVYHNGS 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|383189676|ref|YP_005199804.1| YebC/PmpR family DNA-binding regulatory protein [Rahnella aquatilis
CIP 78.65 = ATCC 33071]
gi|371587934|gb|AEX51664.1| DNA-binding regulatory protein, YebC/PmpR family [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
Length = 247
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G+AI+V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDTNMETIIYEGYGPGGSAIMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ L++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVITFAPGLDEDVLMEAALEAGAEDIISYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++LE G+KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALEAAGYKADSAEVTMIPSTKADMDADTAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|85059237|ref|YP_454939.1| hypothetical protein SG1259 [Sodalis glossinidius str. 'morsitans']
gi|119391251|sp|Q2NTJ1.1|Y1259_SODGM RecName: Full=Probable transcriptional regulatory protein SG1259
gi|84779757|dbj|BAE74534.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 247
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDVGSNPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + + I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGGDDAQMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++T++D ALE GA+D + D I + T+P
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVISFAPGLSEDTIMDAALEAGADDVITYDDGAIDVYTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++LE G E+S + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 AFGEVKDALEAAGLTPEASEVALVPSTRTDLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|444921761|ref|ZP_21241592.1| Putative transcriptional regulatory protein [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507139|gb|ELV07320.1| Putative transcriptional regulatory protein [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 248
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 148/245 (60%), Gaps = 10/245 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN--PDTNIKLRLAIEKALDA 58
MAGHSKWANI+ +K DAKRGKI TR++RE+ +A N P +N +LRLA++KAL
Sbjct: 1 MAGHSKWANIQHRKGAQDAKRGKIFTRLIREITIATRMAGNGDPASNPRLRLAMDKALSN 60
Query: 59 NIPKNNIFRAIQKN---NSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115
N+ K+ + RAI++ +S+ E E+RYEGY G A++VDC+T+NR RT +R
Sbjct: 61 NMSKDTMERAIKRGLGGDSDSAQE-----EIRYEGYGPGGVAVMVDCVTDNRNRTAGEVR 115
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+ F K GGNL GSV F F G L + ++ + D A+E GA+D +++ D I ++
Sbjct: 116 HAFTKCGGNLGVSGSVAFQFTETGVLSYPEGADEDAITDAAIEAGADDIVVNDDTSIDVL 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P + + N + G + E S + MR N+ +A ++ K+L+ L+ L D + VY
Sbjct: 176 TTPQNYATVYNFMVEKGLEPEESEVTMRAANNVALSLDDAKQMIKMLDMLENLDDTQNVY 235
Query: 236 TNALI 240
+NA I
Sbjct: 236 SNADI 240
>gi|322832433|ref|YP_004212460.1| hypothetical protein Rahaq_1715 [Rahnella sp. Y9602]
gi|384257545|ref|YP_005401479.1| hypothetical protein Q7S_08360 [Rahnella aquatilis HX2]
gi|321167634|gb|ADW73333.1| protein of unknown function DUF28 [Rahnella sp. Y9602]
gi|380753521|gb|AFE57912.1| hypothetical protein Q7S_08360 [Rahnella aquatilis HX2]
Length = 247
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G+AI+V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDTNMETIIYEGYGPGGSAIMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ L++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVITFAPGLDEDVLMEAALEAGAEDIISYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++LE G+KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALEAAGYKADSAEVTMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|167623849|ref|YP_001674143.1| hypothetical protein Shal_1919 [Shewanella halifaxensis HAW-EB4]
gi|167353871|gb|ABZ76484.1| protein of unknown function DUF28 [Shewanella halifaxensis HAW-EB4]
Length = 247
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR AI+K+L N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKVFTKFIRELTVAAREGGSDPDSNPRLRAAIDKSLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELDGQVLETI--IYEGYGPGGTAVLVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G ++ ++T++D ALE GAED + +D I ++TSP
Sbjct: 119 KSGGNLGTDGSVAYLFDKKG-IISYEGIDEDTVMDAALEAGAEDVVTHEDGSIDVLTSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G ++ ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 178 DFGSVKDALDAAGLESINAEVTMVPSTKADLDASTAPKFLRLIDNLEDHDDVQEVYHNAE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|262037457|ref|ZP_06010917.1| conserved hypothetical protein TIGR01033 [Leptotrichia goodfellowii
F0264]
gi|261748492|gb|EEY35871.1| conserved hypothetical protein TIGR01033 [Leptotrichia goodfellowii
F0264]
Length = 249
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 152/245 (62%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D +RGK TR+ +EL +A G N D N +LRLAI+KA AN
Sbjct: 1 MAGHSKWANIQHRKGRQDKQRGKAFTRLGKELMIAARIGGGNVDFNPRLRLAIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K + E ++YIE+RYEGY G A +VD +T+N+ R+ S +R F+
Sbjct: 61 MPKDTIERAIKKGTGEL--EGVDYIEIRYEGYGPGGIAFLVDVVTDNKNRSASTVRMNFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+N GNL + GSV FMF G F + L+++ALE GAED + DK+N + +IT P
Sbjct: 119 RNDGNLGETGSVAFMFDRKGIFEFEKGKVDEEKLMEIALEAGAED-VADKENSLVVITDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+ F +K +LE G K E + I M P I D E A K+ KL ++L+ DV+++Y N
Sbjct: 178 NDFETVKETLEKEGLKTEEAEITMYPQNEIDITDTETATKILKLYDDLEDNEDVQEIYAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FNISD 242
>gi|384085949|ref|ZP_09997124.1| hypothetical protein AthiA1_10639 [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 250
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 155/243 (63%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK + DAKRGKI TR++RE+ VA G +P +N +LRLA++KA AN
Sbjct: 1 MSGHSKWSTIKFKKALKDAKRGKIFTRLIREITVAARAGGGDPGSNSRLRLALDKAYGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+++ + E ++Y EV YEGY G AI+++ +T+N++RTV+ IR+IF+
Sbjct: 61 MTKDTIERAVKRGTGEL--EGVDYEEVTYEGYGPAGVAILIETMTDNKVRTVAEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGN+ GSV + FK G + F + ++ +L+ ALE GAED ++++ +I + T+ +
Sbjct: 119 KRGGNMGTAGSVAYQFKKLGLIAFPGDADEDKILEAALEAGAED-VVNEGERIAVYTAAT 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +LE G + E S + M P I EA KL +L++ L++ DV+ VY N
Sbjct: 178 DLHSVVQALEAAGLQPEESELTMIPENTIEVSGEEAEKLLRLIDFLEENDDVQNVYANYE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|284007616|emb|CBA73233.1| conserved hypothetical protein [Arsenophonus nasoniae]
Length = 255
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 9 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAASNPRLRAAIDKALSNN 68
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + +N+N+ I YEGY G A++V+C+++NR RTVS++R+ F
Sbjct: 69 MTRDTLNRAIARGVGSDENDNLETI--IYEGYGPGGTAVMVECLSDNRNRTVSDVRHAFT 126
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++L++ ALE GA+D D I I T+
Sbjct: 127 KCGGNLGTDGSVAYLFTKRGVISYAPGIDEDSLMEAALEAGADDVESYDDGAIDIYTTLE 186
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ TGFKAE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 187 NFGSVKDALDATGFKAEAAEVTMIPSTKANLDADTAPKLLRLIDMLEDSDDVQEVYHNGE 246
Query: 240 IFD 242
I D
Sbjct: 247 ISD 249
>gi|333899723|ref|YP_004473596.1| hypothetical protein Psefu_1526 [Pseudomonas fulva 12-X]
gi|333114988|gb|AEF21502.1| UPF0082 protein yeeN [Pseudomonas fulva 12-X]
Length = 248
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LRLA++KAL N
Sbjct: 1 MAGHSKWANIKHRKGRQDAKRGKIFTKLIRELTVAAKHGGPIPADNPRLRLAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + N NE N +E YEGY+ +G AIIV+ +T+NR RT + +R+ F
Sbjct: 61 MSRDVIDRAIARGAGN--NEADNVVEFSYEGYAPSGVAIIVEVMTDNRNRTAAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF+ GQ+ F + ++ L++ ALE GA+D + ++ + TS +
Sbjct: 119 KCGGNLGTDGSVAYMFERKGQISF-ASVDEDALMEAALEAGADDVEMGEEGAALVSTSFT 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
+F + SL GFKAE + I M P + D E A K+ KL++ L+ L DV+ VY NA
Sbjct: 178 EFHAVNESLAAAGFKAEEAEIAMIPSISAPITDLETAQKVFKLIDMLEDLDDVQSVYHNA 237
Query: 239 LIFD 242
+ D
Sbjct: 238 EVSD 241
>gi|397666910|ref|YP_006508447.1| hypothetical protein LPV_1399 [Legionella pneumophila subsp.
pneumophila]
gi|395130321|emb|CCD08559.1| conserved protein of unknown function [Legionella pneumophila
subsp. pneumophila]
Length = 247
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 159/239 (66%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ + E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F+
Sbjct: 61 MKRDTIDNAVKRGVGGVDGEAM--IAMRYEGYGPGGVAILVDCLSDNKNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L N ++ ++++A++ GA D ++ D++I IIT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGASDVAVE-DSQIEIITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L+ G + E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHTVLNALQDAGLEVEQSHLTMRAQTLVPISDETAESLIKLIDMLEDLDDVQEVYSNA 236
>gi|411009970|ref|ZP_11386299.1| hypothetical protein AaquA_09592 [Aeromonas aquariorum AAK1]
gi|423195990|ref|ZP_17182573.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas
hydrophila SSU]
gi|404632791|gb|EKB29393.1| YebC/PmpR family DNA-binding regulatory protein [Aeromonas
hydrophila SSU]
Length = 246
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ + G+ +P N +LR A+ AL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVAAALTSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + E + I YEGY G+A++V+C+T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTINRAIARGAGGGDGEQLETI--VYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G L F+ ++ L+D ALE GA+D + ++D I + T+P+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVLTFV-GADEDALMDAALEAGADDVVTEEDGTIEVYTTPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + LE GFK ES+ + M P T A KL +L++ L+ L DV++VY N
Sbjct: 178 DFGTVLDGLEAAGFKPESAEVTMIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVYHNGS 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|330445530|ref|ZP_08309182.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489721|dbj|GAA03679.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 248
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSK+ANIK +K DAKRGKI T+++RE+ VA G D N +LR AI+KAL N
Sbjct: 1 MAGHSKFANIKHRKAAQDAKRGKIFTKLIREITVAAKEGGGEIDNNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +E + V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTINRAVTRGAGGEGDEGVET--VIYEGYGPAGTAVMVECLTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + +++ ++++ALE GA+D + D I + T+PS
Sbjct: 119 KAGGNLGTDGSVSYLFDKKGVISYAAGLEEDAVMEVALESGADDIETNDDGSIDVYTTPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF AE++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGSVKDALDAAGFTAENAEVTLVPSTKAELDATTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
+ D
Sbjct: 239 MSD 241
>gi|398868773|ref|ZP_10624166.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM78]
gi|398232465|gb|EJN18427.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM78]
Length = 248
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAQGVDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYAVRNALEAAGFKGDDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|334704301|ref|ZP_08520167.1| hypothetical protein AcavA_09703 [Aeromonas caviae Ae398]
Length = 246
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ + G+ +P N +LR A+ AL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVAAALTSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + E + I YEGY G+A++V+C+T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTINRAIARGAGGGDGEQLETI--VYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G L F+ ++ L+D ALE GA+D + ++D I + T+P+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVLTFV-GADEDALMDAALEAGADDVVTEEDGTIEVYTTPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + LE GFK ES+ + M P T A KL +L++ L+ L DV++VY N
Sbjct: 178 DFGTVLDGLEAAGFKPESAEVTMIPSTEAELDAETAPKLMRLIDMLEDLDDVQEVYHNGS 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|317491785|ref|ZP_07950220.1| hypothetical protein HMPREF0864_00983 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920219|gb|EFV41543.1| hypothetical protein HMPREF0864_00983 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 248
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G+AI+V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DDDTNMETIIYEGYGPGGSAIMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDTVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ G AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGLVAESAEVSMIPSTKAEMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
+ D
Sbjct: 239 VSD 241
>gi|238919500|ref|YP_002933015.1| conserved hypothetical protein TIGR01033 [Edwardsiella ictaluri
93-146]
gi|259646443|sp|C5B9S9.1|Y1596_EDWI9 RecName: Full=Probable transcriptional regulatory protein
NT01EI_1596
gi|238869069|gb|ACR68780.1| conserved hypothetical protein TIGR01033 [Edwardsiella ictaluri
93-146]
Length = 248
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDGNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVYTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGQVKDALDAAGLVAESAEVSMIPSTQADMDADTAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|170726920|ref|YP_001760946.1| hypothetical protein Swoo_2574 [Shewanella woodyi ATCC 51908]
gi|169812267|gb|ACA86851.1| protein of unknown function DUF28 [Shewanella woodyi ATCC 51908]
Length = 248
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++ D N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDADANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELDGQVLETI--MYEGYGPGGTAVMVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + ++T++D ALE GA+D + D I + T+P
Sbjct: 119 KSGGNLGTDGSVSYLFDKRGVISYGEGIDEDTIMDAALEAGADDVVTHDDGSIDVFTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF++ ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 179 DFGGVKDALDSAGFESVNAEVTMIPSTKADLDASTAPKFMRLIDNLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|110833611|ref|YP_692470.1| hypothetical protein ABO_0750 [Alcanivorax borkumensis SK2]
gi|118574398|sp|Q0VRK0.1|Y750_ALCBS RecName: Full=Probable transcriptional regulatory protein ABO_0750
gi|110646722|emb|CAL16198.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 247
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGGEPNDNPRLRAAIDKALGQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ + +++ E+ YEGY G A++V+ +T+N RTV+ +R+ F+
Sbjct: 61 MTRDTIDRAVKRGAGGDDDGSMD--EITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV F+F G++ F P + L+++ALE GAED D+ +IT+P
Sbjct: 119 KFGGNLGTSGSVAFLFTKRGEIFFEPGVDEEKLMEVALEAGAEDVEEMGDDGFLVITTPD 178
Query: 180 K-FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
K F E+ +SL G + + + M P T A +QK+++ L+ L DV+ VYTNA
Sbjct: 179 KSFGEVVDSLRAAGLEFAEAEVTMHPSTEAEMDTDTAETVQKMIDMLEDLDDVQNVYTNA 238
>gi|157962186|ref|YP_001502220.1| hypothetical protein Spea_2365 [Shewanella pealeana ATCC 700345]
gi|157847186|gb|ABV87685.1| protein of unknown function DUF28 [Shewanella pealeana ATCC 700345]
Length = 247
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 155/243 (63%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++PD+N +LR AI+K+L N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKSLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELDGQVLETI--IYEGYGPGGTAVLVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G ++ ++T++D ALE GAED + ++D I ++TSP
Sbjct: 119 KSGGNLGTDGSVAYLFDKKG-IISYEGVDEDTVMDAALEAGAEDVVTNEDGSIDVLTSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G ++ ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 178 DFGRVKDALDNAGLESVNAEVTMVPSTKADLDADTAPKFLRLIDNLEDHDDVQEVYHNAE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|50121419|ref|YP_050586.1| hypothetical protein ECA2494 [Pectobacterium atrosepticum SCRI1043]
gi|60390895|sp|Q6D499.1|Y2494_ERWCT RecName: Full=Probable transcriptional regulatory protein ECA2494
gi|49611945|emb|CAG75394.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 247
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DDDTNMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T+++ ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDTVMNAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G KAES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGDVKDALDAAGLKAESAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|307130885|ref|YP_003882901.1| hypothetical protein Dda3937_01618 [Dickeya dadantii 3937]
gi|306528414|gb|ADM98344.1| conserved protein [Dickeya dadantii 3937]
Length = 247
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T
Sbjct: 119 KCGGNLGTDGSVSYLFTKKGVISYAPGLDEDTVMDAALEAGADDVVSYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 SFGQVKDALDAAGLVAESAEVSMIPSTKADMDADTAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|52841517|ref|YP_095316.1| hypothetical protein lpg1286 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378777151|ref|YP_005185588.1| protein YebC [Legionella pneumophila subsp. pneumophila ATCC 43290]
gi|67462033|sp|Q5ZW02.1|Y1286_LEGPH RecName: Full=Probable transcriptional regulatory protein lpg1286
gi|52628628|gb|AAU27369.1| YebC [Legionella pneumophila subsp. pneumophila str. Philadelphia
1]
gi|364507965|gb|AEW51489.1| YebC [Legionella pneumophila subsp. pneumophila ATCC 43290]
Length = 247
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 158/239 (66%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ + E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F+
Sbjct: 61 MKRDTIDNAVKRGVGGVDGEAM--IAMRYEGYGPGGVAILVDCLSDNKNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L N ++ ++++A++ GA D ++ D +I IIT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGASDVAVE-DGQIEIITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L+ G + E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHTVLNALQDAGLEVEQSHLTMRAQTLVPINDETAESLIKLIDMLEDLDDVQEVYSNA 236
>gi|253699569|ref|YP_003020758.1| hypothetical protein GM21_0933 [Geobacter sp. M21]
gi|259710172|sp|C6E1T1.1|Y933_GEOSM RecName: Full=Probable transcriptional regulatory protein GM21_0933
gi|251774419|gb|ACT17000.1| protein of unknown function DUF28 [Geobacter sp. M21]
Length = 247
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 151/238 (63%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGKI T+I++E+ VA G +PD N +LR AI+KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKIFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + E Y E YEGY G A++V+ +T+NR RTVS++R+IF
Sbjct: 61 MPKDNVERAIKKGVGGL--EGTTYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V ++F G L+F + + L + ++E GA+D + D+D + ++T PS
Sbjct: 119 KCNGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGADD-VTDEDEQYEVLTDPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++K +LE GFKAES+ I M P T + + A + KL++ ++ DV+ VY N
Sbjct: 178 AFHQVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYAN 235
>gi|421528496|ref|ZP_15975058.1| hypothetical protein PPS11_09429 [Pseudomonas putida S11]
gi|402214033|gb|EJT85368.1| hypothetical protein PPS11_09429 [Pseudomonas putida S11]
Length = 248
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKRGKIFTKWIRELTVAAKQGGADPASNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NE+ N E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MSRDIIDRAVARGAGT--NESDNVEELSYEGYGPGGVAIMVEAMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F +++ L++ A+E A+D + + D + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFASGVEEDALMEAAMEADADDVVANDDGSFDVFTSFN 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFKA + IVM+P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEEAGFKAADAEIVMQPTTSAELDQDGAEKVLKLIDMLEDLDDVQNVYSNAQ 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|147677359|ref|YP_001211574.1| hypothetical protein PTH_1024 [Pelotomaculum thermopropionicum SI]
gi|189038544|sp|A5D3F8.1|Y1024_PELTS RecName: Full=Probable transcriptional regulatory protein PTH_1024
gi|146273456|dbj|BAF59205.1| uncharacterized conserved protein [Pelotomaculum thermopropionicum
SI]
Length = 243
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 156/246 (63%), Gaps = 7/246 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK VDA+RGKI TR+ RE+ VA G +P++N++L+ AI++A +AN
Sbjct: 1 MSGHSKWSTIKRKKAKVDAQRGKIFTRLAREIIVAARQGGGDPESNVRLKAAIQRAKEAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAIQK + NY E+ YEGY GAA++++ +T+NR RT IR+IF
Sbjct: 61 VPNENIMRAIQKGTGELGG--ANYEEIIYEGYGPGGAAVMIEIMTDNRNRTAGEIRHIFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL---PNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + G V +MF+ G ++ +++L+ LALE GA+DF ++D+ I T
Sbjct: 119 RNGGSLGETGCVAWMFEEKGLIVVEKKGSEPDEDSLMLLALEAGADDFKAEEDS-YEITT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P +++ +LE G K + + M P T + + +A ++ +L++ L++ DV+ VY
Sbjct: 178 APGDLQKVRGALEGAGVKIALAEVAMIPQTTVKLEGDDAERMTRLVDALEEHDDVQNVYA 237
Query: 237 NALIFD 242
N I D
Sbjct: 238 NYEIED 243
>gi|291617756|ref|YP_003520498.1| YebC [Pantoea ananatis LMG 20103]
gi|378766926|ref|YP_005195391.1| hypothetical protein PANA5342_1961 [Pantoea ananatis LMG 5342]
gi|386016108|ref|YP_005934393.1| hypothetical protein PAJ_1517 [Pantoea ananatis AJ13355]
gi|386079102|ref|YP_005992627.1| hypothetical protein [Pantoea ananatis PA13]
gi|291152786|gb|ADD77370.1| YebC [Pantoea ananatis LMG 20103]
gi|327394175|dbj|BAK11597.1| UPF0082 protein YebC [Pantoea ananatis AJ13355]
gi|354988283|gb|AER32407.1| conserved hypothetical protein YebC [Pantoea ananatis PA13]
gi|365186404|emb|CCF09354.1| hypothetical protein PANA5342_1961 [Pantoea ananatis LMG 5342]
Length = 247
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G+AI+++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGSAIMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISFAPGHDEDAVMEAALEAGAEDVVGYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE GFKA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGTVRDALEAAGFKADSAEVAMIPSTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|90580114|ref|ZP_01235922.1| hypothetical protein VAS14_18051 [Photobacterium angustum S14]
gi|90438999|gb|EAS64182.1| hypothetical protein VAS14_18051 [Photobacterium angustum S14]
Length = 248
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 153/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSK+ANIK +K DAKRGKI T+++RE+ VA G+ P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKFANIKHRKAAQDAKRGKIFTKLIREITVAAKEGGSEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +E + V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTINRAVTRGAGGEGDEGVET--VIYEGYGPAGTAVMVECLTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + ++ ++++ALE GA+D + D I + T+P+
Sbjct: 119 KAGGNLGTDGSVSYLFDKKGVISYAAGLDEDAVMEVALESGADDIETNDDGSIEVYTTPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF AE++ + + P T A KL +L++ L+ L D+++VY N
Sbjct: 179 DFGSVKDALDAAGFTAENAEVTLVPSTKAELDVTTAPKLLRLIDALEDLDDIQEVYHNGD 238
Query: 240 IFD 242
+ D
Sbjct: 239 MSD 241
>gi|5771432|gb|AAD51398.1|AF117715_7 YebC [Legionella pneumophila]
Length = 238
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 158/239 (66%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ + E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F+
Sbjct: 61 MKRDTIDNAVKRGVGGVDGEAM--IAMRYEGYGPGGVAILVDCLSDNKNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L N ++ ++++A++ GA D ++ D +I IIT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGASDVAVE-DGQIEIITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L+ G + E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHTVLNALQDAGLEVEQSHLTMRAQTLVPINDETAESLIKLIDMLEDLDDVQEVYSNA 236
>gi|350559538|ref|ZP_08928378.1| protein of unknown function DUF28 [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349781806|gb|EGZ36089.1| protein of unknown function DUF28 [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 246
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 151/239 (63%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G +P +N +LRLA +KAL AN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIREITVAARAGGADPASNPRLRLATDKALAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA ++ + E Y EVRYEGY GAAI+VDC+T+NR RTV+++R+ F
Sbjct: 61 MTRDTIDRAAKRGAGAM--EGDAYEEVRYEGYGPGGAAILVDCMTDNRNRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ G + + T +++ ALE GAED +D+D I ++T P
Sbjct: 119 KTGGNLGTDGSVAYLFEKRGVIEYPAGTDDEKVMEAALEGGAEDVQVDEDGAIEVLTGPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F + +L G + E++ + MR T + A + KLLN L L DV+ VYTNA
Sbjct: 179 DFEPVLAALREHGLEPENAEVTMRAGTLAPLDEDTAQSVLKLLNMLDDLDDVQNVYTNA 237
>gi|261343865|ref|ZP_05971510.1| protein YebC [Providencia rustigianii DSM 4541]
gi|282568252|gb|EFB73787.1| protein YebC [Providencia rustigianii DSM 4541]
Length = 247
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDNDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GA+D D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGVDEDALMEAALEAGADDVETYDDGAIDVYTTFE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF +E++ + M P A KL +L++ L+ DV++VY N
Sbjct: 179 TFGAVKDALDAAGFTSEAAEVSMIPSITAELDVETAPKLMRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|54297204|ref|YP_123573.1| hypothetical protein lpp1249 [Legionella pneumophila str. Paris]
gi|397663721|ref|YP_006505259.1| hypothetical protein LPO_1271 [Legionella pneumophila subsp.
pneumophila]
gi|67462030|sp|Q5X5S1.1|Y1249_LEGPA RecName: Full=Probable transcriptional regulatory protein lpp1249
gi|53750989|emb|CAH12400.1| hypothetical protein lpp1249 [Legionella pneumophila str. Paris]
gi|307609998|emb|CBW99530.1| hypothetical protein LPW_13011 [Legionella pneumophila 130b]
gi|395127132|emb|CCD05320.1| conserved protein of unknown function [Legionella pneumophila
subsp. pneumophila]
Length = 247
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 158/239 (66%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F+
Sbjct: 61 MKRDTIDNAVKRGVGGADGEAM--IAMRYEGYGPGGVAILVDCLSDNKNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L N ++ ++++A++ GA D ++ D++I IIT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGASDVAVE-DSQIEIITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L+ G + E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHTVLNALQDAGLEVEQSHLTMRAQTLVPISDETAESLIKLIDMLEDLDDVQEVYSNA 236
>gi|269138788|ref|YP_003295489.1| hypothetical protein ETAE_1437 [Edwardsiella tarda EIB202]
gi|387867467|ref|YP_005698936.1| hypothetical protein ETAF_1332 [Edwardsiella tarda FL6-60]
gi|267984449|gb|ACY84278.1| hypothetical protein ETAE_1437 [Edwardsiella tarda EIB202]
gi|304558780|gb|ADM41444.1| hypothetical protein ETAF_1332 [Edwardsiella tarda FL6-60]
Length = 264
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 17 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 76
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 77 MTRDTLNRAIARGVGGDDDGNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 134
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 135 KCGGNLGTDGSVAYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVYTPWE 194
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 195 TFGQVKDALDAAGLVAESAEVSMIPSTQADMDADTAPKLLRLIDMLEDCDDVQEVYHNGE 254
Query: 240 IFD 242
I D
Sbjct: 255 ISD 257
>gi|254876885|ref|ZP_05249595.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842906|gb|EET21320.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 248
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI A N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATAFANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI K +++ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTVERAILKGAGG--DDSANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F ++ L+++ALE GAED + +D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYMFTKKGIISFASGVDEDALMEVALEAGAEDIITHEDGSIDVFTTPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F +++ +L GF ++++ + T A K+ L++ L+ L DV+ VY+N
Sbjct: 179 DFSDVQEALIAKGFNSDNAEVTFDAETKAELDIEIAEKVMNLIDRLEDLDDVQNVYSN 236
>gi|385871615|gb|AFI90135.1| UPF0082 protein yebC [Pectobacterium sp. SCC3193]
Length = 247
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGIGG--DDDTNMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ TG KAE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGNVKDALDATGLKAEAAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|430762637|ref|YP_007218494.1| protein of unknown function DUF28 [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430012261|gb|AGA35013.1| protein of unknown function DUF28 [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 246
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 151/239 (63%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G +P +N +LRLA +KAL AN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIREITVAARAGGADPASNPRLRLATDKALAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ + E Y EVRYEGY GAAI+VDC+T+NR RTV+++R+ F
Sbjct: 61 MTRDTIDRAVKRGAGAM--EGDAYEEVRYEGYGPGGAAILVDCMTDNRNRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ G + + T +++ ALE GAED +D D I ++T P
Sbjct: 119 KTGGNLGTDGSVAYLFEKKGVIEYPAGTDDEKVMEAALEGGAEDVQVDDDGAIEVLTGPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F + +L G + E++ + MR T + A + KLLN L L DV+ VYTNA
Sbjct: 179 DFEPVLAALREHGVEPENAEVTMRAGTLAPLDEETAQSVLKLLNMLDDLDDVQNVYTNA 237
>gi|404495603|ref|YP_006719709.1| hypothetical protein Gmet_0743 [Geobacter metallireducens GS-15]
gi|418067852|ref|ZP_12705183.1| protein of unknown function DUF28 [Geobacter metallireducens RCH3]
gi|119369548|sp|Q39XN9.1|Y743_GEOMG RecName: Full=Probable transcriptional regulatory protein Gmet_0743
gi|78193218|gb|ABB30985.1| protein of unknown function DUF28 [Geobacter metallireducens GS-15]
gi|373558099|gb|EHP84461.1| protein of unknown function DUF28 [Geobacter metallireducens RCH3]
Length = 247
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 150/238 (63%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGK+ T+I++E+ VA G +P+ N +LR A++KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPNGNPRLRSAVDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E +NY E+ YEGY G A++V+C+T+NR RTV ++R+ F
Sbjct: 61 MPKDNIERAIKKGTGEL--EGVNYEEIVYEGYGPGGVAVLVECMTDNRNRTVGDVRSTFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V +MF G ++ + L ++ALE GAED + D++ + ++T PS
Sbjct: 119 KCNGNMGETGCVSWMFDKKGLIVVSKDADFEKLFEVALEAGAED-VADEEEQYEVLTDPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F+E++ +LE GF ES+ I M P T + A + KL++ L+ DV+ VY N
Sbjct: 178 SFMEVREALEKAGFAHESAEITMIPQTMVKLDGKNAENMLKLMDRLEDNDDVQNVYAN 235
>gi|212711938|ref|ZP_03320066.1| hypothetical protein PROVALCAL_03013 [Providencia alcalifaciens DSM
30120]
gi|212685460|gb|EEB44988.1| hypothetical protein PROVALCAL_03013 [Providencia alcalifaciens DSM
30120]
Length = 247
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDNDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GA+D D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGVDEDALMEAALEAGADDVETYDDGAIDVYTTFE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF +E++ + M P A KL +L++ L+ DV++VY N
Sbjct: 179 TFGAVKDALDAAGFTSEAAEVSMIPSITAELDVETAPKLMRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|384083301|ref|ZP_09994476.1| hypothetical protein gproHI_08296 [gamma proteobacterium HIMB30]
Length = 247
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 153/239 (64%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G P N +LR A++KAL AN
Sbjct: 1 MAGHSKWANIKHKKAAQDAKRGKIFTKLIREITVAAKMGGGEPADNPRLRAAVDKALSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI + N+N+ E+ YEGY G A++V+ +T+N+ RTV+ +R+ F+
Sbjct: 61 MTKDTIQRAIDRGAGGGDNDNVE--ELVYEGYGPGGVAVLVEVMTDNKNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+L + N ++ +++ AL+ GAED + D I + T+ +
Sbjct: 119 KCGGNLGTDGSVAYLFTKRGQIL-IDNADEDLVMEAALDAGAEDVIGQDDGLIDVATTQN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++K++L +G + S+ + + P T + A K+ KL++ L+ L DV+ VYTNA
Sbjct: 178 DVVDVKDALLASGIEIVSAEVALVPSTTAELDEESAPKVMKLIDMLEDLDDVQNVYTNA 236
>gi|169633711|ref|YP_001707447.1| hypothetical protein ABSDF2152 [Acinetobacter baumannii SDF]
gi|169796215|ref|YP_001714008.1| hypothetical protein ABAYE2155 [Acinetobacter baumannii AYE]
gi|184157856|ref|YP_001846195.1| hypothetical protein ACICU_01536 [Acinetobacter baumannii ACICU]
gi|213157051|ref|YP_002319096.1| hypothetical protein AB57_1731 [Acinetobacter baumannii AB0057]
gi|215483670|ref|YP_002325891.1| hypothetical protein ABBFA_001989 [Acinetobacter baumannii
AB307-0294]
gi|239502267|ref|ZP_04661577.1| hypothetical protein AbauAB_08130 [Acinetobacter baumannii AB900]
gi|260555277|ref|ZP_05827498.1| UPF0082 protein [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301346643|ref|ZP_07227384.1| hypothetical protein AbauAB0_10366 [Acinetobacter baumannii AB056]
gi|301512569|ref|ZP_07237806.1| hypothetical protein AbauAB05_13327 [Acinetobacter baumannii AB058]
gi|301594641|ref|ZP_07239649.1| hypothetical protein AbauAB059_02490 [Acinetobacter baumannii
AB059]
gi|332855487|ref|ZP_08435907.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013150]
gi|332866616|ref|ZP_08437103.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013113]
gi|332872497|ref|ZP_08440467.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6014059]
gi|384131951|ref|YP_005514563.1| hypothetical protein [Acinetobacter baumannii 1656-2]
gi|384142943|ref|YP_005525653.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236763|ref|YP_005798102.1| hypothetical protein ABTW07_1212 [Acinetobacter baumannii
TCDC-AB0715]
gi|385237274|ref|YP_005798613.1| hypothetical protein ABTW07_1724 [Acinetobacter baumannii
TCDC-AB0715]
gi|387124186|ref|YP_006290068.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii MDR-TJ]
gi|403676805|ref|ZP_10938686.1| hypothetical protein ANCT1_18745 [Acinetobacter sp. NCTC 10304]
gi|407932567|ref|YP_006848210.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii TYTH-1]
gi|416145905|ref|ZP_11600755.1| hypothetical protein AB210_0766 [Acinetobacter baumannii AB210]
gi|417543871|ref|ZP_12194957.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC032]
gi|417547611|ref|ZP_12198693.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-18]
gi|417553299|ref|ZP_12204369.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-81]
gi|417560855|ref|ZP_12211734.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC137]
gi|417565262|ref|ZP_12216136.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC143]
gi|417568224|ref|ZP_12219087.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC189]
gi|417572546|ref|ZP_12223400.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC-5]
gi|417578834|ref|ZP_12229667.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-17]
gi|417869776|ref|ZP_12514756.1| hypothetical protein ABNIH1_06420 [Acinetobacter baumannii ABNIH1]
gi|417873238|ref|ZP_12518114.1| hypothetical protein ABNIH2_04440 [Acinetobacter baumannii ABNIH2]
gi|417878620|ref|ZP_12523229.1| hypothetical protein ABNIH3_11253 [Acinetobacter baumannii ABNIH3]
gi|417883264|ref|ZP_12527518.1| hypothetical protein ABNIH4_12543 [Acinetobacter baumannii ABNIH4]
gi|421197871|ref|ZP_15655040.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC109]
gi|421204552|ref|ZP_15661673.1| dna-binding regulatory family [Acinetobacter baumannii AC12]
gi|421456106|ref|ZP_15905449.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-123]
gi|421536414|ref|ZP_15982660.1| transcriptional regulatory protein [Acinetobacter baumannii AC30]
gi|421622046|ref|ZP_16062956.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC074]
gi|421624767|ref|ZP_16065631.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC098]
gi|421629548|ref|ZP_16070280.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC180]
gi|421632780|ref|ZP_16073425.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-13]
gi|421645011|ref|ZP_16085485.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-235]
gi|421648607|ref|ZP_16089010.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-251]
gi|421652901|ref|ZP_16093249.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC0162]
gi|421653637|ref|ZP_16093970.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-72]
gi|421657141|ref|ZP_16097416.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-83]
gi|421661953|ref|ZP_16102123.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC110]
gi|421669903|ref|ZP_16109914.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC099]
gi|421676611|ref|ZP_16116518.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC065]
gi|421678618|ref|ZP_16118502.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC111]
gi|421687549|ref|ZP_16127270.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-143]
gi|421691100|ref|ZP_16130764.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-116]
gi|421696971|ref|ZP_16136550.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-692]
gi|421699766|ref|ZP_16139290.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-58]
gi|421703382|ref|ZP_16142845.1| hypothetical protein B825_08914 [Acinetobacter baumannii ZWS1122]
gi|421707105|ref|ZP_16146504.1| hypothetical protein B837_08480 [Acinetobacter baumannii ZWS1219]
gi|421791126|ref|ZP_16227310.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-2]
gi|421798438|ref|ZP_16234460.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-21]
gi|421798619|ref|ZP_16234636.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC1]
gi|421804890|ref|ZP_16240786.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-694]
gi|421809091|ref|ZP_16244931.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC035]
gi|424052617|ref|ZP_17790149.1| UPF0082 protein [Acinetobacter baumannii Ab11111]
gi|424060153|ref|ZP_17797644.1| UPF0082 protein [Acinetobacter baumannii Ab33333]
gi|425748810|ref|ZP_18866792.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-348]
gi|425751780|ref|ZP_18869722.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-113]
gi|445406606|ref|ZP_21431883.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-57]
gi|445458714|ref|ZP_21447254.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC047]
gi|445469619|ref|ZP_21451276.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC338]
gi|445475539|ref|ZP_21453429.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-78]
gi|445488780|ref|ZP_21458389.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii AA-014]
gi|226701115|sp|B7H3U3.1|Y1989_ACIB3 RecName: Full=Probable transcriptional regulatory protein
ABBFA_001989
gi|226701194|sp|B0VR58.1|Y2152_ACIBS RecName: Full=Probable transcriptional regulatory protein ABSDF2152
gi|226701197|sp|B0VC84.1|Y2155_ACIBY RecName: Full=Probable transcriptional regulatory protein ABAYE2155
gi|226734691|sp|B2HYW1.1|Y1536_ACIBC RecName: Full=Probable transcriptional regulatory protein
ACICU_01536
gi|226736434|sp|B7I4G5.1|Y1731_ACIB5 RecName: Full=Probable transcriptional regulatory protein AB57_1731
gi|169149142|emb|CAM87021.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
gi|169152503|emb|CAP01477.1| conserved hypothetical protein [Acinetobacter baumannii]
gi|183209450|gb|ACC56848.1| uncharacterized conserved protein [Acinetobacter baumannii ACICU]
gi|213056211|gb|ACJ41113.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213988098|gb|ACJ58397.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
gi|260411819|gb|EEX05116.1| UPF0082 protein [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|322508171|gb|ADX03625.1| Hypothetical protein ABK1_1991 [Acinetobacter baumannii 1656-2]
gi|323517260|gb|ADX91641.1| hypothetical protein ABTW07_1212 [Acinetobacter baumannii
TCDC-AB0715]
gi|323517772|gb|ADX92153.1| hypothetical protein ABTW07_1724 [Acinetobacter baumannii
TCDC-AB0715]
gi|332727461|gb|EGJ58891.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013150]
gi|332734490|gb|EGJ65603.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6013113]
gi|332739303|gb|EGJ70160.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii 6014059]
gi|333366464|gb|EGK48478.1| hypothetical protein AB210_0766 [Acinetobacter baumannii AB210]
gi|342229648|gb|EGT94507.1| hypothetical protein ABNIH1_06420 [Acinetobacter baumannii ABNIH1]
gi|342231945|gb|EGT96737.1| hypothetical protein ABNIH2_04440 [Acinetobacter baumannii ABNIH2]
gi|342232264|gb|EGT97044.1| hypothetical protein ABNIH3_11253 [Acinetobacter baumannii ABNIH3]
gi|342236161|gb|EGU00703.1| hypothetical protein ABNIH4_12543 [Acinetobacter baumannii ABNIH4]
gi|347593436|gb|AEP06157.1| conserve hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385878678|gb|AFI95773.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii MDR-TJ]
gi|395523437|gb|EJG11526.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC137]
gi|395554519|gb|EJG20521.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC189]
gi|395557018|gb|EJG23019.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC143]
gi|395566377|gb|EJG28020.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC109]
gi|395567972|gb|EJG28646.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-17]
gi|398325955|gb|EJN42112.1| dna-binding regulatory family [Acinetobacter baumannii AC12]
gi|400208114|gb|EJO39084.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC-5]
gi|400211204|gb|EJO42167.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-123]
gi|400381759|gb|EJP40437.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC032]
gi|400389360|gb|EJP52431.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-18]
gi|400393558|gb|EJP60604.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-81]
gi|404560704|gb|EKA65946.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-692]
gi|404563251|gb|EKA68461.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-116]
gi|404564349|gb|EKA69529.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-143]
gi|404571467|gb|EKA76527.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-58]
gi|404668105|gb|EKB36014.1| UPF0082 protein [Acinetobacter baumannii Ab33333]
gi|404672067|gb|EKB39909.1| UPF0082 protein [Acinetobacter baumannii Ab11111]
gi|407192176|gb|EKE63359.1| hypothetical protein B825_08914 [Acinetobacter baumannii ZWS1122]
gi|407192546|gb|EKE63723.1| hypothetical protein B837_08480 [Acinetobacter baumannii ZWS1219]
gi|407901148|gb|AFU37979.1| YebC/PmpR family DNA-binding regulatory protein [Acinetobacter
baumannii TYTH-1]
gi|408504025|gb|EKK05777.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-235]
gi|408504318|gb|EKK06069.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC0162]
gi|408512990|gb|EKK14628.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-72]
gi|408515441|gb|EKK17029.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii IS-251]
gi|408696560|gb|EKL42093.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC074]
gi|408700461|gb|EKL45912.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC098]
gi|408701534|gb|EKL46963.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC180]
gi|408707888|gb|EKL53167.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-13]
gi|408714283|gb|EKL59435.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-83]
gi|408715445|gb|EKL60573.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC110]
gi|409985665|gb|EKO41872.1| transcriptional regulatory protein [Acinetobacter baumannii AC30]
gi|410379678|gb|EKP32281.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC065]
gi|410386865|gb|EKP39327.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC099]
gi|410392181|gb|EKP44543.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC111]
gi|410394302|gb|EKP46638.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-21]
gi|410403622|gb|EKP55705.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-2]
gi|410410275|gb|EKP62189.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-694]
gi|410412610|gb|EKP64467.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Canada BC1]
gi|410414875|gb|EKP66667.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC035]
gi|425489791|gb|EKU56092.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-348]
gi|425499787|gb|EKU65818.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-113]
gi|444767616|gb|ELW91863.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii AA-014]
gi|444774281|gb|ELW98369.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC338]
gi|444775123|gb|ELW99193.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC047]
gi|444778878|gb|ELX02878.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-78]
gi|444781253|gb|ELX05172.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-57]
gi|452953459|gb|EME58878.1| hypothetical protein G347_04673 [Acinetobacter baumannii MSP4-16]
Length = 249
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G +P +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGVGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++D+ALE GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFDDVSLEDKIMDVALEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P T D +A ++ KL++ L+ L DV+ VYTN
Sbjct: 178 TFGEVQDALAAAGLKSDNAEVVMSPSTKAEITDIDQAKQVMKLIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|407006693|gb|EKE22535.1| hypothetical protein ACD_6C00791G0006 [uncultured bacterium]
Length = 249
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT--NIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +REL A G PDT N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIRELTTAAKLGG-PDTASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDVINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV F+F G++ F + ++ ++++ALE GAED + +D+ I +IT+P
Sbjct: 118 SKTDGNLGTNGSVAFLFTKRGEITFEDVSLEDQIMEVALEAGAEDIEVTEDD-ILVITTP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F E++++L G K++++ +VM P T D +A K+ K+++ L+ L DV+ VYTN
Sbjct: 177 EAFGEVQDALTAAGLKSDNAEVVMSPSTKAEITDIDQAKKIMKMIDMLEDLDDVQNVYTN 236
Query: 238 ALIFD 242
D
Sbjct: 237 VEFSD 241
>gi|148358828|ref|YP_001250035.1| hypothetical protein LPC_0711 [Legionella pneumophila str. Corby]
gi|296106873|ref|YP_003618573.1| YebC [Legionella pneumophila 2300/99 Alcoy]
gi|166228840|sp|A5IBD9.1|Y711_LEGPC RecName: Full=Probable transcriptional regulatory protein LPC_0711
gi|148280601|gb|ABQ54689.1| YebC [Legionella pneumophila str. Corby]
gi|295648774|gb|ADG24621.1| YebC [Legionella pneumophila 2300/99 Alcoy]
Length = 247
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 158/239 (66%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F+
Sbjct: 61 MKRDTIDNAVKRGVGGADGEAM--IAMRYEGYGPGGVAILVDCLSDNKNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L N ++ ++++A++ GA D ++ D+++ IIT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGASDVAVE-DSQVEIITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L+ G + E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHTVLNALQDAGLEVEQSHLTMRAQTLVPISDETAESLIKLIDMLEDLDDVQEVYSNA 236
>gi|354597873|ref|ZP_09015890.1| UPF0082 protein yeeN [Brenneria sp. EniD312]
gi|353675808|gb|EHD21841.1| UPF0082 protein yeeN [Brenneria sp. EniD312]
Length = 247
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KSGGNLGTDGSVAYLFSKKGVISYAPGLDEDRVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ G AE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGLVAEAAEVSMVPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|300717086|ref|YP_003741889.1| hypothetical protein EbC_25110 [Erwinia billingiae Eb661]
gi|299062922|emb|CAX60042.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
Length = 247
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F+
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ ++D ALE GA+D + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTRKGVITFAPGLAEDDVMDAALEAGADDIVTYDDGTIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++K++LE G KAES+ + M P T + A KL +L++ L+ DV++VY N
Sbjct: 179 TVGQVKDTLEAAGLKAESAEVTMIPSTKADMDEETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|383813564|ref|ZP_09968989.1| hypothetical protein SPM24T3_04382 [Serratia sp. M24T3]
gi|383297709|gb|EIC86018.1| hypothetical protein SPM24T3_04382 [Serratia sp. M24T3]
Length = 247
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ +++ ALE GA+D D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTKTGVITFAPGVDEDAIMEAALEAGADDVQTFDDGAIDVYTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++K++LE GFKA+ + + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 SVGDVKDALEAAGFKADQAEVTMIPSTKADMDADTAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|254516711|ref|ZP_05128770.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR5-3]
gi|219675134|gb|EED31501.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR5-3]
Length = 248
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+++REL VA G P+ N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKMFTKLIRELVVAAKQGGPLPEDNPRLRAAVDKALGSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI + N NE + E+ YEGY+ G A++V+ +T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTIDRAIARGAGN--NEADDVEELTYEGYAPGGVAVLVEVMTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P + +++ ALE GAED D I + T+
Sbjct: 119 KRGGNLGTDGSVAYLFERKGQISFAPGADEEQVMEAALEAGAEDIETADDGSIEVTTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K ++E G + + M T + A + L++ L++L DV+ VY+N
Sbjct: 179 DFSGVKAAMEEAGLEPADGEVTMVASTTVPVDASGAETVMGLIDALEELDDVQNVYSNVD 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|451812064|ref|YP_007448518.1| hypothetical protein ST1E_0484 [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451777966|gb|AGF48914.1| hypothetical protein ST1E_0484 [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 242
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 159/244 (65%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D K+GK+ T+I+RE+ VA G + ++N +LR A+ KA AN
Sbjct: 1 MAGHSKWANIQHRKNRQDEKKGKLWTKIIREITVAARNGVTDINSNFQLRAALGKASAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI +A+Q+ + E+ Y E+ YEGY + G+A +V +T+N+++T S IR+ F
Sbjct: 61 IPKDNINKALQRGSK----ESDGYEEINYEGYGIEGSAFVVKTLTDNKIKTASEIRHAFT 116
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KN GNL ++GSV F+F+ CG+ +F ++ + + ++ALE GAED + +N I + P
Sbjct: 117 KNSGNLGQDGSVSFLFRSCGKFIFSTASSSEENIFNIALEVGAEDVVKLDENTIEVTCLP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++I++ N+ + ESS I++ P + + IK+QKL+ +L+ L DV+ VYTNA
Sbjct: 177 EQYIKLCNAFDNAKIAIESSDIIIEPLITVKLNQEKYIKIQKLIMDLENLDDVQSVYTNA 236
Query: 239 LIFD 242
++ D
Sbjct: 237 VLAD 240
>gi|262368435|ref|ZP_06061764.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262316113|gb|EEY97151.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 249
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +REL A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKLFTKFIRELTTAAKLGGGDAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ E+ YEGY V G A+IV+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDVINRAIQRGAGGEDNDDLK--EITYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV F+F G++ F + ++ ++D+ALE GAED +D+D +I +IT+P
Sbjct: 119 KTDGNLGTNGSVAFLFTKRGEITFEDVSLEDQIMDVALEAGAEDIEVDED-EILVITTPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F +++++L G K++++ +VM P T D +A K+ K+++ L+ L DV+ VYTN
Sbjct: 178 SFGDVQDALTAAGLKSDNAEVVMSPSTKAEITDIDQAKKIMKMIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|421788212|ref|ZP_16224521.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-82]
gi|226734885|sp|A3M4T0.2|Y1496_ACIBT RecName: Full=Probable transcriptional regulatory protein A1S_1496
gi|193077146|gb|ABO11924.2| hypothetical protein A1S_1496 [Acinetobacter baumannii ATCC 17978]
gi|410403654|gb|EKP55736.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii Naval-82]
Length = 249
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G +P +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGVGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++D+ALE GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFDDISLEDKIMDVALEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P T D +A ++ KL++ L+ L DV+ VYTN
Sbjct: 178 TFGEVQDALAAAGLKSDNAEVVMSPSTKAEITDIDQAKQVMKLIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|403053112|ref|ZP_10907596.1| hypothetical protein AberL1_16630 [Acinetobacter bereziniae LMG
1003]
gi|445424449|ref|ZP_21436930.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter sp.
WC-743]
gi|444754500|gb|ELW79114.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter sp.
WC-743]
Length = 249
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 155/245 (63%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +REL A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIRELTTAARLGG-PDVGSNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++D+ALE GAED +D+D +I +IT+P
Sbjct: 118 SKTNGNLGTAGSVAYLFTKRGEITFEDVSLEDKIMDIALEAGAEDIEVDED-EILVITTP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKL-QKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T + D + KL K+++ + L DV+ VYTN
Sbjct: 177 ETFGDVQDALTAAGLKSDNAEVVMSPSTKALISDVDQAKLIVKMIDMFEDLDDVQNVYTN 236
Query: 238 ALIFD 242
D
Sbjct: 237 VEFTD 241
>gi|51596364|ref|YP_070555.1| hypothetical protein YPTB2038 [Yersinia pseudotuberculosis IP
32953]
gi|108807433|ref|YP_651349.1| hypothetical protein YPA_1437 [Yersinia pestis Antiqua]
gi|108811695|ref|YP_647462.1| hypothetical protein YPN_1532 [Yersinia pestis Nepal516]
gi|145598362|ref|YP_001162438.1| hypothetical protein YPDSF_1067 [Yersinia pestis Pestoides F]
gi|149366016|ref|ZP_01888051.1| hypothetical protein YPE_1201 [Yersinia pestis CA88-4125]
gi|153950436|ref|YP_001401006.1| hypothetical protein YpsIP31758_2033 [Yersinia pseudotuberculosis
IP 31758]
gi|161484794|ref|NP_669564.2| hypothetical protein y2255 [Yersinia pestis KIM10+]
gi|161511392|ref|NP_993239.2| hypothetical protein YP_1898 [Yersinia pestis biovar Microtus str.
91001]
gi|162421505|ref|YP_001606846.1| hypothetical protein YpAngola_A2424 [Yersinia pestis Angola]
gi|165926409|ref|ZP_02222241.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938828|ref|ZP_02227382.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009204|ref|ZP_02230102.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211114|ref|ZP_02237149.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401361|ref|ZP_02306858.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420405|ref|ZP_02312158.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424796|ref|ZP_02316549.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186895405|ref|YP_001872517.1| hypothetical protein YPTS_2097 [Yersinia pseudotuberculosis PB1/+]
gi|218929162|ref|YP_002347037.1| hypothetical protein YPO2055 [Yersinia pestis CO92]
gi|229894769|ref|ZP_04509949.1| conserved protein [Yersinia pestis Pestoides A]
gi|229897471|ref|ZP_04512627.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229898118|ref|ZP_04513267.1| conserved protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229901977|ref|ZP_04517098.1| conserved protein [Yersinia pestis Nepal516]
gi|270490839|ref|ZP_06207913.1| DNA-binding regulatory protein, YebC/PmpR family [Yersinia pestis
KIM D27]
gi|294503879|ref|YP_003567941.1| hypothetical protein YPZ3_1769 [Yersinia pestis Z176003]
gi|384122406|ref|YP_005505026.1| hypothetical protein YPD4_1815 [Yersinia pestis D106004]
gi|384126197|ref|YP_005508811.1| hypothetical protein YPD8_1735 [Yersinia pestis D182038]
gi|384140116|ref|YP_005522818.1| hypothetical protein A1122_15885 [Yersinia pestis A1122]
gi|384414763|ref|YP_005624125.1| hypothetical protein YPC_2260 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420546936|ref|ZP_15044871.1| hypothetical protein YPPY01_2350 [Yersinia pestis PY-01]
gi|420557775|ref|ZP_15054478.1| hypothetical protein YPPY03_2432 [Yersinia pestis PY-03]
gi|420563278|ref|ZP_15059347.1| hypothetical protein YPPY04_2398 [Yersinia pestis PY-04]
gi|420568321|ref|ZP_15063925.1| hypothetical protein YPPY05_2381 [Yersinia pestis PY-05]
gi|420573984|ref|ZP_15069052.1| hypothetical protein YPPY06_2446 [Yersinia pestis PY-06]
gi|420579295|ref|ZP_15073874.1| hypothetical protein YPPY07_2310 [Yersinia pestis PY-07]
gi|420584634|ref|ZP_15078718.1| hypothetical protein YPPY08_2423 [Yersinia pestis PY-08]
gi|420589763|ref|ZP_15083332.1| hypothetical protein YPPY09_2448 [Yersinia pestis PY-09]
gi|420595151|ref|ZP_15088186.1| hypothetical protein YPPY10_2459 [Yersinia pestis PY-10]
gi|420600788|ref|ZP_15093211.1| hypothetical protein YPPY11_2524 [Yersinia pestis PY-11]
gi|420606244|ref|ZP_15098115.1| hypothetical protein YPPY12_2563 [Yersinia pestis PY-12]
gi|420616991|ref|ZP_15107682.1| hypothetical protein YPPY14_2379 [Yersinia pestis PY-14]
gi|420622313|ref|ZP_15112420.1| hypothetical protein YPPY15_2383 [Yersinia pestis PY-15]
gi|420637715|ref|ZP_15126305.1| hypothetical protein YPPY25_2429 [Yersinia pestis PY-25]
gi|420643246|ref|ZP_15131326.1| hypothetical protein YPPY29_2280 [Yersinia pestis PY-29]
gi|420648465|ref|ZP_15136071.1| hypothetical protein YPPY32_2686 [Yersinia pestis PY-32]
gi|420659586|ref|ZP_15146064.1| hypothetical protein YPPY36_2550 [Yersinia pestis PY-36]
gi|420664910|ref|ZP_15150832.1| hypothetical protein YPPY42_2447 [Yersinia pestis PY-42]
gi|420669805|ref|ZP_15155279.1| hypothetical protein YPPY45_2310 [Yersinia pestis PY-45]
gi|420675154|ref|ZP_15160142.1| hypothetical protein YPPY46_2399 [Yersinia pestis PY-46]
gi|420680745|ref|ZP_15165208.1| hypothetical protein YPPY47_2503 [Yersinia pestis PY-47]
gi|420686028|ref|ZP_15169926.1| hypothetical protein YPPY48_2448 [Yersinia pestis PY-48]
gi|420691215|ref|ZP_15174505.1| hypothetical protein YPPY52_2457 [Yersinia pestis PY-52]
gi|420697021|ref|ZP_15179589.1| hypothetical protein YPPY53_2468 [Yersinia pestis PY-53]
gi|420702587|ref|ZP_15184197.1| hypothetical protein YPPY54_2479 [Yersinia pestis PY-54]
gi|420708287|ref|ZP_15189009.1| hypothetical protein YPPY55_2399 [Yersinia pestis PY-55]
gi|420713688|ref|ZP_15193842.1| hypothetical protein YPPY56_2468 [Yersinia pestis PY-56]
gi|420719150|ref|ZP_15198590.1| hypothetical protein YPPY58_2463 [Yersinia pestis PY-58]
gi|420724676|ref|ZP_15203389.1| hypothetical protein YPPY59_2462 [Yersinia pestis PY-59]
gi|420730291|ref|ZP_15208412.1| hypothetical protein YPPY60_2423 [Yersinia pestis PY-60]
gi|420735314|ref|ZP_15212959.1| hypothetical protein YPPY61_2450 [Yersinia pestis PY-61]
gi|420746321|ref|ZP_15222651.1| hypothetical protein YPPY64_2474 [Yersinia pestis PY-64]
gi|420751929|ref|ZP_15227550.1| hypothetical protein YPPY65_2435 [Yersinia pestis PY-65]
gi|420757439|ref|ZP_15232149.1| hypothetical protein YPPY66_2642 [Yersinia pestis PY-66]
gi|420762992|ref|ZP_15236842.1| hypothetical protein YPPY71_2221 [Yersinia pestis PY-71]
gi|420768167|ref|ZP_15241502.1| hypothetical protein YPPY72_2444 [Yersinia pestis PY-72]
gi|420773212|ref|ZP_15246046.1| hypothetical protein YPPY76_2238 [Yersinia pestis PY-76]
gi|420778745|ref|ZP_15250948.1| hypothetical protein YPPY88_2433 [Yersinia pestis PY-88]
gi|420784323|ref|ZP_15255835.1| hypothetical protein YPPY89_2617 [Yersinia pestis PY-89]
gi|420789567|ref|ZP_15260500.1| hypothetical protein YPPY90_2485 [Yersinia pestis PY-90]
gi|420795065|ref|ZP_15265452.1| hypothetical protein YPPY91_2492 [Yersinia pestis PY-91]
gi|420800122|ref|ZP_15269992.1| hypothetical protein YPPY92_2432 [Yersinia pestis PY-92]
gi|420805510|ref|ZP_15274861.1| hypothetical protein YPPY93_2422 [Yersinia pestis PY-93]
gi|420816390|ref|ZP_15284658.1| hypothetical protein YPPY95_2434 [Yersinia pestis PY-95]
gi|420821667|ref|ZP_15289418.1| hypothetical protein YPPY96_2343 [Yersinia pestis PY-96]
gi|420832459|ref|ZP_15299129.1| hypothetical protein YPPY99_2531 [Yersinia pestis PY-99]
gi|420837332|ref|ZP_15303534.1| hypothetical protein YPPY100_2366 [Yersinia pestis PY-100]
gi|420842501|ref|ZP_15308219.1| hypothetical protein YPPY101_2336 [Yersinia pestis PY-101]
gi|420848149|ref|ZP_15313301.1| hypothetical protein YPPY102_2414 [Yersinia pestis PY-102]
gi|420853665|ref|ZP_15318064.1| hypothetical protein YPPY103_2546 [Yersinia pestis PY-103]
gi|420859019|ref|ZP_15322695.1| hypothetical protein YPPY113_2538 [Yersinia pestis PY-113]
gi|421763545|ref|ZP_16200340.1| hypothetical protein INS_10717 [Yersinia pestis INS]
gi|33517079|sp|Q8ZEU8.1|Y2055_YERPE RecName: Full=Probable transcriptional regulatory protein
YPO2055/y2255/YP_1898
gi|60390888|sp|Q66AU2.1|Y2038_YERPS RecName: Full=Probable transcriptional regulatory protein YPTB2038
gi|118573932|sp|Q1C818.1|Y1437_YERPA RecName: Full=Probable transcriptional regulatory protein YPA_1437
gi|118573937|sp|Q1CJG8.1|Y1532_YERPN RecName: Full=Probable transcriptional regulatory protein YPN_1532
gi|166228136|sp|A4TJK3.1|Y1067_YERPP RecName: Full=Probable transcriptional regulatory protein
YPDSF_1067
gi|166980261|sp|A7FIC8.1|Y2033_YERP3 RecName: Full=Probable transcriptional regulatory protein
YpsIP31758_2033
gi|226701163|sp|B2K321.1|Y2097_YERPB RecName: Full=Probable transcriptional regulatory protein YPTS_2097
gi|226701611|sp|A9QYX6.1|Y2424_YERPG RecName: Full=Probable transcriptional regulatory protein
YpAngola_A2424
gi|51589646|emb|CAH21276.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775343|gb|ABG17862.1| hypothetical protein YPN_1532 [Yersinia pestis Nepal516]
gi|108779346|gb|ABG13404.1| hypothetical protein YPA_1437 [Yersinia pestis Antiqua]
gi|115347773|emb|CAL20690.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145210058|gb|ABP39465.1| hypothetical protein YPDSF_1067 [Yersinia pestis Pestoides F]
gi|149292429|gb|EDM42503.1| hypothetical protein YPE_1201 [Yersinia pestis CA88-4125]
gi|152961931|gb|ABS49392.1| conserved hypothetical protein TIGR01033 [Yersinia
pseudotuberculosis IP 31758]
gi|162354320|gb|ABX88268.1| conserved hypothetical protein TIGR01033 [Yersinia pestis Angola]
gi|165913191|gb|EDR31814.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921630|gb|EDR38827.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991759|gb|EDR44060.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166208294|gb|EDR52774.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962100|gb|EDR58121.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049057|gb|EDR60465.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056678|gb|EDR66447.1| conserved hypothetical protein TIGR01033 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186698431|gb|ACC89060.1| protein of unknown function DUF28 [Yersinia pseudotuberculosis
PB1/+]
gi|229680873|gb|EEO76968.1| conserved protein [Yersinia pestis Nepal516]
gi|229688834|gb|EEO80901.1| conserved protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229693808|gb|EEO83857.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229702242|gb|EEO90261.1| conserved protein [Yersinia pestis Pestoides A]
gi|262362002|gb|ACY58723.1| hypothetical protein YPD4_1815 [Yersinia pestis D106004]
gi|262365861|gb|ACY62418.1| hypothetical protein YPD8_1735 [Yersinia pestis D182038]
gi|270339343|gb|EFA50120.1| DNA-binding regulatory protein, YebC/PmpR family [Yersinia pestis
KIM D27]
gi|294354338|gb|ADE64679.1| hypothetical protein YPZ3_1769 [Yersinia pestis Z176003]
gi|320015267|gb|ADV98838.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|342855245|gb|AEL73798.1| hypothetical protein A1122_15885 [Yersinia pestis A1122]
gi|391426200|gb|EIQ88407.1| hypothetical protein YPPY01_2350 [Yersinia pestis PY-01]
gi|391428991|gb|EIQ90892.1| hypothetical protein YPPY03_2432 [Yersinia pestis PY-03]
gi|391441813|gb|EIR02271.1| hypothetical protein YPPY04_2398 [Yersinia pestis PY-04]
gi|391443414|gb|EIR03731.1| hypothetical protein YPPY05_2381 [Yersinia pestis PY-05]
gi|391446712|gb|EIR06724.1| hypothetical protein YPPY06_2446 [Yersinia pestis PY-06]
gi|391458947|gb|EIR17767.1| hypothetical protein YPPY07_2310 [Yersinia pestis PY-07]
gi|391459786|gb|EIR18537.1| hypothetical protein YPPY08_2423 [Yersinia pestis PY-08]
gi|391462018|gb|EIR20583.1| hypothetical protein YPPY09_2448 [Yersinia pestis PY-09]
gi|391474869|gb|EIR32123.1| hypothetical protein YPPY10_2459 [Yersinia pestis PY-10]
gi|391476792|gb|EIR33886.1| hypothetical protein YPPY11_2524 [Yersinia pestis PY-11]
gi|391477115|gb|EIR34177.1| hypothetical protein YPPY12_2563 [Yersinia pestis PY-12]
gi|391491862|gb|EIR47379.1| hypothetical protein YPPY15_2383 [Yersinia pestis PY-15]
gi|391494075|gb|EIR49354.1| hypothetical protein YPPY14_2379 [Yersinia pestis PY-14]
gi|391511644|gb|EIR65033.1| hypothetical protein YPPY25_2429 [Yersinia pestis PY-25]
gi|391522143|gb|EIR74555.1| hypothetical protein YPPY29_2280 [Yersinia pestis PY-29]
gi|391525805|gb|EIR77915.1| hypothetical protein YPPY32_2686 [Yersinia pestis PY-32]
gi|391537724|gb|EIR88591.1| hypothetical protein YPPY36_2550 [Yersinia pestis PY-36]
gi|391540316|gb|EIR90955.1| hypothetical protein YPPY42_2447 [Yersinia pestis PY-42]
gi|391542282|gb|EIR92756.1| hypothetical protein YPPY45_2310 [Yersinia pestis PY-45]
gi|391555551|gb|EIS04716.1| hypothetical protein YPPY46_2399 [Yersinia pestis PY-46]
gi|391556054|gb|EIS05172.1| hypothetical protein YPPY47_2503 [Yersinia pestis PY-47]
gi|391557311|gb|EIS06318.1| hypothetical protein YPPY48_2448 [Yersinia pestis PY-48]
gi|391570815|gb|EIS18243.1| hypothetical protein YPPY52_2457 [Yersinia pestis PY-52]
gi|391571405|gb|EIS18763.1| hypothetical protein YPPY53_2468 [Yersinia pestis PY-53]
gi|391579410|gb|EIS25545.1| hypothetical protein YPPY54_2479 [Yersinia pestis PY-54]
gi|391583876|gb|EIS29485.1| hypothetical protein YPPY55_2399 [Yersinia pestis PY-55]
gi|391586984|gb|EIS32222.1| hypothetical protein YPPY56_2468 [Yersinia pestis PY-56]
gi|391598904|gb|EIS42580.1| hypothetical protein YPPY58_2463 [Yersinia pestis PY-58]
gi|391600212|gb|EIS43762.1| hypothetical protein YPPY60_2423 [Yersinia pestis PY-60]
gi|391602005|gb|EIS45357.1| hypothetical protein YPPY59_2462 [Yersinia pestis PY-59]
gi|391614832|gb|EIS56663.1| hypothetical protein YPPY61_2450 [Yersinia pestis PY-61]
gi|391620403|gb|EIS61563.1| hypothetical protein YPPY64_2474 [Yersinia pestis PY-64]
gi|391627020|gb|EIS67281.1| hypothetical protein YPPY65_2435 [Yersinia pestis PY-65]
gi|391636153|gb|EIS75221.1| hypothetical protein YPPY66_2642 [Yersinia pestis PY-66]
gi|391638244|gb|EIS77072.1| hypothetical protein YPPY71_2221 [Yersinia pestis PY-71]
gi|391640728|gb|EIS79244.1| hypothetical protein YPPY72_2444 [Yersinia pestis PY-72]
gi|391650200|gb|EIS87504.1| hypothetical protein YPPY76_2238 [Yersinia pestis PY-76]
gi|391654796|gb|EIS91603.1| hypothetical protein YPPY88_2433 [Yersinia pestis PY-88]
gi|391659451|gb|EIS95733.1| hypothetical protein YPPY89_2617 [Yersinia pestis PY-89]
gi|391663262|gb|EIS99122.1| hypothetical protein YPPY90_2485 [Yersinia pestis PY-90]
gi|391670778|gb|EIT05785.1| hypothetical protein YPPY91_2492 [Yersinia pestis PY-91]
gi|391680671|gb|EIT14696.1| hypothetical protein YPPY93_2422 [Yersinia pestis PY-93]
gi|391682087|gb|EIT15995.1| hypothetical protein YPPY92_2432 [Yersinia pestis PY-92]
gi|391694483|gb|EIT27138.1| hypothetical protein YPPY95_2434 [Yersinia pestis PY-95]
gi|391698007|gb|EIT30357.1| hypothetical protein YPPY96_2343 [Yersinia pestis PY-96]
gi|391709363|gb|EIT40548.1| hypothetical protein YPPY99_2531 [Yersinia pestis PY-99]
gi|391715329|gb|EIT45888.1| hypothetical protein YPPY100_2366 [Yersinia pestis PY-100]
gi|391716106|gb|EIT46586.1| hypothetical protein YPPY101_2336 [Yersinia pestis PY-101]
gi|391726535|gb|EIT55873.1| hypothetical protein YPPY102_2414 [Yersinia pestis PY-102]
gi|391729827|gb|EIT58777.1| hypothetical protein YPPY103_2546 [Yersinia pestis PY-103]
gi|391734926|gb|EIT63143.1| hypothetical protein YPPY113_2538 [Yersinia pestis PY-113]
gi|411176446|gb|EKS46466.1| hypothetical protein INS_10717 [Yersinia pestis INS]
Length = 247
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++T++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDTVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVSLIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|238756967|ref|ZP_04618155.1| hypothetical protein yaldo0001_16200 [Yersinia aldovae ATCC 35236]
gi|238704797|gb|EEP97326.1| hypothetical protein yaldo0001_16200 [Yersinia aldovae ATCC 35236]
Length = 247
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLAEDTVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVALIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|451949073|ref|YP_007469668.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfocapsa
sulfexigens DSM 10523]
gi|451908421|gb|AGF80015.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfocapsa
sulfexigens DSM 10523]
Length = 249
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 154/245 (62%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DAKRGKI TR+++E+ VA G +PD N +LR AI A N
Sbjct: 1 MSGHSKWANIKHKKGAADAKRGKIFTRLIKEITVAARMGGGDPDGNPRLRSAIVTARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K ++ E Y E+ YEGY G A++V+C+T+NR RTV++IR+ F
Sbjct: 61 MPKDNITRAIKKGTGELEGEV--YDEILYEGYGPGGVAVLVECMTDNRNRTVADIRHYFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + G V +MF G +L T + L++LA+E GA+D ++++D+ I+T+P
Sbjct: 119 KSGGNLGESGCVAYMFDKKGMMLVDKTTISEEALMELAIEAGADD-VVEEDDYFQIVTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNI-VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F +++ LE G + + M P T I V ++ A L KLL+ ++ DV+ V+ N
Sbjct: 178 EDFDAVRDELEEGGVSFAEASLTMVPQTTIEVTEEKPARALLKLLDNIEGHDDVQNVHAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDIDD 242
>gi|422018244|ref|ZP_16364801.1| hypothetical protein OO9_06052 [Providencia alcalifaciens Dmel2]
gi|414104536|gb|EKT66101.1| hypothetical protein OO9_06052 [Providencia alcalifaciens Dmel2]
Length = 247
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDNDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GA+D D + + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGVDEDALMEAALEAGADDVETYDDGAMDVYTTFE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF +E++ + M P A KL +L++ L+ DV++VY N
Sbjct: 179 TFGAVKDALDAAGFTSEAAEVSMIPSITAELDVETAPKLMRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|422014396|ref|ZP_16361008.1| hypothetical protein OOA_06561 [Providencia burhodogranariea DSM
19968]
gi|414101048|gb|EKT62653.1| hypothetical protein OOA_06561 [Providencia burhodogranariea DSM
19968]
Length = 247
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + TN +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDTATNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGNDDNDNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GA+D D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKRGVITYAPGVDEDALMEAALEAGADDVETYDDGAIDVYTTLE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ GF +E + + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGEVKDALDAAGFTSEVAEVSMIPSTKAELDVETAPKLLRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|89075784|ref|ZP_01162172.1| hypothetical protein SKA34_03054 [Photobacterium sp. SKA34]
gi|89048516|gb|EAR54091.1| hypothetical protein SKA34_03054 [Photobacterium sp. SKA34]
Length = 248
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 153/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSK+ANIK +K DAKRGKI T+++RE+ VA G+ P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKFANIKHRKAAQDAKRGKIFTKLIREITVAAKEGGSEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + ++ + V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTINRAVTRGAGGEGDDGVET--VIYEGYGPAGTAVMVECLTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + ++ ++++ALE GA+D + D I + T+P+
Sbjct: 119 KAGGNLGTDGSVSYLFDKKGVISYAVGLDEDAIMEVALESGADDIETNDDGSIDVYTTPA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF AE++ + + P T A KL +L++ L+ L D+++VY N
Sbjct: 179 DFGAVKDALDAAGFTAENAEVTLMPSTKAELDATTAPKLLRLIDALEDLDDIQEVYHNGD 238
Query: 240 IFD 242
+ D
Sbjct: 239 MSD 241
>gi|21959102|gb|AAM85815.1|AE013828_6 hypothetical protein y2255 [Yersinia pestis KIM10+]
gi|45436562|gb|AAS62116.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
str. 91001]
Length = 251
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 5 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 64
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 65 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 122
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++T++D ALE GA+D ++ D I + T+
Sbjct: 123 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDTVMDAALEAGADDIVVYDDGAIDVFTAWE 182
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 183 SLGAVKDALDATGLVAEGAEVSLIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 242
Query: 240 IFD 242
I D
Sbjct: 243 ISD 245
>gi|365834447|ref|ZP_09375893.1| DNA-binding regulatory protein, YebC/PmpR family [Hafnia alvei ATCC
51873]
gi|364569224|gb|EHM46847.1| DNA-binding regulatory protein, YebC/PmpR family [Hafnia alvei ATCC
51873]
Length = 272
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 25 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDPGANPRLRAAIDKALSNN 84
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G+AI+V+C+++NR RTV+ +R+ F
Sbjct: 85 MTRDTLNRAIARGVGG--DDDTNMETIIYEGYGPGGSAIMVECLSDNRNRTVAEVRHAFT 142
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T
Sbjct: 143 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDTVMDAALEAGADDVVTYDDGAIDVFTPWE 202
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F E+K++L+ G +ES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 203 TFGEVKDALDAAGLVSESAEVSMIPSTKAEMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 262
Query: 240 IFD 242
+ D
Sbjct: 263 VSD 265
>gi|197119678|ref|YP_002140105.1| hypothetical protein Gbem_3313 [Geobacter bemidjiensis Bem]
gi|226703778|sp|B5EAH0.1|Y3313_GEOBB RecName: Full=Probable transcriptional regulatory protein Gbem_3313
gi|197089038|gb|ACH40309.1| protein of unknown function DUF28 [Geobacter bemidjiensis Bem]
Length = 247
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 151/238 (63%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGK+ T+I++E+ VA G +PD N +LR AI+KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGGDPDGNPRLRTAIDKAKGEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + E Y E YEGY G A++V+ +T+NR RTVS++R+IF
Sbjct: 61 MPKDNVERAIKKGVGGL--EGTTYEETTYEGYGPGGTAVLVEVMTDNRNRTVSDVRSIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V ++F G L+F + + L + ++E GA+D + D+D + ++T P+
Sbjct: 119 KCNGNMGESGCVSWLFDKKGLLVFPKSIDFDKLFEASIEAGADD-VTDEDEQYEVLTDPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++K +LE GFKAES+ I M P T + + A + KL++ ++ DV+ VY N
Sbjct: 178 AFHQVKTALEGAGFKAESAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYAN 235
>gi|421496040|ref|ZP_15943285.1| hypothetical protein B224_002282 [Aeromonas media WS]
gi|407184936|gb|EKE58748.1| hypothetical protein B224_002282 [Aeromonas media WS]
Length = 246
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ + G+ +P N +LR A+ AL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITTSARLGDADPANNPRLRAAVAAALTGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ E + I YEGY G+A++V+C+T+NR RTV+ +R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGGDGEQLETI--VYEGYGPAGSAVMVECLTDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G L F+ ++ L+D ALE GA+D + ++D I + T+P+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGLLTFV-GVDEDALMDAALEAGADDVVTEEDGSIEVYTTPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F + + LE GFK +S+ + M T A KL +L++ L+ L DV++VY N
Sbjct: 178 DFGTVLDGLEAAGFKPQSAEVTMIASTEAELDADTAPKLMRLIDMLEDLDDVQEVYHNGS 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|270157094|ref|ZP_06185751.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|289164495|ref|YP_003454633.1| hypothetical protein LLO_1154 [Legionella longbeachae NSW150]
gi|269989119|gb|EEZ95373.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|288857668|emb|CBJ11511.1| putative conserved hypothetical protein [Legionella longbeachae
NSW150]
Length = 247
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 157/239 (65%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARLGGGEESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I AI++ + E + + +RYEGY G A++VDC+++N+ RTVS++R+ F
Sbjct: 61 MKRDTIDNAIKRGVGGLDGEAM--VAMRYEGYGPGGVAVLVDCLSDNKNRTVSDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L P + ++++A++ GA D ++++ +I +IT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMEPGQSEERVMEIAIDAGANDVSVEEE-QIEVITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L G K E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHSVLNALTNAGLKIEQSHLTMRAQTLVSIDDESAQSLLKLIDMLEDLDDVQEVYSNA 236
>gi|119476896|ref|ZP_01617177.1| hypothetical protein GP2143_10097 [marine gamma proteobacterium
HTCC2143]
gi|119449703|gb|EAW30940.1| hypothetical protein GP2143_10097 [marine gamma proteobacterium
HTCC2143]
Length = 248
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+I+RE+ VA G +P+ N LR I+KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKVFTKIIREIVVAAKAGGPSPEDNPTLRAVIDKALGSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AI + + +E+ NY YEGY V G A++V+C+T+NR RTV+ IR+ F+
Sbjct: 61 MRRDTIDKAIARG-AGTGDED-NYEAASYEGYGVGGIAVLVECLTDNRNRTVAEIRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ ++D+ALE GAED +++ D I + T+
Sbjct: 119 KRGGNLGTDGSVAYLFTRTGQISF-EKGDEDQVMDIALEAGAEDVVMNDDGSIDVSTAFE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+ +K ++ G + + + M P + A K L++ L+ L DV+ VYTNA
Sbjct: 178 DFLSVKEAMVAGGLTPDHAEVTMLPSVLVELDKDGAEKAMGLIDMLEDLDDVQNVYTNAD 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|269926074|ref|YP_003322697.1| hypothetical protein Tter_0958 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789734|gb|ACZ41875.1| protein of unknown function DUF28 [Thermobaculum terrenum ATCC
BAA-798]
Length = 252
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 150/241 (62%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWA IKRKK DA++G+I T+I RE+ VA+ G +P+ N +LRLAI+KA N
Sbjct: 1 MAGHSKWAQIKRKKEATDARKGQIFTKISREIAVAVRQGGPDPEANYRLRLAIQKARSIN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI++ N NY E+ YEGY G A++V+ +T+NR RTVS IRN+FN
Sbjct: 61 MPADNIKRAIERAAGEGSNAT-NYEEITYEGYGPAGVAVLVETLTDNRNRTVSEIRNVFN 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLAL---EKGAEDFLIDKDNKITIIT 176
++GG L + GSV ++F G ++ P+ ++T D+AL E GAED +D + + T
Sbjct: 120 RSGGRLGESGSVSWIFDEKGLIVVEPDN-QHTADDIALAAIEAGAEDVTPLEDGTVEVYT 178
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
++ SLE GFK S+ V P T + D +A + K + +L+ L DV++VYT
Sbjct: 179 QFQDLKSVEESLEQMGFKVASAEKVYIPNTYVEPSDTDAQSILKFIEKLEDLDDVQEVYT 238
Query: 237 N 237
N
Sbjct: 239 N 239
>gi|257455417|ref|ZP_05620652.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257447379|gb|EEV22387.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 249
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA +GKI T+I+REL A G+ +P +N +LR A+EKA N
Sbjct: 1 MAGHSKWANIKHRKAKQDAAKGKIFTKIIRELVSAAKQGDPDPASNPRLRAAVEKANSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI++ N+N+ E+ YEGY + G A+IV+ +T+N RTV +R+ F+
Sbjct: 61 MTKDTVKRAIERGAGGGDNDNMQ--EITYEGYGLGGVAVIVETMTDNLNRTVGEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL GSV +MF G++ F + ++T++++ALE GA D + D+ IT++T P
Sbjct: 119 KNGGNLGTSGSVAYMFSKRGEITFDDVSLEDTIMEVALEAGATDIENNGDS-ITVVTEPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
F ++ ++LE G K++++ + M P T D E A K+ K+++ L+ L DV++VYTN
Sbjct: 178 NFGDVMDALEKAGLKSDNAEVTMSPSTMADVTDVEDAKKIMKMIDMLEDLDDVQEVYTN 236
>gi|163751782|ref|ZP_02158999.1| hypothetical protein KT99_11585 [Shewanella benthica KT99]
gi|161328346|gb|EDP99506.1| hypothetical protein KT99_11585 [Shewanella benthica KT99]
Length = 248
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NIK +K DAKRGK+ T+ +REL VA G++ D+N +LR AI+K+L N
Sbjct: 1 MSGHSKWDNIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDADSNPRLRAAIDKSLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTIERAVKRGAGELDGQVLETI--MYEGYGPGGTAVMVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + T ++ ++D+ALE GA+D + +D I + TSP
Sbjct: 119 KSGGNLGTDGSVSYLFDKKGVISYAAGTDEDIVMDVALEAGADDVVSHEDGAIDVFTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G ++ + + M P T A K +L++ L+ DV++VY NA
Sbjct: 179 DFGAVKDALDAAGLESVHAEVTMVPSTTASLDASTAAKFLRLIDNLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|451964560|ref|ZP_21917824.1| putative transcriptional regulatory protein [Edwardsiella tarda
NBRC 105688]
gi|451316680|dbj|GAC63186.1| putative transcriptional regulatory protein [Edwardsiella tarda
NBRC 105688]
Length = 248
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDGNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KCGGNLGTDGSVSYLFTKKGVISYAPGLDEDVVMDAALEAGADDVVTYDDGAIDVYTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGKVKDALDAAGLVAESAEVSMIPSTQADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|381195912|ref|ZP_09903254.1| hypothetical protein AlwoW_01470 [Acinetobacter lwoffii WJ10621]
Length = 249
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +REL A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKLFTKFIRELTTAAKLGGGDAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ E+ YEGY V G A+IV+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDVINRAIQRGAGGEDNDDLK--EITYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV F+F G++ F + ++ ++D+ALE GAED +D+ N+I +IT+P
Sbjct: 119 KTDGNLGTNGSVAFLFTKRGEITFEDVSLEDKIMDVALEAGAEDIEVDE-NEILVITTPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F +++++L G K++++ +VM P T D +A K+ K+++ L+ L DV+ VYTN
Sbjct: 178 SFGDVQDALTAAGLKSDNAEVVMSPSTKAEITDIDQAKKIMKMIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|258545754|ref|ZP_05705988.1| YebC protein of hypothetical function DUF28 [Cardiobacterium
hominis ATCC 15826]
gi|258518999|gb|EEV87858.1| YebC protein of hypothetical function DUF28 [Cardiobacterium
hominis ATCC 15826]
Length = 244
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 145/239 (60%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR++REL +A G ++ +N +LRLAI KA N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKVFTRLIRELTIAARHGGSDASSNPRLRLAIAKAQAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI++ ++ + E+RYEGY G A++VDC+T+N+ RTV +R+ F
Sbjct: 61 MTKDTMERAIKRGAGELEGAQME--EIRYEGYGPGGVAVMVDCLTDNKNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV F F G L F ++ +++AL+ GA D ID +N ++T+P
Sbjct: 119 KAGGNLGTSGSVAFQFTERGVLFFEKVANEDAFMEVALDAGAADLEID-ENGAEVLTAPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + ++L GF + S + MR +A K+ +L+ L++L DV+ VYTNA
Sbjct: 178 DYAAVYDALVAAGFTPDESEVTMRADNLSPVSADDADKVMRLIERLEELDDVQSVYTNA 236
>gi|421668853|ref|ZP_16108886.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC087]
gi|410378987|gb|EKP31596.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC087]
Length = 249
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G +P +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGVGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++D+A+E GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFDDVSLEDKIMDVAIEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P T D +A ++ KL++ L+ L DV+ VYTN
Sbjct: 178 TFGEVQDALAAAGLKSDNAEVVMSPSTKAEITDIDQAKQVMKLIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|421079132|ref|ZP_15540077.1| UPF0082 protein yeeN 1 [Pectobacterium wasabiae CFBP 3304]
gi|401706319|gb|EJS96497.1| UPF0082 protein yeeN 1 [Pectobacterium wasabiae CFBP 3304]
Length = 247
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGIGG--DDDTNMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G KAE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGNVKDALDAAGLKAEAAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|262375415|ref|ZP_06068648.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309669|gb|EEY90799.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 249
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 155/245 (63%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT--NIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +REL A G PDT N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIRELTTAAKLGG-PDTASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDVINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV F+F G++ F + ++ ++++ALE GAED + +D+ I +IT+P
Sbjct: 118 SKTDGNLGTNGSVAFLFTKRGEITFEDVSLEDQIMEVALEAGAEDIEVTEDD-ILVITTP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A K+ K+++ L+ L DV+ VYTN
Sbjct: 177 EAFGDVQDALTAAGLKSDNAEVVMSPSTKAEITDIDQAKKIMKMIDMLEDLDDVQNVYTN 236
Query: 238 ALIFD 242
D
Sbjct: 237 VEFSD 241
>gi|261821377|ref|YP_003259483.1| hypothetical protein Pecwa_2101 [Pectobacterium wasabiae WPP163]
gi|261605390|gb|ACX87876.1| protein of unknown function DUF28 [Pectobacterium wasabiae WPP163]
Length = 247
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGIGG--DDDTNMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDAVMDAALEAGADDVVTYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G KAE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 TFGNVKDALDAAGLKAEAAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|238754858|ref|ZP_04616208.1| hypothetical protein yruck0001_15660 [Yersinia ruckeri ATCC 29473]
gi|238706869|gb|EEP99236.1| hypothetical protein yruck0001_15660 [Yersinia ruckeri ATCC 29473]
Length = 247
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPAANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLDEDTVMDAALEAGADDVTVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
++K++L+ G AES+ + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGQVKDALDAAGLVAESAEVSLIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|389706431|ref|ZP_10186444.1| hypothetical protein HADU_05593 [Acinetobacter sp. HA]
gi|388610566|gb|EIM39683.1| hypothetical protein HADU_05593 [Acinetobacter sp. HA]
Length = 249
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 154/240 (64%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +REL A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKLFTKYIRELTTAAKLGG-PDAGSNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDVINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV F+F G++ F + ++ ++++ALE GAED +D+D +I +IT+P
Sbjct: 118 SKTDGNLGTNGSVAFLFTKRGEITFEDVSLEDQIMEVALEAGAEDIEVDED-EILVITTP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F ++++L G K++++ +VM P T D +A K+ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGTVQDALAAAGLKSDNAEVVMSPSTKAEITDIDQAKKIMKMIDMLEDLDDVQNVYTN 236
>gi|418019658|ref|ZP_12659100.1| DNA-binding regulatory protein, YebC/PmpR family [Candidatus
Regiella insecticola R5.15]
gi|347604984|gb|EGY29508.1| DNA-binding regulatory protein, YebC/PmpR family [Candidatus
Regiella insecticola R5.15]
Length = 247
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPAANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + N + N+ I YEGY+ G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAVARGVGNDEENNMETI--LYEGYAPGGIAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D AL GA D + D I + T+P
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISYAPGLEEEKMMDCALAVGAADIEVYDDGAIDVFTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF A+ + + + P + A KL +L++ L++ DV++VY N
Sbjct: 179 TFGAVKDALDAEGFIAQQAEVALIPANTVDLDAATAPKLLRLIDMLEESDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|212556643|gb|ACJ29097.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 247
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 153/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NIK +K DAKRGK+ T+ +REL VA G++PD+N +LR AI+K+L N
Sbjct: 1 MAGHSKWDNIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDSNPRLRAAIDKSLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELDGQVLETI--IYEGYGPGGTAVLVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G ++ N ++T++D ALE GA+D + +D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYLFDKKG-IISYQNADEDTVMDAALEAGADDVVAHEDCSIDVFTTPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G +A ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 178 DFGAVKDALDAAGLEAVNAEVTMLPSTKAELDASTAPKFLRLIDNLEDHDDVQEVYHNAD 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|238751588|ref|ZP_04613078.1| hypothetical protein yrohd0001_32930 [Yersinia rohdei ATCC 43380]
gi|238792581|ref|ZP_04636214.1| hypothetical protein yinte0001_20720 [Yersinia intermedia ATCC
29909]
gi|238710150|gb|EEQ02378.1| hypothetical protein yrohd0001_32930 [Yersinia rohdei ATCC 43380]
gi|238728216|gb|EEQ19737.1| hypothetical protein yinte0001_20720 [Yersinia intermedia ATCC
29909]
Length = 247
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ ++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDAVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVALIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|54294185|ref|YP_126600.1| hypothetical protein lpl1249 [Legionella pneumophila str. Lens]
gi|67462029|sp|Q5WX49.1|Y1249_LEGPL RecName: Full=Probable transcriptional regulatory protein lpl1249
gi|53754017|emb|CAH15488.1| hypothetical protein lpl1249 [Legionella pneumophila str. Lens]
Length = 247
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 157/239 (65%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL+AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F+
Sbjct: 61 MKRDTIDNAVKRGVGGADGEAM--IAMRYEGYGPGGVAILVDCLSDNKNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F + G++L N ++ ++++A++ GA D ++ D++I IIT
Sbjct: 119 KHGGNLGTDGSVSYLFTNQGEILMASNQPEDKVMEIAIDAGASDVAVE-DSQIEIITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L+ + E S + MR T + D A L KL++ L+ L DV++VY+NA
Sbjct: 178 AYHTVLNALQDAALEVEQSHLTMRAQTLVPISDETAESLIKLIDMLEDLDDVQEVYSNA 236
>gi|294650143|ref|ZP_06727523.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292823962|gb|EFF82785.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 249
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 156/240 (65%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ +N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEENDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++++ALE GA+D +D+D+ I +ITSP
Sbjct: 118 SKTNGNLGTNGSVAYLFTKRGEISFEDVSLEDKIMEVALEAGADDIEVDEDS-ILVITSP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F E++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGEVQDALAAAGLKSDNAEVVMSPSTKAEITDVDQAKQIMKMIDMLEDLDDVQNVYTN 236
>gi|220935405|ref|YP_002514304.1| hypothetical protein Tgr7_2237 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|254801696|sp|B8GUJ7.1|Y2237_THISH RecName: Full=Probable transcriptional regulatory protein Tgr7_2237
gi|219996715|gb|ACL73317.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 249
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G + ++N +LRLA++KALDAN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIKEITVAARMGGSDLNSNPRLRLAVDKALDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI++ + E +NY E+RYEGY G AI+VD +T+NR RTV+ +R+ F
Sbjct: 61 MTKDTVERAIKRGAGEL--EGVNYEEIRYEGYGPGGVAIMVDTMTDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ G L + + ++ ++++ALE GAED + D I +IT+P
Sbjct: 119 KCGGNLGTDGSVAYLFEKQGVLSYPAGSDEDRIMEVALEAGAEDVAVGDDGSIEVITNPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ ++ G K E + + MR T A L KLL+ L L DV+ VYTNA
Sbjct: 179 DYEAVRAAMTEAGLKPEHNEVTMRAGTAAPVDVESAPSLLKLLDMLDDLDDVQNVYTNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FPD 241
>gi|308187175|ref|YP_003931306.1| hypothetical protein Pvag_1669 [Pantoea vagans C9-1]
gi|308057685|gb|ADO09857.1| UPF0082 protein [Pantoea vagans C9-1]
Length = 247
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+ I YEGY G+AI+++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMDRAIARGVGGDDNANMETI--IYEGYGPGGSAIMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ +++ ALE G ED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFNKKGVISFAPGQDEDAVMEAALEAGGEDIVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGSVRDALEAAGLKADTAEVAMIPTTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|260779083|ref|ZP_05887975.1| hypothetical protein VIC_004490 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605247|gb|EEX31542.1| hypothetical protein VIC_004490 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 247
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T+++RE+ VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIFTKLIREIVVAAKEGGGEPENNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RA+ + ++ + V YEGY G A++V+C+T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAVSRGAGGEGDDGMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++++AL+ GA+D ++ I + T P
Sbjct: 119 KAGGNLGTDGSVNYLFDKKGVISYAPGLDEDEVMEVALDSGADDIETAENGAIDVFTEPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+A ++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGAVKDALDAAGFEAANAEVSLIPSTKAELDADTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|402699152|ref|ZP_10847131.1| hypothetical protein PfraA_04968 [Pseudomonas fragi A22]
Length = 248
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGADPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ + ++ L++ A+E A+D + ++D + + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISYAAGIDEDALMEAAMEADADDVVTNEDGSMDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GF + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEGAGFTPADAEIVMLPTTSAELDLDGAQKVLKLIDMLEDLDDVQNVYSNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 IPD 241
>gi|170024380|ref|YP_001720885.1| hypothetical protein YPK_2146 [Yersinia pseudotuberculosis YPIII]
gi|226701189|sp|B1JLL3.1|Y2146_YERPY RecName: Full=Probable transcriptional regulatory protein YPK_2146
gi|169750914|gb|ACA68432.1| protein of unknown function DUF28 [Yersinia pseudotuberculosis
YPIII]
Length = 247
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++T++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDTVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K+ L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDVLDATGLVAEGAEVSLIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|271500734|ref|YP_003333759.1| hypothetical protein Dd586_2200 [Dickeya dadantii Ech586]
gi|270344289|gb|ACZ77054.1| protein of unknown function DUF28 [Dickeya dadantii Ech586]
Length = 247
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T
Sbjct: 119 KCGGNLGTDGSVSYLFSKKGVISYAPGLDEDTVMDAALEAGADDVVSYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G +E++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 IFGQVKDALDAAGLVSEAAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|291280038|ref|YP_003496873.1| hypothetical protein DEFDS_1661 [Deferribacter desulfuricans SSM1]
gi|290754740|dbj|BAI81117.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 249
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+I REL VA G++P+ N +LR+A+EKA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKKGKIFTKIARELMVAAKIGGSDPEMNPRLRVALEKARQAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK N+ RAI+K NE+ N+ +V YEGY G AI+V +T+N+ RTV+ +R+
Sbjct: 61 MPKENVERAIKKGTGE-GNES-NFEDVIYEGYGPGGVAILVQALTDNKNRTVAEVRSTLT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L + G V ++F+ G + T ++TL+D+ LE GAED ++ DN +IT P
Sbjct: 119 KRGGSLGEAGCVAWLFEKKGVIGIKRETIDEDTLMDIVLEAGAEDLKVEDDN-YEVITEP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S++ +K +LE G K E + + M+P + + A KL L+ L+ L DV++VY N
Sbjct: 178 SEYYNVKKALEDKGIKIEYAELTMKPKNTVKVEGENAKKLLGLIEALEDLDDVQEVYANF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIDD 241
>gi|123442637|ref|YP_001006614.1| hypothetical protein YE2395 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332161516|ref|YP_004298093.1| hypothetical protein YE105_C1894 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386308628|ref|YP_006004684.1| hypothetical protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418243539|ref|ZP_12870013.1| hypothetical protein IOK_19380 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420258271|ref|ZP_14761009.1| hypothetical protein YWA314_06008 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433549354|ref|ZP_20505398.1| FIG000859: hypothetical protein YebC [Yersinia enterocolitica IP
10393]
gi|166228368|sp|A1JRK5.1|Y2395_YERE8 RecName: Full=Probable transcriptional regulatory protein YE2395
gi|122089598|emb|CAL12447.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318605498|emb|CBY26996.1| hypothetical protein Y11_11851 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665746|gb|ADZ42390.1| hypothetical protein YE105_C1894 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|351777000|gb|EHB19256.1| hypothetical protein IOK_19380 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404514245|gb|EKA28042.1| hypothetical protein YWA314_06008 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431788489|emb|CCO68438.1| FIG000859: hypothetical protein YebC [Yersinia enterocolitica IP
10393]
Length = 247
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ ++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDAVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVSLIPSTKAELDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|392935713|pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From
Coxiella Burnetii
Length = 247
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 144/238 (60%), Gaps = 3/238 (1%)
Query: 2 AGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDANI 60
AGHSKWANIK K DAKRGK+ T+++RE+ VA G D+N +LR ++KA AN
Sbjct: 5 AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANX 64
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
PK+ I RAI++ + +N+ +EVRYEGY +G A+ VDC+T+N+ RTV+ +R+ F+K
Sbjct: 65 PKDTITRAIKRGAGSGAGDNL--VEVRYEGYGPSGVAVXVDCLTDNKNRTVAEVRHAFSK 122
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GNL EGSV ++FK G + F PN+ + + ++ALE GAED + D I + T P
Sbjct: 123 CDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIXEIALEVGAEDVTTNDDGSIDVTTLPED 182
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +I+N+ + + + + T + A + +L L+ L DV+ VY+NA
Sbjct: 183 FEKIRNAXKAADLNPSHAEVTVLASTEVGLDKDSAEQXLRLTEXLEDLDDVQNVYSNA 240
>gi|350553201|ref|ZP_08922384.1| UPF0082 protein yeeN [Thiorhodospira sibirica ATCC 700588]
gi|349791537|gb|EGZ45418.1| UPF0082 protein yeeN [Thiorhodospira sibirica ATCC 700588]
Length = 245
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 155/243 (63%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T++++E+ VA G + + N +LR A++KALDAN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIKEITVAARMGGSDINANPRLRQAVDKALDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA ++ + + +NY ++RYEGY G AI+VDC+T+NR RTVS +R+ F+
Sbjct: 61 MTKDTIERATKRGAGEL--DGVNYEDIRYEGYGPGGVAIMVDCMTDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ G L + T + +++ ALE GA+D +++ D + ++T P
Sbjct: 119 KCGGNLGTDGSVAYLFEALGVLNYPAGTHEEQVMEAALEAGAQDVVVNDDGSLEVLTGPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++ ++ G K E S + MR T+ + +A + KLL L L DV+ VYTNA
Sbjct: 179 DYENVRAAMLQAGLKPEHSELTMRASTSSPVELEQAPTVLKLLEMLDDLDDVQNVYTNAD 238
Query: 240 IFD 242
D
Sbjct: 239 FPD 241
>gi|320539867|ref|ZP_08039526.1| putative conserved protein [Serratia symbiotica str. Tucson]
gi|320030053|gb|EFW12073.1| putative conserved protein [Serratia symbiotica str. Tucson]
Length = 247
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD+N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMESI--IYEGYGPGGTAVMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GAED + D+ I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITYAPGVDEDALMEAALEAGAEDIVSYDDDVIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L GF AE++ I M P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGALKDALTAAGFNAEAAEIAMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|117923793|ref|YP_864410.1| hypothetical protein Mmc1_0479 [Magnetococcus marinus MC-1]
gi|166227286|sp|A0L4W1.1|Y479_MAGSM RecName: Full=Probable transcriptional regulatory protein Mmc1_0479
gi|117607549|gb|ABK43004.1| protein of unknown function DUF28 [Magnetococcus marinus MC-1]
Length = 250
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 151/245 (61%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI TR+++E+ V+ G + TN +LR AI A N
Sbjct: 1 MAGHSKWANIKHRKGAQDAKRGKIFTRLIKEITVSARMGGGDAATNPRLRSAITAARAQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + +AI++ + E +NY EVR+EGY G AIIVDC+T+N RTV+++R+IFN
Sbjct: 61 LPKDTMDKAIKRGTGEL--EGVNYEEVRFEGYGPGGVAIIVDCLTDNNNRTVADVRHIFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ G V FMF GQ++F ++ +++ ALE GAED + + D+ ++T P
Sbjct: 119 KYGGNMGTHGCVAFMFDKKGQIMFDAEGINEDAIIEAALEAGAEDVVHEGDS-FEVLTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSG-IVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F ++ +L GF S +VMRP + +A + KL +L++ DV+ +Y N
Sbjct: 178 NDFSDVLEALATAGFATPSEAEVVMRPQNLQQLDEQQASTMLKLYEKLEENEDVQNIYAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDISD 242
>gi|294141124|ref|YP_003557102.1| hypothetical protein SVI_2353 [Shewanella violacea DSS12]
gi|293327593|dbj|BAJ02324.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 248
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NIK +K DAKRGK+ T+ +REL VA G++ D+N +LR AI+K+L N
Sbjct: 1 MAGHSKWDNIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDADSNPRLRAAIDKSLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTIERAVKRGAGELDGQVLETI--MYEGYGPGGTAVMVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + T ++ ++D ALE GA+D + +D I + TSP
Sbjct: 119 KSGGNLGTDGSVSYLFDKKGIISYGEGTDEDIVMDAALEAGADDVVSHEDGAIDVFTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G ++ ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 179 DFGAVKDALDAAGLESVNAEVTMVPSTKASLDASTAAKFLRLIDNLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|226954206|ref|ZP_03824670.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
gi|226835075|gb|EEH67458.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
Length = 279
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 156/240 (65%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 31 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGG-PDAASNPRLRAVVEKALSV 89
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ +N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 90 NMTRDTINRAIQRGAGGEENDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 147
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++++ALE GA+D +D+D+ I +ITSP
Sbjct: 148 SKTNGNLGTNGSVAYLFTKRGEISFEDVSLEDKIMEVALEAGADDIEVDEDS-ILVITSP 206
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F E++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 207 ESFGEVQDALAAAGLKSDNAEVVMSPSTKAEITDVDQAKQIMKMIDMLEDLDDVQNVYTN 266
>gi|238762971|ref|ZP_04623938.1| hypothetical protein ykris0001_38920 [Yersinia kristensenii ATCC
33638]
gi|238698729|gb|EEP91479.1| hypothetical protein ykris0001_38920 [Yersinia kristensenii ATCC
33638]
Length = 247
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ ++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDAVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVSLIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|445445754|ref|ZP_21443195.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-92]
gi|444760949|gb|ELW85377.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-A-92]
Length = 249
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G +P +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGADPASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGVGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++D+ALE GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFDDVSLEDKIMDVALEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P D +A ++ KL++ L+ L DV+ VYTN
Sbjct: 178 TFGEVQDALAAAGLKSDNAEVVMSPSNKAEITDIDQAKQVMKLIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|89094834|ref|ZP_01167767.1| hypothetical protein MED92_08732 [Neptuniibacter caesariensis]
gi|89080889|gb|EAR60128.1| hypothetical protein MED92_08732 [Oceanospirillum sp. MED92]
Length = 246
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL V A G NPD N +LR A++KAL AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELVVSAKEGGGNPDDNPRLRAAVDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AIQ+ ++E+ Y E+ YEGY NGAAI+V+C+T+N RTV+ +R FN
Sbjct: 61 MKRDTIDKAIQRGAGGGEDEH--YDELTYEGYGSNGAAILVECMTDNVNRTVAAVRAAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F GQ+ F + + +++D ALE GAED + ++D I + +
Sbjct: 119 KYNGNLGTSGSVAYLFDKKGQITFADDVDEESIMDAALELGAEDVVANEDGSIDVFSDWH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F+++K L GF+ + + M P T + K+ KL++ L L D + VY NA+
Sbjct: 179 DFLDVKQGLLDAGFEPVHAEVAMIPTTTVELDVDTGRKVMKLIDVLDDLDDSQNVYHNAV 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|238783296|ref|ZP_04627321.1| hypothetical protein yberc0001_24050 [Yersinia bercovieri ATCC
43970]
gi|238715889|gb|EEQ07876.1| hypothetical protein yberc0001_24050 [Yersinia bercovieri ATCC
43970]
Length = 247
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ ++D ALE GA+D ++ D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDAVMDAALEAGADDIVVYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVALIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|381404250|ref|ZP_09928934.1| hypothetical protein S7A_08360 [Pantoea sp. Sc1]
gi|380737449|gb|EIB98512.1| hypothetical protein S7A_08360 [Pantoea sp. Sc1]
Length = 247
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+ I YEGY G+AI+++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMDRAIARGVGGDDNANMETI--IYEGYGPGGSAIMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFNKKGVISYAPGQDEDAVMEAALEAGAEDVVSYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGSVRDALEAVGLKADTAEVSMIPTTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|121535576|ref|ZP_01667383.1| protein of unknown function DUF28 [Thermosinus carboxydivorans
Nor1]
gi|121305816|gb|EAX46751.1| protein of unknown function DUF28 [Thermosinus carboxydivorans
Nor1]
Length = 247
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 151/248 (60%), Gaps = 11/248 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K +DA RGKI T++ RE+ VA+ G +P N++L+LA++KA + N
Sbjct: 1 MAGHSKWANIKHRKGKMDALRGKITTKLSREITVAVRMGGADPAGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK NI RAIQK E NY E+ YEGY G A+++D +T+NR RT ++IR++F
Sbjct: 61 IPKENIQRAIQKGLG--AQEGGNYEEMTYEGYGPGGVAVMLDIMTDNRNRTAADIRHLFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-----KKNTLLDLALEKGAEDFLIDKDNKITI 174
K GGNL + G V +MFK G F+ N + ++ L LE GAEDF +D + I
Sbjct: 119 KYGGNLGETGCVSWMFKKKG--FFVVNASEAKVSEEDMMMLVLEAGAEDFR-SEDGQYEI 175
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
IT+P F ++ +L+ ++ I M P T + +A K+ KL++ L++ DV+ V
Sbjct: 176 ITAPEDFEAVQQALQAHNIATATAEITMLPDTTVALSGDDAAKMMKLMDALEEHDDVQNV 235
Query: 235 YTNALIFD 242
Y N I D
Sbjct: 236 YANFDIPD 243
>gi|224367519|ref|YP_002601682.1| hypothetical protein HRM2_04000 [Desulfobacterium autotrophicum
HRM2]
gi|259647138|sp|C0QGP3.1|Y400_DESAH RecName: Full=Probable transcriptional regulatory protein
HRM2_04000
gi|223690235|gb|ACN13518.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 247
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK DAKRGKI T++++E+ VA G D+N +LR A+ A N
Sbjct: 1 MSGHSKWSTIKHKKGAADAKRGKIFTKLIKEITVAARMGGGDIDSNPRLRGAVAAAKAQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K ++ E ++Y E+ YEGY G AI+V+C+T+N+ RT++++R IF+
Sbjct: 61 MPKDNLERAIKKGTGDL--EGVDYEEILYEGYGPGGVAILVECLTDNKNRTIADVRYIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ +G V +MF G + + + ++TL+++ LE GAED + D+ + IIT P
Sbjct: 119 KAGGNIGTDGCVAWMFDKKGLITISKEESDEDTLMEVGLEAGAED-VTDEGDCFEIITDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F +K ++E G K E + + M P T + EA ++ + ++ L D++K Y+NA
Sbjct: 178 ADFDAVKGAVEAAGIKIEMAEVTMIPQTQTRLEGKEAEQMVRFMDALDDCDDIQKFYSNA 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|91793241|ref|YP_562892.1| hypothetical protein Sden_1886 [Shewanella denitrificans OS217]
gi|91715243|gb|ABE55169.1| protein of unknown function DUF28 [Shewanella denitrificans OS217]
Length = 248
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+ +REL VA G++PD N +LR AI+K+L N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKLFTKFIRELTVAAREGGSDPDANPRLRAAIDKSLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+NR RTVS +RN FN
Sbjct: 61 MTRDTVERAIKRGAGELDGQQLETI--IYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + F + ++ L++ ALE GAED + D + ++TSP
Sbjct: 119 KSGGNLGTDGSVAYLFTKSGIISFDNSNDEDVLMEQALEAGAEDVISHDDGSVDVLTSPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ G A ++ + M A K +L++ L+ DV++VY NA
Sbjct: 179 TFGKVKDALDSAGLNALNAEVTMLASLKAELDLETAEKFLRLIDTLEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|28211819|ref|NP_782763.1| hypothetical protein CTC02215 [Clostridium tetani E88]
gi|33517010|sp|Q891Z5.1|Y2215_CLOTE RecName: Full=Probable transcriptional regulatory protein CTC_02215
gi|28204261|gb|AAO36700.1| glucose-1-phosphate adenylyltransferase [Clostridium tetani E88]
Length = 246
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 150/241 (62%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK +DAKRGKI T+I REL +A G+NPDTN KLR I KA N
Sbjct: 1 MSGHSKWHNIQAKKGKMDAKRGKIFTKIGRELIIASKEGGSNPDTNSKLRDVIAKARANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ I RAI+K + E +NY E+ YEGY NG A +V +T+N+ RT N+R F+
Sbjct: 61 MPQDTISRAIKKGAGEL--EGVNYEEMTYEGYGPNGVAFVVSTLTDNKNRTAGNVRAAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL + G V +MF+ GQ++ N ++ ++ +AL+ GAEDF + IIT+
Sbjct: 119 KHGGNLGETGCVGWMFQSKGQMIIERNEDMDEDEIMMVALDAGAEDFE-SSEEVFEIITT 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F E++ LE GF+ S+ + M P T I A LQKL+++L+ DV+ VY N
Sbjct: 178 PESFGEVREKLEAEGFEFISAEVTMIPDTTIEISMERAAGLQKLIDKLEDDDDVQNVYHN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|238788522|ref|ZP_04632315.1| hypothetical protein yfred0001_1880 [Yersinia frederiksenii ATCC
33641]
gi|238723435|gb|EEQ15082.1| hypothetical protein yfred0001_1880 [Yersinia frederiksenii ATCC
33641]
Length = 247
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLAEDAVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVSLIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|118602417|ref|YP_903632.1| hypothetical protein Rmag_0394 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|166229060|sp|A1AW54.1|Y394_RUTMC RecName: Full=Probable transcriptional regulatory protein Rmag_0394
gi|118567356|gb|ABL02161.1| protein of unknown function DUF28 [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 246
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 156/243 (64%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKW NI+ +K DAKRGKI T++++E+ ++ G + N L++ I+KAL N
Sbjct: 1 MAGHSKWHNIQHRKGAQDAKRGKIFTKLIKEIVISAKIGGGRIENNHSLKIIIDKALAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ +N I A+++ N + N Y ++RYEGYS+ G AI+VDC+++NR RT+S+IR+ F
Sbjct: 61 MRRNTIENAVKRGNGDFDGNN--YEKIRYEGYSLGGTAIMVDCLSDNRNRTISDIRHAFL 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL ++GSV ++F G + F +N ++++AL++GA+D + + D+ I +IT+P
Sbjct: 119 KHGGNLGRDGSVSYLFTKQGFISF-DTGNENQIMEIALDEGAQDIITNDDDSIDVITTPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F IK+ L +G + + + M P + + +A K KL++ L+ L + KK+Y NA
Sbjct: 178 DFFTIKDVLTTSGLEPSHAEVTMEPASRVELNLSDAEKFMKLIDHLEDLDETKKIYHNAD 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|378580643|ref|ZP_09829300.1| transcriptional regulator [Pantoea stewartii subsp. stewartii
DC283]
gi|377816967|gb|EHU00066.1| transcriptional regulator [Pantoea stewartii subsp. stewartii
DC283]
Length = 247
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G+AI+++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGSAIMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISYAPGQDEDAVMEAALEAGAEDVVAYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGTVRDALEAAGLKADTAEVAMIPSTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|304396237|ref|ZP_07378119.1| protein of unknown function DUF28 [Pantoea sp. aB]
gi|440757582|ref|ZP_20936766.1| hypothetical protein F385_596 [Pantoea agglomerans 299R]
gi|304356606|gb|EFM20971.1| protein of unknown function DUF28 [Pantoea sp. aB]
gi|436428705|gb|ELP26358.1| hypothetical protein F385_596 [Pantoea agglomerans 299R]
Length = 247
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+ I YEGY G+AI+++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMDRAIARGVGGDDNANMETI--IYEGYGPGGSAIMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ +++ ALE G ED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFNKKGVISFAPGQDEDAVMEAALEAGGEDVVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGTVRDALEALGLKADTAEVAMIPTTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|388456152|ref|ZP_10138447.1| hypothetical protein FdumT_06233 [Fluoribacter dumoffii Tex-KL]
Length = 247
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 151/239 (63%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K + DAKRGKI T+++RE+ VA G ++ N +LR A++KAL AN
Sbjct: 1 MAGHSKWANIKFRKGVQDAKRGKIFTKLIREITVAARMGGGDESSNPRLRDAVKKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I AI++ + E + I +RYEGY G AI+VDC+++N+ RTVS +R+ F
Sbjct: 61 MKRDTIDNAIKRGVGGLDGEAM--IAMRYEGYGPGGIAILVDCLSDNKNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F + G++L P + ++++A++ GA D +D+ +I +IT
Sbjct: 119 KCGGNLGTDGSVAYLFTNQGEILMAPGQSEEQVMEVAIDAGASDVSVDE-GQIEVITPVE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + N+L G + S + MR T + D A L KL++ L+ L DV++VY NA
Sbjct: 178 AYHSVMNALTDAGLDIDQSHLTMRAQTLVPIDDSSAETLLKLIDMLEDLDDVQEVYNNA 236
>gi|262197094|ref|YP_003268303.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262080441|gb|ACY16410.1| protein of unknown function DUF28 [Haliangium ochraceum DSM 14365]
Length = 249
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK VDAKR KI T+I++E++VA G +PD N +LR+A++KA AN
Sbjct: 1 MSGHSKWSTIKRKKAAVDAKRSKIWTKILKEVQVAARMGGADPDGNARLRMAVDKARGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + RAI K + ++ + EV YEGY G A++++C+T+NR RTVS IR+
Sbjct: 61 VPKDTLQRAIDKGSGAGAGDD--WEEVVYEGYGPAGVAVVLECMTDNRNRTVSEIRHSLE 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ GSV +MF G + L + T ++ L+++ALE GAED + D + T+ T P
Sbjct: 119 KFGGNMGTTGSVSWMFNKRGIIHVLKDATSEDKLMEVALEAGAED-VRDDEEVWTVDTEP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S FI ++++L G + E++ I P I + +A L K+L L+ L DV+ VY N
Sbjct: 178 SNFIGVQDALREAGIEVENAEIDNIPDNRIEVPEDKAESLVKMLGTLEDLDDVQNVYANY 237
Query: 239 LIFD 242
+ D
Sbjct: 238 DMSD 241
>gi|238796294|ref|ZP_04639803.1| hypothetical protein ymoll0001_21200 [Yersinia mollaretii ATCC
43969]
gi|238719739|gb|EEQ11546.1| hypothetical protein ymoll0001_21200 [Yersinia mollaretii ATCC
43969]
Length = 247
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ ++D ALE GA+D ++ D I + T
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDAVMDAALEAGADDIVVYDDGAIDVFTPWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L+ TG AE + + + P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALDATGLVAEGAEVSLIPSTKADLDAETAPKLLRLIDMLEDSDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|323702069|ref|ZP_08113737.1| protein of unknown function DUF28 [Desulfotomaculum nigrificans DSM
574]
gi|333923427|ref|YP_004497007.1| hypothetical protein Desca_1235 [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532951|gb|EGB22822.1| protein of unknown function DUF28 [Desulfotomaculum nigrificans DSM
574]
gi|333748988|gb|AEF94095.1| UPF0082 protein yeeN [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 244
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IKRKK +DA+RGKI TR+ +E+ +A G +P N++L+ AIEKA AN
Sbjct: 1 MSGHSKWATIKRKKAKIDAQRGKIFTRLSKEIIIATRIGGPDPSGNMRLKTAIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP NI RAIQK E N+ E YEGY G AI++ T+NR RT +R+IF+
Sbjct: 61 IPNENIQRAIQKGAGG--GEGTNFDEFYYEGYGPGGVAILLKVATDNRNRTAGEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K+GGNL + G V +MFK G ++ N ++ L+ LALE GAED +++D+ I T
Sbjct: 119 KHGGNLGETGCVSWMFKEKGVIIVDRSETNISEDDLMLLALEAGAEDIKVEEDS-FEITT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +++++L G + + M P T + + EA K+QK+++ L+ DV++VYT
Sbjct: 178 APQDFEKVRSALVEQGIPVADAELSMVPDTTVKLQGEEAEKMQKMIDLLEDNDDVQEVYT 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|372277276|ref|ZP_09513312.1| hypothetical protein PSL1_19421 [Pantoea sp. SL1_M5]
gi|390434874|ref|ZP_10223412.1| hypothetical protein PaggI_08582 [Pantoea agglomerans IG1]
Length = 247
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + N N+ I YEGY G+AI+++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMDRAIARGVGGDDNANMETI--IYEGYGPGGSAIMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFNKKGVISYAPGQDEDAVMEAALEAGAEDVVSYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGTVRDALEALGLKADTAEVAMIPTTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|408374573|ref|ZP_11172258.1| hypothetical protein A11A3_10771 [Alcanivorax hongdengensis A-11-3]
gi|407765531|gb|EKF73983.1| hypothetical protein A11A3_10771 [Alcanivorax hongdengensis A-11-3]
Length = 244
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGPEPADNPRLRAAMDKALGQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ ++ N E+ YEGY G A++V+ +T+N RTV+ +R+ F+
Sbjct: 61 MTKDTIDRAIKRGAGG--DDGGNMEEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV F+F G++ F P + L+++ALE GAED D +IT+P
Sbjct: 119 KFAGNLGTSGSVAFLFTKRGEIFFEPGVDEEKLMEVALEAGAEDVEEMNDGSFLVITTPD 178
Query: 180 K-FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
K F E+ ++L G + + + M P T A +QK+++ L+ L DV+ VYTNA
Sbjct: 179 KQFGEVVDALREAGLEFADAEVTMHPSTEAEMDADTAETVQKMIDMLEDLDDVQNVYTNA 238
>gi|406037685|ref|ZP_11045049.1| hypothetical protein AparD1_12189 [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 249
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 152/239 (63%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DA R K+ T+ +RE+ A G +P +N +LR IEKAL N
Sbjct: 1 MAGHSKWANTKHRKAKQDASRAKVFTKYIREIVTAAKLGGGDPASNPRLRAVIEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+Q+ NE++N EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDAINRAVQRGAGGEDNEDLN--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KN GNL GSV ++F G++ F + ++ ++D+ALE GAED + +D I +IT+P
Sbjct: 119 KNNGNLGTSGSVAYLFTKRGEISFEDVSLEDKIMDVALEAGAEDIEVSEDG-ILVITTPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ + L DV+ VYTN
Sbjct: 178 SFGDVQDALNAAGLKSDNAEVVMSPSTKAEITDIDQAKQIMKMIDMFEDLDDVQNVYTN 236
>gi|312962761|ref|ZP_07777249.1| hypothetical protein PFWH6_4683 [Pseudomonas fluorescens WH6]
gi|311282978|gb|EFQ61571.1| hypothetical protein PFWH6_4683 [Pseudomonas fluorescens WH6]
Length = 246
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 155/241 (64%), Gaps = 5/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEG A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGXXXX--AVMVECMTDNRNRTAAAVRHAFS 116
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D + + D I + TS +
Sbjct: 117 KCGGNLGTDGSVAYLFERKGQISFAPGTDEDALMEAAMEADADDVVTNDDGSIDVFTSFA 176
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ K+L+ L+ L DV+ VY+NA
Sbjct: 177 SFYAVRNALETAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNAD 236
Query: 240 I 240
I
Sbjct: 237 I 237
>gi|283832738|ref|ZP_06352479.1| protein YebC [Citrobacter youngae ATCC 29220]
gi|291072421|gb|EFE10530.1| protein YebC [Citrobacter youngae ATCC 29220]
Length = 247
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVTMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|323142286|ref|ZP_08077118.1| DNA-binding regulatory protein, YebC/PmpR family
[Phascolarctobacterium succinatutens YIT 12067]
gi|322413170|gb|EFY04057.1| DNA-binding regulatory protein, YebC/PmpR family
[Phascolarctobacterium succinatutens YIT 12067]
Length = 246
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA RGKI T+I RE+ +A+ G +P N+KL+LA+ KA N
Sbjct: 1 MSGHSKWANIKHKKGKADALRGKITTKISREITIAVRMGGADPTGNMKLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK + E ++ E+ YEGY G A++V C+T+NR RT +++R++F+
Sbjct: 61 IPKDNIQRAIQKGAGAL--EGQSFEEITYEGYGPAGVAMMVSCLTDNRNRTAADVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V +MFK G T ++ L+ +AL+ GAED +D IIT
Sbjct: 119 KHGGNLGASGCVSYMFKQKGIFAVSAETGVSEDDLMMIALDAGAEDIKSSEDG-FEIITD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ + +++ +L + S I M P T +A K+QK+L+ L DV+ VYTN
Sbjct: 178 PAAYDDVEKALADNNIEVAMSEITMVPDTMAELSGEDAEKVQKMLDALDDCDDVQDVYTN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|359430500|ref|ZP_09221507.1| hypothetical protein ACT4_042_00110 [Acinetobacter sp. NBRC 100985]
gi|358234043|dbj|GAB03046.1| hypothetical protein ACT4_042_00110 [Acinetobacter sp. NBRC 100985]
Length = 249
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++++ALE GA+D ID+D+ I +ITSP
Sbjct: 118 SKTNGNLGTNGSVAYLFTKRGEISFEDVSLEDKVMEVALEAGADDIEIDEDS-ILVITSP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGDVQDALTAAGLKSDNAEVVMSPSTKAEINDIDQAKQIMKMIDMLEDLDDVQNVYTN 236
>gi|425746691|ref|ZP_18864715.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-323]
gi|425485330|gb|EKU51724.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-323]
Length = 249
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++++ALE GA+D ID+D+ I +ITSP
Sbjct: 118 SKTNGNLGTNGSVAYLFTKRGEISFDDVSLEDKVMEVALEAGADDIEIDEDS-ILVITSP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGDVQDALTAAGLKSDNAEVVMSPSTKAEITDIDQAKQIMKMIDMLEDLDDVQNVYTN 236
>gi|441502204|ref|ZP_20984215.1| hypothetical protein C942_01330 [Photobacterium sp. AK15]
gi|441429951|gb|ELR67402.1| hypothetical protein C942_01330 [Photobacterium sp. AK15]
Length = 247
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ VA G D N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREIVVAAKEGGPEADNNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++N+ V YEGY G A++V+ +T+NR RTVS +R+ F+
Sbjct: 61 MTRDTVNRAISRGAGGEGDDNMET--VIYEGYGPGGTAVMVETMTDNRNRTVSGVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + ++ +++ ALE GA+D + D I + T+P+
Sbjct: 119 KAGGNLGTDGSVNYLFDKKGVISYATGLDEDAVMEAALEGGADDVETNDDGSIDVYTTPT 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF+A ++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGSVKDALDAAGFEAVNAEVTLVPSTKAELDADTAPKLLRLIDALEDLDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|350562952|ref|ZP_08931775.1| protein of unknown function DUF28 [Thioalkalimicrobium aerophilum
AL3]
gi|349779818|gb|EGZ34159.1| protein of unknown function DUF28 [Thioalkalimicrobium aerophilum
AL3]
Length = 251
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GK+ T+++REL VA G +P+ N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKARQDAKKGKVFTKLIRELVVAAKAGGPHPEDNPRLRAAVDKALREN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I +AI + N E +Y E+RYEGY+ G A++VDC+T+NR RTV +R+ F
Sbjct: 61 MKRDTIDKAIARGAGN--QEGDDYEEIRYEGYAPAGVAVMVDCLTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV +MF G + F P ++ +++ A+E GAED +D D I ++T+P
Sbjct: 119 KKGGNLGTDGSVAYMFVKQGLIQFEPGLAEDAVMEAAIEAGAEDVKVDSDGSIAVVTAPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++L + GF A I M + +A ++ ++ L+ L DV++VYTN
Sbjct: 179 DLHSVADALALAGFAAAQVDINMEADIKVSLDFDDAQRVMAMIEMLEDLDDVQQVYTNLD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|138896161|ref|YP_001126614.1| hypothetical protein GTNG_2524 [Geobacillus thermodenitrificans
NG80-2]
gi|196250115|ref|ZP_03148809.1| protein of unknown function DUF28 [Geobacillus sp. G11MC16]
gi|166228394|sp|A4IRB5.1|Y2524_GEOTN RecName: Full=Probable transcriptional regulatory protein GTNG_2524
gi|134267674|gb|ABO67869.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210299|gb|EDY05064.1| protein of unknown function DUF28 [Geobacillus sp. G11MC16]
Length = 247
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 146/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA N G +P N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKNGGGDPAANPSLRLVIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K N E+ NY E+RYEGY G A++V C+T+N+ RT +N+R+ F+
Sbjct: 61 MPGENIERAIKKATGN--QEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRSAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F+ G L+ N +++ LL LA+E GAE+ + D I T
Sbjct: 119 KNGGNLGETGCVSYLFERKGLLVIDREQHNMEEDELLLLAIEAGAEE-METTDESFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K LE G S+ I M P T E K+ KL++ L+ DV++VY
Sbjct: 178 TPESFETVKEQLEQQGLTFASAEITMIPQTYTTLSGDELKKMLKLIDTLEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|339477831|ref|YP_004706651.1| putative DNA-binding regulatory protein, YebC/PmpR family
[Candidatus Moranella endobia PCIT]
gi|338172382|gb|AEI74783.1| putative DNA-binding regulatory protein, YebC/PmpR family
[Candidatus Moranella endobia PCIT]
Length = 247
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 145/242 (59%), Gaps = 5/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+R L A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRSLVTAAKLGGGDLGSNSRLRTAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIE-VRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ + + RAI + + +++ ++E + YEGY G A++V+C+++NR RTVS +RN F
Sbjct: 61 MTRETLNRAIARG---VGSDDETHMETINYEGYGPGGTAVMVECLSDNRNRTVSEVRNAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNLS +GSV ++F G L F P ++ ++D ALE GA+D + D I + T P
Sbjct: 118 TKHGGNLSTDGSVSYLFTKRGVLSFAPGLSEDAVIDSALESGADDVITYDDGAIDVYTQP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++K +LE G ES+ + + P T + A KL +L++ L+ DV+ VY N
Sbjct: 178 ESVGKVKETLEAAGLTPESAEVALIPSTRVNLDAESAPKLLRLIDMLEDSDDVQDVYHNG 237
Query: 239 LI 240
I
Sbjct: 238 EI 239
>gi|319786203|ref|YP_004145678.1| hypothetical protein Psesu_0589 [Pseudoxanthomonas suwonensis 11-1]
gi|317464715|gb|ADV26447.1| protein of unknown function DUF28 [Pseudoxanthomonas suwonensis
11-1]
Length = 241
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 150/240 (62%), Gaps = 4/240 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+++RE+ VA G +P N +LR A++K+L +N+ K+
Sbjct: 2 GRGPSIEARKNATDAKRGKIFTKLIREIGVAARAGGGDPANNPRLRAAVDKSLASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L + + + + A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTEGSVSFMFKRLGVLSYEAGADEEKITEAAIEGGADDVVVYPEDGAIDVVTAPENFD 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIFD 242
+K +LE G + I R +I A ++QKLL+ L+ L DV+ VY+NA + D
Sbjct: 180 AVKQALEAAGLAPGYAEITFRADNDIAVSGETAQQVQKLLHMLEDLDDVQNVYSNADLGD 239
>gi|293608324|ref|ZP_06690627.1| hypothetical protein HMPREF0013_00452 [Acinetobacter sp. SH024]
gi|375134497|ref|YP_004995147.1| hypothetical protein BDGL_000879 [Acinetobacter calcoaceticus
PHEA-2]
gi|427422834|ref|ZP_18913008.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-136]
gi|292828897|gb|EFF87259.1| hypothetical protein HMPREF0013_00452 [Acinetobacter sp. SH024]
gi|325121942|gb|ADY81465.1| hypothetical protein BDGL_000879 [Acinetobacter calcoaceticus
PHEA-2]
gi|425700469|gb|EKU70052.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-136]
Length = 249
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G +P +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGGDPASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++++ALE GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVSYLFTKRGEITFEDVSLEDKIMEVALEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P T D +A ++ K+++ + L DV+ VYTN
Sbjct: 178 TFGEVQDALTAAGLKSDNAEVVMSPSTKAEITDVDQAKQILKMIDMFEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|402758814|ref|ZP_10861070.1| hypothetical protein ANCT7_14108 [Acinetobacter sp. NCTC 7422]
Length = 249
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 154/240 (64%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++++ALE GA+D ID+D I +ITSP
Sbjct: 118 SKTNGNLGTNGSVAYLFTKRGEISFEDVSLEDKVMEVALEAGADDIEIDEDT-ILVITSP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGDVQDALTAAGLKSDNAEVVMSPSTKAEINDIDQAKQIMKMIDMLEDLDDVQNVYTN 236
>gi|416168919|ref|ZP_11608077.1| hypothetical protein NMBOX9930304_0536, partial [Neisseria
meningitidis OX99.30304]
gi|325130683|gb|EGC53423.1| hypothetical protein NMBOX9930304_0536 [Neisseria meningitidis
OX99.30304]
Length = 167
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 120/166 (72%), Gaps = 3/166 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ KK DAKRGKI TR+++E+ VA G +P N +LRLA+EKA + N
Sbjct: 1 MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPGANPRLRLALEKAAENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV+++R+ F
Sbjct: 61 MPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTVADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFL 165
KNGGNL +G V F F H G L+F P ++ L++ ALE GAED +
Sbjct: 119 KNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVV 164
>gi|262372335|ref|ZP_06065614.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262312360|gb|EEY93445.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 249
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTASRLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ EV YEGY V G A+IV+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + ++ ++++ALE GA+D ID+D+ I +ITSP
Sbjct: 118 SKTNGNLGTNGSVAYLFTKRGEISFDDVSLEDKVMEVALEAGADDIEIDEDS-ILVITSP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGDVQDALTAAGLKSDNAEVVMSPSTKAEINDIDQAKQIMKMIDMLEDLDDVQNVYTN 236
>gi|307545149|ref|YP_003897628.1| hypothetical protein HELO_2559 [Halomonas elongata DSM 2581]
gi|307217173|emb|CBV42443.1| hypothetical protein HELO_2559 [Halomonas elongata DSM 2581]
Length = 250
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 146/244 (59%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVAARHGGGEPNDNPRLRAAIDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RA+ + N + +++ EV YEGY G A++V+ +T+NR RTVS +R+ FN
Sbjct: 61 MTKDTIQRAVDRGAGNSEGDDME--EVVYEGYGPEGVAVMVEAMTDNRNRTVSEVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV FMF G+L + ++ LE E+ +D ++ ++TSP
Sbjct: 119 KQGGNLGTTGSVAFMFHRQGRLTLPEGATEEAAMEATLEAEPEEIETLEDGRLEVVTSPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F +K++L G + +S + + P +D E ++ KL++ L+ L DV+ VYTNA
Sbjct: 179 SFGAVKDALVEAGLEPTASDVGLYPDNYARIEDVELGQRIIKLVDRLEDLDDVQNVYTNA 238
Query: 239 LIFD 242
D
Sbjct: 239 DFAD 242
>gi|322420880|ref|YP_004200103.1| hypothetical protein GM18_3392 [Geobacter sp. M18]
gi|320127267|gb|ADW14827.1| protein of unknown function DUF28 [Geobacter sp. M18]
Length = 247
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 153/238 (64%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGK+ T++++E+ VA G + D N +LR AI+KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKVFTKLIKEITVAAKLGGGDADGNPRLRTAIDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + E +NY E YEGY G A++V+ +T+NR RTVS +R+IF+
Sbjct: 61 MPKDNVERAIKKGVGGL--EGVNYEETTYEGYGPGGTAVLVEVMTDNRNRTVSEVRSIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V ++F G L+F +T + L + ++E GA+D + ++D + ++T P+
Sbjct: 119 KCNGNMGETGCVSWLFDKKGLLVFPKSTDFDKLFEASIEAGADD-VTNEDEQYEVLTDPT 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++K +LE GFKAE++ I M P T + + A + KL++ ++ DV+ VY N
Sbjct: 178 AFHQVKTALEEAGFKAENAEITMIPQTMVKLEGKNAENMLKLMDRMEDNDDVQNVYAN 235
>gi|270262225|ref|ZP_06190497.1| hypothetical protein SOD_b04330 [Serratia odorifera 4Rx13]
gi|421783957|ref|ZP_16220400.1| hypothetical protein B194_3008 [Serratia plymuthica A30]
gi|270044101|gb|EFA17193.1| hypothetical protein SOD_b04330 [Serratia odorifera 4Rx13]
gi|407753820|gb|EKF63960.1| hypothetical protein B194_3008 [Serratia plymuthica A30]
Length = 247
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITYAPGLDEDAVMEAALEAGAEDIVSYDDGVIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++L GF A+S+ + M P T + A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALTAAGFTADSAEVSMIPSTKADMDEETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|385788596|ref|YP_005819705.1| hypothetical protein EJP617_31370 [Erwinia sp. Ejp617]
gi|310767868|gb|ADP12818.1| hypothetical protein EJP617_31370 [Erwinia sp. Ejp617]
Length = 247
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F+
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTRKGVISYAPGLNEDTVMDAALEAGADDVVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K+ L+ G +AESS + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NMGAVKDVLDAAGLQAESSEVTMIPSTKADMDMETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|427405777|ref|ZP_18895982.1| YebC/PmpR family DNA-binding regulatory protein [Selenomonas sp.
F0473]
gi|425708618|gb|EKU71657.1| YebC/PmpR family DNA-binding regulatory protein [Selenomonas sp.
F0473]
Length = 242
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 151/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY EV YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATEGSNYDEVVYEGYGPGGTAVLLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL ++G V +MFK + ++ ++ LL+L L+ GAED ++D II +
Sbjct: 119 KYGGNLGQDGCVSWMFKKKAVFIVEKDSFNDEDALLELVLDAGAEDMRAEED-IFEIIAA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F I+ +L G + S+ + M P T + + +A K+Q L++ L+ DV+ VY+N
Sbjct: 178 PDTFESIETALGEKGIETASAEVTMVPDTTVSLSENDAEKMQNLIDALEDNDDVQNVYSN 237
>gi|325918025|ref|ZP_08180188.1| hypothetical protein TIGR01033 [Xanthomonas vesicatoria ATCC 35937]
gi|325535758|gb|EGD07591.1| hypothetical protein TIGR01033 [Xanthomonas vesicatoria ATCC 35937]
Length = 242
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 153/235 (65%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L AN+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F + ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGSDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPEAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++K++L G + + I R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVKDALAAAGLEPAHAEITFRAENDIAVDGDTAVQVRKLLDILEDLDDVQDVYSN 234
>gi|313895671|ref|ZP_07829227.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320528950|ref|ZP_08030042.1| conserved hypothetical protein TIGR01033 [Selenomonas artemidis
F0399]
gi|402301939|ref|ZP_10821061.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC9]
gi|312975797|gb|EFR41256.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320138580|gb|EFW30470.1| conserved hypothetical protein TIGR01033 [Selenomonas artemidis
F0399]
gi|400381324|gb|EJP34126.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC9]
Length = 241
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 151/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY EV YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATEGSNYEEVVYEGYGPGGTAVLLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL ++G V +MFK + ++ ++ LL+L LE GAED +D+ I+ +
Sbjct: 119 KYGGNLGQDGCVAWMFKKKAVFIVEKDSFDDEDALLELVLEAGAEDMRA-EDDVFEIVAA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F I+ +L G + S+ + M P T + + +A K+Q L++ L+ DV+ VY+N
Sbjct: 178 PDAFESIETALGDKGIETVSAEVTMVPDTMVSLSEKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|85712316|ref|ZP_01043367.1| Uncharacterized conserved enzyme [Idiomarina baltica OS145]
gi|85693943|gb|EAQ31890.1| Uncharacterized conserved enzyme [Idiomarina baltica OS145]
Length = 249
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 156/243 (64%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ V A G +P+TN +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITVSARQGGGDPETNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ + ++ EN+ E+ YEGY +G AI+++C+T+NR RTVS +R+ FN
Sbjct: 61 MKRDTIDTAVKRGSGELEGENVE--ELTYEGYGPSGVAILLECMTDNRNRTVSEVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL +GSV ++F G + + T + T+L+ A+E GA+D L D I + TSP
Sbjct: 119 KFNGNLGTDGSVAYLFNKRGVISYGSETSEETILEPAIEAGADDVLNHGDGHIDVFTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ TG +A ++ + M P T + + A KLL+ L+ L DV+ Y NA
Sbjct: 179 VFGAVKDALDATGAEATNAEVTMVPDTKVDLDEDGARTFLKLLDALEDLDDVQNAYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|157371019|ref|YP_001479008.1| hypothetical protein Spro_2779 [Serratia proteamaculans 568]
gi|333927720|ref|YP_004501299.1| hypothetical protein SerAS12_2873 [Serratia sp. AS12]
gi|333932674|ref|YP_004506252.1| hypothetical protein SerAS9_2872 [Serratia plymuthica AS9]
gi|386329543|ref|YP_006025713.1| hypothetical protein [Serratia sp. AS13]
gi|166988611|sp|A8GFJ0.1|Y2779_SERP5 RecName: Full=Probable transcriptional regulatory protein Spro_2779
gi|157322783|gb|ABV41880.1| protein of unknown function DUF28 [Serratia proteamaculans 568]
gi|333474281|gb|AEF45991.1| protein of unknown function DUF28 [Serratia plymuthica AS9]
gi|333491780|gb|AEF50942.1| protein of unknown function DUF28 [Serratia sp. AS12]
gi|333961876|gb|AEG28649.1| protein of unknown function DUF28 [Serratia sp. AS13]
Length = 247
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITYAPGLDEDVVMEAALEAGAEDIVSYDDGVIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++L GF A+S+ + M P T + A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALTAAGFTADSAEVSMIPSTKADMDEETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|225848858|ref|YP_002729022.1| hypothetical protein SULAZ_1049 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644599|gb|ACN99649.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 251
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 151/241 (62%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NIK KK +DA RGKI T++++E+ VA G +P+ N +LR+AIEKA + N
Sbjct: 1 MAGHSKWHNIKNKKAKMDAIRGKIFTKVIKEITVAARLGGGDPEANPRLRMAIEKAKEVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + E +NY EVRYEGY G AIIV+ T+NR RT + +R+IF+
Sbjct: 61 MPSENIERAIKRGTGEL--EGVNYEEVRYEGYGPEGVAIIVEATTDNRNRTTAEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V F+F+ G ++ + +K + +L+ ALE GAED + D ++ I TS
Sbjct: 119 KYGGNLGSSGCVSFLFEDKG-VINVEKSKYSEEEILEKALEAGAEDVITDDEDYYEIRTS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
F ++K +LE G + + + P T + + E A KL KLL+ L+ DV+KVY
Sbjct: 178 VQDFYKVKENLEKMGVEIARAELTKIPTTTVKITNEETATKLMKLLDALEDNDDVQKVYA 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|416421661|ref|ZP_11689659.1| hypothetical protein SEEM315_16039 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416433735|ref|ZP_11697158.1| hypothetical protein SEEM971_05408 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416436556|ref|ZP_11698358.1| hypothetical protein SEEM973_09207 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416449018|ref|ZP_11706669.1| hypothetical protein SEEM974_06015 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416452337|ref|ZP_11708888.1| hypothetical protein SEEM201_06708 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416456506|ref|ZP_11711510.1| hypothetical protein SEEM202_10408 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416469385|ref|ZP_11718497.1| hypothetical protein SEEM954_10722 [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416481725|ref|ZP_11723459.1| hypothetical protein SEEM054_02947 [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416491034|ref|ZP_11726926.1| hypothetical protein SEEM675_03606 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416498168|ref|ZP_11730094.1| hypothetical protein SEEM965_14328 [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416542602|ref|ZP_11751668.1| hypothetical protein SEEM19N_06216 [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416579305|ref|ZP_11771163.1| hypothetical protein SEEM801_19092 [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416585176|ref|ZP_11774729.1| hypothetical protein SEEM507_21561 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416589938|ref|ZP_11777454.1| hypothetical protein SEEM877_13418 [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416601234|ref|ZP_11784898.1| hypothetical protein SEEM867_03722 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604356|ref|ZP_11786116.1| hypothetical protein SEEM180_10987 [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612031|ref|ZP_11791210.1| hypothetical protein SEEM600_18980 [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416619502|ref|ZP_11795164.1| hypothetical protein SEEM581_09044 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416629478|ref|ZP_11800142.1| hypothetical protein SEEM501_00615 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416638802|ref|ZP_11804170.1| hypothetical protein SEEM460_06835 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416651718|ref|ZP_11811235.1| hypothetical protein SEEM020_014715 [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416666427|ref|ZP_11817501.1| hypothetical protein SEEM0077_21392 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416677004|ref|ZP_11822108.1| hypothetical protein SEEM0047_10500 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416699356|ref|ZP_11828632.1| hypothetical protein SEEM0055_06011 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416705015|ref|ZP_11830627.1| hypothetical protein SEEM0052_14766 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416711003|ref|ZP_11834961.1| hypothetical protein SEEM3312_13729 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716871|ref|ZP_11839163.1| hypothetical protein SEEM5258_11026 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416722006|ref|ZP_11843065.1| hypothetical protein SEEM1156_16671 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416731579|ref|ZP_11849462.1| hypothetical protein SEEM9199_00854 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416737391|ref|ZP_11852623.1| hypothetical protein SEEM8282_15583 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416751152|ref|ZP_11860006.1| hypothetical protein SEEM8283_09076 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416758744|ref|ZP_11863842.1| hypothetical protein SEEM8284_21635 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416762304|ref|ZP_11866300.1| hypothetical protein SEEM8285_19099 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416771672|ref|ZP_11872907.1| hypothetical protein SEEM8287_03882 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418484078|ref|ZP_13053082.1| hypothetical protein SEEM906_02365 [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490937|ref|ZP_13057468.1| hypothetical protein SEEM5278_12841 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418493741|ref|ZP_13060203.1| hypothetical protein SEEM5318_04752 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418497596|ref|ZP_13064013.1| hypothetical protein SEEM5320_03375 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418502329|ref|ZP_13068701.1| hypothetical protein SEEM5321_11012 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418509513|ref|ZP_13075807.1| hypothetical protein SEEM5327_18430 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418527732|ref|ZP_13093688.1| hypothetical protein SEEM8286_10456 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|322616899|gb|EFY13807.1| hypothetical protein SEEM315_16039 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618137|gb|EFY15029.1| hypothetical protein SEEM971_05408 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625808|gb|EFY22627.1| hypothetical protein SEEM973_09207 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626260|gb|EFY23070.1| hypothetical protein SEEM974_06015 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632674|gb|EFY29419.1| hypothetical protein SEEM201_06708 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639018|gb|EFY35711.1| hypothetical protein SEEM202_10408 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640458|gb|EFY37111.1| hypothetical protein SEEM954_10722 [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644223|gb|EFY40768.1| hypothetical protein SEEM054_02947 [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649545|gb|EFY45977.1| hypothetical protein SEEM675_03606 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655453|gb|EFY51761.1| hypothetical protein SEEM965_14328 [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660232|gb|EFY56470.1| hypothetical protein SEEM19N_06216 [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662913|gb|EFY59120.1| hypothetical protein SEEM801_19092 [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668098|gb|EFY64257.1| hypothetical protein SEEM507_21561 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674142|gb|EFY70236.1| hypothetical protein SEEM877_13418 [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675504|gb|EFY71578.1| hypothetical protein SEEM867_03722 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683082|gb|EFY79098.1| hypothetical protein SEEM180_10987 [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686776|gb|EFY82754.1| hypothetical protein SEEM600_18980 [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195333|gb|EFZ80513.1| hypothetical protein SEEM581_09044 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199225|gb|EFZ84320.1| hypothetical protein SEEM501_00615 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204050|gb|EFZ89065.1| hypothetical protein SEEM460_06835 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323217465|gb|EGA02184.1| hypothetical protein SEEM0077_21392 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221956|gb|EGA06346.1| hypothetical protein SEEM0047_10500 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224434|gb|EGA08722.1| hypothetical protein SEEM0055_06011 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231487|gb|EGA15600.1| hypothetical protein SEEM0052_14766 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323235929|gb|EGA20008.1| hypothetical protein SEEM3312_13729 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240499|gb|EGA24542.1| hypothetical protein SEEM5258_11026 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245391|gb|EGA29391.1| hypothetical protein SEEM1156_16671 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247811|gb|EGA31749.1| hypothetical protein SEEM9199_00854 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253610|gb|EGA37438.1| hypothetical protein SEEM8282_15583 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255039|gb|EGA38827.1| hypothetical protein SEEM8283_09076 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260272|gb|EGA43893.1| hypothetical protein SEEM8284_21635 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266863|gb|EGA50349.1| hypothetical protein SEEM8285_19099 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269069|gb|EGA52525.1| hypothetical protein SEEM8287_03882 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|366059863|gb|EHN24130.1| hypothetical protein SEEM906_02365 [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366063886|gb|EHN28097.1| hypothetical protein SEEM5318_04752 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366064053|gb|EHN28262.1| hypothetical protein SEEM5278_12841 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366075353|gb|EHN39410.1| hypothetical protein SEEM5320_03375 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366075685|gb|EHN39737.1| hypothetical protein SEEM5321_11012 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366078220|gb|EHN42225.1| hypothetical protein SEEM5327_18430 [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366827465|gb|EHN54371.1| hypothetical protein SEEM020_014715 [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372204360|gb|EHP17888.1| hypothetical protein SEEM8286_10456 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 246
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--TYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|118581084|ref|YP_902334.1| hypothetical protein Ppro_2673 [Pelobacter propionicus DSM 2379]
gi|166228423|sp|A1ASF6.1|Y2673_PELPD RecName: Full=Probable transcriptional regulatory protein Ppro_2673
gi|118503794|gb|ABL00277.1| protein of unknown function DUF28 [Pelobacter propionicus DSM 2379]
Length = 247
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGK+ T++++E+ VA G +P N +LR A++KA N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKVFTKLIKEISVAAKLGGGDPAANPRLRTAVDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E + Y E+ YEGY GAA++V+ +T+NR R+VS IR+IF
Sbjct: 61 MPKDNIERAIKKGAGGM--EGVTYEEIVYEGYGPGGAAVLVEVMTDNRNRSVSEIRSIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V +MF G + F L + A+E GAED + ++D + + T PS
Sbjct: 119 KANGNMGEAGCVAWMFSKKGLITFDKGLDFEQLFEAAIEAGAED-VSEEDEQFEVTTDPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
FIE++ +L GF ++ + M P T + + +A + KL+++L+ DV+ VY+N
Sbjct: 178 SFIEVREALVAKGFSFANAEVTMIPQTMVALEGKQAESMLKLMDKLEDNDDVQNVYSN 235
>gi|331647461|ref|ZP_08348553.1| protein YebC [Escherichia coli M605]
gi|331043185|gb|EGI15323.1| protein YebC [Escherichia coli M605]
Length = 246
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY +G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPSGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|340357232|ref|ZP_08679854.1| glucose-1-phosphate adenylyltransferase [Sporosarcina newyorkensis
2681]
gi|339617999|gb|EGQ22602.1| glucose-1-phosphate adenylyltransferase [Sporosarcina newyorkensis
2681]
Length = 240
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 150/242 (61%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+ +K DAKRGKI ++ RE+ VA + G++PDTN LRLAI+K+ AN
Sbjct: 1 MAGHSKWKNIQNRKGAQDAKRGKIFQKMSREIYVAAKSGGDDPDTNPALRLAIDKSKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I RAI K +EN Y EV YEGY G A++V C+T NR RT NIR FN
Sbjct: 61 VPNDVIQRAIDKATGAGADEN--YEEVIYEGYGPGGVAVLVYCLTENRNRTGPNIRVAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGG+L + GSV ++F+ G+ LF+ T ++ ++ LALE GAED L +D I+T
Sbjct: 119 KNGGSLGESGSVNYLFERKGR-LFIERTAEIDEDAIMLLALEAGAEDILSTEDG-FEILT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
PS+F+ +K +LE F S+ + M P D + + +K+++ L+ DV+ VY
Sbjct: 177 EPSEFLTVKEALEAEAFTFVSAEVDMVPSVYAELSDEQEEQFEKMIDTLEDDDDVQNVYH 236
Query: 237 NA 238
NA
Sbjct: 237 NA 238
>gi|398796711|ref|ZP_10556198.1| DNA-binding regulatory protein, YebC/PmpR family [Pantoea sp.
YR343]
gi|398202713|gb|EJM89552.1| DNA-binding regulatory protein, YebC/PmpR family [Pantoea sp.
YR343]
Length = 247
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G+A++++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGSAVMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISFAPGQDEDAVMEAALEAGAEDVVAYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGAVRDALEAGGLKADSAEVSMIPSTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|255020122|ref|ZP_05292192.1| hypothetical protein ACA_1331 [Acidithiobacillus caldus ATCC 51756]
gi|340783535|ref|YP_004750142.1| hypothetical protein Atc_2794 [Acidithiobacillus caldus SM-1]
gi|254970415|gb|EET27907.1| hypothetical protein ACA_1331 [Acidithiobacillus caldus ATCC 51756]
gi|340557686|gb|AEK59440.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
Length = 250
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI TR++RE+ VA G + +N +LR A++KA N
Sbjct: 1 MAGHSKWANIKFRKAAQDAKKGKIFTRLIREITVAARAGGGDASSNPRLRTALDKAYANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI++ + E ++Y EV YEGY +G AI+++ +T+NR+RTV+ IR+IF+
Sbjct: 61 MAKDTVERAIKRGTGEL--EGVDYEEVTYEGYGPSGVAILIETMTDNRVRTVAEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV ++F+ G + + ++ +L+ ALE GAED ++ +D +I + T +
Sbjct: 119 KRGGNLGTSGSVAYLFQRRGMISLAADVGEDRVLEAALEAGAED-VVTEDGRIVVYTEAT 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +L+ G E + M P T + +A KL +LL L++ DV+ VY N
Sbjct: 178 ALHGVAEALQNAGLTPEEIELTMIPETTVEVSGDDADKLMRLLEALEENDDVQNVYANYS 237
Query: 240 IFD 242
+ D
Sbjct: 238 LSD 240
>gi|238926804|ref|ZP_04658564.1| protein of hypothetical function DUF28 [Selenomonas flueggei ATCC
43531]
gi|238885336|gb|EEQ48974.1| protein of hypothetical function DUF28 [Selenomonas flueggei ATCC
43531]
Length = 242
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 150/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGADPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY EV YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATEGSNYEEVIYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL ++G V +MFK + +T ++ LL+L LE GAED + +D+ II
Sbjct: 119 KYGGNLGQDGCVSWMFKKKAVFVVERDTFDDEDALLELVLEAGAED-MRSEDDVFEIIAE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + I+ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY+N
Sbjct: 178 PDAYDAIETVLGEKGIETASAEVTMVPDTTVHLVDKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|416278647|ref|ZP_11644651.1| hypothetical protein SGB_00148 [Shigella boydii ATCC 9905]
gi|417671948|ref|ZP_12321430.1| hypothetical protein SD15574_1533 [Shigella dysenteriae 155-74]
gi|417689903|ref|ZP_12339131.1| hypothetical protein SB521682_2156 [Shigella boydii 5216-82]
gi|420347167|ref|ZP_14848569.1| hypothetical protein SB96558_2112 [Shigella boydii 965-58]
gi|320182598|gb|EFW57487.1| hypothetical protein SGB_00148 [Shigella boydii ATCC 9905]
gi|332090041|gb|EGI95141.1| hypothetical protein SB521682_2156 [Shigella boydii 5216-82]
gi|332095261|gb|EGJ00288.1| hypothetical protein SD15574_1533 [Shigella dysenteriae 155-74]
gi|391271691|gb|EIQ30559.1| hypothetical protein SB96558_2112 [Shigella boydii 965-58]
Length = 246
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE +G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEASGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|383762210|ref|YP_005441192.1| hypothetical protein CLDAP_12550 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381382478|dbj|BAL99294.1| hypothetical protein CLDAP_12550 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 256
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 144/245 (58%), Gaps = 9/245 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW+ IKRKK VDA RGK+ TR+ RE++VA G +P N LRLAIE+A N+
Sbjct: 1 MSGHSKWSTIKRKKGAVDAARGKLFTRLAREIQVAARNGADPAANFTLRLAIERARAENM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
PK NI RAI++ K+ N V YEGY +G AI+V+C+T+NR RT+S +R F K
Sbjct: 61 PKENIERAIRRGAGLDKDYTDNIETVIYEGYGPHGVAILVECLTDNRNRTISEVRRTFTK 120
Query: 121 NGGNLSKEGSVLFMFKHCGQLLF-------LP-NTKKNTLLDLALEKGAEDFLIDKDNKI 172
G+L + GSV + F G LLF P + + L A+E GAED I +D +
Sbjct: 121 GNGSLGEPGSVAWQFTEKGYLLFSRVNEDGQPISLDPDELFMAAIESGAEDVEISED-AV 179
Query: 173 TIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVK 232
+ T + F ++ +LE G++A + ++M+P I EA + L+ L++L DV
Sbjct: 180 EVYTERTNFAQVSQALEERGYRASQAELIMKPNNTIELSPEEAASVLNLVEALEELDDVN 239
Query: 233 KVYTN 237
KVY N
Sbjct: 240 KVYHN 244
>gi|82776450|ref|YP_402799.1| hypothetical protein SDY_1151 [Shigella dysenteriae Sd197]
gi|309789260|ref|ZP_07683853.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|119392018|sp|Q32H97.1|YEBC_SHIDS RecName: Full=Probable transcriptional regulatory protein YebC
gi|81240598|gb|ABB61308.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308923014|gb|EFP68528.1| conserved hypothetical protein [Shigella dysenteriae 1617]
Length = 246
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMLPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|386822463|ref|ZP_10109676.1| hypothetical protein Q5A_00015 [Serratia plymuthica PRI-2C]
gi|386380630|gb|EIJ21354.1| hypothetical protein Q5A_00015 [Serratia plymuthica PRI-2C]
Length = 247
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K D+KRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDSKRGKIFTKIIRELVTAAKLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DDDTNMETIIYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITYAPGLDEDVVMEAALEAGAEDIVSYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
E+K++L GF A+++ + M P T + A KL +L++ L+ DV++VY N
Sbjct: 179 NLGEVKDALTAAGFTADAAEVSMIPSTKADMDEETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|440781780|ref|ZP_20960008.1| hypothetical protein F502_07568 [Clostridium pasteurianum DSM 525]
gi|440220498|gb|ELP59705.1| hypothetical protein F502_07568 [Clostridium pasteurianum DSM 525]
Length = 245
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 153/242 (63%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ KK DA+RGKI T+I +E+ VA G+NPDTN KLR I KA N+
Sbjct: 1 MSGHSKWHNIQAKKGKADAQRGKIFTKIGKEIAVASKAGSNPDTNAKLRDVIAKAKANNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P++ I RAI+K + E +NY E+ YEGY G A+IV+ +T+N+ R+ N+R IF++
Sbjct: 61 PQDTITRAIKKGAGEL--EGVNYEEIVYEGYGPAGVAVIVNVLTDNKNRSAGNVRYIFDR 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFL--PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
NGGNL G V FMF+ GQ++ ++ ++ AL+ GAEDF +++ I T+
Sbjct: 119 NGGNLGANGCVSFMFQRKGQIIIERKDGLDEDEVMMAALDAGAEDFNAEEE-AFEITTAM 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRP--YTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
F +++ SLE G++ S+ + M P YT + +D E K+QKL+++L+ DV+ VY
Sbjct: 178 EDFSQVRESLEEAGYEFASAELTMIPDTYTQLNLEDSE--KVQKLIDKLEDDDDVQDVYH 235
Query: 237 NA 238
NA
Sbjct: 236 NA 237
>gi|15639465|ref|NP_218915.1| hypothetical protein TP0474 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025705|ref|YP_001933477.1| hypothetical protein TPASS_0474 [Treponema pallidum subsp. pallidum
SS14]
gi|338706436|ref|YP_004673204.1| hypothetical protein TPCCA_0474 [Treponema paraluiscuniculi
Cuniculi A]
gi|378972981|ref|YP_005221585.1| hypothetical protein TPESAMD_0474 [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378974048|ref|YP_005222654.1| hypothetical protein TPEGAU_0474 [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378975109|ref|YP_005223717.1| hypothetical protein TPADAL_0474 [Treponema pallidum subsp.
pallidum DAL-1]
gi|378981957|ref|YP_005230262.1| hypothetical protein TPECDC2_0474 [Treponema pallidum subsp.
pertenue str. CDC2]
gi|384421991|ref|YP_005631350.1| hypothetical protein TPChic_0474 [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502348|ref|YP_006869792.1| hypothetical protein TPAMA_0474 [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6226380|sp|O83487.1|Y474_TREPA RecName: Full=Probable transcriptional regulatory protein TP_0474
gi|226706230|sp|B2S369.1|Y474_TREPS RecName: Full=Probable transcriptional regulatory protein
TPASS_0474
gi|3322762|gb|AAC65461.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018280|gb|ACD70898.1| hypothetical protein TPASS_0474 [Treponema pallidum subsp. pallidum
SS14]
gi|291059857|gb|ADD72592.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Chicago]
gi|335344497|gb|AEH40413.1| conserved hypothetical protein [Treponema paraluiscuniculi Cuniculi
A]
gi|374677304|gb|AEZ57597.1| hypothetical protein TPESAMD_0474 [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374678374|gb|AEZ58666.1| hypothetical protein TPECDC2_0474 [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679443|gb|AEZ59734.1| hypothetical protein TPEGAU_0474 [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374680507|gb|AEZ60797.1| hypothetical protein TPADAL_0474 [Treponema pallidum subsp.
pallidum DAL-1]
gi|408475711|gb|AFU66476.1| hypothetical protein TPAMA_0474 [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 245
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 151/242 (62%), Gaps = 5/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ VA G +P N +LR AI KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + Y E+ YEGY+ G A++V+ +T+N+ R +N+RN+F+
Sbjct: 61 MPKDNIERAIKKGTGELSGSS--YEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+NGGNL GSV +MF G + + + L++LALE GAED + + +T+ T P
Sbjct: 119 RNGGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMELALEAGAED-IQNAGGVLTVTTVP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F + SL+ G+++ S+GI M P T + + A K+ K+++ L++ DV+ VY+NA
Sbjct: 178 GTFETVLESLQAKGWESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSNA 237
Query: 239 LI 240
I
Sbjct: 238 DI 239
>gi|317048522|ref|YP_004116170.1| hypothetical protein Pat9b_2312 [Pantoea sp. At-9b]
gi|316950139|gb|ADU69614.1| protein of unknown function DUF28 [Pantoea sp. At-9b]
Length = 247
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G+A++V+C+++NR RTV +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGSAVMVECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ L++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISYAPGQDEDALMEAALEAGAEDVVSYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+ + + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 QLGAVRDALEAAGLKADEAEVTMIPSTKAELDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|375009688|ref|YP_004983321.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448238872|ref|YP_007402930.1| DNA-binding regulatory protein [Geobacillus sp. GHH01]
gi|359288537|gb|AEV20221.1| hypothetical protein GTCCBUS3UF5_29180 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207714|gb|AGE23179.1| DNA-binding regulatory protein [Geobacillus sp. GHH01]
Length = 246
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA + G +P +N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K E+ NY E+RYEGY G A++V C+T+N+ RT +N+R F+
Sbjct: 61 MPSENIERAIKKATGT--QEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F+ G L+ N ++ LL LA+E GAE+ + D I T
Sbjct: 119 KNGGNLGETGCVSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEE-METTDESFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K+ LE GF S+ I M P T + + K+ KL++ L+ DV++VY
Sbjct: 178 APESFETVKDELEQQGFTFASAEITMIPQTYTTLEGDDLKKMLKLIDTLEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|319790085|ref|YP_004151718.1| hypothetical protein Theam_1111 [Thermovibrio ammonificans HB-1]
gi|317114587|gb|ADU97077.1| protein of unknown function DUF28 [Thermovibrio ammonificans HB-1]
Length = 247
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 150/240 (62%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T++ RE+ VA G +P+TN +LR AIE+A N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIYTKLAREITVAAREGGGDPETNPRLRAAIERARKFN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ I E Y EV YEGY G AIIV C+T+NR RT S +R+ F+
Sbjct: 61 MPKENIERAIKRGTGEIAGEA--YEEVTYEGYGPGGVAIIVKCLTDNRNRTASEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V +MF+ G ++ +P K + T++ A++ GA+D ++ +D+K I T
Sbjct: 119 KHGGNLGTSGCVSWMFERKG-VITVPADKFDEETVMLAAIDAGADD-VVREDDKFVIYTQ 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P++ ++ L G + E + + + P T + A K+ KLL L+ L DV++VY+N
Sbjct: 177 PTELEAVRKGLLDAGIEVEEAKLDLIPTTTTRVEGETAQKVLKLLMALEDLDDVQEVYSN 236
>gi|15802277|ref|NP_288301.1| hypothetical protein Z2916 [Escherichia coli O157:H7 str. EDL933]
gi|15831828|ref|NP_310601.1| hypothetical protein ECs2574 [Escherichia coli O157:H7 str. Sakai]
gi|26248130|ref|NP_754170.1| hypothetical protein c2278 [Escherichia coli CFT073]
gi|91211089|ref|YP_541075.1| hypothetical protein UTI89_C2068 [Escherichia coli UTI89]
gi|110641982|ref|YP_669712.1| hypothetical protein ECP_1808 [Escherichia coli 536]
gi|117624016|ref|YP_852929.1| hypothetical protein APECO1_914 [Escherichia coli APEC O1]
gi|157156937|ref|YP_001463167.1| hypothetical protein EcE24377A_2094 [Escherichia coli E24377A]
gi|157161333|ref|YP_001458651.1| hypothetical protein EcHS_A1957 [Escherichia coli HS]
gi|168747891|ref|ZP_02772913.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|168757898|ref|ZP_02782905.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|168762342|ref|ZP_02787349.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|168770847|ref|ZP_02795854.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|168776589|ref|ZP_02801596.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|168783164|ref|ZP_02808171.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|168789729|ref|ZP_02814736.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|168801900|ref|ZP_02826907.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|170683235|ref|YP_001743380.1| hypothetical protein EcSMS35_1322 [Escherichia coli SMS-3-5]
gi|188492343|ref|ZP_02999613.1| conserved hypothetical protein TIGR01033 [Escherichia coli 53638]
gi|191172997|ref|ZP_03034531.1| conserved hypothetical protein [Escherichia coli F11]
gi|195940290|ref|ZP_03085672.1| hypothetical protein EscherichcoliO157_28499 [Escherichia coli
O157:H7 str. EC4024]
gi|208810508|ref|ZP_03252384.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4206]
gi|208816910|ref|ZP_03258030.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4045]
gi|208820490|ref|ZP_03260810.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4042]
gi|209400343|ref|YP_002270947.1| hypothetical protein ECH74115_2600 [Escherichia coli O157:H7 str.
EC4115]
gi|215487077|ref|YP_002329508.1| hypothetical protein E2348C_1989 [Escherichia coli O127:H6 str.
E2348/69]
gi|217328746|ref|ZP_03444827.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. TW14588]
gi|218548575|ref|YP_002382366.1| hypothetical protein EFER_1208 [Escherichia fergusonii ATCC 35469]
gi|218554452|ref|YP_002387365.1| hypothetical protein ECIAI1_1951 [Escherichia coli IAI1]
gi|218558729|ref|YP_002391642.1| hypothetical protein ECS88_1922 [Escherichia coli S88]
gi|218689802|ref|YP_002398014.1| hypothetical protein ECED1_2069 [Escherichia coli ED1a]
gi|218695430|ref|YP_002403097.1| hypothetical protein EC55989_2043 [Escherichia coli 55989]
gi|218699564|ref|YP_002407193.1| hypothetical protein ECIAI39_1185 [Escherichia coli IAI39]
gi|218705365|ref|YP_002412884.1| hypothetical protein ECUMN_2162 [Escherichia coli UMN026]
gi|222156608|ref|YP_002556747.1| hypothetical protein LF82_2923 [Escherichia coli LF82]
gi|227885708|ref|ZP_04003513.1| conserved hypothetical protein [Escherichia coli 83972]
gi|237705818|ref|ZP_04536299.1| yebC [Escherichia sp. 3_2_53FAA]
gi|251785312|ref|YP_002999616.1| hypothetical protein B21_01823 [Escherichia coli BL21(DE3)]
gi|253773179|ref|YP_003036010.1| hypothetical protein ECBD_1774 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161924|ref|YP_003045032.1| hypothetical protein ECB_01835 [Escherichia coli B str. REL606]
gi|254288712|ref|YP_003054460.1| hypothetical protein ECD_01835 [Escherichia coli BL21(DE3)]
gi|254793488|ref|YP_003078325.1| hypothetical protein ECSP_2438 [Escherichia coli O157:H7 str.
TW14359]
gi|260855804|ref|YP_003229695.1| hypothetical protein ECO26_2716 [Escherichia coli O26:H11 str.
11368]
gi|260868399|ref|YP_003234801.1| hypothetical protein ECO111_2386 [Escherichia coli O111:H- str.
11128]
gi|261227635|ref|ZP_05941916.1| hypothetical protein EscherichiacoliO157_23996 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258199|ref|ZP_05950732.1| hypothetical protein EscherichiacoliO157EcO_20602 [Escherichia coli
O157:H7 str. FRIK966]
gi|291283046|ref|YP_003499864.1| hypothetical protein G2583_2316 [Escherichia coli O55:H7 str.
CB9615]
gi|293405359|ref|ZP_06649351.1| UPF0082 protein yebC [Escherichia coli FVEC1412]
gi|293410176|ref|ZP_06653752.1| hypothetical protein ECEG_01132 [Escherichia coli B354]
gi|293415179|ref|ZP_06657822.1| hypothetical protein ECDG_01735 [Escherichia coli B185]
gi|298381001|ref|ZP_06990600.1| yebC protein [Escherichia coli FVEC1302]
gi|300824194|ref|ZP_07104312.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
119-7]
gi|300899114|ref|ZP_07117397.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
198-1]
gi|300924953|ref|ZP_07140880.1| hypothetical protein HMPREF9548_03065 [Escherichia coli MS 182-1]
gi|300928895|ref|ZP_07144400.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
187-1]
gi|300935839|ref|ZP_07150797.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 21-1]
gi|300982168|ref|ZP_07175903.1| hypothetical protein HMPREF9553_02062 [Escherichia coli MS 200-1]
gi|300994107|ref|ZP_07180690.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 45-1]
gi|301018300|ref|ZP_07182809.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 69-1]
gi|301050782|ref|ZP_07197639.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
185-1]
gi|301327653|ref|ZP_07220861.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 78-1]
gi|306814306|ref|ZP_07448472.1| hypothetical protein ECNC101_19736 [Escherichia coli NC101]
gi|307314224|ref|ZP_07593834.1| protein of unknown function DUF28 [Escherichia coli W]
gi|312967067|ref|ZP_07781285.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331657913|ref|ZP_08358875.1| protein YebC [Escherichia coli TA206]
gi|331668559|ref|ZP_08369407.1| protein YebC [Escherichia coli TA271]
gi|331673394|ref|ZP_08374162.1| protein YebC [Escherichia coli TA280]
gi|331677745|ref|ZP_08378420.1| protein YebC [Escherichia coli H591]
gi|331683370|ref|ZP_08383971.1| protein YebC [Escherichia coli H299]
gi|366157443|ref|ZP_09457305.1| hypothetical protein ETW09_00745 [Escherichia sp. TW09308]
gi|378712692|ref|YP_005277585.1| hypothetical protein [Escherichia coli KO11FL]
gi|386599662|ref|YP_006101168.1| YebC/PmpR family DNA-binding regulatory protein [Escherichia coli
IHE3034]
gi|386604169|ref|YP_006110469.1| hypothetical protein UM146_07830 [Escherichia coli UM146]
gi|386609253|ref|YP_006124739.1| hypothetical protein ECW_m2040 [Escherichia coli W]
gi|386619450|ref|YP_006139030.1| hypothetical protein ECNA114_1928 [Escherichia coli NA114]
gi|386624493|ref|YP_006144221.1| hypothetical protein CE10_2150 [Escherichia coli O7:K1 str. CE10]
gi|386629566|ref|YP_006149286.1| hypothetical protein i02_2094 [Escherichia coli str. 'clone D i2']
gi|386634486|ref|YP_006154205.1| hypothetical protein i14_2094 [Escherichia coli str. 'clone D i14']
gi|386639391|ref|YP_006106189.1| hypothetical protein ECABU_c21260 [Escherichia coli ABU 83972]
gi|386701164|ref|YP_006165001.1| hypothetical protein KO11_13375 [Escherichia coli KO11FL]
gi|386709726|ref|YP_006173447.1| hypothetical protein WFL_10010 [Escherichia coli W]
gi|387507113|ref|YP_006159369.1| hypothetical protein ECO55CA74_11150 [Escherichia coli O55:H7 str.
RM12579]
gi|387607484|ref|YP_006096340.1| hypothetical protein EC042_2031 [Escherichia coli 042]
gi|387612352|ref|YP_006115468.1| hypothetical protein ETEC_1897 [Escherichia coli ETEC H10407]
gi|387617203|ref|YP_006120225.1| hypothetical protein NRG857_09345 [Escherichia coli O83:H1 str. NRG
857C]
gi|387829777|ref|YP_003349714.1| hypothetical protein ECSF_1724 [Escherichia coli SE15]
gi|387882972|ref|YP_006313274.1| hypothetical protein CDCO157_2409 [Escherichia coli Xuzhou21]
gi|404375227|ref|ZP_10980415.1| UPF0082 protein yebC [Escherichia sp. 1_1_43]
gi|407469668|ref|YP_006783889.1| hypothetical protein O3O_15015 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407481668|ref|YP_006778817.1| hypothetical protein O3K_10610 [Escherichia coli O104:H4 str.
2011C-3493]
gi|410482218|ref|YP_006769764.1| hypothetical protein O3M_10585 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415792287|ref|ZP_11495812.1| hypothetical protein ECEPECA14_5459 [Escherichia coli EPECa14]
gi|415818037|ref|ZP_11507953.1| hypothetical protein ECOK1180_0650 [Escherichia coli OK1180]
gi|415826112|ref|ZP_11513387.1| hypothetical protein ECOK1357_0309 [Escherichia coli OK1357]
gi|415842459|ref|ZP_11523133.1| hypothetical protein ECRN5871_4929 [Escherichia coli RN587/1]
gi|416312377|ref|ZP_11657578.1| protein of unknown function DUF28 [Escherichia coli O157:H7 str.
1044]
gi|416323092|ref|ZP_11664701.1| hypothetical protein ECoD_05063 [Escherichia coli O157:H7 str.
EC1212]
gi|416327347|ref|ZP_11667354.1| hypothetical protein ECF_02227 [Escherichia coli O157:H7 str. 1125]
gi|416337528|ref|ZP_11673891.1| hypothetical protein EcoM_03340 [Escherichia coli WV_060327]
gi|416346900|ref|ZP_11679991.1| hypothetical protein ECoL_05064 [Escherichia coli EC4100B]
gi|416773952|ref|ZP_11873946.1| hypothetical protein ECO5101_14689 [Escherichia coli O157:H7 str.
G5101]
gi|416785955|ref|ZP_11878851.1| hypothetical protein ECO9389_19185 [Escherichia coli O157:H- str.
493-89]
gi|416796934|ref|ZP_11883768.1| hypothetical protein ECO2687_06392 [Escherichia coli O157:H- str. H
2687]
gi|416808378|ref|ZP_11888423.1| hypothetical protein ECO7815_20070 [Escherichia coli O55:H7 str.
3256-97]
gi|416827632|ref|ZP_11897648.1| hypothetical protein ECO5905_21790 [Escherichia coli O55:H7 str.
USDA 5905]
gi|416829012|ref|ZP_11898306.1| hypothetical protein ECOSU61_18914 [Escherichia coli O157:H7 str.
LSU-61]
gi|416897791|ref|ZP_11927439.1| hypothetical protein ECSTEC7V_2238 [Escherichia coli STEC_7v]
gi|417084808|ref|ZP_11952447.1| hypothetical protein i01_02456 [Escherichia coli cloneA_i1]
gi|417114814|ref|ZP_11965950.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2741]
gi|417134785|ref|ZP_11979570.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0588]
gi|417138133|ref|ZP_11981866.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0259]
gi|417154810|ref|ZP_11992939.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.0497]
gi|417195346|ref|ZP_12015760.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0522]
gi|417206986|ref|ZP_12019621.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
JB1-95]
gi|417221828|ref|ZP_12025268.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.154]
gi|417247755|ref|ZP_12040511.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
9.0111]
gi|417265982|ref|ZP_12053351.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.3884]
gi|417283908|ref|ZP_12071205.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3003]
gi|417287338|ref|ZP_12074625.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
TW07793]
gi|417298098|ref|ZP_12085340.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
900105 (10e)]
gi|417308336|ref|ZP_12095189.1| hypothetical protein PPECC33_17610 [Escherichia coli PCN033]
gi|417581342|ref|ZP_12232147.1| hypothetical protein ECSTECB2F1_1998 [Escherichia coli STEC_B2F1]
gi|417586745|ref|ZP_12237517.1| hypothetical protein ECSTECC16502_2372 [Escherichia coli
STEC_C165-02]
gi|417592017|ref|ZP_12242716.1| hypothetical protein EC253486_2615 [Escherichia coli 2534-86]
gi|417596996|ref|ZP_12247644.1| hypothetical protein EC30301_2132 [Escherichia coli 3030-1]
gi|417602461|ref|ZP_12253031.1| hypothetical protein ECSTEC94C_2250 [Escherichia coli STEC_94C]
gi|417662456|ref|ZP_12312037.1| hypothetical protein ECAA86_02033 [Escherichia coli AA86]
gi|417667253|ref|ZP_12316801.1| hypothetical protein ECSTECO31_2057 [Escherichia coli STEC_O31]
gi|417755911|ref|ZP_12403995.1| hypothetical protein ECDEC2B_2228 [Escherichia coli DEC2B]
gi|417805385|ref|ZP_12452341.1| hypothetical protein HUSEC_10504 [Escherichia coli O104:H4 str.
LB226692]
gi|417833106|ref|ZP_12479554.1| hypothetical protein HUSEC41_10092 [Escherichia coli O104:H4 str.
01-09591]
gi|417865256|ref|ZP_12510300.1| hypothetical protein C22711_2188 [Escherichia coli O104:H4 str.
C227-11]
gi|418945655|ref|ZP_13498423.1| hypothetical protein T22_20634 [Escherichia coli O157:H43 str. T22]
gi|418997100|ref|ZP_13544700.1| hypothetical protein ECDEC1A_2016 [Escherichia coli DEC1A]
gi|419002325|ref|ZP_13549861.1| hypothetical protein ECDEC1B_2222 [Escherichia coli DEC1B]
gi|419007919|ref|ZP_13555359.1| hypothetical protein ECDEC1C_2225 [Escherichia coli DEC1C]
gi|419013700|ref|ZP_13561055.1| hypothetical protein ECDEC1D_2548 [Escherichia coli DEC1D]
gi|419018530|ref|ZP_13565841.1| hypothetical protein ECDEC1E_2229 [Escherichia coli DEC1E]
gi|419024172|ref|ZP_13571403.1| hypothetical protein ECDEC2A_2300 [Escherichia coli DEC2A]
gi|419029218|ref|ZP_13576390.1| hypothetical protein ECDEC2C_2256 [Escherichia coli DEC2C]
gi|419034822|ref|ZP_13581913.1| hypothetical protein ECDEC2D_2063 [Escherichia coli DEC2D]
gi|419039817|ref|ZP_13586858.1| hypothetical protein ECDEC2E_2129 [Escherichia coli DEC2E]
gi|419045506|ref|ZP_13592452.1| hypothetical protein ECDEC3A_2467 [Escherichia coli DEC3A]
gi|419051402|ref|ZP_13598283.1| hypothetical protein ECDEC3B_2692 [Escherichia coli DEC3B]
gi|419057403|ref|ZP_13604218.1| hypothetical protein ECDEC3C_2980 [Escherichia coli DEC3C]
gi|419062783|ref|ZP_13609522.1| hypothetical protein ECDEC3D_2569 [Escherichia coli DEC3D]
gi|419069684|ref|ZP_13615320.1| hypothetical protein ECDEC3E_2757 [Escherichia coli DEC3E]
gi|419075674|ref|ZP_13621205.1| hypothetical protein ECDEC3F_2762 [Escherichia coli DEC3F]
gi|419080919|ref|ZP_13626376.1| hypothetical protein ECDEC4A_2514 [Escherichia coli DEC4A]
gi|419086553|ref|ZP_13631923.1| hypothetical protein ECDEC4B_2472 [Escherichia coli DEC4B]
gi|419092478|ref|ZP_13637771.1| hypothetical protein ECDEC4C_2558 [Escherichia coli DEC4C]
gi|419098368|ref|ZP_13643581.1| hypothetical protein ECDEC4D_2473 [Escherichia coli DEC4D]
gi|419104177|ref|ZP_13649318.1| hypothetical protein ECDEC4E_2486 [Escherichia coli DEC4E]
gi|419109729|ref|ZP_13654796.1| hypothetical protein ECDEC4F_2542 [Escherichia coli DEC4F]
gi|419115071|ref|ZP_13660092.1| hypothetical protein ECDEC5A_2237 [Escherichia coli DEC5A]
gi|419120683|ref|ZP_13665649.1| hypothetical protein ECDEC5B_2497 [Escherichia coli DEC5B]
gi|419126146|ref|ZP_13671035.1| hypothetical protein ECDEC5C_2311 [Escherichia coli DEC5C]
gi|419131801|ref|ZP_13676642.1| hypothetical protein ECDEC5D_2551 [Escherichia coli DEC5D]
gi|419136685|ref|ZP_13681484.1| hypothetical protein ECDEC5E_2177 [Escherichia coli DEC5E]
gi|419159367|ref|ZP_13703876.1| hypothetical protein ECDEC6D_2172 [Escherichia coli DEC6D]
gi|419164587|ref|ZP_13709044.1| hypothetical protein ECDEC6E_2303 [Escherichia coli DEC6E]
gi|419197265|ref|ZP_13740658.1| hypothetical protein ECDEC8A_2366 [Escherichia coli DEC8A]
gi|419203720|ref|ZP_13746915.1| hypothetical protein ECDEC8B_2600 [Escherichia coli DEC8B]
gi|419209782|ref|ZP_13752869.1| hypothetical protein ECDEC8C_2987 [Escherichia coli DEC8C]
gi|419215852|ref|ZP_13758854.1| hypothetical protein ECDEC8D_2609 [Escherichia coli DEC8D]
gi|419221660|ref|ZP_13764590.1| hypothetical protein ECDEC8E_2457 [Escherichia coli DEC8E]
gi|419226961|ref|ZP_13769826.1| hypothetical protein ECDEC9A_2368 [Escherichia coli DEC9A]
gi|419232489|ref|ZP_13775270.1| hypothetical protein ECDEC9B_2066 [Escherichia coli DEC9B]
gi|419238079|ref|ZP_13780804.1| hypothetical protein ECDEC9C_2294 [Escherichia coli DEC9C]
gi|419243518|ref|ZP_13786159.1| hypothetical protein ECDEC9D_2091 [Escherichia coli DEC9D]
gi|419249340|ref|ZP_13791929.1| hypothetical protein ECDEC9E_2564 [Escherichia coli DEC9E]
gi|419255138|ref|ZP_13797660.1| hypothetical protein ECDEC10A_2649 [Escherichia coli DEC10A]
gi|419261356|ref|ZP_13803781.1| hypothetical protein ECDEC10B_2935 [Escherichia coli DEC10B]
gi|419267479|ref|ZP_13809836.1| hypothetical protein ECDEC10C_2980 [Escherichia coli DEC10C]
gi|419272850|ref|ZP_13815151.1| hypothetical protein ECDEC10D_2601 [Escherichia coli DEC10D]
gi|419278240|ref|ZP_13820494.1| hypothetical protein ECDEC10E_2188 [Escherichia coli DEC10E]
gi|419284293|ref|ZP_13826476.1| hypothetical protein ECDEC10F_2952 [Escherichia coli DEC10F]
gi|419345495|ref|ZP_13886873.1| hypothetical protein ECDEC13A_2052 [Escherichia coli DEC13A]
gi|419349916|ref|ZP_13891260.1| hypothetical protein ECDEC13B_1855 [Escherichia coli DEC13B]
gi|419355312|ref|ZP_13896574.1| hypothetical protein ECDEC13C_2340 [Escherichia coli DEC13C]
gi|419360338|ref|ZP_13901559.1| hypothetical protein ECDEC13D_2110 [Escherichia coli DEC13D]
gi|419365444|ref|ZP_13906609.1| hypothetical protein ECDEC13E_2149 [Escherichia coli DEC13E]
gi|419370288|ref|ZP_13911409.1| hypothetical protein ECDEC14A_2030 [Escherichia coli DEC14A]
gi|419375738|ref|ZP_13916767.1| hypothetical protein ECDEC14B_2311 [Escherichia coli DEC14B]
gi|419381054|ref|ZP_13922010.1| hypothetical protein ECDEC14C_2206 [Escherichia coli DEC14C]
gi|419386329|ref|ZP_13927210.1| hypothetical protein ECDEC14D_2133 [Escherichia coli DEC14D]
gi|419391796|ref|ZP_13932611.1| hypothetical protein ECDEC15A_2395 [Escherichia coli DEC15A]
gi|419396868|ref|ZP_13937638.1| hypothetical protein ECDEC15B_2161 [Escherichia coli DEC15B]
gi|419402202|ref|ZP_13942927.1| hypothetical protein ECDEC15C_2114 [Escherichia coli DEC15C]
gi|419407344|ref|ZP_13948035.1| hypothetical protein ECDEC15D_2046 [Escherichia coli DEC15D]
gi|419412884|ref|ZP_13953539.1| hypothetical protein ECDEC15E_2387 [Escherichia coli DEC15E]
gi|419700659|ref|ZP_14228265.1| hypothetical protein OQA_08891 [Escherichia coli SCI-07]
gi|419806026|ref|ZP_14331146.1| hypothetical protein ECAI27_27830 [Escherichia coli AI27]
gi|419878119|ref|ZP_14399596.1| hypothetical protein ECO9534_04133 [Escherichia coli O111:H11 str.
CVM9534]
gi|419880416|ref|ZP_14401810.1| hypothetical protein ECO9545_17796 [Escherichia coli O111:H11 str.
CVM9545]
gi|419887878|ref|ZP_14408430.1| hypothetical protein ECO9570_00789 [Escherichia coli O111:H8 str.
CVM9570]
gi|419897213|ref|ZP_14416806.1| hypothetical protein ECO9574_14381 [Escherichia coli O111:H8 str.
CVM9574]
gi|419901587|ref|ZP_14420913.1| hypothetical protein ECO9942_13401 [Escherichia coli O26:H11 str.
CVM9942]
gi|419905429|ref|ZP_14424396.1| hypothetical protein ECO10026_11534 [Escherichia coli O26:H11 str.
CVM10026]
gi|419916403|ref|ZP_14434712.1| hypothetical protein ECKD2_00871 [Escherichia coli KD2]
gi|419932434|ref|ZP_14449744.1| hypothetical protein EC5761_02699 [Escherichia coli 576-1]
gi|419946697|ref|ZP_14463086.1| hypothetical protein ECHM605_21513 [Escherichia coli HM605]
gi|419950152|ref|ZP_14466372.1| hypothetical protein ECMT8_12321 [Escherichia coli CUMT8]
gi|420091476|ref|ZP_14603223.1| hypothetical protein ECO9602_08029 [Escherichia coli O111:H8 str.
CVM9602]
gi|420093740|ref|ZP_14605375.1| hypothetical protein ECO9634_01889 [Escherichia coli O111:H8 str.
CVM9634]
gi|420107896|ref|ZP_14618206.1| hypothetical protein ECO9553_05125 [Escherichia coli O111:H11 str.
CVM9553]
gi|420114030|ref|ZP_14623718.1| hypothetical protein ECO10021_23826 [Escherichia coli O26:H11 str.
CVM10021]
gi|420123691|ref|ZP_14632572.1| hypothetical protein ECO10030_13154 [Escherichia coli O26:H11 str.
CVM10030]
gi|420127872|ref|ZP_14636452.1| hypothetical protein ECO10224_20870 [Escherichia coli O26:H11 str.
CVM10224]
gi|420133840|ref|ZP_14642010.1| hypothetical protein ECO9952_10429 [Escherichia coli O26:H11 str.
CVM9952]
gi|420269774|ref|ZP_14772146.1| hypothetical protein ECPA22_2714 [Escherichia coli PA22]
gi|420275629|ref|ZP_14777930.1| hypothetical protein ECPA40_2870 [Escherichia coli PA40]
gi|420280898|ref|ZP_14783145.1| hypothetical protein ECTW06591_2331 [Escherichia coli TW06591]
gi|420286783|ref|ZP_14788980.1| hypothetical protein ECTW10246_2906 [Escherichia coli TW10246]
gi|420292611|ref|ZP_14794743.1| hypothetical protein ECTW11039_2735 [Escherichia coli TW11039]
gi|420298397|ref|ZP_14800460.1| hypothetical protein ECTW09109_2861 [Escherichia coli TW09109]
gi|420304034|ref|ZP_14806041.1| hypothetical protein ECTW10119_2965 [Escherichia coli TW10119]
gi|420309667|ref|ZP_14811611.1| hypothetical protein ECEC1738_2719 [Escherichia coli EC1738]
gi|420315113|ref|ZP_14816996.1| hypothetical protein ECEC1734_2591 [Escherichia coli EC1734]
gi|421812546|ref|ZP_16248293.1| hypothetical protein EC80416_2327 [Escherichia coli 8.0416]
gi|421818580|ref|ZP_16254092.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
10.0821]
gi|421824201|ref|ZP_16259595.1| hypothetical protein ECFRIK920_2616 [Escherichia coli FRIK920]
gi|421831088|ref|ZP_16266386.1| hypothetical protein ECPA7_3231 [Escherichia coli PA7]
gi|422335206|ref|ZP_16416207.1| UPF0082 protein yebC [Escherichia coli 4_1_47FAA]
gi|422359615|ref|ZP_16440252.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
110-3]
gi|422366978|ref|ZP_16447435.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
153-1]
gi|422371680|ref|ZP_16452055.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 16-3]
gi|422375819|ref|ZP_16456081.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 60-1]
gi|422381555|ref|ZP_16461719.1| hypothetical protein HMPREF9532_03086 [Escherichia coli MS 57-2]
gi|422749090|ref|ZP_16803002.1| yebC [Escherichia coli H252]
gi|422755201|ref|ZP_16809026.1| yebC [Escherichia coli H263]
gi|422761110|ref|ZP_16814869.1| yebC [Escherichia coli E1167]
gi|422766430|ref|ZP_16820157.1| yebC [Escherichia coli E1520]
gi|422781233|ref|ZP_16834018.1| yebC [Escherichia coli TW10509]
gi|422786454|ref|ZP_16839193.1| yebC [Escherichia coli H489]
gi|422799154|ref|ZP_16847653.1| yebC [Escherichia coli M863]
gi|422805875|ref|ZP_16854307.1| yebC [Escherichia fergusonii B253]
gi|422829268|ref|ZP_16877435.1| hypothetical protein ESNG_01940 [Escherichia coli B093]
gi|422835825|ref|ZP_16883877.1| hypothetical protein ESOG_03478 [Escherichia coli E101]
gi|422838218|ref|ZP_16886191.1| hypothetical protein ESPG_00877 [Escherichia coli H397]
gi|422956758|ref|ZP_16969232.1| UPF0082 protein yebC [Escherichia coli H494]
gi|422973351|ref|ZP_16975735.1| UPF0082 protein yebC [Escherichia coli TA124]
gi|422987918|ref|ZP_16978694.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. C227-11]
gi|422994799|ref|ZP_16985563.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. C236-11]
gi|422999939|ref|ZP_16990693.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 09-7901]
gi|423003550|ref|ZP_16994296.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 04-8351]
gi|423010115|ref|ZP_17000853.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-3677]
gi|423019342|ref|ZP_17010051.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4404]
gi|423024508|ref|ZP_17015205.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4522]
gi|423030325|ref|ZP_17021013.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4623]
gi|423038157|ref|ZP_17028831.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043277|ref|ZP_17033944.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423045019|ref|ZP_17035680.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423053552|ref|ZP_17042360.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060516|ref|ZP_17049312.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423705851|ref|ZP_17680234.1| UPF0082 protein yebC [Escherichia coli B799]
gi|423711550|ref|ZP_17685859.1| hypothetical protein ECPA31_2549 [Escherichia coli PA31]
gi|424077705|ref|ZP_17814759.1| hypothetical protein ECFDA505_2680 [Escherichia coli FDA505]
gi|424084081|ref|ZP_17820642.1| hypothetical protein ECFDA517_2937 [Escherichia coli FDA517]
gi|424090501|ref|ZP_17826529.1| hypothetical protein ECFRIK1996_2720 [Escherichia coli FRIK1996]
gi|424097026|ref|ZP_17832446.1| hypothetical protein ECFRIK1985_2830 [Escherichia coli FRIK1985]
gi|424103365|ref|ZP_17838241.1| hypothetical protein ECFRIK1990_2834 [Escherichia coli FRIK1990]
gi|424110088|ref|ZP_17844407.1| hypothetical protein EC93001_2833 [Escherichia coli 93-001]
gi|424115794|ref|ZP_17849725.1| hypothetical protein ECPA3_2611 [Escherichia coli PA3]
gi|424122163|ref|ZP_17855576.1| hypothetical protein ECPA5_2671 [Escherichia coli PA5]
gi|424128288|ref|ZP_17861264.1| hypothetical protein ECPA9_2789 [Escherichia coli PA9]
gi|424134479|ref|ZP_17867025.1| hypothetical protein ECPA10_2821 [Escherichia coli PA10]
gi|424141118|ref|ZP_17873096.1| hypothetical protein ECPA14_2778 [Escherichia coli PA14]
gi|424147545|ref|ZP_17879006.1| hypothetical protein ECPA15_2905 [Escherichia coli PA15]
gi|424153478|ref|ZP_17884493.1| hypothetical protein ECPA24_2585 [Escherichia coli PA24]
gi|424235971|ref|ZP_17889944.1| hypothetical protein ECPA25_2448 [Escherichia coli PA25]
gi|424313558|ref|ZP_17895851.1| hypothetical protein ECPA28_2792 [Escherichia coli PA28]
gi|424449901|ref|ZP_17901675.1| hypothetical protein ECPA32_2728 [Escherichia coli PA32]
gi|424456070|ref|ZP_17907298.1| hypothetical protein ECPA33_2722 [Escherichia coli PA33]
gi|424462377|ref|ZP_17912947.1| hypothetical protein ECPA39_2709 [Escherichia coli PA39]
gi|424468775|ref|ZP_17918689.1| hypothetical protein ECPA41_2729 [Escherichia coli PA41]
gi|424475360|ref|ZP_17924769.1| hypothetical protein ECPA42_2875 [Escherichia coli PA42]
gi|424481101|ref|ZP_17930143.1| hypothetical protein ECTW07945_2666 [Escherichia coli TW07945]
gi|424487280|ref|ZP_17935907.1| hypothetical protein ECTW09098_2750 [Escherichia coli TW09098]
gi|424493689|ref|ZP_17941593.1| hypothetical protein ECTW09195_2774 [Escherichia coli TW09195]
gi|424500544|ref|ZP_17947544.1| hypothetical protein ECEC4203_2687 [Escherichia coli EC4203]
gi|424506699|ref|ZP_17953212.1| hypothetical protein ECEC4196_2655 [Escherichia coli EC4196]
gi|424514186|ref|ZP_17958964.1| hypothetical protein ECTW14313_2628 [Escherichia coli TW14313]
gi|424520477|ref|ZP_17964671.1| hypothetical protein ECTW14301_2575 [Escherichia coli TW14301]
gi|424526385|ref|ZP_17970169.1| hypothetical protein ECEC4421_2661 [Escherichia coli EC4421]
gi|424532550|ref|ZP_17975955.1| hypothetical protein ECEC4422_2794 [Escherichia coli EC4422]
gi|424538552|ref|ZP_17981569.1| hypothetical protein ECEC4013_2890 [Escherichia coli EC4013]
gi|424544519|ref|ZP_17987043.1| hypothetical protein ECEC4402_2674 [Escherichia coli EC4402]
gi|424550784|ref|ZP_17992731.1| hypothetical protein ECEC4439_2626 [Escherichia coli EC4439]
gi|424557030|ref|ZP_17998507.1| hypothetical protein ECEC4436_2608 [Escherichia coli EC4436]
gi|424563378|ref|ZP_18004436.1| hypothetical protein ECEC4437_2763 [Escherichia coli EC4437]
gi|424569451|ref|ZP_18010102.1| hypothetical protein ECEC4448_2654 [Escherichia coli EC4448]
gi|424575577|ref|ZP_18015750.1| hypothetical protein ECEC1845_2602 [Escherichia coli EC1845]
gi|424581436|ref|ZP_18021158.1| hypothetical protein ECEC1863_2336 [Escherichia coli EC1863]
gi|424753409|ref|ZP_18181366.1| hypothetical protein CFSAN001629_23766 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424760791|ref|ZP_18188396.1| hypothetical protein CFSAN001630_14427 [Escherichia coli O111:H11
str. CFSAN001630]
gi|424770392|ref|ZP_18197597.1| hypothetical protein CFSAN001632_09937 [Escherichia coli O111:H8
str. CFSAN001632]
gi|424815973|ref|ZP_18241124.1| hypothetical protein ECD227_1090 [Escherichia fergusonii ECD227]
gi|425098283|ref|ZP_18501077.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
3.4870]
gi|425104463|ref|ZP_18506828.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
5.2239]
gi|425110293|ref|ZP_18512290.1| hypothetical protein EC60172_2880 [Escherichia coli 6.0172]
gi|425126082|ref|ZP_18527346.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
8.0586]
gi|425131938|ref|ZP_18532841.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
8.2524]
gi|425138306|ref|ZP_18538775.1| hypothetical protein EC100833_2799 [Escherichia coli 10.0833]
gi|425144265|ref|ZP_18544326.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
10.0869]
gi|425150332|ref|ZP_18550013.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
88.0221]
gi|425156178|ref|ZP_18555505.1| hypothetical protein ECPA34_2772 [Escherichia coli PA34]
gi|425162690|ref|ZP_18561629.1| hypothetical protein ECFDA506_3131 [Escherichia coli FDA506]
gi|425168363|ref|ZP_18566909.1| hypothetical protein ECFDA507_2808 [Escherichia coli FDA507]
gi|425174452|ref|ZP_18572623.1| hypothetical protein ECFDA504_2761 [Escherichia coli FDA504]
gi|425180393|ref|ZP_18578173.1| hypothetical protein ECFRIK1999_2867 [Escherichia coli FRIK1999]
gi|425186630|ref|ZP_18583989.1| hypothetical protein ECFRIK1997_2899 [Escherichia coli FRIK1997]
gi|425193499|ref|ZP_18590348.1| hypothetical protein ECNE1487_3132 [Escherichia coli NE1487]
gi|425199889|ref|ZP_18596207.1| hypothetical protein ECNE037_3066 [Escherichia coli NE037]
gi|425206337|ref|ZP_18602217.1| hypothetical protein ECFRIK2001_3132 [Escherichia coli FRIK2001]
gi|425212073|ref|ZP_18607559.1| hypothetical protein ECPA4_2854 [Escherichia coli PA4]
gi|425218202|ref|ZP_18613248.1| hypothetical protein ECPA23_2732 [Escherichia coli PA23]
gi|425224718|ref|ZP_18619281.1| hypothetical protein ECPA49_2838 [Escherichia coli PA49]
gi|425230952|ref|ZP_18625080.1| hypothetical protein ECPA45_2858 [Escherichia coli PA45]
gi|425237102|ref|ZP_18630861.1| hypothetical protein ECTT12B_2742 [Escherichia coli TT12B]
gi|425243165|ref|ZP_18636545.1| hypothetical protein ECMA6_2904 [Escherichia coli MA6]
gi|425249323|ref|ZP_18642319.1| hypothetical protein EC5905_2968 [Escherichia coli 5905]
gi|425255101|ref|ZP_18647693.1| hypothetical protein ECCB7326_2726 [Escherichia coli CB7326]
gi|425261388|ref|ZP_18653475.1| hypothetical protein ECEC96038_2650 [Escherichia coli EC96038]
gi|425267427|ref|ZP_18659111.1| hypothetical protein EC5412_2706 [Escherichia coli 5412]
gi|425278112|ref|ZP_18669376.1| hypothetical protein ECARS42123_2224 [Escherichia coli ARS4.2123]
gi|425294881|ref|ZP_18685165.1| hypothetical protein ECPA38_2628 [Escherichia coli PA38]
gi|425300633|ref|ZP_18690577.1| hypothetical protein EC07798_2490 [Escherichia coli 07798]
gi|425311568|ref|ZP_18700813.1| hypothetical protein ECEC1735_2722 [Escherichia coli EC1735]
gi|425317495|ref|ZP_18706348.1| hypothetical protein ECEC1736_2612 [Escherichia coli EC1736]
gi|425323600|ref|ZP_18712033.1| hypothetical protein ECEC1737_2622 [Escherichia coli EC1737]
gi|425329763|ref|ZP_18717730.1| hypothetical protein ECEC1846_2586 [Escherichia coli EC1846]
gi|425335930|ref|ZP_18723420.1| hypothetical protein ECEC1847_2599 [Escherichia coli EC1847]
gi|425342355|ref|ZP_18729335.1| hypothetical protein ECEC1848_2786 [Escherichia coli EC1848]
gi|425348166|ref|ZP_18734738.1| hypothetical protein ECEC1849_2539 [Escherichia coli EC1849]
gi|425354467|ref|ZP_18740612.1| hypothetical protein ECEC1850_2773 [Escherichia coli EC1850]
gi|425360439|ref|ZP_18746172.1| hypothetical protein ECEC1856_2606 [Escherichia coli EC1856]
gi|425366565|ref|ZP_18751851.1| hypothetical protein ECEC1862_2598 [Escherichia coli EC1862]
gi|425372987|ref|ZP_18757722.1| hypothetical protein ECEC1864_2776 [Escherichia coli EC1864]
gi|425379641|ref|ZP_18763752.1| hypothetical protein ECEC1865_2712 [Escherichia coli EC1865]
gi|425385812|ref|ZP_18769460.1| hypothetical protein ECEC1866_2454 [Escherichia coli EC1866]
gi|425392500|ref|ZP_18775699.1| hypothetical protein ECEC1868_2787 [Escherichia coli EC1868]
gi|425398655|ref|ZP_18781444.1| hypothetical protein ECEC1869_2783 [Escherichia coli EC1869]
gi|425404687|ref|ZP_18787018.1| hypothetical protein ECEC1870_2528 [Escherichia coli EC1870]
gi|425411264|ref|ZP_18793107.1| hypothetical protein ECNE098_2886 [Escherichia coli NE098]
gi|425417572|ref|ZP_18798917.1| hypothetical protein ECFRIK523_2731 [Escherichia coli FRIK523]
gi|425428826|ref|ZP_18809520.1| hypothetical protein EC01304_2838 [Escherichia coli 0.1304]
gi|428947186|ref|ZP_19019573.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
88.1467]
gi|428953422|ref|ZP_19025271.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
88.1042]
gi|428959343|ref|ZP_19030723.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
89.0511]
gi|428965796|ref|ZP_19036653.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
90.0091]
gi|428971522|ref|ZP_19041941.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
90.0039]
gi|428978172|ref|ZP_19048061.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
90.2281]
gi|428983990|ref|ZP_19053445.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
93.0055]
gi|428990169|ref|ZP_19059216.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
93.0056]
gi|428995942|ref|ZP_19064623.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
94.0618]
gi|429002065|ref|ZP_19070304.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.0183]
gi|429008313|ref|ZP_19075915.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.1288]
gi|429014800|ref|ZP_19081769.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.0943]
gi|429020634|ref|ZP_19087209.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0428]
gi|429026715|ref|ZP_19092810.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0427]
gi|429032789|ref|ZP_19098395.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0939]
gi|429038934|ref|ZP_19104124.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0932]
gi|429044827|ref|ZP_19109594.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0107]
gi|429050417|ref|ZP_19115017.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.0003]
gi|429055656|ref|ZP_19120048.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.1742]
gi|429061300|ref|ZP_19125367.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.0007]
gi|429067390|ref|ZP_19130936.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0672]
gi|429073395|ref|ZP_19136686.1| hypothetical protein EC990678_2500 [Escherichia coli 99.0678]
gi|429078720|ref|ZP_19141884.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0713]
gi|429719374|ref|ZP_19254313.1| hypothetical protein MO3_02098 [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429724717|ref|ZP_19259584.1| hypothetical protein MO5_00703 [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429776422|ref|ZP_19308404.1| hypothetical protein C212_01023 [Escherichia coli O104:H4 str.
11-02030]
gi|429781197|ref|ZP_19313129.1| hypothetical protein C213_01019 [Escherichia coli O104:H4 str.
11-02033-1]
gi|429783456|ref|ZP_19315372.1| hypothetical protein C214_01020 [Escherichia coli O104:H4 str.
11-02092]
gi|429790828|ref|ZP_19322686.1| hypothetical protein C215_01020 [Escherichia coli O104:H4 str.
11-02093]
gi|429796560|ref|ZP_19328379.1| hypothetical protein C216_01020 [Escherichia coli O104:H4 str.
11-02281]
gi|429798253|ref|ZP_19330055.1| hypothetical protein C217_01020 [Escherichia coli O104:H4 str.
11-02318]
gi|429806766|ref|ZP_19338494.1| hypothetical protein C218_01020 [Escherichia coli O104:H4 str.
11-02913]
gi|429811114|ref|ZP_19342815.1| hypothetical protein C219_01019 [Escherichia coli O104:H4 str.
11-03439]
gi|429817186|ref|ZP_19348828.1| hypothetical protein C220_01020 [Escherichia coli O104:H4 str.
11-04080]
gi|429822397|ref|ZP_19353996.1| hypothetical protein C221_01019 [Escherichia coli O104:H4 str.
11-03943]
gi|429826640|ref|ZP_19357776.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0109]
gi|429832913|ref|ZP_19363393.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.0010]
gi|429912914|ref|ZP_19378870.1| hypothetical protein MO7_00686 [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429913786|ref|ZP_19379734.1| hypothetical protein O7C_00675 [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429918828|ref|ZP_19384761.1| hypothetical protein O7E_00692 [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429924635|ref|ZP_19390549.1| hypothetical protein O7G_01495 [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429928573|ref|ZP_19394475.1| hypothetical protein O7I_00369 [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429935125|ref|ZP_19401012.1| hypothetical protein O7K_01937 [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429940796|ref|ZP_19406670.1| hypothetical protein O7M_02499 [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429948429|ref|ZP_19414284.1| hypothetical protein O7O_05032 [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429951074|ref|ZP_19416922.1| hypothetical protein S7Y_02497 [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429954370|ref|ZP_19420206.1| hypothetical protein S91_00744 [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432353779|ref|ZP_19597053.1| hypothetical protein WCA_02752 [Escherichia coli KTE2]
gi|432358195|ref|ZP_19601424.1| hypothetical protein WCC_02145 [Escherichia coli KTE4]
gi|432362821|ref|ZP_19605992.1| hypothetical protein WCE_01841 [Escherichia coli KTE5]
gi|432372536|ref|ZP_19615581.1| hypothetical protein WCO_01560 [Escherichia coli KTE11]
gi|432377015|ref|ZP_19620012.1| hypothetical protein WCQ_01888 [Escherichia coli KTE12]
gi|432381529|ref|ZP_19624474.1| hypothetical protein WCU_01671 [Escherichia coli KTE15]
gi|432387345|ref|ZP_19630235.1| hypothetical protein WCY_02593 [Escherichia coli KTE16]
gi|432392273|ref|ZP_19635113.1| hypothetical protein WE9_02586 [Escherichia coli KTE21]
gi|432397657|ref|ZP_19640438.1| hypothetical protein WEI_02576 [Escherichia coli KTE25]
gi|432402132|ref|ZP_19644885.1| hypothetical protein WEK_02315 [Escherichia coli KTE26]
gi|432406873|ref|ZP_19649582.1| hypothetical protein WEO_02057 [Escherichia coli KTE28]
gi|432412078|ref|ZP_19654744.1| hypothetical protein WG9_02557 [Escherichia coli KTE39]
gi|432422126|ref|ZP_19664674.1| hypothetical protein A137_02543 [Escherichia coli KTE178]
gi|432426303|ref|ZP_19668808.1| hypothetical protein A139_01689 [Escherichia coli KTE181]
gi|432432073|ref|ZP_19674505.1| hypothetical protein A13K_02358 [Escherichia coli KTE187]
gi|432435969|ref|ZP_19678362.1| hypothetical protein A13M_01677 [Escherichia coli KTE188]
gi|432441275|ref|ZP_19683616.1| hypothetical protein A13O_02096 [Escherichia coli KTE189]
gi|432446395|ref|ZP_19688694.1| hypothetical protein A13S_02431 [Escherichia coli KTE191]
gi|432449879|ref|ZP_19692151.1| hypothetical protein A13W_00826 [Escherichia coli KTE193]
gi|432456890|ref|ZP_19699077.1| hypothetical protein A15C_02676 [Escherichia coli KTE201]
gi|432460920|ref|ZP_19703071.1| hypothetical protein A15I_01787 [Escherichia coli KTE204]
gi|432465851|ref|ZP_19707942.1| hypothetical protein A15K_01789 [Escherichia coli KTE205]
gi|432471161|ref|ZP_19713208.1| hypothetical protein A15M_02042 [Escherichia coli KTE206]
gi|432476043|ref|ZP_19718043.1| hypothetical protein A15Q_02227 [Escherichia coli KTE208]
gi|432485621|ref|ZP_19727537.1| hypothetical protein A15Y_02100 [Escherichia coli KTE212]
gi|432489474|ref|ZP_19731355.1| hypothetical protein A171_01393 [Escherichia coli KTE213]
gi|432495923|ref|ZP_19737722.1| hypothetical protein A173_03082 [Escherichia coli KTE214]
gi|432500218|ref|ZP_19741978.1| hypothetical protein A177_02308 [Escherichia coli KTE216]
gi|432504590|ref|ZP_19746320.1| hypothetical protein A17E_01643 [Escherichia coli KTE220]
gi|432514096|ref|ZP_19751322.1| hypothetical protein A17M_01948 [Escherichia coli KTE224]
gi|432517933|ref|ZP_19755125.1| hypothetical protein A17U_00895 [Escherichia coli KTE228]
gi|432523964|ref|ZP_19761096.1| hypothetical protein A17Y_02076 [Escherichia coli KTE230]
gi|432534112|ref|ZP_19771090.1| hypothetical protein A193_02548 [Escherichia coli KTE234]
gi|432538031|ref|ZP_19774934.1| hypothetical protein A195_01644 [Escherichia coli KTE235]
gi|432543379|ref|ZP_19780228.1| hypothetical protein A197_01960 [Escherichia coli KTE236]
gi|432548869|ref|ZP_19785643.1| hypothetical protein A199_02330 [Escherichia coli KTE237]
gi|432553822|ref|ZP_19790549.1| hypothetical protein A1S3_02216 [Escherichia coli KTE47]
gi|432558945|ref|ZP_19795623.1| hypothetical protein A1S7_02591 [Escherichia coli KTE49]
gi|432568857|ref|ZP_19805375.1| hypothetical protein A1SE_02437 [Escherichia coli KTE53]
gi|432573893|ref|ZP_19810375.1| hypothetical protein A1SI_02587 [Escherichia coli KTE55]
gi|432584005|ref|ZP_19820404.1| hypothetical protein A1SM_03225 [Escherichia coli KTE57]
gi|432588121|ref|ZP_19824477.1| hypothetical protein A1SO_02471 [Escherichia coli KTE58]
gi|432593079|ref|ZP_19829397.1| hypothetical protein A1SS_02497 [Escherichia coli KTE60]
gi|432597842|ref|ZP_19834118.1| hypothetical protein A1SW_02555 [Escherichia coli KTE62]
gi|432602389|ref|ZP_19838633.1| hypothetical protein A1U5_02224 [Escherichia coli KTE66]
gi|432607686|ref|ZP_19843875.1| hypothetical protein A1U7_02684 [Escherichia coli KTE67]
gi|432611598|ref|ZP_19847761.1| hypothetical protein A1UG_01951 [Escherichia coli KTE72]
gi|432616830|ref|ZP_19852951.1| hypothetical protein A1UM_02263 [Escherichia coli KTE75]
gi|432622066|ref|ZP_19858100.1| hypothetical protein A1UO_01937 [Escherichia coli KTE76]
gi|432631603|ref|ZP_19867532.1| hypothetical protein A1UW_01976 [Escherichia coli KTE80]
gi|432641248|ref|ZP_19877085.1| hypothetical protein A1W1_02109 [Escherichia coli KTE83]
gi|432646362|ref|ZP_19882152.1| hypothetical protein A1W5_02107 [Escherichia coli KTE86]
gi|432651299|ref|ZP_19887056.1| hypothetical protein A1W7_02300 [Escherichia coli KTE87]
gi|432655940|ref|ZP_19891646.1| hypothetical protein A1WE_02051 [Escherichia coli KTE93]
gi|432666233|ref|ZP_19901815.1| hypothetical protein A1Y3_02832 [Escherichia coli KTE116]
gi|432670946|ref|ZP_19906477.1| hypothetical protein A1Y7_02482 [Escherichia coli KTE119]
gi|432680445|ref|ZP_19915822.1| hypothetical protein A1YW_02189 [Escherichia coli KTE143]
gi|432694609|ref|ZP_19929816.1| hypothetical protein A31I_02081 [Escherichia coli KTE162]
gi|432699216|ref|ZP_19934374.1| hypothetical protein A31M_01958 [Escherichia coli KTE169]
gi|432710771|ref|ZP_19945833.1| hypothetical protein WCG_04100 [Escherichia coli KTE6]
gi|432713572|ref|ZP_19948613.1| hypothetical protein WCI_01937 [Escherichia coli KTE8]
gi|432718985|ref|ZP_19953954.1| hypothetical protein WCK_02598 [Escherichia coli KTE9]
gi|432723281|ref|ZP_19958201.1| hypothetical protein WE1_02310 [Escherichia coli KTE17]
gi|432727868|ref|ZP_19962747.1| hypothetical protein WE3_02312 [Escherichia coli KTE18]
gi|432732551|ref|ZP_19967384.1| hypothetical protein WGK_02393 [Escherichia coli KTE45]
gi|432741559|ref|ZP_19976278.1| hypothetical protein WEE_02240 [Escherichia coli KTE23]
gi|432745840|ref|ZP_19980509.1| hypothetical protein WGG_01941 [Escherichia coli KTE43]
gi|432750334|ref|ZP_19984941.1| hypothetical protein WEQ_01751 [Escherichia coli KTE29]
gi|432754603|ref|ZP_19989154.1| hypothetical protein WEA_01578 [Escherichia coli KTE22]
gi|432759635|ref|ZP_19994130.1| hypothetical protein A1S1_01752 [Escherichia coli KTE46]
gi|432765220|ref|ZP_19999659.1| hypothetical protein A1S5_02778 [Escherichia coli KTE48]
gi|432770831|ref|ZP_20005175.1| hypothetical protein A1S9_03629 [Escherichia coli KTE50]
gi|432774953|ref|ZP_20009235.1| hypothetical protein A1SG_03038 [Escherichia coli KTE54]
gi|432778733|ref|ZP_20012976.1| hypothetical protein A1SQ_02396 [Escherichia coli KTE59]
gi|432783742|ref|ZP_20017923.1| hypothetical protein A1SY_02581 [Escherichia coli KTE63]
gi|432787679|ref|ZP_20021811.1| hypothetical protein A1U3_01789 [Escherichia coli KTE65]
gi|432793071|ref|ZP_20027156.1| hypothetical protein A1US_02284 [Escherichia coli KTE78]
gi|432799028|ref|ZP_20033051.1| hypothetical protein A1UU_03767 [Escherichia coli KTE79]
gi|432802017|ref|ZP_20035998.1| hypothetical protein A1W3_02272 [Escherichia coli KTE84]
gi|432809526|ref|ZP_20043419.1| hypothetical protein A1WM_00679 [Escherichia coli KTE101]
gi|432815563|ref|ZP_20049348.1| hypothetical protein A1Y1_01964 [Escherichia coli KTE115]
gi|432821116|ref|ZP_20054808.1| hypothetical protein A1Y5_02710 [Escherichia coli KTE118]
gi|432827260|ref|ZP_20060912.1| hypothetical protein A1YA_03975 [Escherichia coli KTE123]
gi|432831844|ref|ZP_20065418.1| hypothetical protein A1YM_03630 [Escherichia coli KTE135]
gi|432834857|ref|ZP_20068396.1| hypothetical protein A1YO_02210 [Escherichia coli KTE136]
gi|432839489|ref|ZP_20072976.1| hypothetical protein A1YQ_02447 [Escherichia coli KTE140]
gi|432844738|ref|ZP_20077637.1| hypothetical protein A1YS_02377 [Escherichia coli KTE141]
gi|432850851|ref|ZP_20081546.1| hypothetical protein A1YY_01675 [Escherichia coli KTE144]
gi|432869067|ref|ZP_20089862.1| hypothetical protein A313_00671 [Escherichia coli KTE147]
gi|432886806|ref|ZP_20100895.1| hypothetical protein A31C_02610 [Escherichia coli KTE158]
gi|432894680|ref|ZP_20106501.1| hypothetical protein A31K_03643 [Escherichia coli KTE165]
gi|432898839|ref|ZP_20109531.1| hypothetical protein A13U_02287 [Escherichia coli KTE192]
gi|432905028|ref|ZP_20113934.1| hypothetical protein A13Y_02300 [Escherichia coli KTE194]
gi|432912907|ref|ZP_20118717.1| hypothetical protein A13Q_02327 [Escherichia coli KTE190]
gi|432919285|ref|ZP_20123416.1| hypothetical protein A133_02328 [Escherichia coli KTE173]
gi|432927092|ref|ZP_20128632.1| hypothetical protein A135_02677 [Escherichia coli KTE175]
gi|432938044|ref|ZP_20136421.1| hypothetical protein A13C_00840 [Escherichia coli KTE183]
gi|432961885|ref|ZP_20151675.1| hypothetical protein A15E_02593 [Escherichia coli KTE202]
gi|432967988|ref|ZP_20156903.1| hypothetical protein A15G_03087 [Escherichia coli KTE203]
gi|432972019|ref|ZP_20160887.1| hypothetical protein A15O_02590 [Escherichia coli KTE207]
gi|432978465|ref|ZP_20167287.1| hypothetical protein A15S_04380 [Escherichia coli KTE209]
gi|432981269|ref|ZP_20170045.1| hypothetical protein A15W_02393 [Escherichia coli KTE211]
gi|432985548|ref|ZP_20174272.1| hypothetical protein A175_01997 [Escherichia coli KTE215]
gi|432990869|ref|ZP_20179533.1| hypothetical protein A179_02643 [Escherichia coli KTE217]
gi|432995524|ref|ZP_20184135.1| hypothetical protein A17A_02607 [Escherichia coli KTE218]
gi|433000100|ref|ZP_20188630.1| hypothetical protein A17K_02434 [Escherichia coli KTE223]
gi|433005312|ref|ZP_20193742.1| hypothetical protein A17S_02879 [Escherichia coli KTE227]
gi|433007810|ref|ZP_20196228.1| hypothetical protein A17W_00510 [Escherichia coli KTE229]
gi|433014000|ref|ZP_20202362.1| hypothetical protein WI5_01825 [Escherichia coli KTE104]
gi|433018825|ref|ZP_20207070.1| hypothetical protein WI7_01870 [Escherichia coli KTE105]
gi|433023629|ref|ZP_20211630.1| hypothetical protein WI9_01795 [Escherichia coli KTE106]
gi|433028794|ref|ZP_20216655.1| hypothetical protein WIA_01886 [Escherichia coli KTE109]
gi|433033604|ref|ZP_20221336.1| hypothetical protein WIC_02177 [Escherichia coli KTE112]
gi|433038784|ref|ZP_20226388.1| hypothetical protein WIE_02128 [Escherichia coli KTE113]
gi|433053371|ref|ZP_20240566.1| hypothetical protein WIK_02179 [Escherichia coli KTE122]
gi|433058248|ref|ZP_20245307.1| hypothetical protein WIM_02017 [Escherichia coli KTE124]
gi|433063259|ref|ZP_20250192.1| hypothetical protein WIO_02079 [Escherichia coli KTE125]
gi|433068148|ref|ZP_20254949.1| hypothetical protein WIQ_02030 [Escherichia coli KTE128]
gi|433072973|ref|ZP_20259638.1| hypothetical protein WIS_01928 [Escherichia coli KTE129]
gi|433077942|ref|ZP_20264493.1| hypothetical protein WIU_01813 [Escherichia coli KTE131]
gi|433082728|ref|ZP_20269193.1| hypothetical protein WIW_01870 [Escherichia coli KTE133]
gi|433087395|ref|ZP_20273779.1| hypothetical protein WIY_01843 [Escherichia coli KTE137]
gi|433096684|ref|ZP_20282881.1| hypothetical protein WK3_01886 [Escherichia coli KTE139]
gi|433101319|ref|ZP_20287416.1| hypothetical protein WK5_01874 [Escherichia coli KTE145]
gi|433106048|ref|ZP_20292039.1| hypothetical protein WK7_01915 [Escherichia coli KTE148]
gi|433111080|ref|ZP_20296945.1| hypothetical protein WK9_01943 [Escherichia coli KTE150]
gi|433115713|ref|ZP_20301517.1| hypothetical protein WKA_01902 [Escherichia coli KTE153]
gi|433120402|ref|ZP_20306080.1| hypothetical protein WKC_01825 [Escherichia coli KTE157]
gi|433125350|ref|ZP_20310925.1| hypothetical protein WKE_01846 [Escherichia coli KTE160]
gi|433139413|ref|ZP_20324684.1| hypothetical protein WKM_01694 [Escherichia coli KTE167]
gi|433144393|ref|ZP_20329545.1| hypothetical protein WKO_01926 [Escherichia coli KTE168]
gi|433149361|ref|ZP_20334397.1| hypothetical protein WKQ_02012 [Escherichia coli KTE174]
gi|433153930|ref|ZP_20338885.1| hypothetical protein WKS_01858 [Escherichia coli KTE176]
gi|433158897|ref|ZP_20343744.1| hypothetical protein WKU_01971 [Escherichia coli KTE177]
gi|433163640|ref|ZP_20348385.1| hypothetical protein WKW_01845 [Escherichia coli KTE179]
gi|433168761|ref|ZP_20353394.1| hypothetical protein WKY_01999 [Escherichia coli KTE180]
gi|433173729|ref|ZP_20358263.1| hypothetical protein WGQ_01990 [Escherichia coli KTE232]
gi|433178510|ref|ZP_20362922.1| hypothetical protein WGM_02151 [Escherichia coli KTE82]
gi|433183422|ref|ZP_20367687.1| hypothetical protein WGO_01860 [Escherichia coli KTE85]
gi|433188594|ref|ZP_20372697.1| hypothetical protein WGS_01665 [Escherichia coli KTE88]
gi|433198425|ref|ZP_20382337.1| hypothetical protein WGW_01969 [Escherichia coli KTE94]
gi|433203442|ref|ZP_20387223.1| hypothetical protein WGY_02023 [Escherichia coli KTE95]
gi|433208021|ref|ZP_20391702.1| hypothetical protein WI1_01785 [Escherichia coli KTE97]
gi|433212664|ref|ZP_20396267.1| hypothetical protein WI3_01843 [Escherichia coli KTE99]
gi|433323101|ref|ZP_20400471.1| hypothetical protein B185_006557 [Escherichia coli J96]
gi|442598191|ref|ZP_21015964.1| FIG000859: hypothetical protein YebC [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|442604533|ref|ZP_21019378.1| FIG000859: hypothetical protein YebC [Escherichia coli Nissle 1917]
gi|444925080|ref|ZP_21244486.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
09BKT078844]
gi|444930930|ref|ZP_21250016.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0814]
gi|444936223|ref|ZP_21255060.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0815]
gi|444941856|ref|ZP_21260430.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0816]
gi|444947388|ref|ZP_21265743.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0839]
gi|444953050|ref|ZP_21271191.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0848]
gi|444958555|ref|ZP_21276455.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1753]
gi|444963670|ref|ZP_21281329.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1775]
gi|444969603|ref|ZP_21287010.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1793]
gi|444974944|ref|ZP_21292126.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1805]
gi|444980439|ref|ZP_21297382.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
ATCC 700728]
gi|444985761|ref|ZP_21302576.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA11]
gi|444991047|ref|ZP_21307729.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA19]
gi|444996247|ref|ZP_21312786.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA13]
gi|445001881|ref|ZP_21318299.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA2]
gi|445007344|ref|ZP_21323627.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA47]
gi|445012459|ref|ZP_21328600.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA48]
gi|445018198|ref|ZP_21334193.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA8]
gi|445023849|ref|ZP_21339707.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
7.1982]
gi|445029090|ref|ZP_21344802.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1781]
gi|445034533|ref|ZP_21350095.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1762]
gi|445040250|ref|ZP_21355656.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA35]
gi|445045370|ref|ZP_21360662.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
3.4880]
gi|445050968|ref|ZP_21366062.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.0083]
gi|445056778|ref|ZP_21371667.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0670]
gi|450215912|ref|ZP_21895592.1| hypothetical protein C202_09046 [Escherichia coli O08]
gi|452968381|ref|ZP_21966608.1| hypothetical protein EC4009_RS06815 [Escherichia coli O157:H7 str.
EC4009]
gi|54040166|sp|P67176.1|YEBC_ECO57 RecName: Full=Probable transcriptional regulatory protein YebC
gi|54042647|sp|P67175.1|YEBC_ECOL6 RecName: Full=Probable transcriptional regulatory protein YebC
gi|118577828|sp|Q0TGW8.1|YEBC_ECOL5 RecName: Full=Probable transcriptional regulatory protein YebC
gi|119392016|sp|Q1RAS0.1|YEBC_ECOUT RecName: Full=Probable transcriptional regulatory protein YebC
gi|12515920|gb|AAG56854.1|AE005408_12 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26108533|gb|AAN80735.1|AE016761_310 Protein yebC [Escherichia coli CFT073]
gi|13362042|dbj|BAB35997.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|91072663|gb|ABE07544.1| hypothetical protein UTI89_C2068 [Escherichia coli UTI89]
gi|110343574|gb|ABG69811.1| putative cytoplasmic protein [Escherichia coli 536]
gi|115513140|gb|ABJ01215.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|157067013|gb|ABV06268.1| conserved hypothetical protein TIGR01033 [Escherichia coli HS]
gi|157078967|gb|ABV18675.1| conserved hypothetical protein TIGR01033 [Escherichia coli E24377A]
gi|170520953|gb|ACB19131.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
gi|187768083|gb|EDU31927.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|188017405|gb|EDU55527.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|188487542|gb|EDU62645.1| conserved hypothetical protein TIGR01033 [Escherichia coli 53638]
gi|188999493|gb|EDU68479.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|189355163|gb|EDU73582.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189360282|gb|EDU78701.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|189367318|gb|EDU85734.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|189370673|gb|EDU89089.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|189376041|gb|EDU94457.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|190906708|gb|EDV66313.1| conserved hypothetical protein [Escherichia coli F11]
gi|208725024|gb|EDZ74731.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4206]
gi|208731253|gb|EDZ79942.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4045]
gi|208740613|gb|EDZ88295.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4042]
gi|209161743|gb|ACI39176.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. EC4115]
gi|209767438|gb|ACI82031.1| hypothetical protein ECs2574 [Escherichia coli]
gi|209767440|gb|ACI82032.1| hypothetical protein ECs2574 [Escherichia coli]
gi|209767442|gb|ACI82033.1| hypothetical protein ECs2574 [Escherichia coli]
gi|209767444|gb|ACI82034.1| hypothetical protein ECs2574 [Escherichia coli]
gi|209767446|gb|ACI82035.1| hypothetical protein ECs2574 [Escherichia coli]
gi|215265149|emb|CAS09537.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|217318093|gb|EEC26520.1| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7
str. TW14588]
gi|218352162|emb|CAU97901.1| conserved hypothetical protein [Escherichia coli 55989]
gi|218356116|emb|CAQ88733.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
gi|218361220|emb|CAQ98804.1| conserved hypothetical protein [Escherichia coli IAI1]
gi|218365498|emb|CAR03225.1| conserved hypothetical protein [Escherichia coli S88]
gi|218369550|emb|CAR17319.1| conserved hypothetical protein [Escherichia coli IAI39]
gi|218427366|emb|CAR08261.2| conserved hypothetical protein [Escherichia coli ED1a]
gi|218432462|emb|CAR13355.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|222033613|emb|CAP76354.1| UPF0082 protein yebC [Escherichia coli LF82]
gi|226900575|gb|EEH86834.1| yebC [Escherichia sp. 3_2_53FAA]
gi|227837281|gb|EEJ47747.1| conserved hypothetical protein [Escherichia coli 83972]
gi|242377585|emb|CAQ32340.1| conserved protein [Escherichia coli BL21(DE3)]
gi|253324223|gb|ACT28825.1| protein of unknown function DUF28 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973825|gb|ACT39496.1| hypothetical protein ECB_01835 [Escherichia coli B str. REL606]
gi|253978019|gb|ACT43689.1| hypothetical protein ECD_01835 [Escherichia coli BL21(DE3)]
gi|254592888|gb|ACT72249.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
gi|257754453|dbj|BAI25955.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
gi|257764755|dbj|BAI36250.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
gi|281178934|dbj|BAI55264.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284921784|emb|CBG34857.1| conserved hypothetical protein [Escherichia coli 042]
gi|290762919|gb|ADD56880.1| UPF0082 protein yebC [Escherichia coli O55:H7 str. CB9615]
gi|291427567|gb|EFF00594.1| UPF0082 protein yebC [Escherichia coli FVEC1412]
gi|291432827|gb|EFF05806.1| hypothetical protein ECDG_01735 [Escherichia coli B185]
gi|291470644|gb|EFF13128.1| hypothetical protein ECEG_01132 [Escherichia coli B354]
gi|294491341|gb|ADE90097.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
IHE3034]
gi|298278443|gb|EFI19957.1| yebC protein [Escherichia coli FVEC1302]
gi|300297537|gb|EFJ53922.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
185-1]
gi|300307324|gb|EFJ61844.1| hypothetical protein HMPREF9553_02062 [Escherichia coli MS 200-1]
gi|300357271|gb|EFJ73141.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
198-1]
gi|300399736|gb|EFJ83274.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 69-1]
gi|300406369|gb|EFJ89907.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 45-1]
gi|300418889|gb|EFK02200.1| hypothetical protein HMPREF9548_03065 [Escherichia coli MS 182-1]
gi|300458951|gb|EFK22444.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 21-1]
gi|300463123|gb|EFK26616.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
187-1]
gi|300523265|gb|EFK44334.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
119-7]
gi|300845801|gb|EFK73561.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 78-1]
gi|305852465|gb|EFM52916.1| hypothetical protein ECNC101_19736 [Escherichia coli NC101]
gi|306906193|gb|EFN36711.1| protein of unknown function DUF28 [Escherichia coli W]
gi|307553883|gb|ADN46658.1| conserved hypothetical protein [Escherichia coli ABU 83972]
gi|307626653|gb|ADN70957.1| hypothetical protein UM146_07830 [Escherichia coli UM146]
gi|309702088|emb|CBJ01402.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|312288531|gb|EFR16433.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312946464|gb|ADR27291.1| hypothetical protein NRG857_09345 [Escherichia coli O83:H1 str. NRG
857C]
gi|315061170|gb|ADT75497.1| conserved protein [Escherichia coli W]
gi|315286567|gb|EFU46002.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
110-3]
gi|315290343|gb|EFU49719.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
153-1]
gi|315296555|gb|EFU55852.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 16-3]
gi|320188565|gb|EFW63227.1| hypothetical protein ECoD_05063 [Escherichia coli O157:H7 str.
EC1212]
gi|320194420|gb|EFW69051.1| hypothetical protein EcoM_03340 [Escherichia coli WV_060327]
gi|320198058|gb|EFW72666.1| hypothetical protein ECoL_05064 [Escherichia coli EC4100B]
gi|320641718|gb|EFX11106.1| hypothetical protein ECO5101_14689 [Escherichia coli O157:H7 str.
G5101]
gi|320647078|gb|EFX15911.1| hypothetical protein ECO9389_19185 [Escherichia coli O157:H- str.
493-89]
gi|320652361|gb|EFX20659.1| hypothetical protein ECO2687_06392 [Escherichia coli O157:H- str. H
2687]
gi|320657962|gb|EFX25724.1| hypothetical protein ECO7815_20070 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658535|gb|EFX26229.1| hypothetical protein ECO5905_21790 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668433|gb|EFX35260.1| hypothetical protein ECOSU61_18914 [Escherichia coli O157:H7 str.
LSU-61]
gi|323152647|gb|EFZ38923.1| hypothetical protein ECEPECA14_5459 [Escherichia coli EPECa14]
gi|323180661|gb|EFZ66206.1| hypothetical protein ECOK1180_0650 [Escherichia coli OK1180]
gi|323186360|gb|EFZ71710.1| hypothetical protein ECOK1357_0309 [Escherichia coli OK1357]
gi|323186872|gb|EFZ72191.1| hypothetical protein ECRN5871_4929 [Escherichia coli RN587/1]
gi|323378253|gb|ADX50521.1| protein of unknown function DUF28 [Escherichia coli KO11FL]
gi|323937122|gb|EGB33402.1| yebC [Escherichia coli E1520]
gi|323952366|gb|EGB48239.1| yebC [Escherichia coli H252]
gi|323956495|gb|EGB52237.1| yebC [Escherichia coli H263]
gi|323961919|gb|EGB57518.1| yebC [Escherichia coli H489]
gi|323968286|gb|EGB63693.1| yebC [Escherichia coli M863]
gi|323977951|gb|EGB73037.1| yebC [Escherichia coli TW10509]
gi|324007229|gb|EGB76448.1| hypothetical protein HMPREF9532_03086 [Escherichia coli MS 57-2]
gi|324012867|gb|EGB82086.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS 60-1]
gi|324113600|gb|EGC07575.1| yebC [Escherichia fergusonii B253]
gi|324118924|gb|EGC12813.1| yebC [Escherichia coli E1167]
gi|325496993|gb|EGC94852.1| hypothetical protein ECD227_1090 [Escherichia fergusonii ECD227]
gi|326342244|gb|EGD66025.1| protein of unknown function DUF28 [Escherichia coli O157:H7 str.
1044]
gi|326343794|gb|EGD67556.1| hypothetical protein ECF_02227 [Escherichia coli O157:H7 str. 1125]
gi|327252993|gb|EGE64647.1| hypothetical protein ECSTEC7V_2238 [Escherichia coli STEC_7v]
gi|330911674|gb|EGH40184.1| hypothetical protein ECAA86_02033 [Escherichia coli AA86]
gi|331056161|gb|EGI28170.1| protein YebC [Escherichia coli TA206]
gi|331063753|gb|EGI35664.1| protein YebC [Escherichia coli TA271]
gi|331069592|gb|EGI40979.1| protein YebC [Escherichia coli TA280]
gi|331074205|gb|EGI45525.1| protein YebC [Escherichia coli H591]
gi|331079585|gb|EGI50782.1| protein YebC [Escherichia coli H299]
gi|333969951|gb|AEG36756.1| hypothetical protein ECNA114_1928 [Escherichia coli NA114]
gi|338770186|gb|EGP24953.1| hypothetical protein PPECC33_17610 [Escherichia coli PCN033]
gi|340733988|gb|EGR63118.1| hypothetical protein HUSEC41_10092 [Escherichia coli O104:H4 str.
01-09591]
gi|340740288|gb|EGR74513.1| hypothetical protein HUSEC_10504 [Escherichia coli O104:H4 str.
LB226692]
gi|341918545|gb|EGT68158.1| hypothetical protein C22711_2188 [Escherichia coli O104:H4 str.
C227-11]
gi|345338248|gb|EGW70679.1| hypothetical protein ECSTECC16502_2372 [Escherichia coli
STEC_C165-02]
gi|345339965|gb|EGW72390.1| hypothetical protein ECSTECB2F1_1998 [Escherichia coli STEC_B2F1]
gi|345340677|gb|EGW73095.1| hypothetical protein EC253486_2615 [Escherichia coli 2534-86]
gi|345350127|gb|EGW82402.1| hypothetical protein ECSTEC94C_2250 [Escherichia coli STEC_94C]
gi|345355308|gb|EGW87519.1| hypothetical protein EC30301_2132 [Escherichia coli 3030-1]
gi|349738231|gb|AEQ12937.1| conserved protein, UPF0082 family [Escherichia coli O7:K1 str.
CE10]
gi|354861634|gb|EHF22072.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. C236-11]
gi|354868987|gb|EHF29399.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. C227-11]
gi|354871083|gb|EHF31483.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 04-8351]
gi|354872910|gb|EHF33287.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 09-7901]
gi|354881483|gb|EHF41813.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-3677]
gi|354891201|gb|EHF51436.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4404]
gi|354894034|gb|EHF54231.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4522]
gi|354896181|gb|EHF56357.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354899156|gb|EHF59306.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4623]
gi|354900891|gb|EHF61023.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354913920|gb|EHF73908.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354917649|gb|EHF77612.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354919590|gb|EHF79533.1| UPF0082 protein yebC [Escherichia coli O104:H4 str. 11-4632 C4]
gi|355351983|gb|EHG01170.1| hypothetical protein i01_02456 [Escherichia coli cloneA_i1]
gi|355420465|gb|AER84662.1| hypothetical protein i02_2094 [Escherichia coli str. 'clone D i2']
gi|355425385|gb|AER89581.1| hypothetical protein i14_2094 [Escherichia coli str. 'clone D i14']
gi|371597104|gb|EHN85929.1| UPF0082 protein yebC [Escherichia coli TA124]
gi|371599059|gb|EHN87849.1| UPF0082 protein yebC [Escherichia coli H494]
gi|371610001|gb|EHN98533.1| hypothetical protein ESNG_01940 [Escherichia coli B093]
gi|371611598|gb|EHO00120.1| hypothetical protein ESOG_03478 [Escherichia coli E101]
gi|371614142|gb|EHO02627.1| hypothetical protein ESPG_00877 [Escherichia coli H397]
gi|373243807|gb|EHP63305.1| UPF0082 protein yebC [Escherichia coli 4_1_47FAA]
gi|374359107|gb|AEZ40814.1| hypothetical protein ECO55CA74_11150 [Escherichia coli O55:H7 str.
RM12579]
gi|375319029|gb|EHS65307.1| hypothetical protein T22_20634 [Escherichia coli O157:H43 str. T22]
gi|377845717|gb|EHU10739.1| hypothetical protein ECDEC1A_2016 [Escherichia coli DEC1A]
gi|377846428|gb|EHU11440.1| hypothetical protein ECDEC1C_2225 [Escherichia coli DEC1C]
gi|377849376|gb|EHU14350.1| hypothetical protein ECDEC1B_2222 [Escherichia coli DEC1B]
gi|377858684|gb|EHU23523.1| hypothetical protein ECDEC1D_2548 [Escherichia coli DEC1D]
gi|377862260|gb|EHU27073.1| hypothetical protein ECDEC1E_2229 [Escherichia coli DEC1E]
gi|377865653|gb|EHU30444.1| hypothetical protein ECDEC2A_2300 [Escherichia coli DEC2A]
gi|377876162|gb|EHU40770.1| hypothetical protein ECDEC2B_2228 [Escherichia coli DEC2B]
gi|377880256|gb|EHU44827.1| hypothetical protein ECDEC2C_2256 [Escherichia coli DEC2C]
gi|377881892|gb|EHU46449.1| hypothetical protein ECDEC2D_2063 [Escherichia coli DEC2D]
gi|377894068|gb|EHU58493.1| hypothetical protein ECDEC2E_2129 [Escherichia coli DEC2E]
gi|377895103|gb|EHU59516.1| hypothetical protein ECDEC3A_2467 [Escherichia coli DEC3A]
gi|377895726|gb|EHU60137.1| hypothetical protein ECDEC3B_2692 [Escherichia coli DEC3B]
gi|377906684|gb|EHU70926.1| hypothetical protein ECDEC3C_2980 [Escherichia coli DEC3C]
gi|377912020|gb|EHU76185.1| hypothetical protein ECDEC3D_2569 [Escherichia coli DEC3D]
gi|377914742|gb|EHU78864.1| hypothetical protein ECDEC3E_2757 [Escherichia coli DEC3E]
gi|377923291|gb|EHU87258.1| hypothetical protein ECDEC3F_2762 [Escherichia coli DEC3F]
gi|377928401|gb|EHU92312.1| hypothetical protein ECDEC4A_2514 [Escherichia coli DEC4A]
gi|377932973|gb|EHU96819.1| hypothetical protein ECDEC4B_2472 [Escherichia coli DEC4B]
gi|377943767|gb|EHV07476.1| hypothetical protein ECDEC4C_2558 [Escherichia coli DEC4C]
gi|377944684|gb|EHV08386.1| hypothetical protein ECDEC4D_2473 [Escherichia coli DEC4D]
gi|377949990|gb|EHV13621.1| hypothetical protein ECDEC4E_2486 [Escherichia coli DEC4E]
gi|377958936|gb|EHV22448.1| hypothetical protein ECDEC4F_2542 [Escherichia coli DEC4F]
gi|377961605|gb|EHV25072.1| hypothetical protein ECDEC5A_2237 [Escherichia coli DEC5A]
gi|377968890|gb|EHV32281.1| hypothetical protein ECDEC5B_2497 [Escherichia coli DEC5B]
gi|377976201|gb|EHV39512.1| hypothetical protein ECDEC5C_2311 [Escherichia coli DEC5C]
gi|377977204|gb|EHV40505.1| hypothetical protein ECDEC5D_2551 [Escherichia coli DEC5D]
gi|377985019|gb|EHV48241.1| hypothetical protein ECDEC5E_2177 [Escherichia coli DEC5E]
gi|378009411|gb|EHV72367.1| hypothetical protein ECDEC6D_2172 [Escherichia coli DEC6D]
gi|378010669|gb|EHV73614.1| hypothetical protein ECDEC6E_2303 [Escherichia coli DEC6E]
gi|378048577|gb|EHW10931.1| hypothetical protein ECDEC8A_2366 [Escherichia coli DEC8A]
gi|378050431|gb|EHW12759.1| hypothetical protein ECDEC8B_2600 [Escherichia coli DEC8B]
gi|378055013|gb|EHW17281.1| hypothetical protein ECDEC8C_2987 [Escherichia coli DEC8C]
gi|378062336|gb|EHW24513.1| hypothetical protein ECDEC8D_2609 [Escherichia coli DEC8D]
gi|378067147|gb|EHW29273.1| hypothetical protein ECDEC8E_2457 [Escherichia coli DEC8E]
gi|378076052|gb|EHW38065.1| hypothetical protein ECDEC9A_2368 [Escherichia coli DEC9A]
gi|378078982|gb|EHW40961.1| hypothetical protein ECDEC9B_2066 [Escherichia coli DEC9B]
gi|378084629|gb|EHW46531.1| hypothetical protein ECDEC9C_2294 [Escherichia coli DEC9C]
gi|378092126|gb|EHW53953.1| hypothetical protein ECDEC9D_2091 [Escherichia coli DEC9D]
gi|378096713|gb|EHW58483.1| hypothetical protein ECDEC9E_2564 [Escherichia coli DEC9E]
gi|378101302|gb|EHW62989.1| hypothetical protein ECDEC10A_2649 [Escherichia coli DEC10A]
gi|378107472|gb|EHW69092.1| hypothetical protein ECDEC10B_2935 [Escherichia coli DEC10B]
gi|378112251|gb|EHW73831.1| hypothetical protein ECDEC10C_2980 [Escherichia coli DEC10C]
gi|378117567|gb|EHW79081.1| hypothetical protein ECDEC10D_2601 [Escherichia coli DEC10D]
gi|378129239|gb|EHW90611.1| hypothetical protein ECDEC10E_2188 [Escherichia coli DEC10E]
gi|378133878|gb|EHW95211.1| hypothetical protein ECDEC10F_2952 [Escherichia coli DEC10F]
gi|378187413|gb|EHX48025.1| hypothetical protein ECDEC13A_2052 [Escherichia coli DEC13A]
gi|378202037|gb|EHX62477.1| hypothetical protein ECDEC13C_2340 [Escherichia coli DEC13C]
gi|378202277|gb|EHX62716.1| hypothetical protein ECDEC13B_1855 [Escherichia coli DEC13B]
gi|378205268|gb|EHX65683.1| hypothetical protein ECDEC13D_2110 [Escherichia coli DEC13D]
gi|378213929|gb|EHX74239.1| hypothetical protein ECDEC13E_2149 [Escherichia coli DEC13E]
gi|378218675|gb|EHX78946.1| hypothetical protein ECDEC14A_2030 [Escherichia coli DEC14A]
gi|378220662|gb|EHX80914.1| hypothetical protein ECDEC14B_2311 [Escherichia coli DEC14B]
gi|378229043|gb|EHX89193.1| hypothetical protein ECDEC14C_2206 [Escherichia coli DEC14C]
gi|378232152|gb|EHX92254.1| hypothetical protein ECDEC14D_2133 [Escherichia coli DEC14D]
gi|378238520|gb|EHX98521.1| hypothetical protein ECDEC15A_2395 [Escherichia coli DEC15A]
gi|378245219|gb|EHY05157.1| hypothetical protein ECDEC15B_2161 [Escherichia coli DEC15B]
gi|378248061|gb|EHY07976.1| hypothetical protein ECDEC15C_2114 [Escherichia coli DEC15C]
gi|378255594|gb|EHY15452.1| hypothetical protein ECDEC15D_2046 [Escherichia coli DEC15D]
gi|378259269|gb|EHY19082.1| hypothetical protein ECDEC15E_2387 [Escherichia coli DEC15E]
gi|380348435|gb|EIA36717.1| hypothetical protein OQA_08891 [Escherichia coli SCI-07]
gi|383392691|gb|AFH17649.1| hypothetical protein KO11_13375 [Escherichia coli KO11FL]
gi|383405418|gb|AFH11661.1| hypothetical protein WFL_10010 [Escherichia coli W]
gi|384470997|gb|EIE55088.1| hypothetical protein ECAI27_27830 [Escherichia coli AI27]
gi|385713243|gb|EIG50179.1| UPF0082 protein yebC [Escherichia coli B799]
gi|386140233|gb|EIG81385.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2741]
gi|386152639|gb|EIH03928.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0588]
gi|386158118|gb|EIH14455.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0259]
gi|386167899|gb|EIH34415.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.0497]
gi|386189388|gb|EIH78154.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0522]
gi|386197442|gb|EIH91646.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
JB1-95]
gi|386201630|gb|EII00621.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
96.154]
gi|386209122|gb|EII19613.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
9.0111]
gi|386231975|gb|EII59322.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.3884]
gi|386243851|gb|EII85584.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3003]
gi|386249671|gb|EII95842.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
TW07793]
gi|386258366|gb|EIJ13845.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
900105 (10e)]
gi|386796430|gb|AFJ29464.1| hypothetical protein CDCO157_2409 [Escherichia coli Xuzhou21]
gi|388335876|gb|EIL02425.1| hypothetical protein ECO9534_04133 [Escherichia coli O111:H11 str.
CVM9534]
gi|388355791|gb|EIL20613.1| hypothetical protein ECO9574_14381 [Escherichia coli O111:H8 str.
CVM9574]
gi|388361795|gb|EIL25872.1| hypothetical protein ECO9570_00789 [Escherichia coli O111:H8 str.
CVM9570]
gi|388369240|gb|EIL32855.1| hypothetical protein ECO9545_17796 [Escherichia coli O111:H11 str.
CVM9545]
gi|388375745|gb|EIL38746.1| hypothetical protein ECO9942_13401 [Escherichia coli O26:H11 str.
CVM9942]
gi|388381296|gb|EIL43864.1| hypothetical protein ECO10026_11534 [Escherichia coli O26:H11 str.
CVM10026]
gi|388396127|gb|EIL57256.1| hypothetical protein ECKD2_00871 [Escherichia coli KD2]
gi|388412334|gb|EIL72425.1| hypothetical protein ECHM605_21513 [Escherichia coli HM605]
gi|388417349|gb|EIL77203.1| hypothetical protein EC5761_02699 [Escherichia coli 576-1]
gi|388417467|gb|EIL77309.1| hypothetical protein ECMT8_12321 [Escherichia coli CUMT8]
gi|390645108|gb|EIN24292.1| hypothetical protein ECFDA517_2937 [Escherichia coli FDA517]
gi|390645161|gb|EIN24344.1| hypothetical protein ECFRIK1996_2720 [Escherichia coli FRIK1996]
gi|390645982|gb|EIN25120.1| hypothetical protein ECFDA505_2680 [Escherichia coli FDA505]
gi|390663572|gb|EIN41068.1| hypothetical protein EC93001_2833 [Escherichia coli 93-001]
gi|390664884|gb|EIN42212.1| hypothetical protein ECFRIK1985_2830 [Escherichia coli FRIK1985]
gi|390666003|gb|EIN43209.1| hypothetical protein ECFRIK1990_2834 [Escherichia coli FRIK1990]
gi|390681563|gb|EIN57356.1| hypothetical protein ECPA3_2611 [Escherichia coli PA3]
gi|390684606|gb|EIN60217.1| hypothetical protein ECPA5_2671 [Escherichia coli PA5]
gi|390685585|gb|EIN61055.1| hypothetical protein ECPA9_2789 [Escherichia coli PA9]
gi|390701434|gb|EIN75658.1| hypothetical protein ECPA10_2821 [Escherichia coli PA10]
gi|390703085|gb|EIN77136.1| hypothetical protein ECPA15_2905 [Escherichia coli PA15]
gi|390703783|gb|EIN77778.1| hypothetical protein ECPA14_2778 [Escherichia coli PA14]
gi|390715483|gb|EIN88328.1| hypothetical protein ECPA22_2714 [Escherichia coli PA22]
gi|390726927|gb|EIN99355.1| hypothetical protein ECPA25_2448 [Escherichia coli PA25]
gi|390727250|gb|EIN99667.1| hypothetical protein ECPA24_2585 [Escherichia coli PA24]
gi|390729720|gb|EIO01880.1| hypothetical protein ECPA28_2792 [Escherichia coli PA28]
gi|390745140|gb|EIO15960.1| hypothetical protein ECPA32_2728 [Escherichia coli PA32]
gi|390745976|gb|EIO16751.1| hypothetical protein ECPA31_2549 [Escherichia coli PA31]
gi|390747529|gb|EIO18082.1| hypothetical protein ECPA33_2722 [Escherichia coli PA33]
gi|390759410|gb|EIO28808.1| hypothetical protein ECPA40_2870 [Escherichia coli PA40]
gi|390769893|gb|EIO38789.1| hypothetical protein ECPA41_2729 [Escherichia coli PA41]
gi|390771363|gb|EIO40050.1| hypothetical protein ECPA39_2709 [Escherichia coli PA39]
gi|390771827|gb|EIO40482.1| hypothetical protein ECPA42_2875 [Escherichia coli PA42]
gi|390782839|gb|EIO50473.1| hypothetical protein ECTW06591_2331 [Escherichia coli TW06591]
gi|390790963|gb|EIO58358.1| hypothetical protein ECTW10246_2906 [Escherichia coli TW10246]
gi|390796731|gb|EIO63997.1| hypothetical protein ECTW07945_2666 [Escherichia coli TW07945]
gi|390798410|gb|EIO65606.1| hypothetical protein ECTW11039_2735 [Escherichia coli TW11039]
gi|390808587|gb|EIO75426.1| hypothetical protein ECTW09109_2861 [Escherichia coli TW09109]
gi|390809733|gb|EIO76515.1| hypothetical protein ECTW09098_2750 [Escherichia coli TW09098]
gi|390816720|gb|EIO83180.1| hypothetical protein ECTW10119_2965 [Escherichia coli TW10119]
gi|390829251|gb|EIO94859.1| hypothetical protein ECEC4203_2687 [Escherichia coli EC4203]
gi|390832340|gb|EIO97598.1| hypothetical protein ECTW09195_2774 [Escherichia coli TW09195]
gi|390833920|gb|EIO98896.1| hypothetical protein ECEC4196_2655 [Escherichia coli EC4196]
gi|390848965|gb|EIP12413.1| hypothetical protein ECTW14301_2575 [Escherichia coli TW14301]
gi|390850591|gb|EIP13952.1| hypothetical protein ECTW14313_2628 [Escherichia coli TW14313]
gi|390852293|gb|EIP15462.1| hypothetical protein ECEC4421_2661 [Escherichia coli EC4421]
gi|390863639|gb|EIP25771.1| hypothetical protein ECEC4422_2794 [Escherichia coli EC4422]
gi|390867999|gb|EIP29765.1| hypothetical protein ECEC4013_2890 [Escherichia coli EC4013]
gi|390873640|gb|EIP34821.1| hypothetical protein ECEC4402_2674 [Escherichia coli EC4402]
gi|390880512|gb|EIP41188.1| hypothetical protein ECEC4439_2626 [Escherichia coli EC4439]
gi|390885156|gb|EIP45405.1| hypothetical protein ECEC4436_2608 [Escherichia coli EC4436]
gi|390896602|gb|EIP55988.1| hypothetical protein ECEC4437_2763 [Escherichia coli EC4437]
gi|390900554|gb|EIP59773.1| hypothetical protein ECEC4448_2654 [Escherichia coli EC4448]
gi|390901114|gb|EIP60298.1| hypothetical protein ECEC1738_2719 [Escherichia coli EC1738]
gi|390908814|gb|EIP67615.1| hypothetical protein ECEC1734_2591 [Escherichia coli EC1734]
gi|390921247|gb|EIP79470.1| hypothetical protein ECEC1863_2336 [Escherichia coli EC1863]
gi|390922137|gb|EIP80245.1| hypothetical protein ECEC1845_2602 [Escherichia coli EC1845]
gi|394383061|gb|EJE60669.1| hypothetical protein ECO9602_08029 [Escherichia coli O111:H8 str.
CVM9602]
gi|394387417|gb|EJE64844.1| hypothetical protein ECO10224_20870 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398253|gb|EJE74440.1| hypothetical protein ECO9634_01889 [Escherichia coli O111:H8 str.
CVM9634]
gi|394410230|gb|EJE84640.1| hypothetical protein ECO10021_23826 [Escherichia coli O26:H11 str.
CVM10021]
gi|394411491|gb|EJE85719.1| hypothetical protein ECO9553_05125 [Escherichia coli O111:H11 str.
CVM9553]
gi|394416346|gb|EJE90142.1| hypothetical protein ECO10030_13154 [Escherichia coli O26:H11 str.
CVM10030]
gi|394424003|gb|EJE97208.1| hypothetical protein ECO9952_10429 [Escherichia coli O26:H11 str.
CVM9952]
gi|397785500|gb|EJK96350.1| hypothetical protein ECSTECO31_2057 [Escherichia coli STEC_O31]
gi|404291288|gb|EJZ48178.1| UPF0082 protein yebC [Escherichia sp. 1_1_43]
gi|406777380|gb|AFS56804.1| hypothetical protein O3M_10585 [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407053965|gb|AFS74016.1| hypothetical protein O3K_10610 [Escherichia coli O104:H4 str.
2011C-3493]
gi|407065703|gb|AFS86750.1| hypothetical protein O3O_15015 [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408067130|gb|EKH01573.1| hypothetical protein ECPA7_3231 [Escherichia coli PA7]
gi|408070911|gb|EKH05267.1| hypothetical protein ECFRIK920_2616 [Escherichia coli FRIK920]
gi|408076241|gb|EKH10469.1| hypothetical protein ECPA34_2772 [Escherichia coli PA34]
gi|408082015|gb|EKH16007.1| hypothetical protein ECFDA506_3131 [Escherichia coli FDA506]
gi|408084485|gb|EKH18257.1| hypothetical protein ECFDA507_2808 [Escherichia coli FDA507]
gi|408093250|gb|EKH26349.1| hypothetical protein ECFDA504_2761 [Escherichia coli FDA504]
gi|408099120|gb|EKH31774.1| hypothetical protein ECFRIK1999_2867 [Escherichia coli FRIK1999]
gi|408106935|gb|EKH39026.1| hypothetical protein ECFRIK1997_2899 [Escherichia coli FRIK1997]
gi|408110675|gb|EKH42462.1| hypothetical protein ECNE1487_3132 [Escherichia coli NE1487]
gi|408117797|gb|EKH48971.1| hypothetical protein ECNE037_3066 [Escherichia coli NE037]
gi|408123605|gb|EKH54344.1| hypothetical protein ECFRIK2001_3132 [Escherichia coli FRIK2001]
gi|408129595|gb|EKH59814.1| hypothetical protein ECPA4_2854 [Escherichia coli PA4]
gi|408141047|gb|EKH70527.1| hypothetical protein ECPA23_2732 [Escherichia coli PA23]
gi|408142738|gb|EKH72087.1| hypothetical protein ECPA49_2838 [Escherichia coli PA49]
gi|408147855|gb|EKH76764.1| hypothetical protein ECPA45_2858 [Escherichia coli PA45]
gi|408156200|gb|EKH84407.1| hypothetical protein ECTT12B_2742 [Escherichia coli TT12B]
gi|408163324|gb|EKH91191.1| hypothetical protein ECMA6_2904 [Escherichia coli MA6]
gi|408165744|gb|EKH93421.1| hypothetical protein EC5905_2968 [Escherichia coli 5905]
gi|408176669|gb|EKI03506.1| hypothetical protein ECCB7326_2726 [Escherichia coli CB7326]
gi|408183618|gb|EKI10043.1| hypothetical protein ECEC96038_2650 [Escherichia coli EC96038]
gi|408184448|gb|EKI10771.1| hypothetical protein EC5412_2706 [Escherichia coli 5412]
gi|408203037|gb|EKI28095.1| hypothetical protein ECARS42123_2224 [Escherichia coli ARS4.2123]
gi|408216780|gb|EKI41094.1| hypothetical protein EC07798_2490 [Escherichia coli 07798]
gi|408220400|gb|EKI44456.1| hypothetical protein ECPA38_2628 [Escherichia coli PA38]
gi|408229763|gb|EKI53190.1| hypothetical protein ECEC1735_2722 [Escherichia coli EC1735]
gi|408241143|gb|EKI63793.1| hypothetical protein ECEC1736_2612 [Escherichia coli EC1736]
gi|408245176|gb|EKI67569.1| hypothetical protein ECEC1737_2622 [Escherichia coli EC1737]
gi|408249555|gb|EKI71485.1| hypothetical protein ECEC1846_2586 [Escherichia coli EC1846]
gi|408260041|gb|EKI81176.1| hypothetical protein ECEC1847_2599 [Escherichia coli EC1847]
gi|408262023|gb|EKI82976.1| hypothetical protein ECEC1848_2786 [Escherichia coli EC1848]
gi|408267673|gb|EKI88120.1| hypothetical protein ECEC1849_2539 [Escherichia coli EC1849]
gi|408277618|gb|EKI97405.1| hypothetical protein ECEC1850_2773 [Escherichia coli EC1850]
gi|408279913|gb|EKI99496.1| hypothetical protein ECEC1856_2606 [Escherichia coli EC1856]
gi|408291563|gb|EKJ10160.1| hypothetical protein ECEC1862_2598 [Escherichia coli EC1862]
gi|408293903|gb|EKJ12324.1| hypothetical protein ECEC1864_2776 [Escherichia coli EC1864]
gi|408298329|gb|EKJ16275.1| hypothetical protein ECEC1865_2712 [Escherichia coli EC1865]
gi|408310526|gb|EKJ27567.1| hypothetical protein ECEC1868_2787 [Escherichia coli EC1868]
gi|408311377|gb|EKJ28387.1| hypothetical protein ECEC1866_2454 [Escherichia coli EC1866]
gi|408323615|gb|EKJ39577.1| hypothetical protein ECEC1869_2783 [Escherichia coli EC1869]
gi|408328039|gb|EKJ43656.1| hypothetical protein ECNE098_2886 [Escherichia coli NE098]
gi|408328994|gb|EKJ44533.1| hypothetical protein ECEC1870_2528 [Escherichia coli EC1870]
gi|408339111|gb|EKJ53731.1| hypothetical protein ECFRIK523_2731 [Escherichia coli FRIK523]
gi|408348769|gb|EKJ62850.1| hypothetical protein EC01304_2838 [Escherichia coli 0.1304]
gi|408551744|gb|EKK28982.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
5.2239]
gi|408552586|gb|EKK29758.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
3.4870]
gi|408553156|gb|EKK30287.1| hypothetical protein EC60172_2880 [Escherichia coli 6.0172]
gi|408574361|gb|EKK50138.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
8.0586]
gi|408582478|gb|EKK57693.1| hypothetical protein EC100833_2799 [Escherichia coli 10.0833]
gi|408583144|gb|EKK58322.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
8.2524]
gi|408594726|gb|EKK69007.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
10.0869]
gi|408598290|gb|EKK72249.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
88.0221]
gi|408602326|gb|EKK76047.1| hypothetical protein EC80416_2327 [Escherichia coli 8.0416]
gi|408613680|gb|EKK86967.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
10.0821]
gi|421935631|gb|EKT93319.1| hypothetical protein CFSAN001629_23766 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421942590|gb|EKT99917.1| hypothetical protein CFSAN001632_09937 [Escherichia coli O111:H8
str. CFSAN001632]
gi|421945462|gb|EKU02678.1| hypothetical protein CFSAN001630_14427 [Escherichia coli O111:H11
str. CFSAN001630]
gi|427207718|gb|EKV77886.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
88.1042]
gi|427209379|gb|EKV79418.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
89.0511]
gi|427210653|gb|EKV80508.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
88.1467]
gi|427226354|gb|EKV94944.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
90.2281]
gi|427226685|gb|EKV95274.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
90.0091]
gi|427229489|gb|EKV97803.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
90.0039]
gi|427244850|gb|EKW12159.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
93.0056]
gi|427245454|gb|EKW12738.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
93.0055]
gi|427247707|gb|EKW14759.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
94.0618]
gi|427263528|gb|EKW29286.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.0943]
gi|427264108|gb|EKW29799.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.0183]
gi|427266351|gb|EKW31800.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.1288]
gi|427278618|gb|EKW43074.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0428]
gi|427282574|gb|EKW46819.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0427]
gi|427285151|gb|EKW49154.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0939]
gi|427294388|gb|EKW57573.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0932]
gi|427301406|gb|EKW64268.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0107]
gi|427301836|gb|EKW64690.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.0003]
gi|427315560|gb|EKW77552.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.1742]
gi|427317843|gb|EKW79734.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.0007]
gi|427322448|gb|EKW84081.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0672]
gi|427330181|gb|EKW91459.1| hypothetical protein EC990678_2500 [Escherichia coli 99.0678]
gi|427330577|gb|EKW91847.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0713]
gi|429255257|gb|EKY39592.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
96.0109]
gi|429257029|gb|EKY41132.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
97.0010]
gi|429346301|gb|EKY83081.1| hypothetical protein C212_01023 [Escherichia coli O104:H4 str.
11-02030]
gi|429348142|gb|EKY84913.1| hypothetical protein C213_01019 [Escherichia coli O104:H4 str.
11-02033-1]
gi|429354843|gb|EKY91539.1| hypothetical protein C214_01020 [Escherichia coli O104:H4 str.
11-02092]
gi|429363043|gb|EKY99687.1| hypothetical protein C215_01020 [Escherichia coli O104:H4 str.
11-02093]
gi|429364942|gb|EKZ01560.1| hypothetical protein C216_01020 [Escherichia coli O104:H4 str.
11-02281]
gi|429366666|gb|EKZ03268.1| hypothetical protein C217_01020 [Escherichia coli O104:H4 str.
11-02318]
gi|429377130|gb|EKZ13655.1| hypothetical protein C218_01020 [Escherichia coli O104:H4 str.
11-02913]
gi|429381641|gb|EKZ18126.1| hypothetical protein C221_01019 [Escherichia coli O104:H4 str.
11-03943]
gi|429384667|gb|EKZ21124.1| hypothetical protein C219_01019 [Escherichia coli O104:H4 str.
11-03439]
gi|429393340|gb|EKZ29736.1| hypothetical protein C220_01020 [Escherichia coli O104:H4 str.
11-04080]
gi|429394031|gb|EKZ30417.1| hypothetical protein MO3_02098 [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429407550|gb|EKZ43803.1| hypothetical protein O7C_00675 [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429408407|gb|EKZ44645.1| hypothetical protein MO5_00703 [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409853|gb|EKZ46079.1| hypothetical protein O7G_01495 [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429426541|gb|EKZ62630.1| hypothetical protein O7M_02499 [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429426947|gb|EKZ63034.1| hypothetical protein O7I_00369 [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429431511|gb|EKZ67560.1| hypothetical protein O7E_00692 [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429433912|gb|EKZ69942.1| hypothetical protein O7K_01937 [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429440873|gb|EKZ76850.1| hypothetical protein O7O_05032 [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429444451|gb|EKZ80397.1| hypothetical protein S91_00744 [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429450080|gb|EKZ85978.1| hypothetical protein S7Y_02497 [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429453941|gb|EKZ89809.1| hypothetical protein MO7_00686 [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430876020|gb|ELB99541.1| hypothetical protein WCA_02752 [Escherichia coli KTE2]
gi|430878179|gb|ELC01611.1| hypothetical protein WCC_02145 [Escherichia coli KTE4]
gi|430887360|gb|ELC10187.1| hypothetical protein WCE_01841 [Escherichia coli KTE5]
gi|430897029|gb|ELC19256.1| hypothetical protein WCO_01560 [Escherichia coli KTE11]
gi|430899307|gb|ELC21412.1| hypothetical protein WCQ_01888 [Escherichia coli KTE12]
gi|430906738|gb|ELC28243.1| hypothetical protein WCY_02593 [Escherichia coli KTE16]
gi|430908532|gb|ELC29925.1| hypothetical protein WCU_01671 [Escherichia coli KTE15]
gi|430915761|gb|ELC36839.1| hypothetical protein WEI_02576 [Escherichia coli KTE25]
gi|430920090|gb|ELC41010.1| hypothetical protein WE9_02586 [Escherichia coli KTE21]
gi|430926962|gb|ELC47549.1| hypothetical protein WEK_02315 [Escherichia coli KTE26]
gi|430929632|gb|ELC50141.1| hypothetical protein WEO_02057 [Escherichia coli KTE28]
gi|430935304|gb|ELC55626.1| hypothetical protein WG9_02557 [Escherichia coli KTE39]
gi|430944885|gb|ELC64974.1| hypothetical protein A137_02543 [Escherichia coli KTE178]
gi|430953622|gb|ELC72520.1| hypothetical protein A13K_02358 [Escherichia coli KTE187]
gi|430956643|gb|ELC75317.1| hypothetical protein A139_01689 [Escherichia coli KTE181]
gi|430964391|gb|ELC81838.1| hypothetical protein A13M_01677 [Escherichia coli KTE188]
gi|430967116|gb|ELC84478.1| hypothetical protein A13O_02096 [Escherichia coli KTE189]
gi|430972668|gb|ELC89636.1| hypothetical protein A13S_02431 [Escherichia coli KTE191]
gi|430981455|gb|ELC98183.1| hypothetical protein A13W_00826 [Escherichia coli KTE193]
gi|430982772|gb|ELC99461.1| hypothetical protein A15C_02676 [Escherichia coli KTE201]
gi|430989633|gb|ELD06087.1| hypothetical protein A15I_01787 [Escherichia coli KTE204]
gi|430994332|gb|ELD10663.1| hypothetical protein A15K_01789 [Escherichia coli KTE205]
gi|430998379|gb|ELD14620.1| hypothetical protein A15M_02042 [Escherichia coli KTE206]
gi|431005984|gb|ELD20991.1| hypothetical protein A15Q_02227 [Escherichia coli KTE208]
gi|431016018|gb|ELD29565.1| hypothetical protein A15Y_02100 [Escherichia coli KTE212]
gi|431021510|gb|ELD34833.1| hypothetical protein A171_01393 [Escherichia coli KTE213]
gi|431024466|gb|ELD37631.1| hypothetical protein A173_03082 [Escherichia coli KTE214]
gi|431029088|gb|ELD42120.1| hypothetical protein A177_02308 [Escherichia coli KTE216]
gi|431039573|gb|ELD50393.1| hypothetical protein A17E_01643 [Escherichia coli KTE220]
gi|431042694|gb|ELD53182.1| hypothetical protein A17M_01948 [Escherichia coli KTE224]
gi|431051981|gb|ELD61643.1| hypothetical protein A17U_00895 [Escherichia coli KTE228]
gi|431053066|gb|ELD62702.1| hypothetical protein A17Y_02076 [Escherichia coli KTE230]
gi|431061262|gb|ELD70581.1| hypothetical protein A193_02548 [Escherichia coli KTE234]
gi|431069945|gb|ELD78265.1| hypothetical protein A195_01644 [Escherichia coli KTE235]
gi|431074978|gb|ELD82515.1| hypothetical protein A197_01960 [Escherichia coli KTE236]
gi|431080689|gb|ELD87484.1| hypothetical protein A199_02330 [Escherichia coli KTE237]
gi|431085122|gb|ELD91245.1| hypothetical protein A1S3_02216 [Escherichia coli KTE47]
gi|431091996|gb|ELD97704.1| hypothetical protein A1S7_02591 [Escherichia coli KTE49]
gi|431100708|gb|ELE05678.1| hypothetical protein A1SE_02437 [Escherichia coli KTE53]
gi|431108604|gb|ELE12576.1| hypothetical protein A1SI_02587 [Escherichia coli KTE55]
gi|431116324|gb|ELE19772.1| hypothetical protein A1SM_03225 [Escherichia coli KTE57]
gi|431120454|gb|ELE23452.1| hypothetical protein A1SO_02471 [Escherichia coli KTE58]
gi|431128057|gb|ELE30349.1| hypothetical protein A1SS_02497 [Escherichia coli KTE60]
gi|431130709|gb|ELE32792.1| hypothetical protein A1SW_02555 [Escherichia coli KTE62]
gi|431138784|gb|ELE40596.1| hypothetical protein A1U7_02684 [Escherichia coli KTE67]
gi|431140963|gb|ELE42728.1| hypothetical protein A1U5_02224 [Escherichia coli KTE66]
gi|431149022|gb|ELE50295.1| hypothetical protein A1UG_01951 [Escherichia coli KTE72]
gi|431155070|gb|ELE55831.1| hypothetical protein A1UM_02263 [Escherichia coli KTE75]
gi|431159765|gb|ELE60309.1| hypothetical protein A1UO_01937 [Escherichia coli KTE76]
gi|431171071|gb|ELE71252.1| hypothetical protein A1UW_01976 [Escherichia coli KTE80]
gi|431180399|gb|ELE80286.1| hypothetical protein A1W5_02107 [Escherichia coli KTE86]
gi|431183513|gb|ELE83329.1| hypothetical protein A1W1_02109 [Escherichia coli KTE83]
gi|431191168|gb|ELE90553.1| hypothetical protein A1W7_02300 [Escherichia coli KTE87]
gi|431191998|gb|ELE91372.1| hypothetical protein A1WE_02051 [Escherichia coli KTE93]
gi|431201608|gb|ELF00305.1| hypothetical protein A1Y3_02832 [Escherichia coli KTE116]
gi|431211020|gb|ELF09003.1| hypothetical protein A1Y7_02482 [Escherichia coli KTE119]
gi|431221375|gb|ELF18696.1| hypothetical protein A1YW_02189 [Escherichia coli KTE143]
gi|431234808|gb|ELF30202.1| hypothetical protein A31I_02081 [Escherichia coli KTE162]
gi|431244465|gb|ELF38773.1| hypothetical protein A31M_01958 [Escherichia coli KTE169]
gi|431249563|gb|ELF43718.1| hypothetical protein WCG_04100 [Escherichia coli KTE6]
gi|431257375|gb|ELF50299.1| hypothetical protein WCI_01937 [Escherichia coli KTE8]
gi|431262797|gb|ELF54786.1| hypothetical protein WCK_02598 [Escherichia coli KTE9]
gi|431265835|gb|ELF57397.1| hypothetical protein WE1_02310 [Escherichia coli KTE17]
gi|431273557|gb|ELF64631.1| hypothetical protein WE3_02312 [Escherichia coli KTE18]
gi|431275738|gb|ELF66765.1| hypothetical protein WGK_02393 [Escherichia coli KTE45]
gi|431283250|gb|ELF74109.1| hypothetical protein WEE_02240 [Escherichia coli KTE23]
gi|431291977|gb|ELF82473.1| hypothetical protein WGG_01941 [Escherichia coli KTE43]
gi|431297251|gb|ELF86909.1| hypothetical protein WEQ_01751 [Escherichia coli KTE29]
gi|431302804|gb|ELF91983.1| hypothetical protein WEA_01578 [Escherichia coli KTE22]
gi|431308808|gb|ELF97087.1| hypothetical protein A1S1_01752 [Escherichia coli KTE46]
gi|431310981|gb|ELF99161.1| hypothetical protein A1S5_02778 [Escherichia coli KTE48]
gi|431316031|gb|ELG03930.1| hypothetical protein A1S9_03629 [Escherichia coli KTE50]
gi|431318668|gb|ELG06363.1| hypothetical protein A1SG_03038 [Escherichia coli KTE54]
gi|431326886|gb|ELG14231.1| hypothetical protein A1SQ_02396 [Escherichia coli KTE59]
gi|431329610|gb|ELG16896.1| hypothetical protein A1SY_02581 [Escherichia coli KTE63]
gi|431337396|gb|ELG24484.1| hypothetical protein A1U3_01789 [Escherichia coli KTE65]
gi|431339815|gb|ELG26869.1| hypothetical protein A1US_02284 [Escherichia coli KTE78]
gi|431343895|gb|ELG30851.1| hypothetical protein A1UU_03767 [Escherichia coli KTE79]
gi|431348994|gb|ELG35836.1| hypothetical protein A1W3_02272 [Escherichia coli KTE84]
gi|431362294|gb|ELG48872.1| hypothetical protein A1WM_00679 [Escherichia coli KTE101]
gi|431364619|gb|ELG51150.1| hypothetical protein A1Y1_01964 [Escherichia coli KTE115]
gi|431367963|gb|ELG54431.1| hypothetical protein A1Y5_02710 [Escherichia coli KTE118]
gi|431372509|gb|ELG58171.1| hypothetical protein A1YA_03975 [Escherichia coli KTE123]
gi|431375814|gb|ELG61137.1| hypothetical protein A1YM_03630 [Escherichia coli KTE135]
gi|431385217|gb|ELG69204.1| hypothetical protein A1YO_02210 [Escherichia coli KTE136]
gi|431389641|gb|ELG73352.1| hypothetical protein A1YQ_02447 [Escherichia coli KTE140]
gi|431395065|gb|ELG78578.1| hypothetical protein A1YS_02377 [Escherichia coli KTE141]
gi|431400173|gb|ELG83555.1| hypothetical protein A1YY_01675 [Escherichia coli KTE144]
gi|431410983|gb|ELG94126.1| hypothetical protein A313_00671 [Escherichia coli KTE147]
gi|431416851|gb|ELG99322.1| hypothetical protein A31C_02610 [Escherichia coli KTE158]
gi|431422593|gb|ELH04785.1| hypothetical protein A31K_03643 [Escherichia coli KTE165]
gi|431426491|gb|ELH08535.1| hypothetical protein A13U_02287 [Escherichia coli KTE192]
gi|431433328|gb|ELH15000.1| hypothetical protein A13Y_02300 [Escherichia coli KTE194]
gi|431440336|gb|ELH21665.1| hypothetical protein A13Q_02327 [Escherichia coli KTE190]
gi|431444599|gb|ELH25621.1| hypothetical protein A133_02328 [Escherichia coli KTE173]
gi|431445319|gb|ELH26246.1| hypothetical protein A135_02677 [Escherichia coli KTE175]
gi|431464128|gb|ELH44250.1| hypothetical protein A13C_00840 [Escherichia coli KTE183]
gi|431471105|gb|ELH50998.1| hypothetical protein A15G_03087 [Escherichia coli KTE203]
gi|431474841|gb|ELH54647.1| hypothetical protein A15E_02593 [Escherichia coli KTE202]
gi|431480637|gb|ELH60356.1| hypothetical protein A15S_04380 [Escherichia coli KTE209]
gi|431482720|gb|ELH62422.1| hypothetical protein A15O_02590 [Escherichia coli KTE207]
gi|431492024|gb|ELH71627.1| hypothetical protein A15W_02393 [Escherichia coli KTE211]
gi|431494951|gb|ELH74537.1| hypothetical protein A179_02643 [Escherichia coli KTE217]
gi|431500985|gb|ELH79971.1| hypothetical protein A175_01997 [Escherichia coli KTE215]
gi|431507237|gb|ELH85523.1| hypothetical protein A17A_02607 [Escherichia coli KTE218]
gi|431510117|gb|ELH88364.1| hypothetical protein A17K_02434 [Escherichia coli KTE223]
gi|431515217|gb|ELH93044.1| hypothetical protein A17S_02879 [Escherichia coli KTE227]
gi|431524343|gb|ELI01290.1| hypothetical protein A17W_00510 [Escherichia coli KTE229]
gi|431531986|gb|ELI08641.1| hypothetical protein WI5_01825 [Escherichia coli KTE104]
gi|431532888|gb|ELI09392.1| hypothetical protein WI7_01870 [Escherichia coli KTE105]
gi|431537280|gb|ELI13428.1| hypothetical protein WI9_01795 [Escherichia coli KTE106]
gi|431543463|gb|ELI18444.1| hypothetical protein WIA_01886 [Escherichia coli KTE109]
gi|431552244|gb|ELI26206.1| hypothetical protein WIE_02128 [Escherichia coli KTE113]
gi|431553594|gb|ELI27520.1| hypothetical protein WIC_02177 [Escherichia coli KTE112]
gi|431570891|gb|ELI43799.1| hypothetical protein WIM_02017 [Escherichia coli KTE124]
gi|431571767|gb|ELI44637.1| hypothetical protein WIK_02179 [Escherichia coli KTE122]
gi|431583093|gb|ELI55103.1| hypothetical protein WIO_02079 [Escherichia coli KTE125]
gi|431585840|gb|ELI57787.1| hypothetical protein WIQ_02030 [Escherichia coli KTE128]
gi|431589094|gb|ELI60313.1| hypothetical protein WIS_01928 [Escherichia coli KTE129]
gi|431597613|gb|ELI67519.1| hypothetical protein WIU_01813 [Escherichia coli KTE131]
gi|431603055|gb|ELI72482.1| hypothetical protein WIW_01870 [Escherichia coli KTE133]
gi|431607115|gb|ELI76486.1| hypothetical protein WIY_01843 [Escherichia coli KTE137]
gi|431616945|gb|ELI85968.1| hypothetical protein WK3_01886 [Escherichia coli KTE139]
gi|431620449|gb|ELI89326.1| hypothetical protein WK5_01874 [Escherichia coli KTE145]
gi|431628384|gb|ELI96760.1| hypothetical protein WK9_01943 [Escherichia coli KTE150]
gi|431629272|gb|ELI97638.1| hypothetical protein WK7_01915 [Escherichia coli KTE148]
gi|431635239|gb|ELJ03454.1| hypothetical protein WKA_01902 [Escherichia coli KTE153]
gi|431643497|gb|ELJ11189.1| hypothetical protein WKC_01825 [Escherichia coli KTE157]
gi|431646735|gb|ELJ14227.1| hypothetical protein WKE_01846 [Escherichia coli KTE160]
gi|431661791|gb|ELJ28603.1| hypothetical protein WKM_01694 [Escherichia coli KTE167]
gi|431662939|gb|ELJ29707.1| hypothetical protein WKO_01926 [Escherichia coli KTE168]
gi|431672025|gb|ELJ38298.1| hypothetical protein WKQ_02012 [Escherichia coli KTE174]
gi|431675387|gb|ELJ41532.1| hypothetical protein WKS_01858 [Escherichia coli KTE176]
gi|431678931|gb|ELJ44849.1| hypothetical protein WKU_01971 [Escherichia coli KTE177]
gi|431688727|gb|ELJ54245.1| hypothetical protein WKW_01845 [Escherichia coli KTE179]
gi|431689085|gb|ELJ54602.1| hypothetical protein WKY_01999 [Escherichia coli KTE180]
gi|431693619|gb|ELJ59031.1| hypothetical protein WGQ_01990 [Escherichia coli KTE232]
gi|431704874|gb|ELJ69499.1| hypothetical protein WGM_02151 [Escherichia coli KTE82]
gi|431706637|gb|ELJ71207.1| hypothetical protein WGS_01665 [Escherichia coli KTE88]
gi|431707894|gb|ELJ72423.1| hypothetical protein WGO_01860 [Escherichia coli KTE85]
gi|431722510|gb|ELJ86476.1| hypothetical protein WGY_02023 [Escherichia coli KTE95]
gi|431723091|gb|ELJ87053.1| hypothetical protein WGW_01969 [Escherichia coli KTE94]
gi|431730440|gb|ELJ94004.1| hypothetical protein WI1_01785 [Escherichia coli KTE97]
gi|431734946|gb|ELJ98322.1| hypothetical protein WI3_01843 [Escherichia coli KTE99]
gi|432348269|gb|ELL42720.1| hypothetical protein B185_006557 [Escherichia coli J96]
gi|441653204|emb|CCQ01667.1| FIG000859: hypothetical protein YebC [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|441714790|emb|CCQ05355.1| FIG000859: hypothetical protein YebC [Escherichia coli Nissle 1917]
gi|444540024|gb|ELV19731.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0814]
gi|444542828|gb|ELV22164.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
09BKT078844]
gi|444548710|gb|ELV27074.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0815]
gi|444559780|gb|ELV36981.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0839]
gi|444561817|gb|ELV38920.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0816]
gi|444565917|gb|ELV42760.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0848]
gi|444575358|gb|ELV51600.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1753]
gi|444579501|gb|ELV55487.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1775]
gi|444581743|gb|ELV57581.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1793]
gi|444595341|gb|ELV70445.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA11]
gi|444595521|gb|ELV70623.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
ATCC 700728]
gi|444598248|gb|ELV73184.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1805]
gi|444609168|gb|ELV83627.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA19]
gi|444609538|gb|ELV83996.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA13]
gi|444617440|gb|ELV91556.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA2]
gi|444626349|gb|ELW00145.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA47]
gi|444626730|gb|ELW00522.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA48]
gi|444631910|gb|ELW05493.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA8]
gi|444641201|gb|ELW14440.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
7.1982]
gi|444644136|gb|ELW17260.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1781]
gi|444647409|gb|ELW20383.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.1762]
gi|444656021|gb|ELW28557.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
PA35]
gi|444662836|gb|ELW35088.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
3.4880]
gi|444667645|gb|ELW39679.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
95.0083]
gi|444671031|gb|ELW42870.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
99.0670]
gi|449318752|gb|EMD08814.1| hypothetical protein C202_09046 [Escherichia coli O08]
Length = 246
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|82543703|ref|YP_407650.1| hypothetical protein SBO_1187 [Shigella boydii Sb227]
gi|417681578|ref|ZP_12330952.1| hypothetical protein SB359474_1316 [Shigella boydii 3594-74]
gi|420352029|ref|ZP_14853193.1| hypothetical protein SB444474_1126 [Shigella boydii 4444-74]
gi|119392017|sp|Q322D6.1|YEBC_SHIBS RecName: Full=Probable transcriptional regulatory protein YebC
gi|81245114|gb|ABB65822.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332096563|gb|EGJ01557.1| hypothetical protein SB359474_1316 [Shigella boydii 3594-74]
gi|391285590|gb|EIQ44168.1| hypothetical protein SB444474_1126 [Shigella boydii 4444-74]
Length = 246
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVITF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|194433920|ref|ZP_03066192.1| conserved hypothetical protein [Shigella dysenteriae 1012]
gi|194417792|gb|EDX33889.1| conserved hypothetical protein [Shigella dysenteriae 1012]
Length = 262
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 17 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 76
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 77 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 134
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 135 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 193
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE +G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 194 EMGKVRDALEASGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 253
Query: 240 IFD 242
I D
Sbjct: 254 ISD 256
>gi|297529243|ref|YP_003670518.1| hypothetical protein GC56T3_0898 [Geobacillus sp. C56-T3]
gi|297252495|gb|ADI25941.1| protein of unknown function DUF28 [Geobacillus sp. C56-T3]
Length = 246
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA + G +P +N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K E+ NY E+RYEGY G A++V C+T+N+ RT +N+R F+
Sbjct: 61 MPSENIERAIKKATGT--QEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F+ G L+ N ++ LL LA+E GAE+ + D I T
Sbjct: 119 KNGGNLGETGCVSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEE-METTDESFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K+ LE GF S+ I M P T + + K+ KL++ L+ DV++VY
Sbjct: 178 APESFETVKDELEQQGFTFASAEITMIPQTYTTLEGDDLKKMLKLIDTLEDDDDVQEVYY 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|193069908|ref|ZP_03050857.1| conserved hypothetical protein [Escherichia coli E110019]
gi|192956808|gb|EDV87262.1| conserved hypothetical protein [Escherichia coli E110019]
Length = 246
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY +G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPSGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|449327929|gb|AGE94230.1| hypothetical protein [Citrobacter amalonaticus Y19]
Length = 247
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F+ ++T+++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISFVKG-DEDTIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVTMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|254367572|ref|ZP_04983596.1| hypothetical protein FTHG_00834 [Francisella tularensis subsp.
holarctica 257]
gi|134253386|gb|EBA52480.1| hypothetical protein FTHG_00834 [Francisella tularensis subsp.
holarctica 257]
Length = 221
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+++RE+ VA G + D N +LR AI AL N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKLIREITVAARLGGGDKDANPRLRAAIATALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI K +E+ N EVRYEGY G AIIVDC+T+NR RTV +R+ F
Sbjct: 61 MSKDTIERAIVKGAGG--DESANVEEVRYEGYGPGGVAIIVDCMTDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV +MF G + F P ++ L+++ALE GAED + +D I + T P
Sbjct: 119 KSGGNLGTDGSVAYMFTKRGIISFAPGVDEDALMEVALEAGAEDIITHEDGSIDVYTDPH 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYT 206
F +I+ L GF +E++ + T
Sbjct: 179 DFSDIQEVLIDEGFNSENAEVTFDAET 205
>gi|90411661|ref|ZP_01219671.1| hypothetical protein P3TCK_16399 [Photobacterium profundum 3TCK]
gi|90327551|gb|EAS43904.1| hypothetical protein P3TCK_16399 [Photobacterium profundum 3TCK]
Length = 247
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSK+ANIK +K D+KRGKI T+++RE+ VA + G + N +LR A++KAL N
Sbjct: 1 MAGHSKFANIKHRKAAQDSKRGKIFTKLIREIVVATKDGGPEAENNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ ++ V YEGY G A++V+C+T+NR RTVS +RN F+
Sbjct: 61 MTRDTINRAVKRGAGGDGEADLET--VIYEGYGPAGTAVMVECMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + ++ +++ ALE GAED + D I + T+PS
Sbjct: 119 KSGGNLGTDGSVNYLFDKKGVISYAAGLDEDVMMEAALESGAEDIETNDDGSIDVYTTPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF A ++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGSVKDALDAAGFDAANAEVTLVPSTKADLDLETAPKLLRLIDALEDLDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ITD 241
>gi|398799344|ref|ZP_10558635.1| DNA-binding regulatory protein, YebC/PmpR family [Pantoea sp. GM01]
gi|398098760|gb|EJL89040.1| DNA-binding regulatory protein, YebC/PmpR family [Pantoea sp. GM01]
Length = 247
Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G+A++++C+++NR RTV +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGSAVMIECLSDNRNRTVGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F P ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISFAPGQDEDAVMEAALEAGAEDVVAYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 EMGAVRDALEAGGLKADSAEVSMIPSTKAEMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|22219064|pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 63
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 64 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 121
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 122 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 180
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 181 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 240
Query: 240 IFD 242
I D
Sbjct: 241 ISD 243
>gi|304436500|ref|ZP_07396474.1| glucose-1-phosphate adenylyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370546|gb|EFM24197.1| glucose-1-phosphate adenylyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 242
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 150/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGADPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY EV YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATEGSNYEEVIYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL ++G V +MFK + +T ++ LL+L LE GAED + +D+ I+
Sbjct: 119 KYGGNLGQDGCVSWMFKKKAVFVVERDTFDDEDALLELVLEAGAED-MRSEDDVFEIVAE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + I+ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY+N
Sbjct: 178 PDAYDAIETVLGEKGIETASAEVTMVPDTTVHLVDKDAEKMQTLIDALEDNDDVQNVYSN 237
>gi|283785602|ref|YP_003365467.1| hypothetical protein ROD_19051 [Citrobacter rodentium ICC168]
gi|282949056|emb|CBG88659.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 247
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EQGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 DMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|259908217|ref|YP_002648573.1| hypothetical protein EpC_15620 [Erwinia pyrifoliae Ep1/96]
gi|387871061|ref|YP_005802434.1| hypothetical protein EPYR_01683 [Erwinia pyrifoliae DSM 12163]
gi|224963839|emb|CAX55341.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
gi|283478147|emb|CAY74063.1| UPF0082 protein ECA2494 [Erwinia pyrifoliae DSM 12163]
Length = 247
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F+
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTRKGVISYAPGLNEDTVMDAALEAGADDVVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K+ L+ G +AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NMGAVKDVLDAAGLQAESAEVTMIPSTKADMDMETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|58581282|ref|YP_200298.1| hypothetical protein XOO1659 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84623200|ref|YP_450572.1| hypothetical protein XOO_1543 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|67462015|sp|Q5H2A8.1|Y1659_XANOR RecName: Full=Probable transcriptional regulatory protein XOO1659
gi|119391273|sp|Q2P579.1|Y1543_XANOM RecName: Full=Probable transcriptional regulatory protein XOO1543
gi|58425876|gb|AAW74913.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367140|dbj|BAE68298.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 242
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 153/235 (65%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L AN+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGIDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+++++L G + + IV R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVRDALAAAGLEPAHAEIVFRADNDIAVDGDTAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|420100047|ref|ZP_14611244.1| hypothetical protein ECO9455_10129, partial [Escherichia coli
O111:H11 str. CVM9455]
gi|394421923|gb|EJE95349.1| hypothetical protein ECO9455_10129, partial [Escherichia coli
O111:H11 str. CVM9455]
Length = 293
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR AI+KAL N
Sbjct: 48 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNN 107
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 108 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 165
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 166 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 224
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 225 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 284
Query: 240 IFD 242
I D
Sbjct: 285 ISD 287
>gi|16129817|ref|NP_416378.1| conserved protein, UPF0082 family [Escherichia coli str. K-12
substr. MG1655]
gi|30063274|ref|NP_837445.1| hypothetical protein S1940 [Shigella flexneri 2a str. 2457T]
gi|74311806|ref|YP_310225.1| hypothetical protein SSON_1277 [Shigella sonnei Ss046]
gi|170019791|ref|YP_001724745.1| hypothetical protein EcolC_1768 [Escherichia coli ATCC 8739]
gi|170081520|ref|YP_001730840.1| hypothetical protein ECDH10B_2005 [Escherichia coli str. K-12
substr. DH10B]
gi|191168081|ref|ZP_03029880.1| conserved hypothetical protein [Escherichia coli B7A]
gi|193066058|ref|ZP_03047115.1| conserved hypothetical protein [Escherichia coli E22]
gi|194429661|ref|ZP_03062179.1| conserved hypothetical protein [Escherichia coli B171]
gi|194439052|ref|ZP_03071135.1| conserved hypothetical protein [Escherichia coli 101-1]
gi|209919231|ref|YP_002293315.1| hypothetical protein ECSE_2040 [Escherichia coli SE11]
gi|238901079|ref|YP_002926875.1| hypothetical protein BWG_1678 [Escherichia coli BW2952]
gi|260844207|ref|YP_003221985.1| hypothetical protein ECO103_2054 [Escherichia coli O103:H2 str.
12009]
gi|293446251|ref|ZP_06662673.1| hypothetical protein ECCG_00399 [Escherichia coli B088]
gi|300816244|ref|ZP_07096466.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
107-1]
gi|300904748|ref|ZP_07122578.1| hypothetical protein HMPREF9536_02819 [Escherichia coli MS 84-1]
gi|300917559|ref|ZP_07134214.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
115-1]
gi|300951486|ref|ZP_07165321.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
116-1]
gi|300956623|ref|ZP_07168902.1| hypothetical protein HMPREF9547_02440 [Escherichia coli MS 175-1]
gi|301029314|ref|ZP_07192411.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
196-1]
gi|301304453|ref|ZP_07210565.1| hypothetical protein HMPREF9347_03058 [Escherichia coli MS 124-1]
gi|301645620|ref|ZP_07245549.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
146-1]
gi|309794245|ref|ZP_07688669.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
145-7]
gi|312969905|ref|ZP_07784088.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331642478|ref|ZP_08343613.1| protein YebC [Escherichia coli H736]
gi|331653273|ref|ZP_08354278.1| protein YebC [Escherichia coli M718]
gi|332278966|ref|ZP_08391379.1| conserved hypothetical protein [Shigella sp. D9]
gi|383177926|ref|YP_005455931.1| hypothetical protein SSON53_06875 [Shigella sonnei 53G]
gi|384543493|ref|YP_005727556.1| hypothetical protein SFxv_2098 [Shigella flexneri 2002017]
gi|386280926|ref|ZP_10058590.1| UPF0082 protein yebC [Escherichia sp. 4_1_40B]
gi|386595324|ref|YP_006091724.1| hypothetical protein [Escherichia coli DH1]
gi|386614421|ref|YP_006134087.1| hypothetical protein UMNK88_2336 [Escherichia coli UMNK88]
gi|386704410|ref|YP_006168257.1| hypothetical protein P12B_c1221 [Escherichia coli P12b]
gi|387621584|ref|YP_006129211.1| hypothetical protein ECDH1ME8569_1810 [Escherichia coli DH1]
gi|388477938|ref|YP_490126.1| hypothetical protein Y75_p1840 [Escherichia coli str. K-12 substr.
W3110]
gi|414575551|ref|ZP_11432752.1| hypothetical protein SS323385_1393 [Shigella sonnei 3233-85]
gi|415775303|ref|ZP_11487219.1| conserved hypothetical protein [Escherichia coli 3431]
gi|415805137|ref|ZP_11501346.1| hypothetical protein ECE128010_5109 [Escherichia coli E128010]
gi|415809639|ref|ZP_11502368.1| hypothetical protein ECLT68_0636 [Escherichia coli LT-68]
gi|415850893|ref|ZP_11527688.1| hypothetical protein SS53G_4475 [Shigella sonnei 53G]
gi|415854082|ref|ZP_11529940.1| hypothetical protein SF2457T_0885 [Shigella flexneri 2a str. 2457T]
gi|415861201|ref|ZP_11534867.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS 85-1]
gi|415873657|ref|ZP_11540877.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS
79-10]
gi|417121579|ref|ZP_11971007.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0246]
gi|417149903|ref|ZP_11989821.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2264]
gi|417167957|ref|ZP_12000579.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
99.0741]
gi|417172918|ref|ZP_12002951.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2608]
gi|417187576|ref|ZP_12012242.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
93.0624]
gi|417231894|ref|ZP_12033292.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0959]
gi|417252245|ref|ZP_12044008.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0967]
gi|417261712|ref|ZP_12049200.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.3916]
gi|417271453|ref|ZP_12058802.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.4168]
gi|417276960|ref|ZP_12064286.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2303]
gi|417291615|ref|ZP_12078896.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
B41]
gi|417608453|ref|ZP_12258959.1| hypothetical protein ECSTECDG1313_2845 [Escherichia coli
STEC_DG131-3]
gi|417613286|ref|ZP_12263747.1| hypothetical protein ECSTECEH250_2339 [Escherichia coli STEC_EH250]
gi|417618426|ref|ZP_12268846.1| hypothetical protein ECG581_2230 [Escherichia coli G58-1]
gi|417623658|ref|ZP_12273962.1| hypothetical protein ECSTECH18_2407 [Escherichia coli STEC_H.1.8]
gi|417634781|ref|ZP_12284995.1| hypothetical protein ECSTECS1191_2694 [Escherichia coli STEC_S1191]
gi|417639400|ref|ZP_12289550.1| hypothetical protein ECTX1999_2103 [Escherichia coli TX1999]
gi|417701853|ref|ZP_12350977.1| hypothetical protein SFK218_2088 [Shigella flexneri K-218]
gi|417707693|ref|ZP_12356736.1| hypothetical protein SFVA6_2500 [Shigella flexneri VA-6]
gi|417712749|ref|ZP_12361729.1| hypothetical protein SFK272_2476 [Shigella flexneri K-272]
gi|417717425|ref|ZP_12366341.1| hypothetical protein SFK227_2150 [Shigella flexneri K-227]
gi|417722747|ref|ZP_12371568.1| hypothetical protein SFK304_1840 [Shigella flexneri K-304]
gi|417728588|ref|ZP_12377301.1| hypothetical protein SFK671_2250 [Shigella flexneri K-671]
gi|417733685|ref|ZP_12382341.1| hypothetical protein SF274771_2229 [Shigella flexneri 2747-71]
gi|417738731|ref|ZP_12387317.1| hypothetical protein SF434370_2063 [Shigella flexneri 4343-70]
gi|417743533|ref|ZP_12392068.1| hypothetical protein SF293071_2157 [Shigella flexneri 2930-71]
gi|417828115|ref|ZP_12474676.1| hypothetical protein SFJ1713_2116 [Shigella flexneri J1713]
gi|417943539|ref|ZP_12586787.1| hypothetical protein IAE_01010 [Escherichia coli XH140A]
gi|417974963|ref|ZP_12615764.1| hypothetical protein IAM_01465 [Escherichia coli XH001]
gi|418044058|ref|ZP_12682207.1| hypothetical protein ECW26_44380 [Escherichia coli W26]
gi|418256257|ref|ZP_12880340.1| hypothetical protein SF660363_2156 [Shigella flexneri 6603-63]
gi|418264308|ref|ZP_12884832.1| hypothetical protein SSMOSELEY_1643 [Shigella sonnei str. Moseley]
gi|418303134|ref|ZP_12914928.1| hypothetical protein UMNF18_2321 [Escherichia coli UMNF18]
gi|418957767|ref|ZP_13509690.1| hypothetical protein OQE_19300 [Escherichia coli J53]
gi|419142622|ref|ZP_13687369.1| hypothetical protein ECDEC6A_2265 [Escherichia coli DEC6A]
gi|419148552|ref|ZP_13693217.1| hypothetical protein ECDEC6B_2599 [Escherichia coli DEC6B]
gi|419154058|ref|ZP_13698626.1| hypothetical protein ECDEC6C_2214 [Escherichia coli DEC6C]
gi|419170424|ref|ZP_13714314.1| hypothetical protein ECDEC7A_2076 [Escherichia coli DEC7A]
gi|419175173|ref|ZP_13719018.1| hypothetical protein ECDEC7B_2075 [Escherichia coli DEC7B]
gi|419181073|ref|ZP_13724690.1| hypothetical protein ECDEC7C_2201 [Escherichia coli DEC7C]
gi|419186510|ref|ZP_13730027.1| hypothetical protein ECDEC7D_2242 [Escherichia coli DEC7D]
gi|419191795|ref|ZP_13735255.1| hypothetical protein ECDEC7E_2072 [Escherichia coli DEC7E]
gi|419289760|ref|ZP_13831855.1| hypothetical protein ECDEC11A_2111 [Escherichia coli DEC11A]
gi|419295092|ref|ZP_13837138.1| hypothetical protein ECDEC11B_2161 [Escherichia coli DEC11B]
gi|419300411|ref|ZP_13842412.1| hypothetical protein ECDEC11C_2284 [Escherichia coli DEC11C]
gi|419306508|ref|ZP_13848412.1| hypothetical protein ECDEC11D_2072 [Escherichia coli DEC11D]
gi|419311535|ref|ZP_13853402.1| hypothetical protein ECDEC11E_2066 [Escherichia coli DEC11E]
gi|419316947|ref|ZP_13858759.1| hypothetical protein ECDEC12A_2249 [Escherichia coli DEC12A]
gi|419323100|ref|ZP_13864804.1| hypothetical protein ECDEC12B_2590 [Escherichia coli DEC12B]
gi|419329037|ref|ZP_13870651.1| hypothetical protein ECDEC12C_2240 [Escherichia coli DEC12C]
gi|419334654|ref|ZP_13876193.1| hypothetical protein ECDEC12D_2412 [Escherichia coli DEC12D]
gi|419340125|ref|ZP_13881600.1| hypothetical protein ECDEC12E_2254 [Escherichia coli DEC12E]
gi|419808960|ref|ZP_14333846.1| hypothetical protein UWO_00365 [Escherichia coli O32:H37 str. P4]
gi|419865474|ref|ZP_14387856.1| hypothetical protein ECO9340_15279 [Escherichia coli O103:H25 str.
CVM9340]
gi|419869502|ref|ZP_14391706.1| hypothetical protein ECO9450_18481 [Escherichia coli O103:H2 str.
CVM9450]
gi|419930568|ref|ZP_14448166.1| hypothetical protein EC5411_19815 [Escherichia coli 541-1]
gi|419941961|ref|ZP_14458612.1| hypothetical protein EC75_21554 [Escherichia coli 75]
gi|420320585|ref|ZP_14822421.1| hypothetical protein SF285071_2203 [Shigella flexneri 2850-71]
gi|420331419|ref|ZP_14833089.1| hypothetical protein SFK1770_2626 [Shigella flexneri K-1770]
gi|420341990|ref|ZP_14843482.1| hypothetical protein SFK404_2573 [Shigella flexneri K-404]
gi|420358073|ref|ZP_14859071.1| hypothetical protein SS322685_1877 [Shigella sonnei 3226-85]
gi|420362941|ref|ZP_14863845.1| hypothetical protein SS482266_1383 [Shigella sonnei 4822-66]
gi|420372688|ref|ZP_14872909.1| hypothetical protein SF123566_2906 [Shigella flexneri 1235-66]
gi|420385861|ref|ZP_14885219.1| hypothetical protein ECEPECA12_2222 [Escherichia coli EPECa12]
gi|420391548|ref|ZP_14890805.1| hypothetical protein ECEPECC34262_2377 [Escherichia coli EPEC
C342-62]
gi|421774224|ref|ZP_16210837.1| hypothetical protein ECAD30_03460 [Escherichia coli AD30]
gi|422354014|ref|ZP_16434761.1| hypothetical protein HMPREF9542_03343 [Escherichia coli MS 117-3]
gi|422772259|ref|ZP_16825947.1| hypothetical protein ERDG_02817 [Escherichia coli E482]
gi|422774235|ref|ZP_16827891.1| yebC [Escherichia coli H120]
gi|422790889|ref|ZP_16843593.1| hypothetical protein ERHG_01371 [Escherichia coli TA007]
gi|422816854|ref|ZP_16865068.1| UPF0082 protein yebC [Escherichia coli M919]
gi|423704669|ref|ZP_17679092.1| UPF0082 protein yebC [Escherichia coli H730]
gi|424838226|ref|ZP_18262863.1| hypothetical protein SF5M90T_1819 [Shigella flexneri 5a str. M90T]
gi|425115248|ref|ZP_18517056.1| hypothetical protein EC80566_1904 [Escherichia coli 8.0566]
gi|425119967|ref|ZP_18521673.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
8.0569]
gi|425272978|ref|ZP_18664411.1| hypothetical protein ECTW15901_2204 [Escherichia coli TW15901]
gi|425283459|ref|ZP_18674519.1| hypothetical protein ECTW00353_2069 [Escherichia coli TW00353]
gi|425288742|ref|ZP_18679610.1| hypothetical protein EC3006_2219 [Escherichia coli 3006]
gi|425305414|ref|ZP_18695156.1| hypothetical protein ECN1_1839 [Escherichia coli N1]
gi|425422579|ref|ZP_18803759.1| hypothetical protein EC01288_1935 [Escherichia coli 0.1288]
gi|427804998|ref|ZP_18972065.1| hypothetical protein BN16_24071 [Escherichia coli chi7122]
gi|427809554|ref|ZP_18976619.1| hypothetical protein BN17_22821 [Escherichia coli]
gi|432369990|ref|ZP_19613079.1| hypothetical protein WCM_03937 [Escherichia coli KTE10]
gi|432417092|ref|ZP_19659703.1| hypothetical protein WGI_02597 [Escherichia coli KTE44]
gi|432481206|ref|ZP_19723164.1| hypothetical protein A15U_02321 [Escherichia coli KTE210]
gi|432531251|ref|ZP_19768280.1| hypothetical protein A191_04499 [Escherichia coli KTE233]
gi|432564063|ref|ZP_19800653.1| hypothetical protein A1SA_02702 [Escherichia coli KTE51]
gi|432580612|ref|ZP_19817038.1| hypothetical protein A1SK_04384 [Escherichia coli KTE56]
gi|432627450|ref|ZP_19863430.1| hypothetical protein A1UQ_02288 [Escherichia coli KTE77]
gi|432637092|ref|ZP_19872968.1| hypothetical protein A1UY_02447 [Escherichia coli KTE81]
gi|432661099|ref|ZP_19896745.1| hypothetical protein A1WY_02512 [Escherichia coli KTE111]
gi|432674903|ref|ZP_19910376.1| hypothetical protein A1YU_01447 [Escherichia coli KTE142]
gi|432685652|ref|ZP_19920954.1| hypothetical protein A31A_02502 [Escherichia coli KTE156]
gi|432691804|ref|ZP_19927035.1| hypothetical protein A31G_04022 [Escherichia coli KTE161]
gi|432704622|ref|ZP_19939726.1| hypothetical protein A31Q_02491 [Escherichia coli KTE171]
gi|432737354|ref|ZP_19972120.1| hypothetical protein WGE_02599 [Escherichia coli KTE42]
gi|432805930|ref|ZP_20039868.1| hypothetical protein A1WA_01833 [Escherichia coli KTE91]
gi|432861996|ref|ZP_20086756.1| hypothetical protein A311_02488 [Escherichia coli KTE146]
gi|432882104|ref|ZP_20098184.1| hypothetical protein A317_04470 [Escherichia coli KTE154]
gi|432934524|ref|ZP_20134033.1| hypothetical protein A13E_03185 [Escherichia coli KTE184]
gi|432947733|ref|ZP_20142889.1| hypothetical protein A153_02646 [Escherichia coli KTE196]
gi|432955298|ref|ZP_20147238.1| hypothetical protein A155_02515 [Escherichia coli KTE197]
gi|433043457|ref|ZP_20230957.1| hypothetical protein WIG_01982 [Escherichia coli KTE117]
gi|433048144|ref|ZP_20235513.1| hypothetical protein WII_02084 [Escherichia coli KTE120]
gi|433092289|ref|ZP_20278563.1| hypothetical protein WK1_01922 [Escherichia coli KTE138]
gi|433130407|ref|ZP_20315852.1| hypothetical protein WKG_02139 [Escherichia coli KTE163]
gi|433135095|ref|ZP_20320449.1| hypothetical protein WKI_02029 [Escherichia coli KTE166]
gi|433193850|ref|ZP_20377849.1| hypothetical protein WGU_02164 [Escherichia coli KTE90]
gi|442590230|ref|ZP_21009012.1| FIG000859: hypothetical protein YebC [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|443617944|ref|YP_007381800.1| hypothetical protein APECO78_13135 [Escherichia coli APEC O78]
gi|450189513|ref|ZP_21890576.1| hypothetical protein A364_09695 [Escherichia coli SEPT362]
gi|450244522|ref|ZP_21900373.1| hypothetical protein C201_08464 [Escherichia coli S17]
gi|67476510|sp|P0A8A0.1|YEBC_ECOLI RecName: Full=Probable transcriptional regulatory protein YebC
gi|67476511|sp|P0A8A1.1|YEBC_SHIFL RecName: Full=Probable transcriptional regulatory protein YebC
gi|119392019|sp|Q3Z2M2.1|YEBC_SHISS RecName: Full=Probable transcriptional regulatory protein YebC
gi|42173|emb|CAA42126.1| ORF246 [Escherichia coli K-12]
gi|216652|dbj|BAA01031.1| Orf26 [Escherichia coli]
gi|1736511|dbj|BAA15675.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
W3110]
gi|1788171|gb|AAC74934.1| conserved protein, UPF0082 family [Escherichia coli str. K-12
substr. MG1655]
gi|30041526|gb|AAP17254.1| hypothetical protein S1940 [Shigella flexneri 2a str. 2457T]
gi|73855283|gb|AAZ87990.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|169754719|gb|ACA77418.1| protein of unknown function DUF28 [Escherichia coli ATCC 8739]
gi|169889355|gb|ACB03062.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
gi|190901879|gb|EDV61629.1| conserved hypothetical protein [Escherichia coli B7A]
gi|192926295|gb|EDV80932.1| conserved hypothetical protein [Escherichia coli E22]
gi|194412303|gb|EDX28607.1| conserved hypothetical protein [Escherichia coli B171]
gi|194422011|gb|EDX38015.1| conserved hypothetical protein [Escherichia coli 101-1]
gi|195182926|dbj|BAG66494.1| hypothetical protein [Escherichia coli O111:H-]
gi|209912490|dbj|BAG77564.1| conserved hypothetical protein [Escherichia coli SE11]
gi|238860331|gb|ACR62329.1| conserved protein [Escherichia coli BW2952]
gi|257759354|dbj|BAI30851.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
gi|260449013|gb|ACX39435.1| protein of unknown function DUF28 [Escherichia coli DH1]
gi|281601279|gb|ADA74263.1| hypothetical protein SFxv_2098 [Shigella flexneri 2002017]
gi|291323081|gb|EFE62509.1| hypothetical protein ECCG_00399 [Escherichia coli B088]
gi|299877740|gb|EFI85951.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
196-1]
gi|300316605|gb|EFJ66389.1| hypothetical protein HMPREF9547_02440 [Escherichia coli MS 175-1]
gi|300403332|gb|EFJ86870.1| hypothetical protein HMPREF9536_02819 [Escherichia coli MS 84-1]
gi|300415213|gb|EFJ98523.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
115-1]
gi|300449236|gb|EFK12856.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
116-1]
gi|300530934|gb|EFK51996.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
107-1]
gi|300840304|gb|EFK68064.1| hypothetical protein HMPREF9347_03058 [Escherichia coli MS 124-1]
gi|301076152|gb|EFK90958.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
146-1]
gi|308122150|gb|EFO59412.1| conserved hypothetical protein TIGR01033 [Escherichia coli MS
145-7]
gi|310338190|gb|EFQ03279.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|313650640|gb|EFS15042.1| hypothetical protein SF2457T_0885 [Shigella flexneri 2a str. 2457T]
gi|315136507|dbj|BAJ43666.1| hypothetical protein ECDH1ME8569_1810 [Escherichia coli DH1]
gi|315257304|gb|EFU37272.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS 85-1]
gi|315617913|gb|EFU98511.1| conserved hypothetical protein [Escherichia coli 3431]
gi|323158651|gb|EFZ44665.1| hypothetical protein ECE128010_5109 [Escherichia coli E128010]
gi|323165012|gb|EFZ50802.1| hypothetical protein SS53G_4475 [Shigella sonnei 53G]
gi|323174757|gb|EFZ60373.1| hypothetical protein ECLT68_0636 [Escherichia coli LT-68]
gi|323940468|gb|EGB36659.1| hypothetical protein ERDG_02817 [Escherichia coli E482]
gi|323948250|gb|EGB44238.1| yebC [Escherichia coli H120]
gi|323972628|gb|EGB67831.1| hypothetical protein ERHG_01371 [Escherichia coli TA007]
gi|324018007|gb|EGB87226.1| hypothetical protein HMPREF9542_03343 [Escherichia coli MS 117-3]
gi|331039276|gb|EGI11496.1| protein YebC [Escherichia coli H736]
gi|331049371|gb|EGI21443.1| protein YebC [Escherichia coli M718]
gi|332101318|gb|EGJ04664.1| conserved hypothetical protein [Shigella sp. D9]
gi|332343590|gb|AEE56924.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332756765|gb|EGJ87112.1| hypothetical protein SF434370_2063 [Shigella flexneri 4343-70]
gi|332757658|gb|EGJ87991.1| hypothetical protein SF274771_2229 [Shigella flexneri 2747-71]
gi|332758052|gb|EGJ88378.1| hypothetical protein SFK671_2250 [Shigella flexneri K-671]
gi|332766840|gb|EGJ97041.1| hypothetical protein SF293071_2157 [Shigella flexneri 2930-71]
gi|333003475|gb|EGK23018.1| hypothetical protein SFVA6_2500 [Shigella flexneri VA-6]
gi|333004717|gb|EGK24240.1| hypothetical protein SFK272_2476 [Shigella flexneri K-272]
gi|333004760|gb|EGK24282.1| hypothetical protein SFK218_2088 [Shigella flexneri K-218]
gi|333018438|gb|EGK37736.1| hypothetical protein SFK227_2150 [Shigella flexneri K-227]
gi|333018606|gb|EGK37900.1| hypothetical protein SFK304_1840 [Shigella flexneri K-304]
gi|335575439|gb|EGM61722.1| hypothetical protein SFJ1713_2116 [Shigella flexneri J1713]
gi|339415232|gb|AEJ56904.1| hypothetical protein UMNF18_2321 [Escherichia coli UMNF18]
gi|342364865|gb|EGU28964.1| hypothetical protein IAE_01010 [Escherichia coli XH140A]
gi|342930864|gb|EGU99586.1| glucose-1-phosphate adenylyl transferase [Escherichia coli MS
79-10]
gi|344195572|gb|EGV49641.1| hypothetical protein IAM_01465 [Escherichia coli XH001]
gi|345359043|gb|EGW91222.1| hypothetical protein ECSTECDG1313_2845 [Escherichia coli
STEC_DG131-3]
gi|345362797|gb|EGW94942.1| hypothetical protein ECSTECEH250_2339 [Escherichia coli STEC_EH250]
gi|345376799|gb|EGX08732.1| hypothetical protein ECG581_2230 [Escherichia coli G58-1]
gi|345379176|gb|EGX11091.1| hypothetical protein ECSTECH18_2407 [Escherichia coli STEC_H.1.8]
gi|345388272|gb|EGX18083.1| hypothetical protein ECSTECS1191_2694 [Escherichia coli STEC_S1191]
gi|345393798|gb|EGX23567.1| hypothetical protein ECTX1999_2103 [Escherichia coli TX1999]
gi|359332342|dbj|BAL38789.1| conserved protein [Escherichia coli str. K-12 substr. MDS42]
gi|377994802|gb|EHV57926.1| hypothetical protein ECDEC6B_2599 [Escherichia coli DEC6B]
gi|377996931|gb|EHV60039.1| hypothetical protein ECDEC6A_2265 [Escherichia coli DEC6A]
gi|377998425|gb|EHV61517.1| hypothetical protein ECDEC6C_2214 [Escherichia coli DEC6C]
gi|378016655|gb|EHV79535.1| hypothetical protein ECDEC7A_2076 [Escherichia coli DEC7A]
gi|378024441|gb|EHV87095.1| hypothetical protein ECDEC7C_2201 [Escherichia coli DEC7C]
gi|378030214|gb|EHV92818.1| hypothetical protein ECDEC7D_2242 [Escherichia coli DEC7D]
gi|378034704|gb|EHV97268.1| hypothetical protein ECDEC7B_2075 [Escherichia coli DEC7B]
gi|378039738|gb|EHW02226.1| hypothetical protein ECDEC7E_2072 [Escherichia coli DEC7E]
gi|378131691|gb|EHW93048.1| hypothetical protein ECDEC11A_2111 [Escherichia coli DEC11A]
gi|378142179|gb|EHX03381.1| hypothetical protein ECDEC11B_2161 [Escherichia coli DEC11B]
gi|378149943|gb|EHX11063.1| hypothetical protein ECDEC11D_2072 [Escherichia coli DEC11D]
gi|378151790|gb|EHX12897.1| hypothetical protein ECDEC11C_2284 [Escherichia coli DEC11C]
gi|378158636|gb|EHX19654.1| hypothetical protein ECDEC11E_2066 [Escherichia coli DEC11E]
gi|378167206|gb|EHX28121.1| hypothetical protein ECDEC12B_2590 [Escherichia coli DEC12B]
gi|378170932|gb|EHX31807.1| hypothetical protein ECDEC12A_2249 [Escherichia coli DEC12A]
gi|378172021|gb|EHX32881.1| hypothetical protein ECDEC12C_2240 [Escherichia coli DEC12C]
gi|378184016|gb|EHX44654.1| hypothetical protein ECDEC12D_2412 [Escherichia coli DEC12D]
gi|378190047|gb|EHX50633.1| hypothetical protein ECDEC12E_2254 [Escherichia coli DEC12E]
gi|383102578|gb|AFG40087.1| hypothetical protein P12B_c1221 [Escherichia coli P12b]
gi|383467278|gb|EID62299.1| hypothetical protein SF5M90T_1819 [Shigella flexneri 5a str. M90T]
gi|383473009|gb|EID65039.1| hypothetical protein ECW26_44380 [Escherichia coli W26]
gi|384379376|gb|EIE37244.1| hypothetical protein OQE_19300 [Escherichia coli J53]
gi|385157890|gb|EIF19880.1| hypothetical protein UWO_00365 [Escherichia coli O32:H37 str. P4]
gi|385539525|gb|EIF86357.1| UPF0082 protein yebC [Escherichia coli M919]
gi|385705312|gb|EIG42377.1| UPF0082 protein yebC [Escherichia coli H730]
gi|386122109|gb|EIG70722.1| UPF0082 protein yebC [Escherichia sp. 4_1_40B]
gi|386148431|gb|EIG94868.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
97.0246]
gi|386160915|gb|EIH22720.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
1.2264]
gi|386170983|gb|EIH43031.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
99.0741]
gi|386180616|gb|EIH58090.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2608]
gi|386181233|gb|EIH63996.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
93.0624]
gi|386204893|gb|EII09404.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
5.0959]
gi|386217820|gb|EII34305.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
4.0967]
gi|386224839|gb|EII47174.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.3916]
gi|386235153|gb|EII67129.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
2.4168]
gi|386240449|gb|EII77373.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
3.2303]
gi|386253937|gb|EIJ03627.1| DNA-binding regulatory protein, YebC/PmpR family [Escherichia coli
B41]
gi|388337240|gb|EIL03742.1| hypothetical protein ECO9340_15279 [Escherichia coli O103:H25 str.
CVM9340]
gi|388342707|gb|EIL08741.1| hypothetical protein ECO9450_18481 [Escherichia coli O103:H2 str.
CVM9450]
gi|388399109|gb|EIL59913.1| hypothetical protein EC75_21554 [Escherichia coli 75]
gi|388399960|gb|EIL60734.1| hypothetical protein EC5411_19815 [Escherichia coli 541-1]
gi|391249879|gb|EIQ09103.1| hypothetical protein SF285071_2203 [Shigella flexneri 2850-71]
gi|391253356|gb|EIQ12532.1| hypothetical protein SFK1770_2626 [Shigella flexneri K-1770]
gi|391268797|gb|EIQ27718.1| hypothetical protein SFK404_2573 [Shigella flexneri K-404]
gi|391285988|gb|EIQ44553.1| hypothetical protein SS322685_1877 [Shigella sonnei 3226-85]
gi|391287076|gb|EIQ45608.1| hypothetical protein SS323385_1393 [Shigella sonnei 3233-85]
gi|391295408|gb|EIQ53567.1| hypothetical protein SS482266_1383 [Shigella sonnei 4822-66]
gi|391305909|gb|EIQ63677.1| hypothetical protein ECEPECA12_2222 [Escherichia coli EPECa12]
gi|391313313|gb|EIQ70906.1| hypothetical protein ECEPECC34262_2377 [Escherichia coli EPEC
C342-62]
gi|391318000|gb|EIQ75227.1| hypothetical protein SF123566_2906 [Shigella flexneri 1235-66]
gi|397898136|gb|EJL14529.1| hypothetical protein SF660363_2156 [Shigella flexneri 6603-63]
gi|397902121|gb|EJL18451.1| hypothetical protein SSMOSELEY_1643 [Shigella sonnei str. Moseley]
gi|408194237|gb|EKI19725.1| hypothetical protein ECTW15901_2204 [Escherichia coli TW15901]
gi|408202747|gb|EKI27809.1| hypothetical protein ECTW00353_2069 [Escherichia coli TW00353]
gi|408214910|gb|EKI39318.1| hypothetical protein EC3006_2219 [Escherichia coli 3006]
gi|408229396|gb|EKI52828.1| hypothetical protein ECN1_1839 [Escherichia coli N1]
gi|408344817|gb|EKJ59166.1| hypothetical protein EC01288_1935 [Escherichia coli 0.1288]
gi|408460854|gb|EKJ84632.1| hypothetical protein ECAD30_03460 [Escherichia coli AD30]
gi|408569666|gb|EKK45653.1| hypothetical protein EC80566_1904 [Escherichia coli 8.0566]
gi|408570908|gb|EKK46864.1| DNA-binding regulatory , YebC/PmpR family protein [Escherichia coli
8.0569]
gi|412963180|emb|CCK47099.1| hypothetical protein BN16_24071 [Escherichia coli chi7122]
gi|412969733|emb|CCJ44372.1| hypothetical protein BN17_22821 [Escherichia coli]
gi|430885617|gb|ELC08488.1| hypothetical protein WCM_03937 [Escherichia coli KTE10]
gi|430940454|gb|ELC60637.1| hypothetical protein WGI_02597 [Escherichia coli KTE44]
gi|431007863|gb|ELD22674.1| hypothetical protein A15U_02321 [Escherichia coli KTE210]
gi|431054479|gb|ELD64049.1| hypothetical protein A191_04499 [Escherichia coli KTE233]
gi|431094655|gb|ELE00286.1| hypothetical protein A1SA_02702 [Escherichia coli KTE51]
gi|431105443|gb|ELE09778.1| hypothetical protein A1SK_04384 [Escherichia coli KTE56]
gi|431164143|gb|ELE64544.1| hypothetical protein A1UQ_02288 [Escherichia coli KTE77]
gi|431172081|gb|ELE72232.1| hypothetical protein A1UY_02447 [Escherichia coli KTE81]
gi|431200215|gb|ELE98941.1| hypothetical protein A1WY_02512 [Escherichia coli KTE111]
gi|431215404|gb|ELF13100.1| hypothetical protein A1YU_01447 [Escherichia coli KTE142]
gi|431222687|gb|ELF19963.1| hypothetical protein A31A_02502 [Escherichia coli KTE156]
gi|431227279|gb|ELF24416.1| hypothetical protein A31G_04022 [Escherichia coli KTE161]
gi|431243928|gb|ELF38256.1| hypothetical protein A31Q_02491 [Escherichia coli KTE171]
gi|431284454|gb|ELF75312.1| hypothetical protein WGE_02599 [Escherichia coli KTE42]
gi|431355051|gb|ELG41765.1| hypothetical protein A1WA_01833 [Escherichia coli KTE91]
gi|431405743|gb|ELG88976.1| hypothetical protein A311_02488 [Escherichia coli KTE146]
gi|431411610|gb|ELG94721.1| hypothetical protein A317_04470 [Escherichia coli KTE154]
gi|431453505|gb|ELH33912.1| hypothetical protein A13E_03185 [Escherichia coli KTE184]
gi|431457711|gb|ELH38048.1| hypothetical protein A153_02646 [Escherichia coli KTE196]
gi|431467969|gb|ELH47975.1| hypothetical protein A155_02515 [Escherichia coli KTE197]
gi|431556428|gb|ELI30207.1| hypothetical protein WIG_01982 [Escherichia coli KTE117]
gi|431566250|gb|ELI39289.1| hypothetical protein WII_02084 [Escherichia coli KTE120]
gi|431610835|gb|ELI80119.1| hypothetical protein WK1_01922 [Escherichia coli KTE138]
gi|431647455|gb|ELJ14939.1| hypothetical protein WKG_02139 [Escherichia coli KTE163]
gi|431657958|gb|ELJ24920.1| hypothetical protein WKI_02029 [Escherichia coli KTE166]
gi|431717152|gb|ELJ81254.1| hypothetical protein WGU_02164 [Escherichia coli KTE90]
gi|441609511|emb|CCP94925.1| FIG000859: hypothetical protein YebC [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|443422452|gb|AGC87356.1| hypothetical protein APECO78_13135 [Escherichia coli APEC O78]
gi|449321207|gb|EMD11222.1| hypothetical protein C201_08464 [Escherichia coli S17]
gi|449321456|gb|EMD11468.1| hypothetical protein A364_09695 [Escherichia coli SEPT362]
Length = 246
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|146329317|ref|YP_001210063.1| hypothetical protein DNO_1179 [Dichelobacter nodosus VCS1703A]
gi|166228903|sp|A5EXG2.1|Y1179_DICNV RecName: Full=Probable transcriptional regulatory protein DNO_1179
gi|146232787|gb|ABQ13765.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 244
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI TR++REL VA G + + N +LRLA+ KA N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTRLIRELTVAARHGGSDINANPRLRLAVSKAQAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K + RAI++ + + + EVR+EGY +G AIIVDC+T+N RTV +R+ F+
Sbjct: 61 MTKETMERAIKRGAGEL--DGVQMEEVRFEGYGPSGVAIIVDCLTDNNNRTVGEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV F FK G L F ++ L++ AL GAED D D I+T+P
Sbjct: 119 KCGGNLGTSGSVAFQFKEQGVLFFENVDDEDALMEAALNAGAEDIEFD-DKSAEILTAPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRP--YTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++ + +L GF A+ S + +R + + +D E ++ +LL L++L DV+ V +N
Sbjct: 178 EYANVYEALVQAGFTADESEVTLRAENLSAVSLEDAE--QVARLLEMLEELDDVQSVVSN 235
Query: 238 A 238
A
Sbjct: 236 A 236
>gi|417629040|ref|ZP_12279280.1| hypothetical protein ECSTECMHI813_1956 [Escherichia coli
STEC_MHI813]
gi|345374254|gb|EGX06207.1| hypothetical protein ECSTECMHI813_1956 [Escherichia coli
STEC_MHI813]
Length = 246
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEEAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|401565398|ref|ZP_10806236.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC6]
gi|400187147|gb|EJO21343.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
FOBRC6]
Length = 242
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 151/242 (62%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY EV YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATEGSNYEEVLYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL ++G V +MFK + +F+ + ++ LL++ LE GAED + D+ II
Sbjct: 119 KYGGNLGQDGCVAWMFKK--KAVFIVEREAFDDEDALLEIVLEAGAEDMRAE-DDVFEII 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
P F I+ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY
Sbjct: 176 AEPEAFEAIETVLGEKGIETASAEVTMVPDTTVHLADKDAEKMQTLIDALEDNDDVQNVY 235
Query: 236 TN 237
+N
Sbjct: 236 SN 237
>gi|187731444|ref|YP_001879758.1| hypothetical protein SbBS512_E1108 [Shigella boydii CDC 3083-94]
gi|416270948|ref|ZP_11642877.1| hypothetical protein SDB_03147 [Shigella dysenteriae CDC 74-1112]
gi|416295984|ref|ZP_11651288.1| hypothetical protein SGF_01709 [Shigella flexneri CDC 796-83]
gi|420325706|ref|ZP_14827467.1| hypothetical protein SFCCH060_2029 [Shigella flexneri CCH060]
gi|420336336|ref|ZP_14837923.1| hypothetical protein SFK315_2082 [Shigella flexneri K-315]
gi|420379517|ref|ZP_14878997.1| hypothetical protein SD22575_1385 [Shigella dysenteriae 225-75]
gi|421682685|ref|ZP_16122493.1| hypothetical protein SF148580_2034 [Shigella flexneri 1485-80]
gi|187428436|gb|ACD07710.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
gi|320174357|gb|EFW49506.1| hypothetical protein SDB_03147 [Shigella dysenteriae CDC 74-1112]
gi|320186109|gb|EFW60853.1| hypothetical protein SGF_01709 [Shigella flexneri CDC 796-83]
gi|391252502|gb|EIQ11697.1| hypothetical protein SFCCH060_2029 [Shigella flexneri CCH060]
gi|391262589|gb|EIQ21608.1| hypothetical protein SFK315_2082 [Shigella flexneri K-315]
gi|391304334|gb|EIQ62148.1| hypothetical protein SD22575_1385 [Shigella dysenteriae 225-75]
gi|404340344|gb|EJZ66768.1| hypothetical protein SF148580_2034 [Shigella flexneri 1485-80]
Length = 246
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|392960879|ref|ZP_10326344.1| UPF0082 protein yeeN [Pelosinus fermentans DSM 17108]
gi|421054363|ref|ZP_15517331.1| protein of unknown function DUF28 [Pelosinus fermentans B4]
gi|421059737|ref|ZP_15522300.1| UPF0082 protein yeeN [Pelosinus fermentans B3]
gi|421068786|ref|ZP_15530027.1| UPF0082 protein yeeN [Pelosinus fermentans A12]
gi|392439152|gb|EIW16886.1| UPF0082 protein yeeN [Pelosinus fermentans A12]
gi|392440721|gb|EIW18381.1| protein of unknown function DUF28 [Pelosinus fermentans B4]
gi|392454776|gb|EIW31598.1| UPF0082 protein yeeN [Pelosinus fermentans DSM 17108]
gi|392458432|gb|EIW34967.1| UPF0082 protein yeeN [Pelosinus fermentans B3]
Length = 245
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 149/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DA RGK+ T+I REL VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKMDALRGKVTTKIGRELTVAARMGGADPTGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK ++ + NY E+ YEGY G A++V+ +T+NR RT +++R++F+
Sbjct: 61 IPKDNIQRAIQKGLGSL--DGSNYEELVYEGYGPAGVAVMVEVMTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GNL + G V +MF G + + + L+ L+LE GA+DF ++ DN+ I
Sbjct: 119 KYSGNLGESGCVSWMFDKKGLFIIEKMATIDEEELMMLSLEAGADDFKVE-DNEFEITVE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F + LE G K + I M P T + +A ++ KL++ L++ D+++VY N
Sbjct: 178 PDHFYSFQEVLEKNGIKTSVAEITMIPQTTVALAGDDAARMMKLMDALEEHDDIQEVYAN 237
>gi|262041980|ref|ZP_06015162.1| YebC like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259040678|gb|EEW41767.1| YebC like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 246
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED +I D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVIYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|451936314|ref|YP_007460168.1| hypothetical protein of the DUF28 family [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777237|gb|AGF48212.1| hypothetical protein of the DUF28 family [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 243
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 157/245 (64%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D KRGK+ T+I+RE+ VA G+ ++N +LR A+ KA AN
Sbjct: 1 MAGHSKWANIQHRKNRQDEKRGKLWTKIIREITVAARSGDTDINSNFQLRAALGKASAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI +A+Q+++ E+ Y E+ Y GY + G+A +V +T+N+++T S IR+ F
Sbjct: 61 IPKDNINKALQRSS----KESDEYEEINYGGYGIEGSAFVVKSLTDNKIKTASEIRHAFT 116
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KN GNL + GSV F+F+ CG+ +F + + ++ + +ALE GAEDF + I +
Sbjct: 117 KNSGNLEQYGSVSFLFRSCGKFIFSTVSSKEEENIFKIALEYGAEDFASLDNKTIEVTCL 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P ++I++ N+ + +SS I++ P + + IK++KL+ +L+ L DV+ VYTN
Sbjct: 177 PEQYIKLCNAFDQAKVIIKSSDIIIEPLIKVKLNHEKYIKIEKLILDLENLDDVQSVYTN 236
Query: 238 ALIFD 242
A++ D
Sbjct: 237 AVLTD 241
>gi|421074149|ref|ZP_15535190.1| UPF0082 protein yeeN [Pelosinus fermentans JBW45]
gi|392527816|gb|EIW50901.1| UPF0082 protein yeeN [Pelosinus fermentans JBW45]
Length = 245
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 149/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DA RGK+ T+I REL VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKMDALRGKVTTKIGRELTVAARMGGADPTGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK + ++ NY E+ YEGY G A++V+ +T+NR RT +++R++F+
Sbjct: 61 IPKDNIQRAIQKGLGS--SDGSNYEELVYEGYGPAGVAVMVEVMTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GNL + G V +MF G + + + L+ L+LE GA+DF ++ DN+ I
Sbjct: 119 KYSGNLGESGCVSWMFDKKGLFIIEKVATIDEEELMMLSLEAGADDFKVE-DNEFEITVE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F + LE G K + I M P T + +A ++ KL++ L++ DV++VY N
Sbjct: 178 PDHFYSFQEVLEKNGIKTSVAEITMIPQTTVALAADDATRMMKLMDALEEHDDVQEVYAN 237
>gi|254428271|ref|ZP_05041978.1| conserved hypothetical protein TIGR01033 [Alcanivorax sp. DG881]
gi|196194440|gb|EDX89399.1| conserved hypothetical protein TIGR01033 [Alcanivorax sp. DG881]
Length = 248
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 145/240 (60%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNN-PDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++REL VA G P+ N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGGEPNDNPRLRAAIDKALGQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ + N++ E+ YEGY G A++V+ +T+N RTV+ +R+ F+
Sbjct: 61 MTRDTIDRAVKRGAGGDDDGNMD--EITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV F+F G++ F + L+++ALE GAED D+ + T+P
Sbjct: 119 KFAGNLGTSGSVAFLFTKRGEIFFESGVDEEKLMEVALEAGAEDVEEVGDDGFVVTTTPD 178
Query: 180 K-FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
K F E+ ++L G + + + M P T A +QK+++ L+ L DV+ VYTNA
Sbjct: 179 KSFGEVVDALREAGLEFAEAEVTMHPSTEAEMDADTAETVQKMIDMLEDLDDVQNVYTNA 238
>gi|16760849|ref|NP_456466.1| hypothetical protein STY2107 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765241|ref|NP_460856.1| hypothetical protein STM1899 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29141459|ref|NP_804801.1| hypothetical protein t0978 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56413182|ref|YP_150257.1| hypothetical protein SPA0970 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161613545|ref|YP_001587510.1| hypothetical protein SPAB_01265 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552465|ref|ZP_02346218.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167994200|ref|ZP_02575292.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168234039|ref|ZP_02659097.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238529|ref|ZP_02663587.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168259826|ref|ZP_02681799.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168462569|ref|ZP_02696500.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168820723|ref|ZP_02832723.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194444208|ref|YP_002041164.1| hypothetical protein SNSL254_A2058 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194469640|ref|ZP_03075624.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194736427|ref|YP_002114934.1| hypothetical protein SeSA_A2053 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197250988|ref|YP_002146123.1| hypothetical protein SeAg_B1224 [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197264424|ref|ZP_03164498.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197362108|ref|YP_002141745.1| hypothetical protein SSPA0904 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198244624|ref|YP_002215186.1| hypothetical protein SeD_A1348 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390301|ref|ZP_03216912.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205352395|ref|YP_002226196.1| hypothetical protein SG1153 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856580|ref|YP_002243231.1| hypothetical protein SEN1104 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213426400|ref|ZP_03359150.1| hypothetical protein SentesTyphi_12659 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649295|ref|ZP_03379348.1| hypothetical protein SentesTy_19640 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855275|ref|ZP_03383515.1| hypothetical protein SentesT_14892 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|238912041|ref|ZP_04655878.1| hypothetical protein SentesTe_13046 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|374980923|ref|ZP_09722253.1| hypothetical protein SEE_03001 [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375000964|ref|ZP_09725304.1| hypothetical protein SEENIN0B_01267 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375118667|ref|ZP_09763834.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|375123197|ref|ZP_09768361.1| hypothetical protein SG9_1181 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378445290|ref|YP_005232922.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378450504|ref|YP_005237863.1| hypothetical protein STM14_2310 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378699771|ref|YP_005181728.1| hypothetical protein SL1344_1834 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378955462|ref|YP_005212949.1| hypothetical protein SPUL_1783 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378959135|ref|YP_005216621.1| hypothetical protein STBHUCCB_10490 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|378984465|ref|YP_005247620.1| hypothetical protein STMDT12_C19240 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378989245|ref|YP_005252409.1| hypothetical protein STMUK_1879 [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379701084|ref|YP_005242812.1| protein YebC [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383496578|ref|YP_005397267.1| hypothetical protein UMN798_2003 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|409249655|ref|YP_006885477.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|416504812|ref|ZP_11733394.1| hypothetical protein SEEM031_07744 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416512313|ref|ZP_11737702.1| hypothetical protein SEEM710_18471 [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416527974|ref|ZP_11743622.1| hypothetical protein SEEM010_17083 [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416535146|ref|ZP_11747510.1| hypothetical protein SEEM030_21723 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416550547|ref|ZP_11756039.1| hypothetical protein SEEM29N_07787 [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416562474|ref|ZP_11762174.1| hypothetical protein SEEM42N_03960 [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416570723|ref|ZP_11766218.1| hypothetical protein SEEM41H_18022 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|417325734|ref|ZP_12111618.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417333081|ref|ZP_12116756.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|417341163|ref|ZP_12122308.1| putative Integrase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417348460|ref|ZP_12127402.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417364732|ref|ZP_12137578.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417382889|ref|ZP_12148725.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417390355|ref|ZP_12153863.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417414875|ref|ZP_12158680.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417457582|ref|ZP_12163841.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417473884|ref|ZP_12169165.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417510172|ref|ZP_12175155.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|417517787|ref|ZP_12180298.1| hypothetical protein LTSEUGA_1858 [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417538359|ref|ZP_12190972.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|418513317|ref|ZP_13079548.1| hypothetical protein SEEPO729_02459 [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418760794|ref|ZP_13316947.1| hypothetical protein SEEN185_08684 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418764809|ref|ZP_13320902.1| hypothetical protein SEEN199_18917 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418772438|ref|ZP_13328442.1| hypothetical protein SEEN539_04764 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418775626|ref|ZP_13331584.1| hypothetical protein SEEN953_09107 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418778109|ref|ZP_13334022.1| hypothetical protein SEEN188_08183 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783232|ref|ZP_13339080.1| hypothetical protein SEEN559_00670 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418794716|ref|ZP_13350434.1| hypothetical protein SEEN449_21365 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418796951|ref|ZP_13352642.1| hypothetical protein SEEN567_18160 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418800795|ref|ZP_13356443.1| hypothetical protein SEEN202_05769 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418809452|ref|ZP_13365004.1| hypothetical protein SEEN550_19952 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418813605|ref|ZP_13369126.1| hypothetical protein SEEN513_08642 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418814872|ref|ZP_13370380.1| hypothetical protein SEEN538_10068 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418822659|ref|ZP_13378070.1| hypothetical protein SEEN425_14077 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418824909|ref|ZP_13380241.1| hypothetical protein SEEN462_23456 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418833676|ref|ZP_13388595.1| hypothetical protein SEEN486_22397 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836674|ref|ZP_13391558.1| hypothetical protein SEEN543_04328 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418840553|ref|ZP_13395382.1| hypothetical protein SEEN554_18484 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418844998|ref|ZP_13399784.1| hypothetical protein SEEN443_19112 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418850587|ref|ZP_13405303.1| hypothetical protein SEEN978_17271 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418852289|ref|ZP_13406991.1| hypothetical protein SEEN593_02665 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859050|ref|ZP_13413659.1| hypothetical protein SEEN470_03746 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418863480|ref|ZP_13418018.1| hypothetical protein SEEN536_21350 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418868140|ref|ZP_13422583.1| hypothetical protein SEEN176_21439 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419789369|ref|ZP_14315049.1| hypothetical protein SEENLE01_21315 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794385|ref|ZP_14319999.1| hypothetical protein SEENLE15_17274 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421358625|ref|ZP_15808922.1| hypothetical protein SEEE3139_11265 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421362595|ref|ZP_15812847.1| hypothetical protein SEEE0166_08212 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421367795|ref|ZP_15817988.1| hypothetical protein SEEE0631_11441 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370537|ref|ZP_15820702.1| hypothetical protein SEEE0424_02520 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421378025|ref|ZP_15828114.1| hypothetical protein SEEE3076_17461 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382634|ref|ZP_15832680.1| hypothetical protein SEEE4917_17767 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421387638|ref|ZP_15837637.1| hypothetical protein SEEE6622_20163 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421391741|ref|ZP_15841707.1| hypothetical protein SEEE6670_18111 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395055|ref|ZP_15844994.1| hypothetical protein SEEE6426_12087 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421401319|ref|ZP_15851195.1| hypothetical protein SEEE6437_21413 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421403079|ref|ZP_15852933.1| hypothetical protein SEEE7246_07476 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421410446|ref|ZP_15860227.1| hypothetical protein SEEE7250_21909 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421412711|ref|ZP_15862465.1| hypothetical protein SEEE1427_10446 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421416704|ref|ZP_15866423.1| hypothetical protein SEEE2659_07891 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421421698|ref|ZP_15871366.1| hypothetical protein SEEE1757_10319 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421425126|ref|ZP_15874762.1| hypothetical protein SEEE5101_04866 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421431994|ref|ZP_15881571.1| hypothetical protein SEEE8B1_16776 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421436590|ref|ZP_15886117.1| hypothetical protein SEEE5518_16632 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421441348|ref|ZP_15890818.1| hypothetical protein SEEE1618_17864 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421446715|ref|ZP_15896127.1| hypothetical protein SEEE3079_21804 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421447824|ref|ZP_15897220.1| hypothetical protein SEEE6482_04655 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421884123|ref|ZP_16315339.1| hypothetical protein SS209_01289 [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422026096|ref|ZP_16372505.1| hypothetical protein B571_09600 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422031126|ref|ZP_16377305.1| hypothetical protein B572_09681 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427550332|ref|ZP_18927812.1| hypothetical protein B576_09683 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427566444|ref|ZP_18932527.1| hypothetical protein B577_09109 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427586540|ref|ZP_18937316.1| hypothetical protein B573_09090 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427609893|ref|ZP_18942181.1| hypothetical protein B574_09381 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427633751|ref|ZP_18947076.1| hypothetical protein B575_09684 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427656139|ref|ZP_18951841.1| hypothetical protein B578_09349 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427661286|ref|ZP_18956753.1| hypothetical protein B579_09989 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427668918|ref|ZP_18961554.1| hypothetical protein B580_09692 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427767159|ref|ZP_18966726.1| hypothetical protein B581_11397 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436609935|ref|ZP_20513766.1| hypothetical protein SEE22704_10363 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436730369|ref|ZP_20519284.1| hypothetical protein SEE30663_14305 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436797512|ref|ZP_20523258.1| hypothetical protein SEECHS44_08206 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436811420|ref|ZP_20530300.1| hypothetical protein SEEE1882_20947 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436815791|ref|ZP_20533342.1| hypothetical protein SEEE1884_13468 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436838938|ref|ZP_20537258.1| hypothetical protein SEEE1594_10439 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436851385|ref|ZP_20541984.1| hypothetical protein SEEE1566_11483 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436858149|ref|ZP_20546669.1| hypothetical protein SEEE1580_12575 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865324|ref|ZP_20551291.1| hypothetical protein SEEE1543_13370 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436875503|ref|ZP_20557410.1| hypothetical protein SEEE1441_21831 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436883374|ref|ZP_20561803.1| hypothetical protein SEEE1810_21449 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436887765|ref|ZP_20564094.1| hypothetical protein SEEE1558_10104 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896444|ref|ZP_20569200.1| hypothetical protein SEEE1018_13027 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436906423|ref|ZP_20575269.1| hypothetical protein SEEE1010_21201 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436911628|ref|ZP_20577457.1| hypothetical protein SEEE1729_09580 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436921103|ref|ZP_20583574.1| hypothetical protein SEEE0895_17694 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436930513|ref|ZP_20588738.1| hypothetical protein SEEE0899_20916 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436935580|ref|ZP_20591020.1| hypothetical protein SEEE1457_09621 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436942769|ref|ZP_20595715.1| hypothetical protein SEEE1747_10787 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436951738|ref|ZP_20600793.1| hypothetical protein SEEE0968_13619 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436964553|ref|ZP_20606189.1| hypothetical protein SEEE1444_18046 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436971470|ref|ZP_20609863.1| hypothetical protein SEEE1445_13816 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985540|ref|ZP_20615060.1| hypothetical protein SEEE1559_17547 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436991493|ref|ZP_20617504.1| hypothetical protein SEEE1565_06970 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437012294|ref|ZP_20624807.1| hypothetical protein SEEE1808_21463 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437020736|ref|ZP_20627547.1| hypothetical protein SEEE1811_12324 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437029972|ref|ZP_20631154.1| hypothetical protein SEEE0956_07716 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437042389|ref|ZP_20635980.1| hypothetical protein SEEE1455_09251 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437052446|ref|ZP_20641869.1| hypothetical protein SEEE1575_16471 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437058100|ref|ZP_20644947.1| hypothetical protein SEEE1725_09414 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437067393|ref|ZP_20650313.1| hypothetical protein SEEE1745_13748 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437075791|ref|ZP_20654154.1| hypothetical protein SEEE1791_10302 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437086646|ref|ZP_20660655.1| hypothetical protein SEEE1795_20682 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437095378|ref|ZP_20664482.1| hypothetical protein SEEE6709_17372 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437100414|ref|ZP_20665901.1| hypothetical protein SEEE9058_01527 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437125995|ref|ZP_20674264.1| hypothetical protein SEEE0816_21337 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437134513|ref|ZP_20678937.1| hypothetical protein SEEE0819_22019 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437139756|ref|ZP_20682020.1| hypothetical protein SEEE3072_14746 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437147104|ref|ZP_20686656.1| hypothetical protein SEEE3089_15336 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437155395|ref|ZP_20691614.1| hypothetical protein SEEE9163_17581 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437158111|ref|ZP_20693053.1| hypothetical protein SEEE151_01955 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437171689|ref|ZP_20700793.1| hypothetical protein SEEEN202_18632 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437177338|ref|ZP_20703818.1| hypothetical protein SEEE3991_11281 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437187566|ref|ZP_20710047.1| hypothetical protein SEEE3618_20333 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437210670|ref|ZP_20712782.1| hypothetical protein SEEE1831_11447 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437261156|ref|ZP_20718226.1| hypothetical protein SEEE2490_12569 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437265756|ref|ZP_20720571.1| hypothetical protein SEEEL909_01803 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437281984|ref|ZP_20728985.1| hypothetical protein SEEEL913_21676 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437286579|ref|ZP_20730233.1| hypothetical protein SEEE4941_05348 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437308429|ref|ZP_20735470.1| hypothetical protein SEEE7015_09152 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437328678|ref|ZP_20740973.1| hypothetical protein SEEE7927_14147 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437344039|ref|ZP_20746053.1| hypothetical protein SEEECHS4_17129 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437372407|ref|ZP_20749434.1| hypothetical protein SEEE2558_13174 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437431647|ref|ZP_20756113.1| hypothetical protein SEEE2217_22834 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437435417|ref|ZP_20756503.1| hypothetical protein SEEE4018_01603 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437462593|ref|ZP_20762744.1| hypothetical protein SEEE6211_10384 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437478522|ref|ZP_20767535.1| hypothetical protein SEEE4441_11879 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437489710|ref|ZP_20770494.1| hypothetical protein SEEE4647_04025 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437506347|ref|ZP_20775630.1| hypothetical protein SEEE9845_07566 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437530052|ref|ZP_20780489.1| hypothetical protein SEEE9317_09361 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437553328|ref|ZP_20783970.1| hypothetical protein SEEE0116_04020 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437575214|ref|ZP_20790010.1| hypothetical protein SEEE1117_11634 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437592028|ref|ZP_20795006.1| hypothetical protein SEEE1392_14464 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437601479|ref|ZP_20797723.1| hypothetical protein SEEE0268_05137 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437617250|ref|ZP_20802886.1| hypothetical protein SEEE0316_08405 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437631566|ref|ZP_20806414.1| hypothetical protein SEEE0436_03382 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437657774|ref|ZP_20811209.1| hypothetical protein SEEE1319_04113 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437678304|ref|ZP_20817663.1| hypothetical protein SEEE4481_14340 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437688257|ref|ZP_20819691.1| hypothetical protein SEEE6297_00982 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437712663|ref|ZP_20827138.1| hypothetical protein SEEE4220_16233 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437719609|ref|ZP_20828673.1| hypothetical protein SEEE1616_00405 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437770880|ref|ZP_20835565.1| hypothetical protein SEEE2651_12987 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437802866|ref|ZP_20838459.1| hypothetical protein SEEE3944_02853 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437837293|ref|ZP_20845728.1| hypothetical protein SEEERB17_008743 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|438061761|ref|ZP_20856734.1| hypothetical protein SEEE5646_22958 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438090078|ref|ZP_20860380.1| hypothetical protein SEEE2625_14351 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438101192|ref|ZP_20864143.1| hypothetical protein SEEE1976_10455 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438112452|ref|ZP_20869049.1| hypothetical protein SEEE3407_12588 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438133148|ref|ZP_20873941.1| hypothetical protein SEEP9120_11019 [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440764835|ref|ZP_20943859.1| hypothetical protein F434_17766 [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440768254|ref|ZP_20947227.1| hypothetical protein F514_11414 [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440774703|ref|ZP_20953590.1| hypothetical protein F515_19958 [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445137926|ref|ZP_21383779.1| hypothetical protein SEEG9184_016956 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445148172|ref|ZP_21388682.1| hypothetical protein SEEDSL_008912 [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445150070|ref|ZP_21389531.1| hypothetical protein SEEDHWS_013959 [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445167834|ref|ZP_21394664.1| hypothetical protein SEE8A_015743 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445196733|ref|ZP_21400623.1| hypothetical protein SE20037_13610 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445221494|ref|ZP_21403185.1| hypothetical protein SEE10_006346 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445241961|ref|ZP_21407767.1| hypothetical protein SEE436_007763 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445338552|ref|ZP_21416125.1| hypothetical protein SEE18569_011281 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445349189|ref|ZP_21419968.1| hypothetical protein SEE13_007837 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445362295|ref|ZP_21424136.1| hypothetical protein SEE23_017403 [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|54040167|sp|P67180.1|YEBC_SALTI RecName: Full=Probable transcriptional regulatory protein YebC
gi|54042650|sp|P67179.1|YEBC_SALTY RecName: Full=Probable transcriptional regulatory protein YebC
gi|67461916|sp|Q5PMZ4.1|YEBC_SALPA RecName: Full=Probable transcriptional regulatory protein YebC
gi|25318108|pir||AG0743 conserved hypothetical protein STY2107 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16420435|gb|AAL20815.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503146|emb|CAD05650.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137086|gb|AAO68650.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56127439|gb|AAV76945.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161362909|gb|ABX66677.1| hypothetical protein SPAB_01265 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402871|gb|ACF63093.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194456004|gb|EDX44843.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194711929|gb|ACF91150.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633896|gb|EDX52248.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093585|emb|CAR59048.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197214691|gb|ACH52088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197242679|gb|EDY25299.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197288645|gb|EDY28020.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197939140|gb|ACH76473.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199602746|gb|EDZ01292.1| conserved hypothetical protein TIGR01033 [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205272176|emb|CAR37034.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322905|gb|EDZ10744.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205327899|gb|EDZ14663.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205331992|gb|EDZ18756.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205342638|gb|EDZ29402.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205350673|gb|EDZ37304.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206708383|emb|CAR32687.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261247069|emb|CBG24890.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993882|gb|ACY88767.1| hypothetical protein STM14_2310 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158419|emb|CBW17928.1| hypothetical protein SL1344_1834 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912893|dbj|BAJ36867.1| hypothetical protein STMDT12_C19240 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085483|emb|CBY95264.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321224543|gb|EFX49606.1| hypothetical protein SEE_03001 [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323130183|gb|ADX17613.1| protein YebC [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|326622934|gb|EGE29279.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|326627447|gb|EGE33790.1| hypothetical protein SG9_1181 [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332988792|gb|AEF07775.1| hypothetical protein STMUK_1879 [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353075652|gb|EHB41412.1| hypothetical protein SEENIN0B_01267 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353575158|gb|EHC37973.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353575528|gb|EHC38241.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353579766|gb|EHC41226.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353596335|gb|EHC53355.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353613505|gb|EHC65592.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353618989|gb|EHC69521.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353624321|gb|EHC73381.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353633772|gb|EHC80499.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353647105|gb|EHC90319.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353649547|gb|EHC92143.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353650857|gb|EHC93107.1| hypothetical protein LTSEUGA_1858 [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353666657|gb|EHD04395.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|357206073|gb|AET54119.1| hypothetical protein SPUL_1783 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357958225|gb|EHJ82927.1| putative Integrase [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|363554731|gb|EHL38965.1| hypothetical protein SEEM010_17083 [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363557260|gb|EHL41467.1| hypothetical protein SEEM031_07744 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363566288|gb|EHL50305.1| hypothetical protein SEEM030_21723 [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363568330|gb|EHL52313.1| hypothetical protein SEEM29N_07787 [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363569825|gb|EHL53774.1| hypothetical protein SEEM710_18471 [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363572805|gb|EHL56693.1| hypothetical protein SEEM42N_03960 [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363575176|gb|EHL59034.1| hypothetical protein SEEM41H_18022 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366082214|gb|EHN46151.1| hypothetical protein SEEPO729_02459 [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|374353007|gb|AEZ44768.1| hypothetical protein STBHUCCB_10490 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379986204|emb|CCF87612.1| hypothetical protein SS209_01289 [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380463399|gb|AFD58802.1| hypothetical protein UMN798_2003 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|392615128|gb|EIW97568.1| hypothetical protein SEENLE15_17274 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392615154|gb|EIW97593.1| hypothetical protein SEENLE01_21315 [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392732552|gb|EIZ89763.1| hypothetical protein SEEN539_04764 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741758|gb|EIZ98853.1| hypothetical protein SEEN199_18917 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392742346|gb|EIZ99436.1| hypothetical protein SEEN185_08684 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392748699|gb|EJA05685.1| hypothetical protein SEEN953_09107 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392755923|gb|EJA12822.1| hypothetical protein SEEN188_08183 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392757652|gb|EJA14538.1| hypothetical protein SEEN559_00670 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392760930|gb|EJA17761.1| hypothetical protein SEEN449_21365 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392770324|gb|EJA27052.1| hypothetical protein SEEN567_18160 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392773537|gb|EJA30233.1| hypothetical protein SEEN550_19952 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392774831|gb|EJA31526.1| hypothetical protein SEEN513_08642 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392783362|gb|EJA39987.1| hypothetical protein SEEN202_05769 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392786916|gb|EJA43464.1| hypothetical protein SEEN425_14077 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392793251|gb|EJA49695.1| hypothetical protein SEEN538_10068 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392795096|gb|EJA51479.1| hypothetical protein SEEN486_22397 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392801035|gb|EJA57265.1| hypothetical protein SEEN543_04328 [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392811043|gb|EJA67055.1| hypothetical protein SEEN554_18484 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392813807|gb|EJA69771.1| hypothetical protein SEEN443_19112 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392818437|gb|EJA74321.1| hypothetical protein SEEN978_17271 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392819054|gb|EJA74929.1| hypothetical protein SEEN462_23456 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392829505|gb|EJA85175.1| hypothetical protein SEEN593_02665 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392831289|gb|EJA86923.1| hypothetical protein SEEN470_03746 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392833348|gb|EJA88963.1| hypothetical protein SEEN536_21350 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392838046|gb|EJA93610.1| hypothetical protein SEEN176_21439 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395986315|gb|EJH95479.1| hypothetical protein SEEE0631_11441 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395987065|gb|EJH96228.1| hypothetical protein SEEE3139_11265 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395990419|gb|EJH99550.1| hypothetical protein SEEE0166_08212 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395997330|gb|EJI06371.1| hypothetical protein SEEE3076_17461 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395997742|gb|EJI06782.1| hypothetical protein SEEE4917_17767 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396006620|gb|EJI15583.1| hypothetical protein SEEE0424_02520 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396008463|gb|EJI17397.1| hypothetical protein SEEE6622_20163 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396010704|gb|EJI19616.1| hypothetical protein SEEE6670_18111 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396013792|gb|EJI22679.1| hypothetical protein SEEE6426_12087 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396021384|gb|EJI30210.1| hypothetical protein SEEE6437_21413 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396022579|gb|EJI31392.1| hypothetical protein SEEE7250_21909 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396030110|gb|EJI38845.1| hypothetical protein SEEE7246_07476 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396039799|gb|EJI48423.1| hypothetical protein SEEE1427_10446 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396041013|gb|EJI49636.1| hypothetical protein SEEE1757_10319 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396044881|gb|EJI53476.1| hypothetical protein SEEE2659_07891 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396051245|gb|EJI59763.1| hypothetical protein SEEE8B1_16776 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396052932|gb|EJI61437.1| hypothetical protein SEEE5518_16632 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396057596|gb|EJI66066.1| hypothetical protein SEEE5101_04866 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396062297|gb|EJI70710.1| hypothetical protein SEEE3079_21804 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396064951|gb|EJI73334.1| hypothetical protein SEEE1618_17864 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396074121|gb|EJI82412.1| hypothetical protein SEEE6482_04655 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|414018387|gb|EKT02040.1| hypothetical protein B571_09600 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414019175|gb|EKT02797.1| hypothetical protein B576_09683 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414021090|gb|EKT04653.1| hypothetical protein B572_09681 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414032681|gb|EKT15674.1| hypothetical protein B577_09109 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414034556|gb|EKT17482.1| hypothetical protein B573_09090 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414037615|gb|EKT20377.1| hypothetical protein B574_09381 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414047480|gb|EKT29758.1| hypothetical protein B578_09349 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414048973|gb|EKT31200.1| hypothetical protein B575_09684 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414053454|gb|EKT35450.1| hypothetical protein B579_09989 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414059685|gb|EKT41242.1| hypothetical protein B580_09692 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414065235|gb|EKT46008.1| hypothetical protein B581_11397 [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434941092|gb|ELL47590.1| hypothetical protein SEEP9120_11019 [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434960854|gb|ELL54196.1| hypothetical protein SEECHS44_08206 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964051|gb|ELL57073.1| hypothetical protein SEEE1882_20947 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434970127|gb|ELL62774.1| hypothetical protein SEE22704_10363 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434973907|gb|ELL66295.1| hypothetical protein SEEE1884_13468 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434980246|gb|ELL72167.1| hypothetical protein SEEE1594_10439 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434980688|gb|ELL72597.1| hypothetical protein SEE30663_14305 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434986687|gb|ELL78338.1| hypothetical protein SEEE1566_11483 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434990301|gb|ELL81851.1| hypothetical protein SEEE1580_12575 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434995094|gb|ELL86411.1| hypothetical protein SEEE1441_21831 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434996359|gb|ELL87675.1| hypothetical protein SEEE1543_13370 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435001819|gb|ELL92908.1| hypothetical protein SEEE1810_21449 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435009475|gb|ELM00261.1| hypothetical protein SEEE1558_10104 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435015000|gb|ELM05557.1| hypothetical protein SEEE1010_21201 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435016333|gb|ELM06859.1| hypothetical protein SEEE1018_13027 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435025873|gb|ELM16004.1| hypothetical protein SEEE1729_09580 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435027225|gb|ELM17354.1| hypothetical protein SEEE0895_17694 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435032168|gb|ELM22112.1| hypothetical protein SEEE0899_20916 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435038418|gb|ELM28199.1| hypothetical protein SEEE1457_09621 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435042968|gb|ELM32685.1| hypothetical protein SEEE1747_10787 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435048410|gb|ELM37975.1| hypothetical protein SEEE1444_18046 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435052205|gb|ELM41707.1| hypothetical protein SEEE0968_13619 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435057759|gb|ELM47128.1| hypothetical protein SEEE1445_13816 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062380|gb|ELM51562.1| hypothetical protein SEEE1559_17547 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435063614|gb|ELM52762.1| hypothetical protein SEEE1808_21463 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068070|gb|ELM57099.1| hypothetical protein SEEE1565_06970 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435079364|gb|ELM68075.1| hypothetical protein SEEE1811_12324 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083006|gb|ELM71617.1| hypothetical protein SEEE0956_07716 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435084314|gb|ELM72900.1| hypothetical protein SEEE1455_09251 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435091046|gb|ELM79447.1| hypothetical protein SEEE1575_16471 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435093913|gb|ELM82252.1| hypothetical protein SEEE1725_09414 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435096114|gb|ELM84387.1| hypothetical protein SEEE1745_13748 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435102792|gb|ELM90895.1| hypothetical protein SEEE1795_20682 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435105088|gb|ELM93125.1| hypothetical protein SEEE1791_10302 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435109755|gb|ELM97701.1| hypothetical protein SEEE6709_17372 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435117076|gb|ELN04788.1| hypothetical protein SEEE0816_21337 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435119992|gb|ELN07594.1| hypothetical protein SEEE0819_22019 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435125210|gb|ELN12658.1| hypothetical protein SEEE9058_01527 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435131161|gb|ELN18388.1| hypothetical protein SEEE3072_14746 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435134734|gb|ELN21860.1| hypothetical protein SEEE3089_15336 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435138263|gb|ELN25290.1| hypothetical protein SEEE9163_17581 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435146211|gb|ELN33005.1| hypothetical protein SEEEN202_18632 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435152773|gb|ELN39396.1| hypothetical protein SEEE151_01955 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435155018|gb|ELN41576.1| hypothetical protein SEEE3991_11281 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435156810|gb|ELN43281.1| hypothetical protein SEEE3618_20333 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435163612|gb|ELN49748.1| hypothetical protein SEEE2490_12569 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435168602|gb|ELN54434.1| hypothetical protein SEEEL913_21676 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435177120|gb|ELN62452.1| hypothetical protein SEEEL909_01803 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435184476|gb|ELN69405.1| hypothetical protein SEEE4941_05348 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435186024|gb|ELN70880.1| hypothetical protein SEEE7015_09152 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435190941|gb|ELN75513.1| hypothetical protein SEEE7927_14147 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435191093|gb|ELN75660.1| hypothetical protein SEEECHS4_17129 [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435198658|gb|ELN82815.1| hypothetical protein SEEE2217_22834 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435203592|gb|ELN87334.1| hypothetical protein SEEE1831_11447 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435206158|gb|ELN89706.1| hypothetical protein SEEE2558_13174 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435213912|gb|ELN96778.1| hypothetical protein SEEE4018_01603 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435219259|gb|ELO01622.1| hypothetical protein SEEE6211_10384 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435221341|gb|ELO03614.1| hypothetical protein SEEE4441_11879 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435231513|gb|ELO12758.1| hypothetical protein SEEE4647_04025 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435234538|gb|ELO15392.1| hypothetical protein SEEE9845_07566 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435244828|gb|ELO24936.1| hypothetical protein SEEE9317_09361 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435244975|gb|ELO25082.1| hypothetical protein SEEE0116_04020 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435245179|gb|ELO25266.1| hypothetical protein SEEE1117_11634 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435253638|gb|ELO33108.1| hypothetical protein SEEE1392_14464 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435261015|gb|ELO40177.1| hypothetical protein SEEE0316_08405 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435261249|gb|ELO40410.1| hypothetical protein SEEE0268_05137 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435270970|gb|ELO49450.1| hypothetical protein SEEE1319_04113 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435273434|gb|ELO51703.1| hypothetical protein SEEE4481_14340 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435282974|gb|ELO60572.1| hypothetical protein SEEE6297_00982 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435283366|gb|ELO60941.1| hypothetical protein SEEE0436_03382 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435287224|gb|ELO64432.1| hypothetical protein SEEE4220_16233 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435295169|gb|ELO71695.1| hypothetical protein SEEE1616_00405 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435299191|gb|ELO75359.1| hypothetical protein SEEERB17_008743 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435303601|gb|ELO79458.1| hypothetical protein SEEE3944_02853 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435306066|gb|ELO81441.1| hypothetical protein SEEE2651_12987 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435313384|gb|ELO87066.1| hypothetical protein SEEE5646_22958 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435316649|gb|ELO89762.1| hypothetical protein SEEE2625_14351 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435324764|gb|ELO96692.1| hypothetical protein SEEE1976_10455 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435330530|gb|ELP01796.1| hypothetical protein SEEE3407_12588 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436412926|gb|ELP10864.1| hypothetical protein F515_19958 [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436415518|gb|ELP13437.1| hypothetical protein F434_17766 [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436418134|gb|ELP16020.1| hypothetical protein F514_11414 [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|444843768|gb|ELX69021.1| hypothetical protein SEEDSL_008912 [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444843841|gb|ELX69088.1| hypothetical protein SEEG9184_016956 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444857281|gb|ELX82294.1| hypothetical protein SEEDHWS_013959 [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444864316|gb|ELX89118.1| hypothetical protein SE20037_13610 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444865131|gb|ELX89911.1| hypothetical protein SEE8A_015743 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444870290|gb|ELX94816.1| hypothetical protein SEE10_006346 [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444872689|gb|ELX97007.1| hypothetical protein SEE18569_011281 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444875687|gb|ELX99884.1| hypothetical protein SEE13_007837 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444884275|gb|ELY08116.1| hypothetical protein SEE23_017403 [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444890900|gb|ELY14194.1| hypothetical protein SEE436_007763 [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
Length = 246
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|56380971|dbj|BAD76879.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 252
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 146/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA + G +P +N LRL IEKA AN
Sbjct: 7 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAAN 66
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K E+ NY E+RYEGY G A++V C+T+N+ RT +N+R F
Sbjct: 67 MPSENIERAIKKATGT--QEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFA 124
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F+ G L+ N ++ LL LA+E GAE+ + D I T
Sbjct: 125 KNGGNLGETGCVSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEE-METTDESFEIYT 183
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K+ LE GF S+ I M P T + + K+ KL++ L+ DV++VY
Sbjct: 184 APESFETVKDELEQQGFTFASAEITMIPQTYTTLEGDDLKKMLKLIDTLEDDDDVQEVYH 243
Query: 237 N 237
N
Sbjct: 244 N 244
>gi|161551793|ref|YP_148447.2| hypothetical protein GK2594 [Geobacillus kaustophilus HTA426]
gi|67462017|sp|Q5KWQ7.2|Y2594_GEOKA RecName: Full=Probable transcriptional regulatory protein GK2594
Length = 246
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 146/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA + G +P +N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K E+ NY E+RYEGY G A++V C+T+N+ RT +N+R F
Sbjct: 61 MPSENIERAIKKATGT--QEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F+ G L+ N ++ LL LA+E GAE+ + D I T
Sbjct: 119 KNGGNLGETGCVSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEE-METTDESFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K+ LE GF S+ I M P T + + K+ KL++ L+ DV++VY
Sbjct: 178 APESFETVKDELEQQGFTFASAEITMIPQTYTTLEGDDLKKMLKLIDTLEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|114563354|ref|YP_750867.1| hypothetical protein Sfri_2183 [Shewanella frigidimarina NCIMB 400]
gi|114334647|gb|ABI72029.1| protein of unknown function DUF28 [Shewanella frigidimarina NCIMB
400]
Length = 250
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGK+ T+ +REL VA G++ D N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDVDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+NR RTVS +RN FN
Sbjct: 61 MTRDTVERAIKRGAGEMDGQQLETI--IYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + + +++L+D AL+ GAED + D I + T+P
Sbjct: 119 KSGGNLGTDGSVAYLFTKSGIISYDTDIDEDSLIDSALDAGAEDVITHDDGSIDVFTTPD 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++K++L+ F + + + M A K +L++ L+ DV++VY NA
Sbjct: 179 AFGKVKDALDSASFGSVHAEVTMVASLKAELDADTAEKFLRLIDILEDHDDVQEVYHNAE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|170769424|ref|ZP_02903877.1| conserved hypothetical protein [Escherichia albertii TW07627]
gi|170121748|gb|EDS90679.1| conserved hypothetical protein [Escherichia albertii TW07627]
Length = 246
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ I YEGY G AI+V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDGADMETI--IYEGYGPGGTAIMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|421071223|ref|ZP_15532344.1| UPF0082 protein yeeN [Pelosinus fermentans A11]
gi|392447341|gb|EIW24592.1| UPF0082 protein yeeN [Pelosinus fermentans A11]
Length = 253
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 149/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DA RGK+ T+I REL VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKMDALRGKVTTKIGRELTVAARMGGADPTGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK ++ + NY E+ YEGY G A++V+ +T+NR RT +++R++F+
Sbjct: 61 IPKDNIQRAIQKGLGSL--DGSNYEELVYEGYGPAGVAVMVEVMTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GNL + G V +MF G + + + L+ L+LE GA+DF ++ DN+ I
Sbjct: 119 KYSGNLGESGCVSWMFDKKGLFIIEKMATIDEEELMMLSLEAGADDFKVE-DNEFEITVE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F + LE G K + I M P T + +A ++ KL++ L++ D+++VY N
Sbjct: 178 PDHFYSFQEVLEKNGIKTSVAEITMIPQTTVALAGDDAARMMKLMDALEEHDDIQEVYAN 237
>gi|289661897|ref|ZP_06483478.1| hypothetical protein XcampvN_02054 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 242
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 153/235 (65%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L AN+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ +GSV FMFK G L F ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTDGSVAFMFKRLGVLSFAAGIDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+++++L G + E + I R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVRDALAAAGLEPEHAEITFRADNDIAVDGDTAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|387889626|ref|YP_006319924.1| hypothetical protein EBL_c23240 [Escherichia blattae DSM 4481]
gi|414593095|ref|ZP_11442743.1| hypothetical protein YeeN [Escherichia blattae NBRC 105725]
gi|386924459|gb|AFJ47413.1| hypothetical protein EBL_c23240 [Escherichia blattae DSM 4481]
gi|403195928|dbj|GAB80395.1| hypothetical protein YeeN [Escherichia blattae NBRC 105725]
Length = 248
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV ++F G + + P ++ +++ AL+ GAED + D + + T+
Sbjct: 119 KCGGNLGTGGSVAYLFSKKGVISYAPGVDEDAVMEAALDAGAEDIVNYDDGAVDVYTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++K+ L+ TG AES+ + M P T A KL ++++ L+ DV++VY N
Sbjct: 179 ELGKVKDKLDATGLVAESAEVAMIPSTKADMDAETAPKLMRMIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|292488540|ref|YP_003531424.1| hypothetical protein EAMY_2066 [Erwinia amylovora CFBP1430]
gi|292899716|ref|YP_003539085.1| hypothetical protein EAM_2006 [Erwinia amylovora ATCC 49946]
gi|428785482|ref|ZP_19002973.1| UPF0082 protein [Erwinia amylovora ACW56400]
gi|291199564|emb|CBJ46681.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291553971|emb|CBA21016.1| UPF0082 protein ECA2494 [Erwinia amylovora CFBP1430]
gi|312172683|emb|CBX80939.1| UPF0082 protein ECA2494 [Erwinia amylovora ATCC BAA-2158]
gi|426277044|gb|EKV54771.1| UPF0082 protein [Erwinia amylovora ACW56400]
Length = 247
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++T++D ALE GA+D + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTKKGVISYAPGLNEDTVMDAALEAGADDVVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K+ L+ G +AES+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NMGAVKDVLDAAGLQAESAEVTMIPATKADMDVETAPKLLRLIDMLEDCDDVQEVYHNGD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|384420262|ref|YP_005629622.1| hypothetical protein XOC_3360 [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353463175|gb|AEQ97454.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 242
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 153/235 (65%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L AN+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFASGIDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+++++L G + + I +R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVRDALAAAGLEPAHAEIALRADNDIAVDGDTAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|262278841|ref|ZP_06056626.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262259192|gb|EEY77925.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 249
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGGGDAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++++ALE GAED I +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFEDVSLEDKIMEVALEAGAEDIEISED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P T D +A ++ K+++ + L DV+ VYTN
Sbjct: 178 TFGEVQDALTAAGLKSDNAEVVMSPSTKAEITDVDQAKQILKMIDMFEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFTD 241
>gi|261418391|ref|YP_003252073.1| hypothetical protein GYMC61_0924 [Geobacillus sp. Y412MC61]
gi|319767650|ref|YP_004133151.1| hypothetical protein [Geobacillus sp. Y412MC52]
gi|261374848|gb|ACX77591.1| protein of unknown function DUF28 [Geobacillus sp. Y412MC61]
gi|317112516|gb|ADU95008.1| protein of unknown function DUF28 [Geobacillus sp. Y412MC52]
Length = 246
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA + G +P +N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKSGGGDPASNPSLRLVIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K E+ NY E+RYEGY G A++V C+T+N+ RT +N+R F+
Sbjct: 61 MPSENIERAIKKATGT--QEHTNYEEIRYEGYGPGGVAVMVVCLTDNKNRTAANVRAAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F+ G L+ N ++ LL LA+E GAE+ + D I T
Sbjct: 119 KNGGNLGETGCVSYLFERKGLLVIDREQHNVDEDELLLLAIEAGAEE-METTDESFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K+ LE GF S+ + M P T + + K+ KL++ L+ DV++VY
Sbjct: 178 APESFETVKDELEQQGFTFASAEMTMIPQTYTTLEGDDLKKMLKLIDTLEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|407697056|ref|YP_006821844.1| hypothetical protein B5T_03234 [Alcanivorax dieselolei B5]
gi|407254394|gb|AFT71501.1| UPF0082 protein [Alcanivorax dieselolei B5]
Length = 243
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ V+ G + N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITVSARMGGGEINDNPRLRAAVDKALTNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI++ +++ N E+ YEGY G A++V+ +T+N RTV+ +R+ F+
Sbjct: 61 MTRDTIDRAIKRGAGG--DDSANMEEITYEGYGKGGVAVLVETMTDNVNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV F+F G++ F P + L++LALE GAED + D ++T+P
Sbjct: 119 KFGGNLGTSGSVAFLFTKRGEIFFEPGVDEEKLMELALEAGAEDVEENDDGSFLVVTAPD 178
Query: 180 K-FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F ++ ++L+ G + + + M P T+ A + K+++ L+ L DV+ VYTNA
Sbjct: 179 RSFGDVVDALKAGGLEPADAEVTMHPSTSAEMDADTAETVGKMVDHLEDLDDVQNVYTNA 238
>gi|365158004|ref|ZP_09354247.1| UPF0082 protein [Bacillus smithii 7_3_47FAA]
gi|363622183|gb|EHL73354.1| UPF0082 protein [Bacillus smithii 7_3_47FAA]
Length = 258
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAK+GK+ ++ +E+ VA G +PD N LRL +EKA AN
Sbjct: 17 MAGHSKWKNIQRRKNAQDAKKGKVFQKLAKEIYVAAKRGLPDPDANPALRLVVEKAKAAN 76
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K N EN Y E+ YEGY G AI+V C+T+N+ RT SN+R F+
Sbjct: 77 MPNDNIKRAIEKARGNQNGEN--YEEIVYEGYGPGGVAIMVTCLTDNKNRTASNVRMAFS 134
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F G L+ N ++ +L A+E GAE+ ++ I T
Sbjct: 135 KNGGNLGETGCVSYLFDRKGYLVIEREDLNLDEDDMLLQAIEAGAEEMETSEE-AFEIYT 193
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F+E+K +LE GF ++ I M P T D ++ K++KLL+ L+ DV+++Y
Sbjct: 194 DPENFMEVKENLEKAGFAFATAEITMVPQTYTALDDEQSAKMEKLLDMLEDNDDVQEIYH 253
Query: 237 N 237
N
Sbjct: 254 N 254
>gi|161870492|ref|YP_001599664.1| hypothetical protein NMCC_1548 [Neisseria meningitidis 053442]
gi|161596045|gb|ABX73705.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 190
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 128/189 (67%), Gaps = 2/189 (1%)
Query: 52 IEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTV 111
+EKA + N+PK+N+ RAI K N+ E + YIE+RYEGY + GAA++VDC+T+N+ RTV
Sbjct: 1 MEKAAENNMPKDNVQRAIDKGTGNL--EGVEYIELRYEGYGIGGAALMVDCLTDNKTRTV 58
Query: 112 SNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNK 171
+++R+ F KNGGNL +G V F F H G L+F P ++ L++ ALE GAED + + D
Sbjct: 59 ADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGAEDVVTNDDGS 118
Query: 172 ITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDV 231
I +IT+P+ + +K++LE G+K+ + MR +A+K+QKL++ L+ L DV
Sbjct: 119 IEVITAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQKLIDALEDLDDV 178
Query: 232 KKVYTNALI 240
+ VYT+A++
Sbjct: 179 QDVYTSAVL 187
>gi|419923563|ref|ZP_14441500.1| hypothetical protein EC54115_11217 [Escherichia coli 541-15]
gi|388393356|gb|EIL54738.1| hypothetical protein EC54115_11217 [Escherichia coli 541-15]
Length = 246
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEVGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|387895346|ref|YP_006325643.1| YebC/PmpR family DNA-binding regulatory protein [Pseudomonas
fluorescens A506]
gi|423693305|ref|ZP_17667825.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens SS101]
gi|387162002|gb|AFJ57201.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens A506]
gi|387998567|gb|EIK59896.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas
fluorescens SS101]
Length = 248
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P T ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQITFAPGTDEDALMEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GF + IVM P T+ A K+ KLL+ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRNALEAAGFNGTDAEIVMLPTTSAELDLDGAQKVLKLLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|424741624|ref|ZP_18169968.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-141]
gi|422944682|gb|EKU39671.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-141]
Length = 249
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGGDAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++++ALE GAED I +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFEDVSLEDKIMEVALEAGAEDIEISED-QILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K++++ +VM P T D +A ++ K+++ + L DV+ VYTN
Sbjct: 178 TFGEVQDALTAAGLKSDNAEVVMSPSTKAEINDVDQAKQILKMIDMFEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFTD 241
>gi|62180477|ref|YP_216894.1| hypothetical protein SC1907 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224583596|ref|YP_002637394.1| hypothetical protein SPC_1814 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375114806|ref|ZP_09759976.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75482767|sp|Q57N98.1|YEBC_SALCH RecName: Full=Probable transcriptional regulatory protein YebC
gi|62128110|gb|AAX65813.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224468123|gb|ACN45953.1| hypothetical protein SPC_1814 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322714952|gb|EFZ06523.1| UPF0082 protein yebC [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 246
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEEAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|161502987|ref|YP_001570099.1| hypothetical protein SARI_01049 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|189041144|sp|A9MND4.1|YEBC_SALAR RecName: Full=Probable transcriptional regulatory protein YebC
gi|160864334|gb|ABX20957.1| hypothetical protein SARI_01049 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 247
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALENAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|254284016|ref|ZP_04958984.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR51-B]
gi|219680219|gb|EED36568.1| conserved hypothetical protein TIGR01033 [gamma proteobacterium
NOR51-B]
Length = 247
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP--DTNIKLRLAIEKALDA 58
MAGHSKWANIK +K DAKRGK+ T+++REL V+ G P + N +LR A++KAL A
Sbjct: 1 MAGHSKWANIKHRKSAQDAKRGKLFTKLIRELVVSAKQGG-PLVEDNPRLRAAVDKALGA 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAI + N +EN+ E+ YEGY+ G A++++ +T+NR RTV+ +R+ F
Sbjct: 60 NMTRDTIDRAIDRGAGNTDSENME--ELTYEGYAAGGVAVLIEAMTDNRNRTVAEVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GGNL +GSV ++F+ G + F P + L+++ALE GAED D + T
Sbjct: 118 SKRGGNLGTDGSVAYLFERKGSISFAPGVDEEQLMEVALEAGAEDIEGHDDGSFDVTTPW 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K +L +G + ++ + M P T + A + L++ L+ L DV+ VYTNA
Sbjct: 178 EDVGAVKAALVESGLEPANAEVTMIPSTTVPVDVSGAETVIGLVDMLEDLDDVQNVYTNA 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|336251041|ref|YP_004594751.1| hypothetical protein EAE_22865 [Enterobacter aerogenes KCTC 2190]
gi|444350824|ref|YP_007386968.1| FIG000859: hypothetical protein YebC [Enterobacter aerogenes
EA1509E]
gi|334737097|gb|AEG99472.1| hypothetical protein EAE_22865 [Enterobacter aerogenes KCTC 2190]
gi|443901654|emb|CCG29428.1| FIG000859: hypothetical protein YebC [Enterobacter aerogenes
EA1509E]
Length = 246
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|408417804|ref|YP_006759218.1| hypothetical protein TOL2_C03440 [Desulfobacula toluolica Tol2]
gi|405105017|emb|CCK78514.1| conserved uncharacterized protein [Desulfobacula toluolica Tol2]
Length = 247
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 152/245 (62%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK DAKRGK+ T++++E+ VA G +P+ N +LR A+ A N
Sbjct: 1 MSGHSKWSTIKHKKGATDAKRGKLFTKLIKEITVAARMGGGDPEANPRLRHALSIARSQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ RA++K + E +NY E+ YEGY G A++V+C+T+NR RT++ +R+ F
Sbjct: 61 MPKDTSERAVKKGTGEL--EGVNYEEIVYEGYGPGGVAVLVECLTDNRNRTIAEVRHAFG 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ +G V +MF G L ++ + TL+++ALE GAED + ++ N IIT P
Sbjct: 119 KAGGNVGTDGCVAWMFDKKGVLTVSKEDSDEETLMEVALEAGAED-IREETNSFDIITEP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDG-EAIKLQKLLNELKKLHDVKKVYTN 237
+ F +K +++ G K E + I M P N+ DG EA ++ K ++ L DV+K YTN
Sbjct: 178 ADFDAVKEAVDAAGIKYEMAEITMLP-QNMTKVDGKEAEQMIKFMDVLDDCDDVQKFYTN 236
Query: 238 ALIFD 242
A I D
Sbjct: 237 ADIPD 241
>gi|417372763|ref|ZP_12142973.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353604386|gb|EHC59185.1| Putative Integrase [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
Length = 265
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 20 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 79
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 80 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 137
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 138 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 196
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 197 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 256
Query: 240 IFD 242
I D
Sbjct: 257 ISD 259
>gi|383790746|ref|YP_005475320.1| YebC/PmpR family DNA-binding regulatory protein [Spirochaeta
africana DSM 8902]
gi|383107280|gb|AFG37613.1| DNA-binding regulatory protein, YebC/PmpR family [Spirochaeta
africana DSM 8902]
Length = 247
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 152/246 (61%), Gaps = 9/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA I+ KK +DAKRGKI +++++E+ VA G +PD+N +LR AI KA N
Sbjct: 1 MSGHSKWATIRHKKGALDAKRGKIFSKLIKEITVAARLGGGDPDSNPRLRTAINKARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K ++ E ++Y E+ YEGY G AI+VDC+T+N+ RT +++R+IFN
Sbjct: 61 MPKDNVERAIKKGTGDL--EGVDYTEMMYEGYGPGGVAILVDCLTDNKNRTAADVRSIFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT---LLDLALEKGAEDFLIDKDNKITIIT 176
K GGNL + G V ++F G L + +T K T +L+ ALE GA D + D I + T
Sbjct: 119 KAGGNLGESGCVSYLFNKKGILAY--STGKYTEDQILEPALEAGAADVAVSGDT-IEVET 175
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F + ++E GF E++ + + TNI K+ K+L+ L DV+ V +
Sbjct: 176 APEDFDAVVEAMEAAGFVHENAEVALVADTNIELDADGTRKVLKMLDALDDHDDVQSVSS 235
Query: 237 NALIFD 242
N I D
Sbjct: 236 NLEIPD 241
>gi|297569181|ref|YP_003690525.1| protein of unknown function DUF28 [Desulfurivibrio alkaliphilus
AHT2]
gi|296925096|gb|ADH85906.1| protein of unknown function DUF28 [Desulfurivibrio alkaliphilus
AHT2]
Length = 249
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K +DAKRGKI TR+++E+ VA G D N +LR A+ A N
Sbjct: 1 MAGHSKWANIKHRKGAMDAKRGKIFTRLIKEIMVAARLGGGDIDGNPRLRTAVAAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E + Y E+ YEGY G A++V+C+T+NR+RTV+++R +F+
Sbjct: 61 MPKDNIERAIKKGTGEL--EGVAYEEITYEGYGPGGVAVMVECMTDNRVRTVADVRFMFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL + V +MF GQ+L T ++ L++ ALE GAED +++ ++ ++T P
Sbjct: 119 KAGGNLGESNCVSWMFDRKGQILVEREATSEDELMEAALEAGAEDVVVE-ESTFQVLTEP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
F + +L+ G + I M P + D + A +L KLL+ L+ DV+ V+ N
Sbjct: 178 DDFAAVSEALQAKGIAFLEASIAMIPKNTVEVGDEQTARQLMKLLDSLEDNDDVQHVHAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDIPD 242
>gi|187932598|ref|YP_001885207.1| hypothetical protein CLL_A1008 [Clostridium botulinum B str. Eklund
17B]
gi|188589174|ref|YP_001920338.1| hypothetical protein CLH_0943 [Clostridium botulinum E3 str. Alaska
E43]
gi|251779166|ref|ZP_04822086.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226696039|sp|B2V2S0.1|Y943_CLOBA RecName: Full=Probable transcriptional regulatory protein CLH_0943
gi|226734047|sp|B2TML4.1|Y1008_CLOBB RecName: Full=Probable transcriptional regulatory protein CLL_A1008
gi|187720751|gb|ACD21972.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
gi|188499455|gb|ACD52591.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243083481|gb|EES49371.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 246
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 151/240 (62%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T+I +EL VA+ N G +P+TN +LR I KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKTDAKRGKIFTKIGKELMVAVKNGGPSPETNNRLRDIIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R+I+K + + + +NY + YEGY +G A+IV+ +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTITRSIKKASGELGS--VNYENIIYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ +G V FMF+ G+++ K ++ ++ LAL+ GAEDF D+D + T+P
Sbjct: 119 KGGGNMGTQGCVGFMFQEKGEMVIEKADKDEDEMMMLALDAGAEDFNADEDEVFVVTTTP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE G + + + M P T + +A K QK+L+ L+ DV++VY NA
Sbjct: 179 EDFGTVREALEAEGIEFLEADVKMIPDTYTAIDEADAKKFQKMLDLLEDDEDVQEVYHNA 238
>gi|423140403|ref|ZP_17128041.1| hypothetical protein SEHO0A_01920 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379052957|gb|EHY70848.1| hypothetical protein SEHO0A_01920 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 246
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISY-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|379726935|ref|YP_005319120.1| hypothetical protein MPD5_0346 [Melissococcus plutonius DAT561]
gi|376317838|dbj|BAL61625.1| hypothetical protein MPD5_0346 [Melissococcus plutonius DAT561]
Length = 240
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 149/242 (61%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++K AN
Sbjct: 1 MSGHSKWNNIQGRKNAQDAKRGKIFQKLSREIYMAAKTGGIDPAMNPSLRLAVDKGKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S+ EN Y EV YEGY G AI+V +T+NR RT +N+R F
Sbjct: 61 MPNDNIDRAIKKASSSTDGEN--YDEVTYEGYGPGGTAILVYALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ ++ +L+ LE GAED + ++ I T
Sbjct: 119 RNGGSLGETGSVAYMFDRKGYIVITREALEIDEDEMLEAVLEAGAEDMEVSEE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP F+ ++++LEM G++ + + + P T + + + KLQKL++ L+ DV +V+T
Sbjct: 178 SPEDFVSVRDALEMAGYQLAQAELTIVPQTTVTLDEEQLGKLQKLVDRLEDDDDVTQVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|157145357|ref|YP_001452676.1| hypothetical protein CKO_01097 [Citrobacter koseri ATCC BAA-895]
gi|166228559|sp|A8AFH7.1|Y1097_CITK8 RecName: Full=Probable transcriptional regulatory protein CKO_01097
gi|157082562|gb|ABV12240.1| hypothetical protein CKO_01097 [Citrobacter koseri ATCC BAA-895]
Length = 246
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EQGDEDTIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|398998842|ref|ZP_10701598.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM18]
gi|398132899|gb|EJM22149.1| DNA-binding regulatory protein, YebC/PmpR family [Pseudomonas sp.
GM18]
Length = 248
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 157/241 (65%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A++ A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALMEAAMDADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++N+LE GFK + IVM P T+ A K+ KL++ L+ L DV+ VY+NA
Sbjct: 179 GFYSVRNALEAAGFKGSDAEIVMLPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|152970925|ref|YP_001336034.1| hypothetical protein KPN_02378 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206578852|ref|YP_002237745.1| hypothetical protein KPK_1906 [Klebsiella pneumoniae 342]
gi|238895440|ref|YP_002920175.1| hypothetical protein KP1_3508 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|288934603|ref|YP_003438662.1| hypothetical protein Kvar_1727 [Klebsiella variicola At-22]
gi|290508804|ref|ZP_06548175.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|330001140|ref|ZP_08303907.1| DNA-binding regulatory protein, YebC/PmpR family [Klebsiella sp. MS
92-3]
gi|365137605|ref|ZP_09344319.1| UPF0082 protein [Klebsiella sp. 4_1_44FAA]
gi|378979558|ref|YP_005227699.1| hypothetical protein KPHS_33990 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386035516|ref|YP_005955429.1| hypothetical protein KPN2242_14870 [Klebsiella pneumoniae KCTC
2242]
gi|402780110|ref|YP_006635656.1| hypothetical protein A79E_1854 [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419973919|ref|ZP_14489341.1| hypothetical protein KPNIH1_11220 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419979311|ref|ZP_14494603.1| hypothetical protein KPNIH2_09460 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985215|ref|ZP_14500357.1| hypothetical protein KPNIH4_10099 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419990541|ref|ZP_14505512.1| hypothetical protein KPNIH5_07736 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997865|ref|ZP_14512658.1| hypothetical protein KPNIH6_15450 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420002698|ref|ZP_14517348.1| hypothetical protein KPNIH7_10755 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009338|ref|ZP_14523822.1| hypothetical protein KPNIH8_15060 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014875|ref|ZP_14529179.1| hypothetical protein KPNIH9_13679 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019988|ref|ZP_14534178.1| hypothetical protein KPNIH10_10707 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420025728|ref|ZP_14539735.1| hypothetical protein KPNIH11_10336 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420030448|ref|ZP_14544274.1| hypothetical protein KPNIH12_05109 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420036390|ref|ZP_14550050.1| hypothetical protein KPNIH14_06307 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420043075|ref|ZP_14556565.1| hypothetical protein KPNIH16_11258 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048929|ref|ZP_14562240.1| hypothetical protein KPNIH17_11713 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053868|ref|ZP_14567044.1| hypothetical protein KPNIH18_07884 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420059322|ref|ZP_14572330.1| hypothetical protein KPNIH19_06444 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420065965|ref|ZP_14578768.1| hypothetical protein KPNIH20_11153 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073575|ref|ZP_14586199.1| hypothetical protein KPNIH21_20571 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076451|ref|ZP_14588922.1| hypothetical protein KPNIH22_05837 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082018|ref|ZP_14594320.1| hypothetical protein KPNIH23_04775 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421910091|ref|ZP_16339884.1| FIG000859: hypothetical protein YebC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421919054|ref|ZP_16348564.1| FIG000859: hypothetical protein YebC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424831308|ref|ZP_18256036.1| conserved hypothetical protein TIGR01033 [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424932754|ref|ZP_18351126.1| UPF0082 protein [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425076049|ref|ZP_18479152.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425082209|ref|ZP_18485306.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425086682|ref|ZP_18489775.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425092253|ref|ZP_18495338.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|428148259|ref|ZP_18996145.1| FIG000859: hypothetical protein YebC [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428931303|ref|ZP_19004901.1| hypothetical protein MTE1_01183 [Klebsiella pneumoniae JHCK1]
gi|428937870|ref|ZP_19011004.1| hypothetical protein MTE2_00115 [Klebsiella pneumoniae VA360]
gi|449058540|ref|ZP_21736659.1| hypothetical protein G057_13742 [Klebsiella pneumoniae hvKP1]
gi|166987441|sp|A6TB33.1|Y2343_KLEP7 RecName: Full=Probable transcriptional regulatory protein
KPN78578_23430
gi|226732152|sp|B5XQ02.1|Y1906_KLEP3 RecName: Full=Probable transcriptional regulatory protein KPK_1906
gi|150955774|gb|ABR77804.1| hypothetical protein KPN_02378 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206567910|gb|ACI09686.1| conserved hypothetical protein TIGR01033 [Klebsiella pneumoniae
342]
gi|238547757|dbj|BAH64108.1| hypothetical protein KP1_3508 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|288889312|gb|ADC57630.1| protein of unknown function DUF28 [Klebsiella variicola At-22]
gi|289778198|gb|EFD86195.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|328537786|gb|EGF63985.1| DNA-binding regulatory protein, YebC/PmpR family [Klebsiella sp. MS
92-3]
gi|339762644|gb|AEJ98864.1| hypothetical protein KPN2242_14870 [Klebsiella pneumoniae KCTC
2242]
gi|363655916|gb|EHL94703.1| UPF0082 protein [Klebsiella sp. 4_1_44FAA]
gi|364518969|gb|AEW62097.1| hypothetical protein KPHS_33990 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397347166|gb|EJJ40275.1| hypothetical protein KPNIH1_11220 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397349259|gb|EJJ42354.1| hypothetical protein KPNIH2_09460 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397352263|gb|EJJ45343.1| hypothetical protein KPNIH4_10099 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397361874|gb|EJJ54531.1| hypothetical protein KPNIH6_15450 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397366554|gb|EJJ59170.1| hypothetical protein KPNIH5_07736 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397370722|gb|EJJ63286.1| hypothetical protein KPNIH7_10755 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377395|gb|EJJ69629.1| hypothetical protein KPNIH9_13679 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381791|gb|EJJ73959.1| hypothetical protein KPNIH8_15060 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397388378|gb|EJJ80356.1| hypothetical protein KPNIH10_10707 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397396665|gb|EJJ88352.1| hypothetical protein KPNIH11_10336 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397401704|gb|EJJ93323.1| hypothetical protein KPNIH12_05109 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397406712|gb|EJJ98123.1| hypothetical protein KPNIH14_06307 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397414341|gb|EJK05541.1| hypothetical protein KPNIH17_11713 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397414889|gb|EJK06081.1| hypothetical protein KPNIH16_11258 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397423605|gb|EJK14529.1| hypothetical protein KPNIH18_07884 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430772|gb|EJK21460.1| hypothetical protein KPNIH20_11153 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397435739|gb|EJK26347.1| hypothetical protein KPNIH19_06444 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397437766|gb|EJK28314.1| hypothetical protein KPNIH21_20571 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447157|gb|EJK37357.1| hypothetical protein KPNIH22_05837 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452546|gb|EJK42614.1| hypothetical protein KPNIH23_04775 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402541020|gb|AFQ65169.1| hypothetical protein YebC [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|405593553|gb|EKB66994.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405600461|gb|EKB73626.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405603406|gb|EKB76527.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405612228|gb|EKB84986.1| UPF0082 protein yebC [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|407806941|gb|EKF78192.1| UPF0082 protein [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410115986|emb|CCM82509.1| FIG000859: hypothetical protein YebC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410118693|emb|CCM91189.1| FIG000859: hypothetical protein YebC [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414708742|emb|CCN30446.1| conserved hypothetical protein TIGR01033 [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426306564|gb|EKV68664.1| hypothetical protein MTE2_00115 [Klebsiella pneumoniae VA360]
gi|426308199|gb|EKV70267.1| hypothetical protein MTE1_01183 [Klebsiella pneumoniae JHCK1]
gi|427541782|emb|CCM92283.1| FIG000859: hypothetical protein YebC [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448875343|gb|EMB10363.1| hypothetical protein G057_13742 [Klebsiella pneumoniae hvKP1]
Length = 246
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|204930987|ref|ZP_03221813.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452119902|ref|YP_007470150.1| hypothetical protein CFSAN001992_01935 [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320031|gb|EDZ05236.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451908906|gb|AGF80712.1| hypothetical protein CFSAN001992_01935 [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 246
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 YMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|110805808|ref|YP_689328.1| hypothetical protein SFV_1866 [Shigella flexneri 5 str. 8401]
gi|110615356|gb|ABF04023.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 246
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GG L +GSV ++F G ++ L ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGYLGTDGSVAYLFSKKG-VISLEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|56460196|ref|YP_155477.1| hypothetical protein IL1088 [Idiomarina loihiensis L2TR]
gi|67462022|sp|Q5QYV3.1|Y1088_IDILO RecName: Full=Probable transcriptional regulatory protein IL1088
gi|56179206|gb|AAV81928.1| Uncharacterized conserved enzyme [Idiomarina loihiensis L2TR]
Length = 249
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW+NIK +K DAKRGKI T+++RE+ V A G +P+TN +LR AI+KAL N
Sbjct: 1 MAGHSKWSNIKHRKAAQDAKRGKIFTKLIREITVSAREGGGDPETNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I A+++ + +++ +N++ E+ YEGY +G A++++C+T+NR RTVS++R+ F+
Sbjct: 61 MKRDTIDTAVKRGSGDLEGDNVD--ELTYEGYGPSGVAVLLECMTDNRNRTVSDVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + + +++ ALE GAED L + I +ITSP
Sbjct: 119 KLGGNLGTDGSVAYLFNKKGVISYSDGVTEEQVMEPALEAGAEDILAYDEGSIDVITSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ G +A ++ + P T + + A KLL+ L+ L DV+ VY NA
Sbjct: 179 NFGAVKDALDAKGLEASNAEVTQVPDTRVDLDEESARTFLKLLDALEDLDDVQNVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|39996176|ref|NP_952127.1| hypothetical protein GSU1074 [Geobacter sulfurreducens PCA]
gi|409911617|ref|YP_006890082.1| hypothetical protein KN400_1052 [Geobacter sulfurreducens KN400]
gi|49036508|sp|P62036.1|Y1074_GEOSL RecName: Full=Probable transcriptional regulatory protein GSU1074
gi|39982941|gb|AAR34400.1| protein of unknown function DUF28 [Geobacter sulfurreducens PCA]
gi|298505190|gb|ADI83913.1| protein of unknown function DUF28 [Geobacter sulfurreducens KN400]
Length = 247
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ I+ KK DAKRGK+ T++++E+ VA G +P+ N +LR A++KA N
Sbjct: 1 MSGHNKWSTIRHKKGAADAKRGKVFTKLIKEITVAAKIGGGDPNGNPRLRAAVDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E ++Y E+ YEGY G A++V+C+T+NR RTV +R+ F
Sbjct: 61 MPKDNIERAIKKGTGEL--EGVSYEEIIYEGYGPGGVAVLVECMTDNRNRTVGEVRSTFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GN+ + G V +MF G ++ + L + ALE GA+D + D++ + ++T P+
Sbjct: 119 KCNGNMGEAGCVSWMFDKKGLIVLSKDVDFEKLFETALEAGADD-VADEEEQYEVLTDPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
FI+++ +LE GF ES+ I M P T + A + KL++ L+ DV+ VY N
Sbjct: 178 AFIDVREALEKAGFPFESAEITMIPQTMVKLDGKNAENMLKLMDRLEDNDDVQNVYAN 235
>gi|237731901|ref|ZP_04562382.1| yebC [Citrobacter sp. 30_2]
gi|365107578|ref|ZP_09335905.1| UPF0082 protein yebC [Citrobacter freundii 4_7_47CFAA]
gi|420366896|ref|ZP_14867720.1| hypothetical protein SF123566_8138 [Shigella flexneri 1235-66]
gi|226907440|gb|EEH93358.1| yebC [Citrobacter sp. 30_2]
gi|363641277|gb|EHL80677.1| UPF0082 protein yebC [Citrobacter freundii 4_7_47CFAA]
gi|391323780|gb|EIQ80404.1| hypothetical protein SF123566_8138 [Shigella flexneri 1235-66]
Length = 247
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EQGDEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|365921856|ref|ZP_09446108.1| DNA-binding regulatory protein, YebC/PmpR family [Cardiobacterium
valvarum F0432]
gi|364575347|gb|EHM52747.1| DNA-binding regulatory protein, YebC/PmpR family [Cardiobacterium
valvarum F0432]
Length = 244
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 146/239 (61%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ TR++REL +A G ++ +N +LRLAI KA N
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKVFTRLIRELTIAARHGGSDAGSNPRLRLAIAKAQAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ + RAI++ + + E+RYEGY G A++VDC+T+N+ RTV ++R+ F
Sbjct: 61 MSKDTMDRAIKRGAGELGGAQME--EIRYEGYGPGGVAVMVDCLTDNKNRTVGDVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV F F G L F ++ +++AL+ GA+D ID+ N ++TSP
Sbjct: 119 KVGGNLGTSGSVAFQFTERGVLFFEKVENEDAFMEVALDAGADDLEIDE-NGAEVLTSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + ++L G+ + S + MR +A K+ +++ L++L DV+ VYTNA
Sbjct: 178 NYAAVYDALAAAGYTPDESEVTMRADNLSPVSAEDADKVMRMIERLEELDDVQSVYTNA 236
>gi|398805689|ref|ZP_10564654.1| DNA-binding regulatory protein, YebC/PmpR family [Polaromonas sp.
CF318]
gi|398090809|gb|EJL81272.1| DNA-binding regulatory protein, YebC/PmpR family [Polaromonas sp.
CF318]
Length = 213
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 141/213 (66%), Gaps = 3/213 (1%)
Query: 29 MRELRVAINFGNNP-DTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVR 87
MRE+ VA G TN +LRLA++KA AN+P N+ I K ++ E ++Y EVR
Sbjct: 1 MREIMVAARMGGGDLGTNPRLRLAVDKAKAANMPNENVKYGIAKATGSL--EGVHYEEVR 58
Query: 88 YEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNT 147
YEGY + GAAIIVDC+T+N++RTV+ +R+ F+K+GGN+ EGSV F FKHCGQ++F P
Sbjct: 59 YEGYGIGGAAIIVDCMTDNKVRTVAEVRHAFSKHGGNMGTEGSVAFQFKHCGQIIFAPGA 118
Query: 148 KKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTN 207
++ ++++ALE GA+D + +D I ++T + F ++N+LE G K E + + MR +
Sbjct: 119 SEDKIMEVALESGADDVITHEDGAIEVLTPYTGFETVRNALEAAGLKPEIAEVTMRADNS 178
Query: 208 IVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
I +A K+QKLL+ L+ L D + V+ NA++
Sbjct: 179 IELSGEDARKMQKLLDVLEDLDDTQDVFHNAVL 211
>gi|156933558|ref|YP_001437474.1| hypothetical protein ESA_01378 [Cronobacter sakazakii ATCC BAA-894]
gi|389840591|ref|YP_006342675.1| hypothetical protein ES15_1591 [Cronobacter sakazakii ES15]
gi|417789039|ref|ZP_12436713.1| hypothetical protein CSE899_00040 [Cronobacter sakazakii E899]
gi|424800014|ref|ZP_18225556.1| FIG000859: hypothetical protein [Cronobacter sakazakii 696]
gi|429087042|ref|ZP_19149774.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|429087045|ref|ZP_19149777.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|429105068|ref|ZP_19166937.1| FIG000859: hypothetical protein [Cronobacter malonaticus 681]
gi|429110732|ref|ZP_19172502.1| FIG000859: hypothetical protein [Cronobacter malonaticus 507]
gi|429115975|ref|ZP_19176893.1| FIG000859: hypothetical protein [Cronobacter sakazakii 701]
gi|429122078|ref|ZP_19182679.1| FIG000859: hypothetical protein [Cronobacter sakazakii 680]
gi|449307879|ref|YP_007440235.1| hypothetical protein CSSP291_06745 [Cronobacter sakazakii SP291]
gi|166200382|sp|A7MEB8.1|Y1378_CROS8 RecName: Full=Probable transcriptional regulatory protein ESA_01378
gi|156531812|gb|ABU76638.1| hypothetical protein ESA_01378 [Cronobacter sakazakii ATCC BAA-894]
gi|333956864|gb|EGL74493.1| hypothetical protein CSE899_00040 [Cronobacter sakazakii E899]
gi|387851067|gb|AFJ99164.1| hypothetical protein ES15_1591 [Cronobacter sakazakii ES15]
gi|423235735|emb|CCK07426.1| FIG000859: hypothetical protein [Cronobacter sakazakii 696]
gi|426291791|emb|CCJ93050.1| FIG000859: hypothetical protein [Cronobacter malonaticus 681]
gi|426311889|emb|CCJ98615.1| FIG000859: hypothetical protein [Cronobacter malonaticus 507]
gi|426319104|emb|CCK03006.1| FIG000859: hypothetical protein [Cronobacter sakazakii 701]
gi|426323403|emb|CCK13416.1| FIG000859: hypothetical protein [Cronobacter sakazakii 680]
gi|426506845|emb|CCK14886.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|426506848|emb|CCK14889.1| FIG000859: hypothetical protein [Cronobacter universalis NCTC 9529]
gi|449097912|gb|AGE85946.1| hypothetical protein CSSP291_06745 [Cronobacter sakazakii SP291]
Length = 246
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFEAG-DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|332687177|ref|YP_004456951.1| hypothetical protein MPTP_1717 [Melissococcus plutonius ATCC 35311]
gi|332371186|dbj|BAK22142.1| hypothetical protein MPTP_1717 [Melissococcus plutonius ATCC 35311]
Length = 240
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 149/242 (61%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++K AN
Sbjct: 1 MSGHSKWNNIQGRKNAQDAKRGKIFQKLSREIYMAAKTGGIDPAMNPSLRLAVDKGKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S+ EN Y EV YEGY G AI+V +T+NR RT +N+R F
Sbjct: 61 MPNDNIDRAIKKASSSTDGEN--YDEVTYEGYGPGGTAILVYALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ ++ +L+ LE GAED + ++ I T
Sbjct: 119 RNGGSLGETGSVSYMFDRKGYIVITREALEIDEDEMLEAVLEAGAEDMEVSEE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP F+ ++++LEM G++ + + + P T + + + KLQKL++ L+ DV +V+T
Sbjct: 178 SPEDFVSVRDALEMVGYQLAQAELTIVPQTTVTLDEEQLGKLQKLVDRLEDDDDVTQVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|188533629|ref|YP_001907426.1| hypothetical protein ETA_14870 [Erwinia tasmaniensis Et1/99]
gi|226734879|sp|B2VJ92.1|Y1487_ERWT9 RecName: Full=Probable transcriptional regulatory protein ETA_14870
gi|188028671|emb|CAO96533.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
Length = 247
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+++REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKVIRELVTAAKLGGGDAGSNPRLRAAMDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTMNRAIARGVGGDDDSNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++ ++D ALE GA+D + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFTKKGVISYAPGLDEDAVMDAALEAGADDVMTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K+ L+ G +A+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 NMGAVKDVLDAAGLQADSAEVTMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|339999705|ref|YP_004730588.1| hypothetical protein SBG_1734 [Salmonella bongori NCTC 12419]
gi|339513066|emb|CCC30810.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 246
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + ++ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDADMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|238898056|ref|YP_002923737.1| hypothetical protein HDEF_0869 [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259710166|sp|C4K4U6.1|Y869_HAMD5 RecName: Full=Probable transcriptional regulatory protein HDEF_0869
gi|229465815|gb|ACQ67589.1| conserved hypothetical protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 254
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 144/243 (59%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAK+GKI T+I+REL + G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKKGKIFTKIIRELVTSARLGGGDPASNPRLRTAIDKALSHN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + E+ + + YEGY G A++V C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGIGG--GEDSHMENILYEGYGPAGTAVMVSCLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV ++F G + P ++ +++LALE GA+D ++ D I I +SP
Sbjct: 119 KTGGNLGTGGSVSYLFTKKGVFSYAPGLNEDQVMELALESGADDIMVYDDGAIDIFSSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F IK +LE G A ++ I M P T I A +L +L++ L+ DV++VY N
Sbjct: 179 FFETIKKTLETAGLMASTAEISMIPSTKIDLNLENAQRLLRLIDMLEDSDDVQEVYHNGD 238
Query: 240 IFD 242
D
Sbjct: 239 FSD 241
>gi|255319220|ref|ZP_05360437.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379722|ref|ZP_06072878.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|421465280|ref|ZP_15913968.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
radioresistens WC-A-157]
gi|255303613|gb|EET82813.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262299179|gb|EEY87092.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|400204542|gb|EJO35526.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
radioresistens WC-A-157]
Length = 249
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ E+ YEGY G A++V+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EITYEGYGTGGVAVLVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + + +L++ALE GAED I +D +I +IT+P
Sbjct: 118 SKTNGNLGTSGSVAYLFTKRGEISFDDLSLEEKILEVALEAGAEDIEISED-EILVITTP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ESFGDVQDALSAAGLKSDNAEVVMSPSTKAEITDIDQAKQIMKMIDMLEDLDDVQNVYTN 236
Query: 238 ALIFD 242
D
Sbjct: 237 VEFSD 241
>gi|399887944|ref|ZP_10773821.1| hypothetical protein CarbS_05335 [Clostridium arbusti SL206]
Length = 245
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 151/240 (62%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ KK DA+RGKI T+I +E+ VA G+NPDTN KLR + KA N+
Sbjct: 1 MSGHSKWHNIQAKKGKADAQRGKIFTKIGKEIAVAAKDGSNPDTNAKLRDVVAKAKANNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P++ I RAI+K + E +NY E+ YEGY G AIIVD +T+N+ R+ SNIR IF++
Sbjct: 61 PQDTITRAIKKGAGEL--EGVNYEEIVYEGYGPAGVAIIVDVLTDNKNRSASNIRYIFDR 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFL--PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
NGGNL G V FMF+ GQ++ ++ ++ AL+ GAEDF +++ I T+
Sbjct: 119 NGGNLGANGCVSFMFQRKGQIIIEKKDGLDEDEVMMAALDAGAEDFNAEEE-IFEITTAM 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE +G++ S+ + M P T +A K+Q ++++L+ DV+ VY+NA
Sbjct: 178 EDFSSVREALEESGYEFMSAELTMIPDTLTELNMEDAEKVQDIIDKLEDDDDVQDVYSNA 237
>gi|422679998|ref|ZP_16738271.1| hypothetical protein PSYTB_06602, partial [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|331009345|gb|EGH89401.1| hypothetical protein PSYTB_06602 [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 217
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 134/211 (63%), Gaps = 3/211 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ E+ YEGY G AI+V+ +T+NR RT + +R+ F
Sbjct: 61 MTRDTIDRAVARGVGASDGDDVE--ELGYEGYGPGGVAIMVETMTDNRNRTAAAVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F GQ+ F ++ L++ A+E A+D + + D I + TS S
Sbjct: 119 KCGGNLGTDGSVAYLFDRKGQISFAAGVDEDALIEAAMEADADDVVTNDDGSIDVFTSFS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVF 210
F ++N+LE GFKA + IVM P T+ V
Sbjct: 179 GFYAVRNALEAAGFKASDAEIVMLPTTSAVL 209
>gi|299770474|ref|YP_003732500.1| hypothetical protein AOLE_11190 [Acinetobacter oleivorans DR1]
gi|298700562|gb|ADI91127.1| hypothetical protein AOLE_11190 [Acinetobacter oleivorans DR1]
Length = 249
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGGGDAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGAGGEDNDDLK--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++++ALE GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVAYLFTKRGEITFEDVSLEDKIMEIALEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTNA 238
F E++++L G K+ ++ +VM P T D +A ++ K+++ + L DV+ VYTN
Sbjct: 178 TFGEVQDALTAAGLKSNNAEVVMSPSTKAEITDVDQAKQILKMIDMFEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFTD 241
>gi|418789554|ref|ZP_13345341.1| hypothetical protein SEEN447_17108 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392760795|gb|EJA17630.1| hypothetical protein SEEN447_17108 [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
Length = 246
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE G ED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGVEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|54308306|ref|YP_129326.1| hypothetical protein PBPRA1113 [Photobacterium profundum SS9]
gi|60390916|sp|Q6LT52.1|Y1113_PHOPR RecName: Full=Probable transcriptional regulatory protein PBPRA1113
gi|46912734|emb|CAG19524.1| Conserved hypothetical protein [Photobacterium profundum SS9]
Length = 247
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSK+ANIK +K D+KRGKI T+++RE+ VA + G + N +LR A++KAL N
Sbjct: 1 MAGHSKFANIKHRKAAQDSKRGKIFTKLIREIIVATKDGGPEAENNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+++ ++ V YEGY G A++V+C+T+NR RTVS +RN F+
Sbjct: 61 MTRDTINRAVKRGAGGDGEADLET--VIYEGYGPAGTAVMVECMTDNRNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G + + ++ +++ ALE GAED + D I + T+PS
Sbjct: 119 KSGGNLGTDGSVNYLFDKKGVISYAAGLDEDVMMEAALESGAEDIETNDDGSIDVYTTPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ GF + ++ + + P T A KL +L++ L+ L DV++VY N
Sbjct: 179 DFGAVKDALDAAGFDSVNAEVTLVPSTKADLDLETAPKLLRLIDALEDLDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ITD 241
>gi|433444143|ref|ZP_20409153.1| hypothetical protein AF6_0696 [Anoxybacillus flavithermus
TNO-09.006]
gi|432001791|gb|ELK22660.1| hypothetical protein AF6_0696 [Anoxybacillus flavithermus
TNO-09.006]
Length = 245
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA G +P TN LRLAIEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKMGGGDPTTNATLRLAIEKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K N E+ +Y E+RYEGY G A++V C+T+N+ RT SN+R F+
Sbjct: 61 MPNENIERAIKKATGN--QEHTHYEEIRYEGYGPGGVAVMVICLTDNKNRTASNVRVAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F G ++ + ++ +L A+E GA++ +D+ I T
Sbjct: 119 KNGGNLGETGCVSYLFDRKGLIVIARENLHIDEDEMLLQAIEAGADEMETTEDS-FEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP +F ++KN+L GF ++ I M P T + K+ KL++ L+ DV+++Y
Sbjct: 178 SPEQFEQVKNTLAAQGFTFATAEITMIPQTYTTLTGDDLTKMLKLIDMLEDDDDVQEIYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|335041174|ref|ZP_08534290.1| UPF0082 protein yeeN [Caldalkalibacillus thermarum TA2.A1]
gi|334178972|gb|EGL81621.1| UPF0082 protein yeeN [Caldalkalibacillus thermarum TA2.A1]
Length = 241
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+ +K DAKR KI T+I +E+ A+ N G++PD N +LR+A+ KA AN
Sbjct: 1 MAGHSKWKNIQHRKERQDAKRAKIFTKISKEIYAAVKNGGSDPDQNPRLRMALHKAKQAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R I+K ++ E + Y E+ YEGY +G AI+VD +T+NR R+ + +R++FN
Sbjct: 61 MPNDNIQRTIKKATGDV--EGLTYEEIVYEGYGPHGVAIMVDVLTDNRNRSAAEVRHLFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK---KNTLLDLALEKGAEDFLIDKDNKITIIT 176
K+GGNL + G V ++F+ G ++ ++ L+ +A+E GAED ++ D+ ++T
Sbjct: 119 KHGGNLGESGCVAYLFERKGLIVVDKEAAPLGEDDLMLMAIEAGAEDLRVE-DDAYEVVT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P + +K +LE + I M P T + D + ++ KL++ L+ DV+ VYT
Sbjct: 178 APGDYETVKQALETKQIPLAETQITMLPTTTVQLNDEQKEQVMKLIDALEDSDDVQNVYT 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|50085180|ref|YP_046690.1| hypothetical protein ACIAD2052 [Acinetobacter sp. ADP1]
gi|60390898|sp|Q6FAP5.1|Y2052_ACIAD RecName: Full=Probable transcriptional regulatory protein ACIAD2052
gi|49531156|emb|CAG68868.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
Length = 249
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 152/239 (63%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DA R K+ T+ +RE+ A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANTKHRKAKQDASRAKVFTKYIREIVTAAKLGGADAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++N EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDAINRAIQRGAGGEDNDDLN--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++D+ALE GA+D I++D I +ITSP
Sbjct: 119 KTNGNLGTNGSVSYLFTKRGEISFEDVSLEDKIMDVALEAGADDIEIEEDG-ILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D E A ++ K+++ L+ L DV+ VYTN
Sbjct: 178 SFGDVQDALTAAGLKSDNAEVVMSPSTKAEITDIEQAKQIMKMIDMLEDLDDVQNVYTN 236
>gi|220932072|ref|YP_002508980.1| hypothetical protein Hore_12350 [Halothermothrix orenii H 168]
gi|259645757|sp|B8CXG6.1|Y1235_HALOH RecName: Full=Probable transcriptional regulatory protein
Hore_12350
gi|219993382|gb|ACL69985.1| conserved hypothetical protein TIGR01033 [Halothermothrix orenii H
168]
Length = 253
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 153/247 (61%), Gaps = 8/247 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK D KRGK+ +++ + + VA G +P+ N LRLAI+KA D N
Sbjct: 1 MAGHSKWANIKHKKAKEDRKRGKLFSKLSKMITVAAREGGGDPEMNPDLRLAIQKAKDNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI++ + E + Y + YEGY G A+ ++ +++NR RT + IR++ +
Sbjct: 61 MPNDNIERAIKRGTGEL--EGVKYEKFVYEGYGPGGVALYLELMSDNRNRTAAEIRHVLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK---KNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V +MFK GQL+ N ++ L+ ALE GAED ++ +DN +TI T
Sbjct: 119 KNGGNLGESGCVSWMFKRRGQLIVDLNESDFDEDELMLEALEAGAED-VVTEDNLLTIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVY 235
PS F E++ LE G K S+ I M P N+ D A K+ KL++ L+ DV++VY
Sbjct: 178 DPSDFEEVRKQLEEQGIKFSSADIAMVPENNVNVDDKSTAKKVLKLMDALEDHDDVQEVY 237
Query: 236 TNALIFD 242
+N I D
Sbjct: 238 SNFDIPD 244
>gi|421856330|ref|ZP_16288697.1| putative transcriptional regulator [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403188269|dbj|GAB74898.1| putative transcriptional regulator [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 249
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G PD +N +LR +EKAL
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAAKLGG-PDAASNPRLRAVVEKALSV 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ I RAIQ+ N+++ E+ YEGY G A++V+ +T+N RTV ++R+ F
Sbjct: 60 NMTRDTINRAIQRGAGGEDNDDLK--EITYEGYGTGGVAVLVETMTDNLNRTVPDVRHCF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K GNL GSV ++F G++ F + + +L++ALE GAED I +D +I +IT+P
Sbjct: 118 SKTNGNLGTSGSVAYLFTKRGEISFDDLSLEEKILEVALEAGAEDIEISED-EILVITTP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +++++L G K++++ +VM P T D +A ++ K+++ L+ L DV+ VYTN
Sbjct: 177 ENFGDVQDALSAAGLKSDNAEVVMSPSTKAEITDIDQAKQIMKMIDMLEDLDDVQNVYTN 236
Query: 238 ALIFD 242
D
Sbjct: 237 VEFSD 241
>gi|334127864|ref|ZP_08501766.1| glucose-1-phosphate adenylyltransferase [Centipeda periodontii DSM
2778]
gi|333388585|gb|EGK59759.1| glucose-1-phosphate adenylyltransferase [Centipeda periodontii DSM
2778]
Length = 242
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 151/242 (62%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY E+ YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATEGSNYEELLYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL ++G V +MFK + +F+ + ++ LL++ LE GAED +D+ II
Sbjct: 119 KYGGNLGQDGCVSWMFKK--KAVFIVEREAFDDEDALLEIVLEAGAEDMRA-EDDVFEII 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
P F I+ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY
Sbjct: 176 AEPDAFDAIEAILGEKGIETASAEVTMVPDTTVHLADKDAEKMQTLIDALEDNDDVQNVY 235
Query: 236 TN 237
+N
Sbjct: 236 SN 237
>gi|395230679|ref|ZP_10408980.1| yebC [Citrobacter sp. A1]
gi|421847677|ref|ZP_16280811.1| hypothetical protein D186_21581 [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424733042|ref|ZP_18161612.1| integrase [Citrobacter sp. L17]
gi|394715622|gb|EJF21430.1| yebC [Citrobacter sp. A1]
gi|411770955|gb|EKS54683.1| hypothetical protein D186_21581 [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422892590|gb|EKU32445.1| integrase [Citrobacter sp. L17]
gi|455645922|gb|EMF24965.1| hypothetical protein H262_04045 [Citrobacter freundii GTC 09479]
Length = 247
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EQGDEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|212638553|ref|YP_002315073.1| hypothetical protein Aflv_0709 [Anoxybacillus flavithermus WK1]
gi|226708032|sp|B7GFM4.1|Y709_ANOFW RecName: Full=Probable transcriptional regulatory protein Aflv_0709
gi|212560033|gb|ACJ33088.1| Uncharacterized conserved protein [Anoxybacillus flavithermus WK1]
Length = 245
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA G +P TN LRLAIEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKMGGGDPTTNATLRLAIEKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K N E+ +Y E+RYEGY G A++V C+T+N+ RT SN+R F+
Sbjct: 61 MPNENIERAIKKATGN--QEHTHYEEIRYEGYGPGGVAVMVICLTDNKNRTASNVRVAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F G ++ + ++ +L A+E GA++ +D+ I T
Sbjct: 119 KNGGNLGETGCVSYLFDRKGLIVIARENLHIDEDDMLLQAIEAGADEMETTEDS-FEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP +F ++KN+L GF ++ I M P T + K+ KL++ L+ DV+++Y
Sbjct: 178 SPEQFEQVKNTLAAQGFTFATAEITMIPQTYTTLTGDDLTKMLKLIDMLEDDDDVQEIYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|92113968|ref|YP_573896.1| hypothetical protein Csal_1845 [Chromohalobacter salexigens DSM
3043]
gi|119391288|sp|Q1QWG1.1|Y1845_CHRSD RecName: Full=Probable transcriptional regulatory protein Csal_1845
gi|91797058|gb|ABE59197.1| protein of unknown function DUF28 [Chromohalobacter salexigens DSM
3043]
Length = 249
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 147/246 (59%), Gaps = 8/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI ++++REL VA G N +LR AI+KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFSKLIRELTVASRQGGGEVADNPRLRAAIDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ N + + E YEGY G A++V+C+T+NR RTVS++R+ F+
Sbjct: 61 MTKDTIQRAIERGAGNTDGDEME--ETVYEGYGPEGVAVLVECMTDNRNRTVSDVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL GSV FMF G+L + T ++ L ED + D + ++TSP
Sbjct: 119 KNGGNLGTSGSVAFMFHKQGRLTLPEGVSEETAMEATLAAEPEDIVTQADGTLEVVTSPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRP--YTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
+F +K++L + +S + + P YT+I D E A K+ KL + L+ L DV+ VY+
Sbjct: 179 RFGAVKDALLEADIEPVASDVGLYPDNYTSI--DDVETARKVLKLFDMLEDLDDVQNVYS 236
Query: 237 NALIFD 242
NA D
Sbjct: 237 NADFSD 242
>gi|429100979|ref|ZP_19162953.1| FIG000859: hypothetical protein [Cronobacter turicensis 564]
gi|426287628|emb|CCJ89066.1| FIG000859: hypothetical protein [Cronobacter turicensis 564]
Length = 246
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFDAG-DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|403386981|ref|ZP_10929038.1| hypothetical protein CJC12_03887 [Clostridium sp. JC122]
Length = 246
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 152/241 (63%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK VDAKRGKI T+I +E+ VA+ N G + DTN KLR + KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKVDAKRGKIFTKIGKEIVVAVKNGGPSEDTNAKLRDVVAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + ++Y + YEGY G A+IV+C+T+N+ RT N+R F+
Sbjct: 61 MPNDNIQRAIKKAAGELNA--VDYETIVYEGYGPEGTAVIVECLTDNKNRTAGNVRYAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGN+ G V FMF+ G+++ + + ++ L+ LAL+ GAEDF +++ + T+
Sbjct: 119 KQGGNMGSTGCVGFMFQSKGEIVIEKIDSIDEDELMMLALDAGAEDFAAEEE-VFVVTTA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +++ +L +G + +G+ M P T + A+K QK+L+ L+ DV++VY N
Sbjct: 178 PEDFGKVREALSESGIEFLEAGVKMIPDTYTEINEETAVKFQKMLDVLEDDEDVQEVYHN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|302875045|ref|YP_003843678.1| hypothetical protein Clocel_2171 [Clostridium cellulovorans 743B]
gi|307690336|ref|ZP_07632782.1| hypothetical protein Ccel74_19436 [Clostridium cellulovorans 743B]
gi|302577902|gb|ADL51914.1| protein of unknown function DUF28 [Clostridium cellulovorans 743B]
Length = 245
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 146/240 (60%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ KK DAKRGKI T++ +E+ VA G+NPDTN KLR I KA AN+
Sbjct: 1 MSGHSKWHNIQAKKGKADAKRGKIFTKLGKEIMVAAKGGSNPDTNAKLRDVIAKAKAANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P + I RA++K + E +NY E+ YEGY NG A +V+ +T+N+ R+ SN+R F++
Sbjct: 61 PADTISRAVKKGAGEL--EGVNYEEIVYEGYGPNGVAFVVNVLTDNKNRSASNVRVAFDR 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
NGGNL G V +MF GQ++ + ++ ++ ALE GAED + ++ IIT+
Sbjct: 119 NGGNLGASGCVAWMFAKKGQIIIERTADMDEDEIMMTALEAGAED-VDAQEEAFEIITAM 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE GF+ S+ I M P + A +Q+L++ L+ DV+ VY NA
Sbjct: 178 EDFSTVREALEAAGFEFASAEITMIPDNYVEVDLATAETVQRLVDRLEDDDDVQDVYHNA 237
>gi|168241528|ref|ZP_02666460.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194448488|ref|YP_002045952.1| hypothetical protein SeHA_C2113 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|386591736|ref|YP_006088136.1| hypothetical protein SU5_02510 [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|419730439|ref|ZP_14257385.1| hypothetical protein SEEH1579_03752 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419732124|ref|ZP_14259030.1| hypothetical protein SEEH1563_18154 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419738296|ref|ZP_14265061.1| hypothetical protein SEEH1573_15620 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419742312|ref|ZP_14268986.1| hypothetical protein SEEH1566_03517 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747448|ref|ZP_14273968.1| hypothetical protein SEEH1565_15225 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421570956|ref|ZP_16016639.1| hypothetical protein CFSAN00322_12244 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421574706|ref|ZP_16020327.1| hypothetical protein CFSAN00325_07804 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421579687|ref|ZP_16025249.1| hypothetical protein CFSAN00326_09732 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|194406792|gb|ACF67011.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205339568|gb|EDZ26332.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|381294447|gb|EIC35586.1| hypothetical protein SEEH1579_03752 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381302664|gb|EIC43696.1| hypothetical protein SEEH1573_15620 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381302973|gb|EIC44002.1| hypothetical protein SEEH1563_18154 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381314183|gb|EIC54957.1| hypothetical protein SEEH1566_03517 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381318602|gb|EIC59322.1| hypothetical protein SEEH1565_15225 [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383798780|gb|AFH45862.1| hypothetical protein YebC [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402521162|gb|EJW28500.1| hypothetical protein CFSAN00326_09732 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402522591|gb|EJW29913.1| hypothetical protein CFSAN00322_12244 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402524906|gb|EJW32203.1| hypothetical protein CFSAN00325_07804 [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
Length = 246
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGKVRDALEAASLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|332288348|ref|YP_004419200.1| DNA-binding regulatory protein, YebC/PmpR family [Gallibacterium
anatis UMN179]
gi|330431244|gb|AEC16303.1| DNA-binding regulatory protein, YebC/PmpR family [Gallibacterium
anatis UMN179]
Length = 247
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGADVGANPRLRTAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ + N+ I YEGY G AIIV+C+T+NR RTVS +R+ F
Sbjct: 61 MTRDTINRAIQRGAGGGDDTNMESI--VYEGYGPGGTAIIVECLTDNRKRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F G L+ + ++ L++ A+E GA+D D I T+
Sbjct: 119 KSGGNLGTDGSVAYLFTRKG-LILINEADEDALMEAAIEAGADDVQPQDDGSFEIYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE GFK + + + M P T A KL +L++ L+ DV+ VY N
Sbjct: 178 ELGSVRDALEQAGFKIDEAEVTMIPSTTAELDVETAPKLMRLVDMLEDCDDVQNVYHNGD 237
Query: 240 IFD 242
+ D
Sbjct: 238 MSD 240
>gi|345017505|ref|YP_004819858.1| hypothetical protein Thewi_1151 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|392941148|ref|ZP_10306792.1| DNA-binding regulatory protein, YebC/PmpR family
[Thermoanaerobacter siderophilus SR4]
gi|344032848|gb|AEM78574.1| UPF0082 protein yeeN [Thermoanaerobacter wiegelii Rt8.B1]
gi|392292898|gb|EIW01342.1| DNA-binding regulatory protein, YebC/PmpR family
[Thermoanaerobacter siderophilus SR4]
Length = 246
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 152/245 (62%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DAK+G+I T++ +++ + A G +P+TN KLR AIEKA N
Sbjct: 1 MSGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + N+ EV YEGY +G AIIV+ +T+N+ RT IR+IF+
Sbjct: 61 LPNENIQRAIKKGTGELGGANLE--EVIYEGYGPSGTAIIVEALTDNKNRTAGEIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
++GG+L GSV +MF G ++ N ++ L +A++ GA+DF + D + IIT
Sbjct: 119 RHGGSLGAAGSVTWMFDKVGIIIVEKNDSIDEDELAMVAIDAGAQDFSAE-DEEFEIITE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F E+K ++E G+K + + M P I + K +KL+++L++ DV+ VY N
Sbjct: 178 PSNFQEVKEAIEKAGYKISEAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQNVYHN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 VEIED 242
>gi|442805800|ref|YP_007373949.1| hypothetical protein Cst_c23790 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741650|gb|AGC69339.1| hypothetical protein Cst_c23790 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 242
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ KK DA++GKI T++ RE+ +A+ G +P+TN +L+ AI KA N
Sbjct: 1 MSGHSKWANIRHKKEKTDAQKGKIFTKLGREIAMAVKAGGPDPETNSRLKDAIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI R+I+K +I ++ Y E+ YEGY G AIIV+ +TNNR RT +IR+IF+
Sbjct: 61 MPNENIMRSIKKAAGDISTDD--YEEIVYEGYGPGGVAIIVETLTNNRNRTAGDIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V FMF GQ++ N +++L+ ALE GA D ++ D IIT
Sbjct: 119 KYGGNLGTTGCVSFMFDKRGQIIIEKNDSIDEDSLMMSALEAGALDVAVE-DEYYEIITE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYT 236
P F ++ ++LE G+K ES+ + M P T + E I ++KL+ +L+ DV+ +Y
Sbjct: 178 PQDFSKVADALEKEGYKFESAEVAMIPKTTTTLTNEEMIANMEKLIEKLEDHDDVQNIYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|260550668|ref|ZP_05824877.1| UPF0082 protein [Acinetobacter sp. RUH2624]
gi|424055841|ref|ZP_17793364.1| UPF0082 protein [Acinetobacter nosocomialis Ab22222]
gi|425742581|ref|ZP_18860685.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-487]
gi|445432594|ref|ZP_21439339.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC021]
gi|260406379|gb|EEW99862.1| UPF0082 protein [Acinetobacter sp. RUH2624]
gi|407438332|gb|EKF44876.1| UPF0082 protein [Acinetobacter nosocomialis Ab22222]
gi|425486407|gb|EKU52775.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii WC-487]
gi|444758890|gb|ELW83380.1| DNA-binding regulatory protein, YebC/PmpR family [Acinetobacter
baumannii OIFC021]
Length = 249
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 152/239 (63%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+ +RE+ A G + +N +LR +EKAL N
Sbjct: 1 MAGHSKWANIKHRKAKQDASRGKVFTKYIREIVTAARLGGGDAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++ EV YEGY V G A++++ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRAIQRGVGGEDNDDLK--EVTYEGYGVGGVAVLIETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++++ALE GAED + +D +I +ITSP
Sbjct: 119 KTNGNLGTAGSVSYLFTKRGEITFEDVSLEDKIMEVALEAGAEDIEVSED-EILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F E++++L G K++++ +VM P T D +A ++ K+++ + L DV+ VYTN
Sbjct: 178 TFGEVQDALAAAGLKSDNAEVVMSPSTKAEITDIDQAKQILKMIDMFEDLDDVQNVYTN 236
>gi|237809453|ref|YP_002893893.1| hypothetical protein Tola_2714 [Tolumonas auensis DSM 9187]
gi|259646892|sp|C4LBN3.1|Y2714_TOLAT RecName: Full=Probable transcriptional regulatory protein Tola_2714
gi|237501714|gb|ACQ94307.1| protein of unknown function DUF28 [Tolumonas auensis DSM 9187]
Length = 247
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 153/244 (62%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWANIK +K DAKRGK+ T+++RE+ A G PD +N +LR A+ AL
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKMFTKMIREITTAARLGG-PDGGSNPRLRAAVAAALSI 59
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+ ++ + RAI++ ++ + + YEGY +G A++V+C+T+NR RTV+ +R+ F
Sbjct: 60 NMTRDTVDRAIKRGAGG--DDGVELETLVYEGYGPSGTAVMVECMTDNRNRTVAGVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+K+GG L +GSV ++F G L F + ++ L++ ALE GA+D + D I + TSP
Sbjct: 118 SKSGGALGTDGSVAYLFTKKGILSFT-SADEDALMEAALEAGADDVETNDDGSIDVYTSP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F + ++LE GFK +++ + M P T + +A KL +L++ L+ L DV++VY N
Sbjct: 177 NDFGTVLDALEAAGFKPDNANVSMIPSTEVDLNADDAPKLLRLIDMLEDLDDVQEVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 TISD 240
>gi|421582943|ref|ZP_16028472.1| hypothetical protein CFSAN00328_03170, partial [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|402532409|gb|EJW39601.1| hypothetical protein CFSAN00328_03170, partial [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
Length = 249
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 63
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 64 MTRDTLNRAIARGVGGDEDSNMETI--IYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 121
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 122 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 180
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +++++LE KA+S+ + M P T A KL +L++ L+ DV++VY N
Sbjct: 181 EMGKVRDALEAASLKADSAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 240
Query: 240 IFD 242
I D
Sbjct: 241 ISD 243
>gi|292670922|ref|ZP_06604348.1| glucose-1-phosphate adenylyltransferase [Selenomonas noxia ATCC
43541]
gi|292647543|gb|EFF65515.1| glucose-1-phosphate adenylyltransferase [Selenomonas noxia ATCC
43541]
Length = 257
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 152/242 (62%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 16 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 75
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK + NY E+ YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 76 IPKDNINRAIQKGLG--ATDGSNYEELFYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 133
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL ++G V +MFK + +F+ + ++ LL+L LE GAED +D+ II
Sbjct: 134 KYGGNLGQDGCVSWMFKK--KAVFIVEREAFDDEDALLELVLEAGAEDMRT-EDDAFEII 190
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
P F I++ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY
Sbjct: 191 AEPDVFDSIESVLGEKGIETVSAEVTMVPDTTVHLVDKDAEKMQTLIDALEDNDDVQNVY 250
Query: 236 TN 237
+N
Sbjct: 251 SN 252
>gi|260598338|ref|YP_003210909.1| hypothetical protein CTU_25460 [Cronobacter turicensis z3032]
gi|260217515|emb|CBA31695.1| UPF0082 protein ESA_01378 [Cronobacter turicensis z3032]
Length = 246
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGSNPRLRAAIDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFDAG-DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALESAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|304440194|ref|ZP_07400084.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371243|gb|EFM24859.1| glucose-1-phosphate adenylyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 246
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NIK KK DA+RGKI T++ R + VA G +P+ N L++AI+KA N
Sbjct: 1 MSGHSKWNNIKNKKGKEDARRGKIFTKLGRYIMVAAKEGGPDPEYNASLKVAIDKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + +N + E+ YEGY +G A++V C+T+NR RT +R+ F+
Sbjct: 61 MPNDNIERAIKKGCGELGQDN--FEEITYEGYGPSGIAVMVKCLTDNRNRTAPEVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL--PNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + G V FMF+ GQL L N + + LAL+ GAED +ID+D IITS
Sbjct: 119 KNGGNLGQPGCVSFMFEKKGQLGVLKHENVDEEEFMLLALDLGAED-VIDRDEAFEIITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKL-QKLLNELKKLHDVKKVYT 236
P + E+++ LE G++ S I P D IKL +KL++ L+ DV+ VYT
Sbjct: 178 PESYEEVRDGLEENGYEFVQSDITFLPSNYTELTDENDIKLMEKLIDTLEDNDDVQDVYT 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|312110084|ref|YP_003988400.1| hypothetical protein GY4MC1_0976 [Geobacillus sp. Y4.1MC1]
gi|336234508|ref|YP_004587124.1| hypothetical protein Geoth_1046 [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215185|gb|ADP73789.1| protein of unknown function DUF28 [Geobacillus sp. Y4.1MC1]
gi|335361363|gb|AEH47043.1| protein of unknown function DUF28 [Geobacillus thermoglucosidasius
C56-YS93]
Length = 246
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA G +P N LRLA+EKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKTGGGDPAANPALRLAVEKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + E NY EVRYEGY G A++V C+T+N+ RT SN+R F+
Sbjct: 61 MPNENIERAIKKATGS--QEQTNYEEVRYEGYGPGGVAVMVVCLTDNKNRTASNVRVAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F G L+ + ++ +L A+E GAE+ +D+ I T
Sbjct: 119 KNGGNLGEAGCVSYLFDRKGLLVIAREGLDIDEDDMLLQAIEAGAEEMETTEDS-FEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F E+K LE GF S+ I M P T + K+ KL++ L+ DV++VY
Sbjct: 178 TPETFEEVKEQLEKQGFSFVSAEITMIPQTYTTLAGDDLKKMLKLIDALEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|289578206|ref|YP_003476833.1| hypothetical protein Thit_1001 [Thermoanaerobacter italicus Ab9]
gi|297544487|ref|YP_003676789.1| hypothetical protein Tmath_1058 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289527919|gb|ADD02271.1| protein of unknown function DUF28 [Thermoanaerobacter italicus Ab9]
gi|296842262|gb|ADH60778.1| protein of unknown function DUF28 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 246
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 149/245 (60%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DAK+G+I T++ +++ + A G +P+TN KLR AIEKA N
Sbjct: 1 MSGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + N+ EV YEGY G AIIV+ +T+N+ RT IR+IF+
Sbjct: 61 LPNENIQRAIKKGTGELGGANLE--EVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
+NGG+L GSV +MF G + + + L +A++ GAEDF + D + IIT
Sbjct: 119 RNGGSLGAAGSVTWMFDKVGIITVRKDDSIDEEELAMVAIDAGAEDFSAE-DEEFEIITE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F E+K ++E G+K + + M P I + K +KL+++L++ DV+ VY N
Sbjct: 178 PSNFQEVKEAIEKAGYKISEAEVTMLPKNTIQLSPEDYQKFEKLIDKLEENDDVQNVYHN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 VEIED 242
>gi|422343733|ref|ZP_16424660.1| hypothetical protein HMPREF9432_00720 [Selenomonas noxia F0398]
gi|355378149|gb|EHG25340.1| hypothetical protein HMPREF9432_00720 [Selenomonas noxia F0398]
Length = 242
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 152/242 (62%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK + NY E+ YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ATDGSNYEELFYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL ++G V +MFK + +F+ + ++ LL+L LE GAED +D+ II
Sbjct: 119 KYGGNLGQDGCVSWMFKK--KAVFIVEREAFDDEDALLELVLEAGAEDMRT-EDDAFEII 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
P F I++ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY
Sbjct: 176 AEPDVFDSIESVLGEKGIETVSAEVTMVPDTTVHLVDKDAEKMQTLIDALEDNDDVQNVY 235
Query: 236 TN 237
+N
Sbjct: 236 SN 237
>gi|188996624|ref|YP_001930875.1| hypothetical protein SYO3AOP1_0685 [Sulfurihydrogenibium sp.
YO3AOP1]
gi|226708017|sp|B2V8P8.1|Y685_SULSY RecName: Full=Probable transcriptional regulatory protein
SYO3AOP1_0685
gi|188931691|gb|ACD66321.1| protein of unknown function DUF28 [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 251
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHS+W NIK KK DA +G++ T++++E+ +A G +P+ N +LR+AIEKA + N
Sbjct: 1 MAGHSRWHNIKNKKAKADAIKGRMFTKVIKEITIAARLGGGDPEANPRLRIAIEKAKEVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P N+ RAI++ + E +NY EV+YEGY G AI+V+ T+NR RT + IR+IF+
Sbjct: 61 MPMENVERAIKRGTGEL--EGVNYEEVQYEGYGPGGVAIVVEATTDNRNRTTAEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V F F+ G ++ +P K ++ + + A+E GAED ++D I T+
Sbjct: 119 KYGGNLGSSGCVSFSFEDKG-IINVPKDKYSEDEIFEKAIEAGAEDVIMDDPEYYEIRTA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
PS+ +++ +LE G + + + P T + D E A KL KLL+ L+ DV+KVY
Sbjct: 178 PSELYKVRENLEKMGVEIAKAELTKIPTTTVQITDEETATKLMKLLDALEDNDDVQKVYA 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|262276115|ref|ZP_06053924.1| hypothetical protein VHA_003098 [Grimontia hollisae CIP 101886]
gi|262219923|gb|EEY71239.1| hypothetical protein VHA_003098 [Grimontia hollisae CIP 101886]
Length = 248
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 152/247 (61%), Gaps = 11/247 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-----NNPDTNIKLRLAIEKA 55
MAGHSKWANIK +K DAKRGKI T+++RE+ VA G NNP +LR A++KA
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREIVVAAKEGGAEVENNP----RLRAAVDKA 56
Query: 56 LDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115
L N+ ++ + RAI + +EN+ V YEGY G A++V+C+T+NR RTVS +R
Sbjct: 57 LSNNMTRDTVNRAISRGAGGEGDENMET--VIYEGYGPGGTAVMVECMTDNRNRTVSGVR 114
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+ F+K GGNL +GSV ++F+ G + + P ++ +++ ALE GA+D D I +
Sbjct: 115 HAFSKAGGNLGTDGSVSYLFEKKGVISYAPGLDEDAVMEAALEGGADDVETHDDGSIDVY 174
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P F +K++L+ GF+A+++ + + P T A KL +L++ L L DV++VY
Sbjct: 175 TTPEDFGAVKDALDAAGFEAQNAEVTLVPSTKSELDADTAPKLLRLIDALDDLDDVQEVY 234
Query: 236 TNALIFD 242
N I D
Sbjct: 235 HNGDISD 241
>gi|440740844|ref|ZP_20920317.1| hypothetical protein A986_21048 [Pseudomonas fluorescens BRIP34879]
gi|440375723|gb|ELQ12424.1| hypothetical protein A986_21048 [Pseudomonas fluorescens BRIP34879]
Length = 248
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 156/241 (64%), Gaps = 3/241 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GKI T+ +REL VA G +P +N +LRLA++KAL AN
Sbjct: 1 MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + +++ +E+ YEGY G A++V+C+T+NR RT + +R+ F+
Sbjct: 61 MSRDIIDRAVARGAGAADTDDM--VELTYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F+ GQ+ F P ++ L++ A+E A+D + ++D I + TS +
Sbjct: 119 KCGGNLGTDGSVAYLFERKGQISFAPGVDEDALIEAAMEADADDVVTNEDGSIDVFTSFA 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F ++ +LE GFK + IVM P T+ A K+ KLL+ L+ L DV+ VY+NA
Sbjct: 179 SFYAVRTALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKLLDMLEDLDDVQNVYSNAD 238
Query: 240 I 240
I
Sbjct: 239 I 239
>gi|327399041|ref|YP_004339910.1| hypothetical protein Hipma_0881 [Hippea maritima DSM 10411]
gi|327181670|gb|AEA33851.1| UPF0082 protein yeeN [Hippea maritima DSM 10411]
Length = 252
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRG I T++++E+ +A G +P++N +LR+AIEKA +AN
Sbjct: 1 MSGHNKWSTIKHKKAKEDAKRGAIFTKLIKEITIAARLGGGDPESNPRLRMAIEKAKEAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI +AI+K + Y ++ YEGY G A+I++ T+NR RT +++R++ N
Sbjct: 61 MPKQNIEKAIKKGTGELPG--TTYEDIIYEGYGPGGVAMIIEATTDNRQRTTASVRHLLN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITS 177
K GG+L + G V +MF + G + F +T++ L + ALE GA D ++D +IT
Sbjct: 119 KFGGSLGENGCVSWMFDYVGYMTFDKDSTEEEALFEAALEAGASDVRENEEDGVFEVITE 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P +F+ +K +LE GFK +++ + P + + +AI + KL+ L++ DV VY N
Sbjct: 179 PKEFMAVKEALEEHGFKPQTAELTRIPQNTVKLEGEKAISMLKLMEALEEDDDVSNVYAN 238
Query: 238 ALIFD 242
I D
Sbjct: 239 FDISD 243
>gi|33517052|sp|Q8RAR7.2|Y1135_THETN RecName: Full=Probable transcriptional regulatory protein TTE1135
Length = 243
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK +DAK+G+I T++ +++ + A G +P+TN KL+LAIE+A N
Sbjct: 1 MAGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPETNSKLKLAIERAKAFN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + + EV YEGY G AIIV+ +T+N+ RT IR+IF+
Sbjct: 61 LPSENIQRAIKRGTGELGGAKLE--EVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
+NGG L GSV +MF G ++ + + L+ +A+E GAEDF D + + IIT
Sbjct: 119 RNGGTLGAAGSVTWMFDKVGVIVVEKTDSINEEDLMMVAIEAGAEDFSAD-EGEFEIITD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F E++ ++E G+K + I M P I + K +KL+++L+ DV+ VY N
Sbjct: 178 PSNFQEVREAIEKAGYKISEAEITMLPKNTIKLSPEDYEKFEKLIDKLEDNDDVQNVYHN 237
Query: 238 ALIFD 242
+ D
Sbjct: 238 VELED 242
>gi|325922870|ref|ZP_08184593.1| hypothetical protein TIGR01033 [Xanthomonas gardneri ATCC 19865]
gi|325546647|gb|EGD17778.1| hypothetical protein TIGR01033 [Xanthomonas gardneri ATCC 19865]
Length = 242
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 151/235 (64%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR+A++K L +N+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARGGGGDPANNPRLRVAVDKGLSSNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y EVRYEGY+ G A+IVDC+T+NR+R V+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRAVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ +GSV FMFK G L F T ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTDGSVAFMFKRLGVLSFAAGTDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++K +L G + + I R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVKQALAAAGLEPVHAEITFRAENDIAVDGDTALQVRKLLDMLEDLDDVQDVYSN 234
>gi|334124546|ref|ZP_08498549.1| YebC like protein [Enterobacter hormaechei ATCC 49162]
gi|419958429|ref|ZP_14474493.1| hypothetical protein PGS1_11661 [Enterobacter cloacae subsp.
cloacae GS1]
gi|295095542|emb|CBK84632.1| conserved hypothetical protein TIGR01033 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
gi|333388473|gb|EGK59649.1| YebC like protein [Enterobacter hormaechei ATCC 49162]
gi|388606687|gb|EIM35893.1| hypothetical protein PGS1_11661 [Enterobacter cloacae subsp.
cloacae GS1]
Length = 246
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDAIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|190575571|ref|YP_001973416.1| hypothetical protein Smlt3713 [Stenotrophomonas maltophilia K279a]
gi|424669884|ref|ZP_18106909.1| UPF0082 protein [Stenotrophomonas maltophilia Ab55555]
gi|226705837|sp|B2FRN8.1|Y3713_STRMK RecName: Full=Probable transcriptional regulatory protein Smlt3713
gi|190013493|emb|CAQ47128.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
gi|401071955|gb|EJP80466.1| UPF0082 protein [Stenotrophomonas maltophilia Ab55555]
Length = 243
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAVDKGLAVNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E ++Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVDYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F P + + + A+E GA+D ++ D I ++TSP F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAPGADEEAITEAAIEAGADDIVVYPDDGSIDVVTSPDAFS 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMAAAGHVADHAEITFRADNDIKVEGEVALQVKKLLDMLEDLDDVQDVYSNA 235
>gi|326390108|ref|ZP_08211669.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
JW 200]
gi|325993756|gb|EGD52187.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
JW 200]
Length = 246
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 151/245 (61%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DAK+G+I T++ +++ + A G +P+TN KLR AIEKA N
Sbjct: 1 MSGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + N+ EV YEGY G AIIV+ +T+N+ RT IR+IF+
Sbjct: 61 LPNENIQRAIKKGTGELGGANLE--EVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
++GG+L GSV +MF G ++ N ++ L +A++ GA+DF + D + IIT
Sbjct: 119 RHGGSLGAAGSVTWMFDKVGIIIVEKNDSIDEDELAMVAIDAGAQDFSAE-DEEFEIITE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F E+K ++E G+K + + M P I + K +KL+++L++ DV+ VY N
Sbjct: 178 PSNFQEVKEAIEKAGYKISEAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQNVYHN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 VEIED 242
>gi|260887323|ref|ZP_05898586.1| glucose-1-phosphate adenylyltransferase [Selenomonas sputigena ATCC
35185]
gi|330838924|ref|YP_004413504.1| hypothetical protein Selsp_1085 [Selenomonas sputigena ATCC 35185]
gi|402833827|ref|ZP_10882437.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
CM52]
gi|260862959|gb|EEX77459.1| glucose-1-phosphate adenylyltransferase [Selenomonas sputigena ATCC
35185]
gi|329746688|gb|AEC00045.1| protein of unknown function DUF28 [Selenomonas sputigena ATCC
35185]
gi|402279673|gb|EJU28455.1| DNA-binding regulatory protein, YebC/PmpR family [Selenomonas sp.
CM52]
Length = 243
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 150/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY E+ YEGY G+AI++D +T+NR R+ +++R+IF+
Sbjct: 61 IPKDNIQRAIQKGLGAA--EGSNYEELTYEGYGPAGSAIMLDILTDNRNRSAADVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL + G V +MFK + T ++ L+ + L+ GAEDF + D+ I
Sbjct: 119 KYGGNLGETGCVGWMFKQKAVFIVEKETFEDEDELMGIVLDAGAEDFKAE-DDVFEITAD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ + I+ +L G + S+ I M P T + + +A K+Q L++ L++ DV+ VY+N
Sbjct: 178 PADYDAIEAALGEKGIETASAEITMVPDTTVKLEGKDAEKMQNLIDALEENDDVQNVYSN 237
>gi|20807595|ref|NP_622766.1| hypothetical protein TTE1135 [Thermoanaerobacter tengcongensis MB4]
gi|20516134|gb|AAM24370.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 245
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK +DAK+G+I T++ +++ + A G +P+TN KL+LAIE+A N
Sbjct: 3 MAGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPETNSKLKLAIERAKAFN 62
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + + EV YEGY G AIIV+ +T+N+ RT IR+IF+
Sbjct: 63 LPSENIQRAIKRGTGELGGAKLE--EVIYEGYGPAGTAIIVEALTDNKNRTAGEIRHIFD 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
+NGG L GSV +MF G ++ + + L+ +A+E GAEDF D + + IIT
Sbjct: 121 RNGGTLGAAGSVTWMFDKVGVIVVEKTDSINEEDLMMVAIEAGAEDFSAD-EGEFEIITD 179
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F E++ ++E G+K + I M P I + K +KL+++L+ DV+ VY N
Sbjct: 180 PSNFQEVREAIEKAGYKISEAEITMLPKNTIKLSPEDYEKFEKLIDKLEDNDDVQNVYHN 239
Query: 238 ALIFD 242
+ D
Sbjct: 240 VELED 244
>gi|148652820|ref|YP_001279913.1| hypothetical protein PsycPRwf_1013 [Psychrobacter sp. PRwf-1]
gi|170676080|sp|A5WE72.1|Y1013_PSYWF RecName: Full=Probable transcriptional regulatory protein
PsycPRwf_1013
gi|148571904|gb|ABQ93963.1| protein of unknown function DUF28 [Psychrobacter sp. PRwf-1]
Length = 248
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 155/239 (64%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGKI T+I+REL A G+ +P++N +LR A+EKAL AN
Sbjct: 1 MAGHSKWANIKHKKAKEDAKRGKIFTKIIRELVSATKQGDPDPESNPRLRAAVEKALSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ N ++ E+ YEGY V G A++V+ +T+N RTVS +R+ F
Sbjct: 61 MTKDTIKRAIERGAGNSDGGEMD--ELTYEGYGVGGVAVLVETMTDNVNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G+++F + ++ ++ +AL+ GA D D ++ + +IT P
Sbjct: 119 KFSGNLGTAGSVAYLFTKRGEIIFDDVSLEDEIMLVALDAGAVDIENDGES-LLVITEPD 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +K++L+ G+++ ++ + M P T + + +A K+ K+++ L+ L DV+ V+TN
Sbjct: 178 TFGAVKDALDAAGYESSNAEVTMSPSTTALIDNIDDAEKVMKMIDMLEDLDDVQDVHTN 236
>gi|456734380|gb|EMF59196.1| Hypothetical protein YebC [Stenotrophomonas maltophilia EPM1]
Length = 243
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAVDKGLAVNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E ++Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVDYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F P + + + A+E GA+D ++ D I ++TSP F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAPGADEEAITEAAIEAGADDIVVYPDDGSIDVVTSPDAFS 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMTAAGHVADHAEITFRADNDIKVEGEVALQVKKLLDMLEDLDDVQDVYSNA 235
>gi|261340249|ref|ZP_05968107.1| protein YebC [Enterobacter cancerogenus ATCC 35316]
gi|288317334|gb|EFC56272.1| protein YebC [Enterobacter cancerogenus ATCC 35316]
Length = 246
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDVIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|333369062|ref|ZP_08461203.1| YebC like protein [Psychrobacter sp. 1501(2011)]
gi|332975291|gb|EGK12190.1| YebC like protein [Psychrobacter sp. 1501(2011)]
Length = 300
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 155/239 (64%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DAKRGK+ T+I+REL A G +P+TN +LR A+EKAL AN
Sbjct: 53 MAGHSKWANIKHKKAKEDAKRGKVFTKIIRELVSATKQGEPDPETNPRLRAAVEKALSAN 112
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ N + ++ E+ YEGY V G A++V+ +T+N RTVS +R+ F
Sbjct: 113 MTKDTIQRAIERGAGNAEGGEMD--ELTYEGYGVGGVAVLVETMTDNVNRTVSEVRHAFT 170
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++LF + ++ ++ +AL+ GA D D ++ + +IT P+
Sbjct: 171 KFDGNLGTSGSVSYLFTKRGEILFDDVSLEDEIMLVALDAGALDIENDGES-LLVITEPA 229
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
F +K++L G+++ ++ + M P T + + E A K+ K+++ L+ L DV+ V+TN
Sbjct: 230 SFGAVKDALNAAGYESSNAEVTMSPSTTALIDNIEDAEKVMKMIDMLEDLDDVQDVHTN 288
>gi|423719124|ref|ZP_17693306.1| hypothetical protein GT20_0872 [Geobacillus thermoglucosidans
TNO-09.020]
gi|383368027|gb|EID45302.1| hypothetical protein GT20_0872 [Geobacillus thermoglucosidans
TNO-09.020]
Length = 246
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA G +P N LRLA+EKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKTGGGDPAANPALRLAVEKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + E NY EVRYEGY G A++V C+T+N+ RT SN+R F+
Sbjct: 61 MPNENIERAIKKVTGS--QEQTNYEEVRYEGYGPGGVAVMVVCLTDNKNRTASNVRVAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F G L+ + ++ +L A+E GAE+ +D+ I T
Sbjct: 119 KNGGNLGEAGCVSYLFDRKGLLVIAREGLDIDEDDMLLQAIEAGAEEMETTEDS-FEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F E+K LE GF S+ I M P T + K+ KL++ L+ DV++VY
Sbjct: 178 TPETFEEVKEQLEKQGFSFVSAEITMIPQTYTTLAGDDLKKMLKLIDALEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|415884242|ref|ZP_11546271.1| hypothetical protein MGA3_03685 [Bacillus methanolicus MGA3]
gi|387592037|gb|EIJ84354.1| hypothetical protein MGA3_03685 [Bacillus methanolicus MGA3]
Length = 242
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 142/241 (58%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGKI + +++ VA N G +P TN LRL IEKA N
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKIFMKFAKDIYVAAKNGGGDPATNPSLRLVIEKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI N + + Y E+ YEGY G A++V C+T+N+ RT SNIR F+
Sbjct: 61 MPNENIQRAI--NKATGVGSSAKYEEIVYEGYGPGGVAVMVQCLTDNKNRTASNIRLAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + GSV +MF G L+ ++ +L A+E GAE+ + D I T
Sbjct: 119 KNGGNLGESGSVSYMFDRKGYLVIDREELEIDEDEMLLQAIEAGAEE-METSDEAFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P +F+E+K +LE GF E + I M P T + A K++KLL+ L+ DV+ +Y
Sbjct: 178 DPDQFMEVKENLEKAGFTFEEAEITMIPQTYTQLNEEMAAKMEKLLDMLENDEDVQDIYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|289669610|ref|ZP_06490685.1| hypothetical protein XcampmN_14188 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 242
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 152/235 (64%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L AN+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K G
Sbjct: 62 VIERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCCG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ +GSV FMFK G L F ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTDGSVAFMFKRLGVLSFAAGIDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+++++L G + E + I R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVRDALAAAGLEPEHAEITFRADNDIAVDGDTAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|383765166|ref|YP_005444147.1| hypothetical protein PSMK_00910 [Phycisphaera mikurensis NBRC
102666]
gi|381385434|dbj|BAM02250.1| hypothetical protein PSMK_00910 [Phycisphaera mikurensis NBRC
102666]
Length = 238
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 146/241 (60%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKR KI ++ R + VA G +PD N+ LR A+++A AN
Sbjct: 1 MAGHSKWANIKHRKARQDAKRSKIWSKCSRAIIVAAKHGGGDPDQNLTLRYAVDEAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I +AI+K ++ +Y EV YEGY G A+ V+ +T+NR RTV +R +F
Sbjct: 61 MPKDTIAKAIEKGAGG--SDGDDYEEVVYEGYGPAGVAVYVETLTDNRNRTVPELRKMFE 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT--LLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL+ GSV F F+ G+ LF+ K + ++D+ LE GAED + D D I T+
Sbjct: 119 KCGGNLASAGSVAFTFERKGE-LFVDGAKADEEKIMDVVLEAGAED-VEDADGAWRITTA 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
F ++ +LE G + +G+ M P N+V DGE A K ++ L+EL DV+KVY
Sbjct: 177 VEDFHRVRAALEAAGLTPDQAGLPMLPL-NVVELDGEQAEKTERFLDELDDHDDVQKVYA 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|85858584|ref|YP_460786.1| hypothetical protein SYN_02974 [Syntrophus aciditrophicus SB]
gi|119369547|sp|Q2LRB1.1|Y739_SYNAS RecName: Full=Probable transcriptional regulatory protein
SYNAS_07390
gi|85721675|gb|ABC76618.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
Length = 250
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 159/244 (65%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK +D+KRGKI T+I++E+ +A G + + N +LR AI A + N
Sbjct: 1 MSGHSKWSTIKRKKGAIDSKRGKIFTKIIKEITLAARLGGGDTEGNSRLRQAILAAKNEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++NI RAI+K I +Y EV YEGY G A++V+ +T+N+ RTV+ IR+IF+
Sbjct: 61 MPRDNIDRAIKKGTGEIGGGE-SYEEVTYEGYGPGGVAVLVEVMTDNKNRTVAEIRHIFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL G V ++F+ G ++F + ++ L++LALE GAED + ++++++ +IT P
Sbjct: 120 KHGGNLGGNGCVSWLFEKKGSIVFDRDLIDEDALMELALEAGAED-IREEESQMDVITDP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S F ++++ LE G K + I M P I +G+A ++ K++ +L+ DV+ VY N
Sbjct: 179 SMFDKVRDVLEGKGMKYVQASIEMVPQNTIRLDEGKAEQMLKMIEKLEDNDDVQNVYANF 238
Query: 239 LIFD 242
I D
Sbjct: 239 DIPD 242
>gi|312898903|ref|ZP_07758291.1| conserved hypothetical protein TIGR01033 [Megasphaera
micronuciformis F0359]
gi|310620065|gb|EFQ03637.1| conserved hypothetical protein TIGR01033 [Megasphaera
micronuciformis F0359]
Length = 255
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 150/244 (61%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA++KA + N
Sbjct: 10 MSGHSKWANIKRKKGKNDAVRGKITTKISREITIAVRMGGADPTGNMRLKLALQKAKENN 69
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK NI RAIQK + E +Y E+ YEGY G A+ V+ +T+NR R +++R++F+
Sbjct: 70 IPKENINRAIQKGAGTL--EGQSYEEIVYEGYGPAGVALTVNVLTDNRNRAAADVRHLFS 127
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGN+ + G V +MFK+ G + + ++ L+++AL+ GA+D + D + I+T+P
Sbjct: 128 KHGGNMGETGCVSWMFKNLGLFVVAKDAVDEDKLMEVALDAGADDIRTEGD-EYEIVTTP 186
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ ++ +L E + I M P T I +A KL+ +++ L DV+ VY N
Sbjct: 187 EAYDTVEQALADHNIPTEHAQITMVPDTTIALSPEDAQKLENMIDAFDDLDDVQDVYHNG 246
Query: 239 LIFD 242
D
Sbjct: 247 EFPD 250
>gi|313673194|ref|YP_004051305.1| hypothetical protein Calni_1234 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939950|gb|ADR19142.1| protein of unknown function DUF28 [Calditerrivibrio nitroreducens
DSM 19672]
Length = 242
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 151/241 (62%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN--NPDTNIKLRLAIEKALDA 58
MAGHSKWANIK +K DAK+GKI T+I +EL VA G +P+ N +LRLA++KA A
Sbjct: 1 MAGHSKWANIKHRKAAQDAKKGKIFTKIAKELTVAAKLGQSGDPEFNPRLRLALDKAKAA 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+PK+N+ RAI+K + + NY +V YEGY G AI++ +T+N+ RTV+ +R+
Sbjct: 61 NMPKDNVERAIKKGLG--EGDGSNYEDVIYEGYGPGGVAILIQALTDNKNRTVAEVRSTL 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPN--TKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K GG++ + G V +MF G ++ +P ++TL+ +A++ GAED ++ D+ +IT
Sbjct: 119 TKRGGSMGEAGCVSWMFDKKG-VINIPKDAVDEDTLMMIAIDSGAED-VVTNDDGYEVIT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P+ + +K ++E + K E + I MRP I EA K LL L+ L DV++VY+
Sbjct: 177 DPANYETVKKAIESSNIKIEYAEITMRPKNTIELSGEEAEKTMALLEALEDLDDVQEVYS 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|392979631|ref|YP_006478219.1| hypothetical protein A3UG_13955 [Enterobacter cloacae subsp.
dissolvens SDM]
gi|401675896|ref|ZP_10807883.1| YebC like protein [Enterobacter sp. SST3]
gi|392325564|gb|AFM60517.1| hypothetical protein A3UG_13955 [Enterobacter cloacae subsp.
dissolvens SDM]
gi|400216940|gb|EJO47839.1| YebC like protein [Enterobacter sp. SST3]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|401764205|ref|YP_006579212.1| hypothetical protein ECENHK_13695 [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400175739|gb|AFP70588.1| hypothetical protein ECENHK_13695 [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISF-EKGDEDVIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|296101797|ref|YP_003611943.1| hypothetical protein ECL_01434 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295056256|gb|ADF60994.1| hypothetical protein ECL_01434 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDTNMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDVIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|336316081|ref|ZP_08570983.1| DNA-binding regulatory protein, YebC/PmpR family [Rheinheimera sp.
A13L]
gi|335879571|gb|EGM77468.1| DNA-binding regulatory protein, YebC/PmpR family [Rheinheimera sp.
A13L]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 143/242 (59%), Gaps = 3/242 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWAN+K +K DAKR KI T+++REL V+ + D N +LR A+ KAL N+
Sbjct: 1 MAGHSKWANMKHRKARQDAKRVKIFTKLIRELTVSARISADVDANPRLRTAVAKALLNNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
++ I RAI++ + + NY E+ YEGY G AI+V+ +T+N RTV+++R+ F K
Sbjct: 61 TRDAIDRAIKRGAG--EQDGSNYEELVYEGYGPCGVAIVVETLTDNHKRTVADVRSAFTK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
G N+ GSV ++F G + F P ++ +LD+ALE GAED + D I +ITSP
Sbjct: 119 YG-NMGTAGSVSYLFSKKGMISFAPGLSEDQVLDVALEAGAEDVVSHDDGSIEVITSPDS 177
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
F +++ +LE A+ + I M P +K KL++ L+ DV+ VY NA I
Sbjct: 178 FNDVREALEAAKLIADDAEITMMPSVKAEIDADHVVKFFKLIDMLEDFDDVQNVYHNAEI 237
Query: 241 FD 242
D
Sbjct: 238 AD 239
>gi|6226438|sp|Q9ZNK0.1|YU82_CLOHI RecName: Full=Probable transcriptional regulatory protein ORF2U
gi|3868871|dbj|BAA34259.1| unnamed protein product [Clostridium histolyticum]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 147/241 (60%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK VDAKRGKI T+I +E+ +A N G NPD N KLR I KA N
Sbjct: 1 MSGHSKWHNIQAKKSKVDAKRGKIFTKIGKEIAIAAKNGGPNPDANPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK++I RAI+K + +NY E+ YEGY +G A++V +T+N+ R+ N+R+ F+
Sbjct: 61 MPKDSIERAIKKAAGELAG--VNYEEILYEGYGPDGIAVLVQALTDNKNRSAGNVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V FMF+ GQ++ N + + L+ +ALE GAEDF +D I TS
Sbjct: 119 KHGGNLGSTGCVSFMFQTKGQIVIEKNDELDEEELMMMALECGAEDFQ-SEDEVYIITTS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++ +LE G + + + P T V + A K QK+L+ L+ DV+ VY N
Sbjct: 178 PEDFGSVRETLEEKGLEFLEAEVKSIPDTYTVIDENTAGKFQKMLDVLEDDEDVQDVYHN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|167037422|ref|YP_001665000.1| hypothetical protein Teth39_1009 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040089|ref|YP_001663074.1| hypothetical protein Teth514_1449 [Thermoanaerobacter sp. X514]
gi|256752594|ref|ZP_05493448.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914172|ref|ZP_07131488.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X561]
gi|307724592|ref|YP_003904343.1| hypothetical protein Thet_1453 [Thermoanaerobacter sp. X513]
gi|320115835|ref|YP_004185994.1| hypothetical protein Thebr_1035 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226734048|sp|B0K951.1|Y1009_THEP3 RecName: Full=Probable transcriptional regulatory protein
Teth39_1009
gi|226734168|sp|B0K0L3.1|Y1449_THEPX RecName: Full=Probable transcriptional regulatory protein
Teth514_1449
gi|166854329|gb|ABY92738.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X514]
gi|166856256|gb|ABY94664.1| protein of unknown function DUF28 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748532|gb|EEU61582.1| protein of unknown function DUF28 [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889107|gb|EFK84253.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X561]
gi|307581653|gb|ADN55052.1| protein of unknown function DUF28 [Thermoanaerobacter sp. X513]
gi|319928926|gb|ADV79611.1| protein of unknown function DUF28 [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 152/245 (62%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DAK+G+I T++ +++ + A G +P+TN KLR AIEKA N
Sbjct: 1 MSGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGGDPNTNSKLRDAIEKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + N+ EV YEGY +G AIIV+ +T+N+ RT IR+IF+
Sbjct: 61 LPNENIQRAIKKGTGELGGANLE--EVIYEGYGPSGTAIIVEALTDNKNRTAGEIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
++GG+L GSV +MF G ++ + ++ L +A++ GA+DF + D + IIT
Sbjct: 119 RHGGSLGAAGSVTWMFDKVGIIIVEKDNSIDEDELAMVAIDAGAQDFSAE-DEEFEIITE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F E+K ++E G+K + + M P I + K +KL+++L++ DV+ VY N
Sbjct: 178 PSNFQEVKEAIEKAGYKISEAEVTMLPKNTIQLSPEDYEKFEKLIDKLEENDDVQNVYHN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 VEIED 242
>gi|239827861|ref|YP_002950485.1| hypothetical protein GWCH70_2524 [Geobacillus sp. WCH70]
gi|259646866|sp|C5D5F1.1|Y2524_GEOSW RecName: Full=Probable transcriptional regulatory protein
GWCH70_2524
gi|239808154|gb|ACS25219.1| protein of unknown function DUF28 [Geobacillus sp. WCH70]
Length = 246
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGK+ ++ +E+ VA G +P +N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKTGGGDPASNPALRLVIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K E+ NY EVRYEGY G A++V C+T+N+ RT SN+R F+
Sbjct: 61 MPNENIERAIKKATGT--QEHTNYEEVRYEGYGPGGVAVMVVCLTDNKNRTASNVRVAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V ++F G L+ + ++ +L A+E GAE+ +D+ I T
Sbjct: 119 KNGGNLGETGCVSYLFDRKGLLVIAREGLDIDEDDMLLQAIEAGAEEMETTEDS-FEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F E+K LE GF S+ I M P T + K+ KL++ L+ DV++VY
Sbjct: 178 TPEAFEEVKEQLEKNGFTFASAEITMIPQTYTTLAGDDLKKMLKLIDTLEDDDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|449128583|ref|ZP_21764829.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP33]
gi|448940991|gb|EMB21895.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP33]
Length = 247
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ +A G +P TN +LR A+ KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISIAAKMGGGDPATNPRLRTAVLKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + +NY E+ YEGY G A++V+ +T+N+ RT +++RNIF
Sbjct: 61 MPKDNIERAIKKGTGELGA--VNYEELLYEGYGPGGVAVLVEVLTDNKNRTAASVRNIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL GSV +MF G + + + + +++ ALE GAED + D IT+ T P
Sbjct: 119 KSGGNLGATGSVAYMFNRKGVIEYDADAVSEEAIMEAALEAGAEDIATE-DGVITVTTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F + +L+ GF++ S+ + M P T + K K++++L++ DV+ V +N
Sbjct: 178 NDFASVLEALQEKGFESVSASVSMVPDTYVALDADTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|255658185|ref|ZP_05403594.1| glucose-1-phosphate adenylyltransferase [Mitsuokella multacida DSM
20544]
gi|260849493|gb|EEX69500.1| glucose-1-phosphate adenylyltransferase [Mitsuokella multacida DSM
20544]
Length = 244
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 150/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGADPTGNMRLKLALSKAKSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAI+K N +E+ Y E+ YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNIKRAIEKGLGN--SESGTYEELMYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL ++G V +MFK + T ++ L+++ L+ GAED +D I
Sbjct: 119 KFGGNLGQDGCVAWMFKKKAVFIVEKETFDDEDALMEIVLDAGAEDMKA-EDEVFEITAE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +I+ +L G + S+ + M P T + +A K+Q L++ L++ DV+ VY+N
Sbjct: 178 PDAFDDIEKALGEKGIETASAEVTMVPDTTVHLAGKDAEKMQNLIDALEENDDVQNVYSN 237
>gi|78048838|ref|YP_365013.1| hypothetical protein XCV3282 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325929367|ref|ZP_08190497.1| hypothetical protein TIGR01033 [Xanthomonas perforans 91-118]
gi|346725952|ref|YP_004852621.1| hypothetical protein XACM_3071 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|119391966|sp|Q3BQF0.1|Y3282_XANC5 RecName: Full=Probable transcriptional regulatory protein XCV3282
gi|78037268|emb|CAJ25013.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325540279|gb|EGD11891.1| hypothetical protein TIGR01033 [Xanthomonas perforans 91-118]
gi|346650699|gb|AEO43323.1| hypothetical protein XACM_3071 [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 242
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 155/236 (65%), Gaps = 6/236 (2%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L +N+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSSNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
+ RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VMERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F ++TL D A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGIDEDTLTDAAIEAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+++++L G + + I R +I DGE A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVRDALVAAGLEPAHAEITFRADNDIAV-DGETAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|451821274|ref|YP_007457475.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451787253|gb|AGF58221.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 246
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DA RGK+ T++ +E+ VA+ N G + DTN KLR I KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKTDAARGKVFTKLGKEIVVAVKNGGASTDTNAKLRDVIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I +AI+K + + + +NY + YEGY +G A+IV+ +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTIAKAIKKASGELSS--VNYENIVYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ G V FMF+ G+L+ + + ++ LAL+ GAEDF D++ + T P
Sbjct: 119 KGGGNMGTSGCVAFMFQEKGELIIEKGDRDEEEMMMLALDAGAEDFSADEEEVFVVTTLP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE G + + + M P T + EA K QK+LN L + DV++VY NA
Sbjct: 179 EDFGTVREALEAEGIEFLEAAVKMIPDTYTAINEDEAKKFQKMLNLLDEDDDVQEVYHNA 238
>gi|357057957|ref|ZP_09118814.1| hypothetical protein HMPREF9334_00531 [Selenomonas infelix ATCC
43532]
gi|355374534|gb|EHG21828.1| hypothetical protein HMPREF9334_00531 [Selenomonas infelix ATCC
43532]
Length = 648
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 407 MSGHSKWANIKRKKGANDAIRGKITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 466
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY E+ YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 467 IPKDNINRAIQKGLG--ATEGSNYEELFYEGYGPGGTAVMLDILTDNRNRTAADVRHLFS 524
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL ++G V +MFK + + ++ LL++ LE GAED + +D+ I
Sbjct: 525 KYGGNLGQDGCVSWMFKKKAVFIVERESFDDEDALLEIVLEAGAED-MRSEDDVFEITAE 583
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F I+ L G + S+ + M P T + D +A K+Q L++ L+ DV+ VY+N
Sbjct: 584 PEAFEAIEAVLGEKGIETASAEVTMVPDTTVHLADKDAEKMQTLIDALEDNDDVQNVYSN 643
>gi|344208565|ref|YP_004793706.1| hypothetical protein [Stenotrophomonas maltophilia JV3]
gi|343779927|gb|AEM52480.1| UPF0082 protein yeeN [Stenotrophomonas maltophilia JV3]
Length = 243
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAVDKGLAVNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E ++Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVDYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F P + + + A+E GA+D ++ D I ++TSP F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAPGADEEAITEAAIEAGADDIVVYPDDGSIDVVTSPDAFN 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++ G A+ + + R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMAAAGHVADHAEVTFRADNDIKVEGDVALQVKKLLDMLEDLDDVQDVYSNA 235
>gi|188586415|ref|YP_001917960.1| hypothetical protein Nther_1800 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|226695972|sp|B2A5L8.1|Y1800_NATTJ RecName: Full=Probable transcriptional regulatory protein
Nther_1800
gi|179351102|gb|ACB85372.1| protein of unknown function DUF28 [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 250
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 146/247 (59%), Gaps = 8/247 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK VD KRGK+ +++ +E+ VA G +P+ N +LR+A++KA + N
Sbjct: 1 MAGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGGDPEKNFRLRMAVQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +K NY E+ YEGY G AI +D +T+N+ RT S +R+IF
Sbjct: 61 MPNDNIERAIKKGTGELKG--FNYEEISYEGYGPGGVAIFLDAMTDNKNRTASEVRHIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
KN GNL ++G V +MF G + N + L+ L E GAEDF D +N I I+
Sbjct: 119 KNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAEAGAEDFKSD-NNSIEIV 177
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P F +++ +LE + M P + + EA K+ +L+ EL+ DV+ VY
Sbjct: 178 TTPQDFEQVREALENEEVPLSYKEVTMIPSNTVKVEGEEAKKVLQLMEELEDHDDVQNVY 237
Query: 236 TNALIFD 242
N I D
Sbjct: 238 ANFDIDD 244
>gi|429092284|ref|ZP_19154922.1| FIG000859: hypothetical protein [Cronobacter dublinensis 1210]
gi|429095910|ref|ZP_19158016.1| hypothetical protein BN133_506 [Cronobacter dublinensis 582]
gi|426282250|emb|CCJ84129.1| hypothetical protein BN133_506 [Cronobacter dublinensis 582]
gi|426742946|emb|CCJ81035.1| FIG000859: hypothetical protein [Cronobacter dublinensis 1210]
Length = 246
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFEAG-DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|407794726|ref|ZP_11141748.1| hypothetical protein A10D4_11284 [Idiomarina xiamenensis 10-D-4]
gi|407210921|gb|EKE80793.1| hypothetical protein A10D4_11284 [Idiomarina xiamenensis 10-D-4]
Length = 251
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T+++RE+ V A G P+TN +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIREITVSAREGGPEPETNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + AI++ + + +N+ E+ YEGY G A+++ C+T+NR RTVS +R F+
Sbjct: 61 MKRDTVDTAIKRGSGELDGDNVE--ELTYEGYGPGGVAVLLQCMTDNRNRTVSEVRFAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+ GNL +GSV ++F G + F + ++ ++++ALE GAED + D + + T+
Sbjct: 119 KHNGNLGTDGSVAYLFSKRGVISFSADAGVDEDQVMEVALETGAEDVVSYDDGSLDVFTT 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++K+ L+ G A + + P T A KL++ L+ L DV+ VY N
Sbjct: 179 AELFGQVKDGLDAAGLHASHAEVTQVPATKAELDIDTATTFLKLIDVLEDLDDVQDVYHN 238
Query: 238 ALIFD 242
A I D
Sbjct: 239 ADISD 243
>gi|395232306|ref|ZP_10410557.1| hypothetical protein A936_01597 [Enterobacter sp. Ag1]
gi|394733292|gb|EJF32920.1| hypothetical protein A936_01597 [Enterobacter sp. Ag1]
Length = 246
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G+A++V+C+++NR RTV+ +R+ FN
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGSAVMVECLSDNRNRTVAEVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVISFEAG-DEDQIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ +K++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVKDALEAAGLKADNAEVSMIPSTKADMDADTAPKLMRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|384110140|ref|ZP_10010968.1| DNA-binding regulatory protein, YebC/PmpR family [Treponema sp.
JC4]
gi|383868306|gb|EID83977.1| DNA-binding regulatory protein, YebC/PmpR family [Treponema sp.
JC4]
Length = 247
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K I DAKRGKI T+ ++E+ +A G +P++N +LR I KA AN
Sbjct: 1 MSGHSKWATIKHAKGIADAKRGKIFTKFIKEISIAARMGGGDPNSNPRLRTIIIKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K ++ +Y E+ YEGY+ G A++V+ +T+N+ R ++IRNIF
Sbjct: 61 MPKDNIERAIKKGTG--EDGATSYEELVYEGYAPGGVAVMVEVLTDNKNRAAADIRNIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL GSV MF+ G + + ++ ++++ALE GA+D ++++D IT+ TSP
Sbjct: 119 KNGGNLGTTGSVSRMFQRKGTIEYDAEKVSEDEVMEVALEAGADD-IVNEDGVITVTTSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F + ++L GF++ S+ + + P A K+QK++++L+ DV+ VY A
Sbjct: 178 DAFAAVADALNEKGFESLSADVGLVPDAYQPVDKDTAAKVQKMIDKLEDNDDVQNVYHTA 237
Query: 239 LIFD 242
D
Sbjct: 238 EFPD 241
>gi|258646856|ref|ZP_05734325.1| glucose-1-phosphate adenylyltransferase [Dialister invisus DSM
15470]
gi|260404295|gb|EEW97842.1| glucose-1-phosphate adenylyltransferase [Dialister invisus DSM
15470]
Length = 244
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 143/240 (59%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NIKRKK DA R KI T+I +E+ +A G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWENIKRKKGKTDAIRAKITTKISKEITIAARMGGGDPVGNMRLKLALTKAKQNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K + E+ YEGY GAA+IV+C T+NR R +++R+ F
Sbjct: 61 VPKDNIQRAIAKGVGAASG--AGFDEITYEGYGPGGAAVIVECNTDNRNRAAADVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+GG++ G V +MFK G ++ ++TL+ +AL+ GAED D D+ I T+P
Sbjct: 119 HHGGSIGTPGCVAWMFKKKGIIVVSKEAADEDTLMMIALDAGAEDVSTDGDS-FEITTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F+ + +LE G E+S + M P + + A + KL +EL++L DV+ VYTNA
Sbjct: 178 EDFLTVSEALEKEGIAVEASEVTMVPDNTVSLEGDAADVMNKLTSELEELDDVQDVYTNA 237
>gi|42526995|ref|NP_972093.1| hypothetical protein TDE1487 [Treponema denticola ATCC 35405]
gi|422341989|ref|ZP_16422929.1| hypothetical protein HMPREF9353_01595 [Treponema denticola F0402]
gi|449102659|ref|ZP_21739407.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola AL-2]
gi|449107345|ref|ZP_21744001.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ASLM]
gi|449109440|ref|ZP_21746074.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33520]
gi|449111952|ref|ZP_21748507.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33521]
gi|449113244|ref|ZP_21749759.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 35404]
gi|449115833|ref|ZP_21752293.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H-22]
gi|449120114|ref|ZP_21756500.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H1-T]
gi|449122519|ref|ZP_21758852.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola MYR-T]
gi|449131250|ref|ZP_21767466.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP37]
gi|451969040|ref|ZP_21922269.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola US-Trep]
gi|49036513|sp|P62042.1|Y1487_TREDE RecName: Full=Probable transcriptional regulatory protein TDE_1487
gi|41817419|gb|AAS12004.1| conserved hypothetical protein TIGR01033 [Treponema denticola ATCC
35405]
gi|325474057|gb|EGC77245.1| hypothetical protein HMPREF9353_01595 [Treponema denticola F0402]
gi|448940083|gb|EMB20994.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola SP37]
gi|448947509|gb|EMB28353.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola MYR-T]
gi|448948258|gb|EMB29095.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H1-T]
gi|448955319|gb|EMB36086.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola H-22]
gi|448956233|gb|EMB36994.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33521]
gi|448958683|gb|EMB39411.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 33520]
gi|448960824|gb|EMB41533.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ATCC 35404]
gi|448962590|gb|EMB43278.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola ASLM]
gi|448966248|gb|EMB46906.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola AL-2]
gi|451702212|gb|EMD56641.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola US-Trep]
Length = 247
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ +A G +P TN +LR A+ KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISIAAKMGGGDPATNPRLRTAVLKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + +NY E+ YEGY G A++V+ +T+N+ RT +++RNIF
Sbjct: 61 MPKDNIERAIKKGTGELGA--VNYEELLYEGYGPGGVAVLVEVLTDNKNRTAASVRNIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL GSV +MF G + + + +++ ALE GAED + +D IT+ T P
Sbjct: 119 KSGGNLGATGSVAYMFNRKGVIEYDAEVVSEEAIMEAALEAGAED-IATEDGVITVTTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F + +L+ GF++ S+ + M P T + K K++++L++ DV+ V +N
Sbjct: 178 NDFASVLEALQEKGFESVSAAVSMVPDTYVALDADTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|397906046|ref|ZP_10506871.1| FIG000859: hypothetical protein [Caloramator australicus RC3]
gi|397160806|emb|CCJ34206.1| FIG000859: hypothetical protein [Caloramator australicus RC3]
Length = 246
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 151/242 (62%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA RGK+ T+I +E++VA+ G NP+ N +LR I KA N
Sbjct: 1 MAGHSKWANIKHRKGKQDALRGKLFTKIGKEIQVAVKEGGPNPEANSRLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ +K+ + Y E+ YEGY NG A+IV +T+NR RT ++R+IF
Sbjct: 61 MPMENIQRAIKRATGELKD--VTYEEIIYEGYGPNGVAVIVQALTDNRNRTAGDVRHIFE 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V F+F+ G ++ +++L+ +AL+ GAEDF ++D I TS
Sbjct: 119 KFGGNLGATGCVSFLFEKKGLIIVEKEEGIDEDSLMMMALDAGAEDFSSEED-AYEITTS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVYT 236
P F +++ +LE G K S+ + M P T + DGEA K +KLL+ L++ DV+ V+
Sbjct: 178 PEDFSKVREALENNGIKLASAEVSMIPSTYVAL-DGEAAEKFEKLLDRLEENDDVQNVWH 236
Query: 237 NA 238
NA
Sbjct: 237 NA 238
>gi|337288136|ref|YP_004627608.1| hypothetical protein TOPB45_0578 [Thermodesulfobacterium sp. OPB45]
gi|334901874|gb|AEH22680.1| UPF0082 protein yeeN [Thermodesulfobacterium geofontis OPF15]
Length = 249
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 156/240 (65%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN--NPDTNIKLRLAIEKALDA 58
MAGHS WA IKRKK DAKRG++ T+++RE+ VA+ G +P+ N +LR AI+ A A
Sbjct: 1 MAGHSHWAQIKRKKAAQDAKRGQLFTKLIREIIVAVKTGGSGDPELNPRLRAAIQAARAA 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+PK NI RAI+K E Y E +EGY G AI++ IT+NR RTVS +R++F
Sbjct: 61 NMPKENIERAIKKALG--LEEGTQYEEAFFEGYGPGGVAILISAITDNRKRTVSELRHLF 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
NK GGNL++ G+V ++F+ G L+ +P ++ +L++A+EKGAED + +++I +IT P
Sbjct: 119 NKYGGNLAEPGAVSYLFEQKG-LIVVPKKEEEKVLEIAIEKGAED-TKEYESEIEVITDP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
S+F EIK +LE G + S+ + M P T + +D A L KL+ L L DV++VY N
Sbjct: 177 SQFEEIKKALEDAGIEIISAKVTMVPKTIVPVEDEATANNLLKLMEALDDLDDVQQVYAN 236
>gi|402840563|ref|ZP_10889027.1| DNA-binding regulatory protein, YebC/PmpR family [Klebsiella sp.
OBRC7]
gi|402285780|gb|EJU34261.1| DNA-binding regulatory protein, YebC/PmpR family [Klebsiella sp.
OBRC7]
Length = 246
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ FN
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISF-EKGDEDAIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|311279236|ref|YP_003941467.1| hypothetical protein Entcl_1927 [Enterobacter cloacae SCF1]
gi|308748431|gb|ADO48183.1| protein of unknown function DUF28 [Enterobacter cloacae SCF1]
Length = 246
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISFDAG-DEDTIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|408822124|ref|ZP_11207014.1| hypothetical protein PgenN_03344 [Pseudomonas geniculata N1]
Length = 243
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAMDKGLAVNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E ++Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVDYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F P + + + A+E GA+D ++ D I ++TSP F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAPGVDEEAITEAAIEAGADDIVVYPDDGSIDVVTSPDAFN 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMTAAGHVADHAEITFRADNDIKVEGDVALQVKKLLDMLEDLDDVQDVYSNA 235
>gi|374298163|ref|YP_005048354.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
clariflavum DSM 19732]
gi|359827657|gb|AEV70430.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
clariflavum DSM 19732]
Length = 242
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKRKK DA+R KI T++ RE+ V + G +P++N KLR I KA AN
Sbjct: 1 MAGHSKWANIKRKKEKTDAQRAKIFTKLGREIAVIVRQGGPDPESNSKLRDVIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI R I+K + +N +Y E+ YEGY G A+IV+ +T+NR RT +++R+ F+
Sbjct: 61 MPNENIMRCIKKAAGEV--DNTDYEEIVYEGYGPGGVAVIVEAMTDNRNRTAADVRHYFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V FMF G +L N K ++ L+ ALE GAEDF D++ IIT+
Sbjct: 119 KFGGNLGTTGCVSFMFDKKGVILIEKNGKINEDDLMMEALEYGAEDFSTDEE-YYEIITA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKL-QKLLNELKKLHDVKKVYT 236
P F +++ LE G++ + + M P T D + I+L KL+ L+ L DV+ VY
Sbjct: 178 PEDFSKVREGLENKGYEFIKAEVEMVPQTMTKLTDPKQIELMDKLIEHLEDLDDVQNVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|406039343|ref|ZP_11046698.1| hypothetical protein AursD1_05924 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 249
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DA R K+ T+ +RE+ A G +N +LR +EKAL N
Sbjct: 1 MAGHSKWANTKHRKAKQDASRAKVFTKYIREIVTAAKLGGAEAASNPRLRAVVEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAIQ+ N+++N EV YEGY V G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDAINRAIQRGAGGEDNDDLN--EVTYEGYGVGGVAVLVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV ++F G++ F + ++ ++++ALE GA+D I++D I +ITSP
Sbjct: 119 KTNGNLGTNGSVSYLFTKRGEISFEDVSLEDKIMEVALEAGADDIEIEEDG-ILVITSPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F +++++L G K++++ +VM P T D E A ++ K+++ L+ L DV+ VYTN
Sbjct: 178 SFGDVQDALTAAGLKSDNAEVVMSPSTKAEITDIEQAKQILKMIDMLEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|95931131|ref|ZP_01313856.1| protein of unknown function DUF28 [Desulfuromonas acetoxidans DSM
684]
gi|95132821|gb|EAT14495.1| protein of unknown function DUF28 [Desulfuromonas acetoxidans DSM
684]
Length = 248
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 152/243 (62%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T++++E+ VA G + N +LR A++KA N
Sbjct: 1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIKEITVAAKIGGGDLEANPRLRTAVDKAKGGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K ++ + ++Y E EGY G A++V+ +T+NR RTV+++R+ F
Sbjct: 61 MPKDTIERAIKKGTGDL--DGVSYEEGTMEGYGPGGVAVMVEIMTDNRTRTVADVRHCFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+ G+L +GSV F+F G + +T+ ++ALE GAED + D+ +IT P+
Sbjct: 119 KHNGSLGVDGSVAFLFDRKGLIAISNEADFDTIFEIALENGAED-VKDEGESYEVITEPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+F ++++L G + ES+ + M P + + +A ++ KL++ L+ DV+ VYTNA
Sbjct: 178 EFTAVRDALAEQGIEFESAEVTMIPQNTVELEGKKAEQMLKLMDMLEDNDDVQNVYTNAD 237
Query: 240 IFD 242
I D
Sbjct: 238 IDD 240
>gi|386719677|ref|YP_006186003.1| hypothetical protein SMD_3319 [Stenotrophomonas maltophilia D457]
gi|384079239|emb|CCH13837.1| hypothetical protein SMD_3319 [Stenotrophomonas maltophilia D457]
Length = 243
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAVDKGLAVNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E ++Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVDYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F P + + + A+E GA+D ++ D I ++TSP F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAPGADEEAITEAAIEAGADDIVVYPDDGSIDVVTSPDAFN 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMVAAGHVADHAEITFRADNDIKVEGEVALQVKKLLDMLEDLDDVQDVYSNA 235
>gi|374314837|ref|YP_005061265.1| DNA-binding regulatory protein, YebC/PmpR family [Sphaerochaeta
pleomorpha str. Grapes]
gi|359350481|gb|AEV28255.1| DNA-binding regulatory protein, YebC/PmpR family [Sphaerochaeta
pleomorpha str. Grapes]
Length = 249
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 150/239 (62%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK I DAKRG+ T++++E+ VA G ++PDTN +LR A+ KA N
Sbjct: 1 MSGHSKWATIKHKKGIADAKRGQKFTKLIKEISVAAKMGGSDPDTNARLRTAVLKARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + Y E+ YEGY+ G AII+D +T+N+ RT S++R+
Sbjct: 61 MPKDNIDRAIKKGAGELGTSV--YYELTYEGYAPGGVAIIIDTLTDNKNRTASDVRSTLT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG L G V +MF+ G ++F + + ++ALE GA+D ++D+ I + TSP
Sbjct: 119 KSGGTLGATGCVSYMFQTKGIIIFDASKYTEEQIFEVALENGADDVTTNEDS-IEVTTSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F + +L+ GF+ ES+ I + + A K+ K+++ L++L DV++V+TN
Sbjct: 178 ADFANVLEALQAAGFEQESAEIEKIADQMVTLETERARKVLKIVDRLEELDDVQEVFTN 236
>gi|390957960|ref|YP_006421717.1| YebC/PmpR family DNA-binding regulatory protein [Terriglobus roseus
DSM 18391]
gi|390958300|ref|YP_006422057.1| YebC/PmpR family DNA-binding regulatory protein [Terriglobus roseus
DSM 18391]
gi|390412878|gb|AFL88382.1| DNA-binding regulatory protein, YebC/PmpR family [Terriglobus
roseus DSM 18391]
gi|390413218|gb|AFL88722.1| DNA-binding regulatory protein, YebC/PmpR family [Terriglobus
roseus DSM 18391]
Length = 246
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 148/240 (61%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK DAKRGK+ TR+++E+ VA G +PD N +LR AI A N
Sbjct: 1 MSGHSKWATIKHKKGAADAKRGKVFTRLIKEITVAAKQGGGDPDGNPRLRTAILAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQ+ + E ++Y E+ YEGY G A+I++ +T+NR R VS IR+ F+
Sbjct: 61 MPADNIKRAIQRGTGEL--EGLSYEEITYEGYGPGGVAVIIEVLTDNRNRAVSEIRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP--NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + GSV ++F G ++ +P ++ + ++ L+ GA+D L ++ + I T+
Sbjct: 119 KNGGNLGESGSVGYIFTKKG-VIVVPKEGADEDKITEIVLDAGADD-LSEEGDHWEIYTT 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +++++ GFK E + I M P T + +A + +LL L+ L D + +Y+N
Sbjct: 177 PKDFEAVRDAVTKAGFKPEHAEITMVPSTYQKLEGSQANAMMRLLEVLEDLDDTQNLYSN 236
>gi|451822919|ref|YP_007459193.1| hypothetical protein CDSE_0439 [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775719|gb|AGF46760.1| hypothetical protein CDSE_0439 [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 244
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 164/245 (66%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D K+G++ T+I+RE+ V A N G +P++N +LR A+EKA DAN
Sbjct: 1 MAGHSKWANIQHRKNRQDEKKGRLWTKIIREITVSAKNGGPDPESNAQLRAALEKASDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAI + + +++++NY E+ YEGY +NG+AIIV +T+N+++TVS +R++F
Sbjct: 61 IPKDNINRAIHRGSK--ESDSVNYEEINYEGYGINGSAIIVYTMTDNKVKTVSEVRHVFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL + GSV F+FK GQ +F + ++++AL+ E+ + ++ +
Sbjct: 119 KNGGNLGQNGSVSFLFKKLGQFVFPVDASIEKIMEIALQFDIEEIETTDNKSTEVLCHVN 178
Query: 180 KFIEIKNSL--EMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++ + E+T K +S IV++P I E++K+ KLL EL+ L DV+ V+TN
Sbjct: 179 DYFDLYDKFKNELTEIKF-NSDIVIKPINFIKLNPEESLKMHKLLLELENLEDVQSVHTN 237
Query: 238 ALIFD 242
A++ +
Sbjct: 238 AVLVE 242
>gi|403049512|ref|ZP_10903996.1| hypothetical protein SclubSAR_03968 [SAR86 cluster bacterium
SAR86D]
Length = 245
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DA RGK+ T+++RE+ VA G +PD N +LRLA++KA AN+
Sbjct: 1 MAGHSKWANIKHRKARQDASRGKVWTKVIREITVAAKGGPDPDDNPRLRLALDKANAANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
PK+NI RAI+K + + E+ EGY G AI+V+ +++NR RTVS++R+ F+K
Sbjct: 61 PKDNIKRAIEKGSGTGDTGALE--EIVLEGYGPGGVAIMVEAMSDNRNRTVSDVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL +GSV ++F G + + + +LD+ALE GA+D L+D+++ IITS S
Sbjct: 119 FGGNLGTDGSVSYLFNKIGIIHIAKSYSEEDILDIALEAGADD-LVDEEDYFEIITSSSD 177
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ SL+ + ++ + +R T++ + K+ K+++ + +L DV++V+TNA
Sbjct: 178 LENVLKSLKENNIENTNAELTLRAETSVSVDQEMSEKVLKIMDFMDELDDVQEVHTNA 235
>gi|424864685|ref|ZP_18288588.1| hypothetical protein NT02SARS_0353 [SAR86 cluster bacterium SAR86B]
gi|400759431|gb|EJP73613.1| hypothetical protein NT02SARS_0353 [SAR86 cluster bacterium SAR86B]
Length = 245
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 149/238 (62%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DAKRGK+ T+I+RE+ VA G +P N +LRLA++KA N+
Sbjct: 1 MAGHSKWANIKHRKARQDAKRGKVFTKIIREITVAAKGGPDPADNPRLRLALDKANSENM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
PK+ I RAIQK + + +I E+ +EGY G AI ++ +T+NR RTV+ +R+ F+K
Sbjct: 61 PKDTITRAIQKGSGTGETGDIE--EITFEGYGPGGIAIYIETVTDNRNRTVAEVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL +GSV ++F G + + ++D +E A+DF I++D I+TSPS
Sbjct: 119 FGGNLGTDGSVSYLFNKIGIIHLNKEFSEEEIMDFVIEYEADDF-IEEDEFYEIVTSPSS 177
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
I + ++ + ++ + +RP T ++ + + K+ KL+N + L DV++V+TNA
Sbjct: 178 LHAIVDKMKENNIDSINAELTLRPETTVLIDEEMSEKVIKLMNHMDDLDDVQEVHTNA 235
>gi|302338524|ref|YP_003803730.1| hypothetical protein Spirs_2014 [Spirochaeta smaragdinae DSM 11293]
gi|301635709|gb|ADK81136.1| protein of unknown function DUF28 [Spirochaeta smaragdinae DSM
11293]
Length = 248
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 147/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA+IK KK +DAKRGK T+I++E+ VA G +P+ N +LR A+ KA AN
Sbjct: 1 MSGHSKWASIKHKKGAIDAKRGKAFTKIIKEITVAARMGGGDPEANPRLRTAVLKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K ++ E ++Y+E+ YE Y G AI++D +T+N+ RT +++R+I
Sbjct: 61 MPKDNVERAIKKGTGDL--EGVDYVELTYEAYGPGGVAILIDALTDNKNRTAADVRSILT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL + G V ++F+ G + + + + + ++ALE GAED + D I ++T+P
Sbjct: 119 KGGGNLGESGCVSYLFQRKGIINYSAESYTEEAIFEVALEAGAEDVSTEGDT-IEVMTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F + +L+ GF+ E + + P + + D + K +L+ L DV+ V TN
Sbjct: 178 EDFEPVLKALQAAGFEEELAEVSKVPDSTVTLDDEKTRKALRLIERLDDHDDVQSVATN 236
>gi|392531870|ref|ZP_10279007.1| hypothetical protein CmalA3_14227 [Carnobacterium maltaromaticum
ATCC 35586]
Length = 241
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 150/243 (61%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRG+I +I RE+ +A+ G +P TN +LR+ I+KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGQIFQKISREIYMAVKSGGPDPSTNPQLRMMIDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +N+ RAI K + + + EN Y E+ YEGY NG A++V +T+NR RT +N+R FN
Sbjct: 61 MPNDNVKRAIAKGSQSGEGEN--YEEITYEGYGPNGIAVLVHTLTDNRNRTGTNVRVAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN---TKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGG+L + GSV +MF G L ++T+L LE G ED D I T
Sbjct: 119 KNGGSLGETGSVSYMFDRKGYLAIERRDLAVDEDTMLMSVLEAGGEDMET-SDEVFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPY-TNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
PS FI ++++LE +G+K + I M P TN + D A+ Q +L++L++ DV +V+
Sbjct: 178 EPSDFISVRDALEASGYKLAQAEITMVPQTTNELPADKRAL-FQTMLDKLEEDDDVSEVF 236
Query: 236 TNA 238
NA
Sbjct: 237 HNA 239
>gi|342213643|ref|ZP_08706366.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 780 str. F0422]
gi|341597731|gb|EGS40270.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 780 str. F0422]
Length = 243
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 153/243 (62%), Gaps = 7/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NIK +K DA + K+ T+I RE+ VA+ G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWSNIKHRKGKNDALKAKVTTKISREITVAVKAGGTDPTGNMRLKLALQKARENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAI K + + N NY E+ YEGY GAAI+V+ +T+NR R +++R+ F+
Sbjct: 61 IPKDNIQRAIDKG-AGAGDAN-NYEEITYEGYGPGGAAILVEVMTDNRNRAAADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL + GSV +MFK G + +P + TL LAL+ GAED + +D+ I T
Sbjct: 119 KRGGNLGESGSVNWMFKRKG-VFVIPQEGNDEETLTLLALDAGAEDIKV-EDDVFVIYTL 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + ++ +L + + I M P TN+ +A+ +Q++L+ L+ L DV+ VY N
Sbjct: 177 PDDYDAVEAALAEASIATDMAQITMVPDTNMELTGDDAVNMQRVLDMLEDLDDVQDVYHN 236
Query: 238 ALI 240
A++
Sbjct: 237 AIM 239
>gi|437999865|ref|YP_007183598.1| hypothetical protein CKBE_00332 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812791|ref|YP_007449244.1| conserved hypothetical protein of the PRK00110 family [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339099|gb|AFZ83521.1| hypothetical protein CKBE_00332 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778760|gb|AGF49640.1| conserved hypothetical protein of the PRK00110 family [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 241
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 152/241 (63%), Gaps = 5/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D K+GK+ T+I+RE+ VA G + + N +LR A+ KA AN
Sbjct: 1 MAGHSKWANIQHRKNRQDEKKGKLWTKIIREITVASRNGVTDTNYNFRLRAALSKASAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI +A+QK++ K N+ Y E+ YEGY + G+A +V +T+N+++T S IR+ F
Sbjct: 61 IPKDNINKAMQKSS---KESNL-YEEINYEGYGIEGSAFVVKALTDNKIKTASEIRHAFT 116
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KN G+L ++GSV F+F+ CG+ +F ++ + + ALE GAED + + I +
Sbjct: 117 KNEGSLGQDGSVSFLFRSCGKFIFSSAYQEEDIFNTALEFGAEDVIKIDETTIEVTCLSE 176
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+I++ ++ E ESS I+ P + + K+QKL+ +L+ L DV+ VYTNA+
Sbjct: 177 HYIKLCHAFENAKLIFESSDIITEPLIMVKLNHEKYTKIQKLILDLENLDDVQSVYTNAV 236
Query: 240 I 240
+
Sbjct: 237 L 237
>gi|449126239|ref|ZP_21762532.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola OTK]
gi|448938431|gb|EMB19362.1| YebC/PmpR family DNA-binding regulatory protein [Treponema
denticola OTK]
Length = 247
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ +A G +P TN +LR A+ KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISIAAKMGGGDPATNPRLRTAVLKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + +NY E+ YEGY G A++V+ +T+N+ RT +++RNIF
Sbjct: 61 MPKDNIERAIKKGTGELGA--VNYEELLYEGYGPGGVAVLVEVLTDNKNRTAASVRNIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL GSV +MF G + + + +++ ALE GAED + +D IT+ T P
Sbjct: 119 KSGGNLGATGSVAYMFNRKGVIEYDAEVVSEEAIMEAALEAGAED-IATEDGVITVTTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F + +L+ GF++ S+ + M P T + K K++++L++ DV+ V +N
Sbjct: 178 NDFASVLEALQEKGFESVSAAVSMVPDTYVALDVDTTQKALKMIDKLEEDDDVQTVSSN 236
>gi|346993836|ref|ZP_08861908.1| hypothetical protein RTW15_13077 [Ruegeria sp. TW15]
Length = 246
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 151/239 (63%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + E Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKS---VAGEGDEYEEIRYEGYGPNGVAVIVETMTDNRNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++++ + +T+ + A+E GAED +D I I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVVYQADAGDADTIFEAAIEAGAEDVESSEDGHI-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++ N+LE ++ES+ +V +P T + KL KL++ L+ DV++V TN
Sbjct: 177 TDLNDVSNALETALGESESTKLVWKPTTTTELGLEDMQKLMKLVDALEDDDDVQRVTTN 235
>gi|220927640|ref|YP_002504549.1| hypothetical protein Ccel_0181 [Clostridium cellulolyticum H10]
gi|254800643|sp|B8I4L5.1|Y181_CLOCE RecName: Full=Probable transcriptional regulatory protein Ccel_0181
gi|219997968|gb|ACL74569.1| protein of unknown function DUF28 [Clostridium cellulolyticum H10]
Length = 248
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 145/239 (60%), Gaps = 7/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKR+K DA RGKI T++ RE+++A+ G +P +N KL+ I K N
Sbjct: 1 MSGHSKWANIKRQKGAADAVRGKIFTKLGREIQIAVRMGGADPSSNSKLKDVIAKCKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R+I++ + + + NY E+ YEGY G A+I +C T+NR RT ++R+ F+
Sbjct: 61 MPNDNIQRSIKRASG--ETDGSNYEEITYEGYGPGGVAVICECTTDNRNRTAGDLRHYFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL + G V +MF G ++ N K N TL+ AL+ GAEDF D DN IIT
Sbjct: 119 KFGGNLGQSGCVSYMFNKKGVIVIEKNDKVNEETLMMEALDAGAEDFDSD-DNCYEIITD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVY 235
P+ F ++ +LE G++ + + M P T D E IK + KL+ L+ L DV VY
Sbjct: 178 PADFSTVREALEAKGYEFIEAEVSMIPTTTTKLTDPEQIKFMDKLIEALEDLDDVSNVY 236
>gi|367470987|ref|ZP_09470650.1| hypothetical protein PAI11_39910 [Patulibacter sp. I11]
gi|365813949|gb|EHN09184.1| hypothetical protein PAI11_39910 [Patulibacter sp. I11]
Length = 249
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWA IK KK IVD++RGK+ T++ R + VA G +P N L LA++KA DA+
Sbjct: 1 MAGHSKWAGIKHKKAIVDSRRGKLFTKLARHITVAAKEGGGDPVGNAALALAVQKAKDAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K + + N+ V YEGY G A++V+ +T+NR RT S +R++F+
Sbjct: 61 MPKDNIQRAIDKG-TGAGADAANFEAVMYEGYGPGGVAVLVEALTDNRNRTGSEVRHMFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GG+L + GSV ++F G ++ + L +A+E GAED D D +I+ P
Sbjct: 120 KHGGSLGEPGSVAYLFDKKGVIVVDGDKHDEDDLMVAIEAGAEDIEED-DGSFEVISEPG 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++ +L+ G + E + +V RP + +A KL KL++ L DV +V+ N
Sbjct: 179 SLTAVREALDAAGIEYERAELVYRPQVRTPLDEEQATKLAKLIDTLDDNDDVSEVHAN 236
>gi|423109065|ref|ZP_17096760.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5243]
gi|423115025|ref|ZP_17102716.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5245]
gi|376383259|gb|EHS95987.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5243]
gi|376383900|gb|EHS96627.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5245]
Length = 246
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISF-EQGDEDAIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|433678719|ref|ZP_20510544.1| hypothetical protein BN444_02778 [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430816156|emb|CCP41055.1| hypothetical protein BN444_02778 [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 243
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 154/236 (65%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P N +LR+A++K L +N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARAGGGDPSNNPRLRVAMDKGLASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y E+RYEGY++ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEIRYEGYALGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F + + + A+E GA+D ++ +D I ++TS F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGADEEAITEAAIEAGADDIVVYPEDGAIDVLTSADAFH 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMQVAGLVADHAEISFRADNDIAVEGDTALQVRKLLDMLEDLDDVQAVYSNA 235
>gi|307718819|ref|YP_003874351.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM
6192]
gi|306532544|gb|ADN02078.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM
6192]
Length = 246
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA I+ KK +DAKRGK+ T++++E+ VA G +P+ N +LR AI KA AN
Sbjct: 1 MSGHSKWATIRHKKAAMDAKRGKVFTKLIKEISVAARTGGGDPEANPRLRTAILKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI+K + E +Y E+ YE Y G AII++ +T+N+ RT S +R+I +
Sbjct: 61 MPKENIERAIKKGTGEL--EGADYTEIVYEAYGPGGVAIIIEALTDNKNRTASEVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG+L + G V ++FK G + F ++ +++ ALE GAED D + I ++T P
Sbjct: 119 KHGGSLGETGCVSYLFKKRGLITFDATKYTEDEIIEAALEAGAEDVSSDGE-VIEVLTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S F E++ L GF+ E++ I + P I A K+ KL+ L+ DV+ V TN
Sbjct: 178 SSFEEVQQGLTEKGFEYETAEISLIPDARITVDKETAEKVLKLIEALEDNDDVQSVSTNL 237
Query: 239 LIFD 242
+ D
Sbjct: 238 ELPD 241
>gi|21232457|ref|NP_638374.1| hypothetical protein XCC3027 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767459|ref|YP_242221.1| hypothetical protein XC_1131 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990565|ref|YP_001902575.1| hypothetical protein xccb100_1169 [Xanthomonas campestris pv.
campestris str. B100]
gi|384428970|ref|YP_005638330.1| hypothetical protein XCR_3350 [Xanthomonas campestris pv. raphani
756C]
gi|33517132|sp|Q8P6E3.1|Y3027_XANCP RecName: Full=Probable transcriptional regulatory protein XCC3027
gi|81306561|sp|Q4UXM2.1|Y1131_XANC8 RecName: Full=Probable transcriptional regulatory protein XC_1131
gi|226696249|sp|B0RPY2.1|Y1169_XANCB RecName: Full=Probable transcriptional regulatory protein
xcc-b100_1169
gi|21114239|gb|AAM42298.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572791|gb|AAY48201.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167732325|emb|CAP50517.1| Conserved hypothetical protein [Xanthomonas campestris pv.
campestris]
gi|341938073|gb|AEL08212.1| conserved hypothetical protein [Xanthomonas campestris pv. raphani
756C]
Length = 242
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 149/235 (63%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P N +LR A++K L +N+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKIFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSSNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y EVRYEGY+ G A+IVDC+T+NR+R V+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRAVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ +GSV FMFK G L F ++ + + A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTDGSVAFMFKRLGVLSFAAGADEDAVTEAAIEAGADDVVVYPEDGAIDVLTAPDTFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++K +L GF+ + I R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVKQALATAGFEPAHAEITFRAENDIAVDGDTAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|429084820|ref|ZP_19147811.1| FIG000859: hypothetical protein [Cronobacter condimenti 1330]
gi|426546059|emb|CCJ73852.1| FIG000859: hypothetical protein [Cronobacter condimenti 1330]
Length = 246
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFDAG-DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|333978128|ref|YP_004516073.1| hypothetical protein Desku_0663 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821609|gb|AEG14272.1| UPF0082 protein yeeN [Desulfotomaculum kuznetsovii DSM 6115]
Length = 242
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 146/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK VDA+RGK+ TR+ RE+ VA G +PD N +L+ AI++A +AN
Sbjct: 1 MSGHSKWSTIKRKKAKVDAQRGKLFTRLSREIIVAARLGGGDPDANPRLKAAIQRAKEAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP NI RAIQK + NY E+ YEGY G A++++ +T+NR RT IR++F+
Sbjct: 61 IPNENIQRAIQKGTGELGA--ANYEELIYEGYGPGGVAVMMEIMTDNRNRTAGEIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
++GGNL + G V +MF G ++ + ++ L+ ALE GAED ++D + IIT+P
Sbjct: 119 RHGGNLGEAGCVSWMFSKKGVIVVEKDGLDEDELMLTALEAGAEDMKTEED-EFEIITAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F +++ L G + + M P + + EA ++ +L+ L+ D+++VY N
Sbjct: 178 EDFEKVRQVLVEKGIPIAEAQVTMVPQSTVKLAGQEAEQMMRLMEALEDHDDIQEVYAN 236
>gi|440733547|ref|ZP_20913258.1| hypothetical protein A989_17933 [Xanthomonas translucens DAR61454]
gi|440360774|gb|ELP98032.1| hypothetical protein A989_17933 [Xanthomonas translucens DAR61454]
Length = 243
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 152/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P N +LR+A++K L +N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARAGGGDPSNNPRLRVAMDKGLASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F + + + A+E GA+D ++ +D I ++TS F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGADEEAITEAAIEAGADDIVVYAEDGAIDVLTSADAFH 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K++++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMQAAGLSADHAEISFRADNDIAVEGDTALQVRKLLDMLEDLDDVQAVYSNA 235
>gi|254511970|ref|ZP_05124037.1| conserved hypothetical protein TIGR01033 [Rhodobacteraceae
bacterium KLH11]
gi|221535681|gb|EEE38669.1| conserved hypothetical protein TIGR01033 [Rhodobacteraceae
bacterium KLH11]
Length = 246
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 151/239 (63%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + E Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKS---VAGEGDEYEEIRYEGYGPNGVAVIVETMTDNRNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++++ + +T+ + A+E GAED +D I I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVVYQADAGDADTIFEAAIEAGAEDVESSEDGHI-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++ N+LE ++ES+ +V +P T + KL KL++ L+ DV++V TN
Sbjct: 177 TDLNDVSNALEGALGESESTKLVWKPTTTTELGLEDMQKLMKLVDALEDDDDVQRVTTN 235
>gi|354724117|ref|ZP_09038332.1| hypothetical protein EmorL2_14742 [Enterobacter mori LMG 25706]
Length = 246
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|323144091|ref|ZP_08078732.1| DNA-binding regulatory protein, YebC/PmpR family [Succinatimonas
hippei YIT 12066]
gi|322416133|gb|EFY06826.1| DNA-binding regulatory protein, YebC/PmpR family [Succinatimonas
hippei YIT 12066]
Length = 252
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 145/249 (58%), Gaps = 9/249 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
M+GHSKWANI+ +K DAKRGKI T+++RE+ A G ++ N +LR A+ AL N
Sbjct: 1 MSGHSKWANIRFRKAAQDAKRGKIFTKLIREITTAARMGGGDESSNPRLRSAVVAALAQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RAI++ E + + YEGY V G A++V+C+T+NR RT S +R+ F
Sbjct: 61 MTRDTIKRAIERGVGG--GEGTDLETIVYEGYGVGGVAVMVECMTDNRNRTASEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK------KNTLLDLALEKGAEDFLIDKDNKIT 173
K GGNL GSV ++F G + F+P+ + +D+ALE GA+D + ++D I
Sbjct: 119 KFGGNLGSTGSVNYLFTKKGVVSFIPDESGKMAIDEEKAMDIALEAGADDVVTNEDGSID 178
Query: 174 IITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKK 233
+ TSP F + ++ K +++ + M P T A+K ++++ L+ L DV++
Sbjct: 179 VYTSPEAFPSVVDAFNDNNIKPDNAQVTMTPSTEAALDADTAVKFMRMIDALEDLDDVQE 238
Query: 234 VYTNALIFD 242
VY NA I D
Sbjct: 239 VYHNASIPD 247
>gi|365840288|ref|ZP_09381486.1| DNA-binding regulatory protein, YebC/PmpR family [Anaeroglobus
geminatus F0357]
gi|364561864|gb|EHM39740.1| DNA-binding regulatory protein, YebC/PmpR family [Anaeroglobus
geminatus F0357]
Length = 246
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKRKKGKNDAVRGKITTKISREITIAVRMGGADPTGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK NI RA+QK ++ ++ Y E+ YEGY G A+ + +T+NR RT + +R+IF+
Sbjct: 61 IPKENINRAVQKGAGTLEGQS--YEEIVYEGYGPAGVALTLSVLTDNRNRTAAEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ + G V +MFK+ G + ++ L+++ALE GA+D D D + IIT P
Sbjct: 119 KYGGNMGETGCVAWMFKNRGVFIVAGEAADEDRLMEIALEAGADDIRADGD-EYEIITVP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++ +L E + I M P + +A KL+ +++ L DV+ VY N
Sbjct: 178 EAYDDVEKALADNRIPVEHAQITMVPDNFVALGKDDAQKLENMIDAFDDLDDVQDVYHNG 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|254362417|ref|ZP_04978526.1| hypothetical protein MHA_2024 [Mannheimia haemolytica PHL213]
gi|261494086|ref|ZP_05990589.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496073|ref|ZP_05992483.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452745061|ref|ZP_21944899.1| hypothetical protein F388_08314 [Mannheimia haemolytica serotype 6
str. H23]
gi|153094006|gb|EDN74922.1| hypothetical protein MHA_2024 [Mannheimia haemolytica PHL213]
gi|261308323|gb|EEY09616.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310252|gb|EEY11452.1| dATP pyrophosphohydrolase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452086901|gb|EME03286.1| hypothetical protein F388_08314 [Mannheimia haemolytica serotype 6
str. H23]
Length = 246
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + +N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTSSNPRLRAAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + N ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVANADEDALTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|328948462|ref|YP_004365799.1| hypothetical protein Tresu_1602 [Treponema succinifaciens DSM 2489]
gi|328448786|gb|AEB14502.1| UPF0082 protein yeeN [Treponema succinifaciens DSM 2489]
Length = 247
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 151/238 (63%), Gaps = 5/238 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK K I DAKRG + T+ ++E+ +A G +PD+N +LR A+ KA A+
Sbjct: 1 MSGHSKWSTIKHAKGIADAKRGALFTKFIKEISIAAKMGGGDPDSNPRLRTAMLKAKAAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + ++Y E+ YEGY+ G A++VD +T+N+ R +++RNIFN
Sbjct: 61 MPKDNIERAIKKGTGELGA--VSYEELVYEGYAPGGVAVLVDVLTDNKNRAAADVRNIFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL GS MF+ G + + ++ ++ +A+E GAED ++++D IT+ T P
Sbjct: 119 KNGGNLGTTGSTSRMFERKGVIEYDAEKVSEDDVMSVAVEAGAED-VVNEDGVITVTTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+ F + +L+ ++ S+ + M P+ A K+QKLL++L++ DV+ VY+
Sbjct: 178 ASFDAVLEALQSKEWETLSAAVSMVPFNYTAVDVETAKKVQKLLDKLEENDDVQNVYS 235
>gi|375261572|ref|YP_005020742.1| hypothetical protein KOX_23935 [Klebsiella oxytoca KCTC 1686]
gi|397658679|ref|YP_006499381.1| hypothetical protein A225_3680 [Klebsiella oxytoca E718]
gi|421726868|ref|ZP_16166036.1| hypothetical protein KOXM_15578 [Klebsiella oxytoca M5al]
gi|423103676|ref|ZP_17091378.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5242]
gi|423124530|ref|ZP_17112209.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5250]
gi|365911050|gb|AEX06503.1| hypothetical protein KOX_23935 [Klebsiella oxytoca KCTC 1686]
gi|376385318|gb|EHS98039.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5242]
gi|376399975|gb|EHT12588.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5250]
gi|394346945|gb|AFN33066.1| hypothetical protein YebC [Klebsiella oxytoca E718]
gi|410372408|gb|EKP27121.1| hypothetical protein KOXM_15578 [Klebsiella oxytoca M5al]
Length = 246
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 145/243 (59%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFSKKGVISF-EKGDEDAIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|410657500|ref|YP_006909871.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
DCA]
gi|410660537|ref|YP_006912908.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
CF]
gi|409019855|gb|AFV01886.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
DCA]
gi|409022893|gb|AFV04923.1| DNA-binding regulatory protein, YebC/PmpR family [Dehalobacter sp.
CF]
Length = 251
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 149/243 (61%), Gaps = 10/243 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA +G+I T++ RE+ VA G +P+ N +L++AI+ A AN
Sbjct: 1 MSGHSKWANIKHKKAKTDAIKGRIFTKLAREIMVAARAGGADPNGNFRLKIAIDNAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQK E NY E+RYEGY G AI+V+ +T+NR RT S +R++F+
Sbjct: 61 LPNDNIQRAIQKGAG--AGEGANYEELRYEGYGPGGVAIMVELMTDNRNRTASEMRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT----KKNTLLDLALEKGAEDFLIDKDNKITII 175
KNGGNL + GSV +MF GQ L +P ++ ++ LALE GAED + +D I
Sbjct: 119 KNGGNLGETGSVSWMFTEKGQ-LDVPKEDLKMDEDEIMLLALEAGAED-VASEDESYEIF 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKV 234
T P E++ L + E++ I + P + D E A K+ KL++ L+ DV+KV
Sbjct: 177 TEPDSMQEVRQVLLDSKIPIENAAINLIPVNRVEIADIEQAKKIIKLIDSLESHDDVQKV 236
Query: 235 YTN 237
YTN
Sbjct: 237 YTN 239
>gi|386346903|ref|YP_006045152.1| hypothetical protein [Spirochaeta thermophila DSM 6578]
gi|339411870|gb|AEJ61435.1| UPF0082 protein yeeN [Spirochaeta thermophila DSM 6578]
Length = 246
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA I+ KK +DAKRGK+ T++++E+ VA G +P+ N +LR AI KA AN
Sbjct: 1 MSGHSKWATIRHKKAAMDAKRGKVFTKLIKEISVAARTGGGDPEANPRLRTAILKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI+K + E +Y E+ YE Y G AII++ +T+N+ RT S +R+I +
Sbjct: 61 MPKENIERAIKKGTGEL--EGADYTEIVYEAYGPGGVAIIIEALTDNKNRTASEVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG+L + G V ++FK G + F ++ +++ ALE GAED D + I ++T P
Sbjct: 119 KHGGSLGETGCVSYLFKKRGLITFDATKYTEDEIIEAALEAGAEDVSSDGE-VIEVLTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S F E++ L GF+ E++ I + P I A K+ +L+ L+ DV+ V TN
Sbjct: 178 SSFEEVQQGLTEKGFEYETAEISLIPDARITVDKETAEKVLRLIEALEDNDDVQSVSTNL 237
Query: 239 LIFD 242
+ D
Sbjct: 238 ELPD 241
>gi|115377304|ref|ZP_01464512.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|310823013|ref|YP_003955371.1| hypothetical protein STAUR_5782 [Stigmatella aurantiaca DW4/3-1]
gi|115365682|gb|EAU64709.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|309396085|gb|ADO73544.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 248
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 141/238 (59%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH++W+ IKR+K + A +GK+ T+I++E+ VA G NPD N +LR AI A +AN
Sbjct: 1 MSGHNRWSKIKRQKAAMGASKGKLYTKIIKEITVAARLGGGNPDGNARLRAAIGAAREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + RAI+K ++ E+ Y EV YEGY G A++V+C+T+NR RT S++R +FN
Sbjct: 61 MPSDTVARAIKKGTGELEGES--YEEVTYEGYGPGGVAVMVECLTDNRNRTASDVRILFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL EG+V +MF G + P ++ +++ A+E GAED + + T+P
Sbjct: 119 KGGGNLGTEGAVGWMFHKKGVITVKPGLTEDQVMEKAIEAGAEDVIPLGAEGFEVRTAPV 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ +SLE G K P T + + A K+ KL++ L+ DV+ V+ N
Sbjct: 179 DLHTVASSLEAAGLKLGEQKWSFFPQTTVKLEGDNARKMLKLMDSLEDNDDVQNVHAN 236
>gi|296112955|ref|YP_003626893.1| hypothetical protein MCR_0733 [Moraxella catarrhalis RH4]
gi|416155528|ref|ZP_11603940.1| hypothetical protein E9Y_00651 [Moraxella catarrhalis 101P30B1]
gi|416217329|ref|ZP_11624278.1| hypothetical protein E9G_05039 [Moraxella catarrhalis 7169]
gi|416222470|ref|ZP_11626121.1| hypothetical protein E9K_05054 [Moraxella catarrhalis 103P14B1]
gi|416230075|ref|ZP_11628223.1| hypothetical protein E9M_05798 [Moraxella catarrhalis 46P47B1]
gi|416232611|ref|ZP_11629006.1| hypothetical protein E9O_00390 [Moraxella catarrhalis 12P80B1]
gi|416238615|ref|ZP_11631495.1| hypothetical protein E9Q_04394 [Moraxella catarrhalis BC1]
gi|416241232|ref|ZP_11632613.1| hypothetical protein E9S_00330 [Moraxella catarrhalis BC7]
gi|416247675|ref|ZP_11635858.1| hypothetical protein E9U_07636 [Moraxella catarrhalis BC8]
gi|416250700|ref|ZP_11637380.1| hypothetical protein E9W_05929 [Moraxella catarrhalis CO72]
gi|416254542|ref|ZP_11638808.1| hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
gi|421779771|ref|ZP_16216263.1| hypothetical protein MCRH_0799 [Moraxella catarrhalis RH4]
gi|295920649|gb|ADG61000.1| conserved hypothetical protein [Moraxella catarrhalis BBH18]
gi|326561180|gb|EGE11545.1| hypothetical protein E9G_05039 [Moraxella catarrhalis 7169]
gi|326561619|gb|EGE11957.1| hypothetical protein E9M_05798 [Moraxella catarrhalis 46P47B1]
gi|326563982|gb|EGE14231.1| hypothetical protein E9K_05054 [Moraxella catarrhalis 103P14B1]
gi|326567632|gb|EGE17740.1| hypothetical protein E9O_00390 [Moraxella catarrhalis 12P80B1]
gi|326567932|gb|EGE18029.1| hypothetical protein E9Q_04394 [Moraxella catarrhalis BC1]
gi|326569487|gb|EGE19547.1| hypothetical protein E9U_07636 [Moraxella catarrhalis BC8]
gi|326572749|gb|EGE22735.1| hypothetical protein E9S_00330 [Moraxella catarrhalis BC7]
gi|326574031|gb|EGE23980.1| hypothetical protein E9W_05929 [Moraxella catarrhalis CO72]
gi|326577002|gb|EGE26897.1| hypothetical protein E9Y_00651 [Moraxella catarrhalis 101P30B1]
gi|326577472|gb|EGE27356.1| hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
gi|407813481|gb|EKF84263.1| hypothetical protein MCRH_0799 [Moraxella catarrhalis RH4]
Length = 249
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 152/239 (63%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA +GKI T+I+RE+ A G+ +P N +LR +EKA AN
Sbjct: 1 MAGHSKWANIKHRKAKQDAAKGKIFTKIIREIVSAAKSGDPDPANNPRLRAVLEKANAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ N+N+ E+ YEGY + G A+IV+ +T+N RTV +R+ F+
Sbjct: 61 MTKDVIKRAIERGAGGGDNDNME--EITYEGYGIGGVAVIVETMTDNVNRTVGEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL GSV ++F G+++F + +++++++ALE GAED D ++ + +ITSP+
Sbjct: 119 KNGGNLGTSGSVAYLFSKRGEIIFHDLSLEDSIMEIALEAGAEDIENDGES-LLVITSPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F + ++L G S + M P T + +A K+ K+++ L+ L DV++VYTN
Sbjct: 178 DFGTVVDALIAAGLTPNSMEVTMSPSTTADIDNIDDAQKVLKMIDMLEDLDDVQEVYTN 236
>gi|325295278|ref|YP_004281792.1| yeeN [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065726|gb|ADY73733.1| UPF0082 protein yeeN [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 247
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 148/240 (61%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGKI T++ RE+ VA G +P+TN +LR AIE+A N
Sbjct: 1 MAGHSKWANIRHRKAAQDAKRGKIYTKLAREITVAAREGGGDPETNPRLRAAIERARKFN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ I E Y EV YEGY G AIIV C+T+NR RT + +R+ F+
Sbjct: 61 MPKENIERAIKRGTGEIAGEA--YEEVTYEGYGPGGVAIIVKCLTDNRNRTAAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP--NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V +MF+ G ++ +P N ++T++ +E GA+D ++ +++ + T
Sbjct: 119 KHGGNLGTSGCVSWMFERKG-IITIPAENYDEDTVMMAVIEAGADD-VVKEESYFVVYTQ 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+++ ++ G + E S + + P + A+K+ KLL L+ L DV++VY+N
Sbjct: 177 AQDLEDVRKAILDAGLEIEESKLDLIPQNTTRVEGETALKVLKLLEALEDLDDVQEVYSN 236
>gi|348026291|ref|YP_004766096.1| hypothetical protein MELS_1047 [Megasphaera elsdenii DSM 20460]
gi|341822345|emb|CCC73269.1| UPF0082 protein HMPREF0889_0963 [Megasphaera elsdenii DSM 20460]
Length = 244
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 149/242 (61%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RGKI T+I RE+ +A+ G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKRKKGKNDAIRGKITTKIGREITIAVRMGGPDPVGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E NY E+ YEGY G A+ V+ +T+NR R + +R+ F+
Sbjct: 61 IPKDNIKRAIQKGAG--ATEGQNYEEIVYEGYGPAGVAVTVNVLTDNRNRAAAAVRHEFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN---TKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K+GGNL G V +MF + G +F+ N ++ ++++AL+ GA+D + D IIT
Sbjct: 119 KSGGNLGATGCVSWMFHNTG--IFVVNRDQADEDQIMEVALDAGADDVKV-SDEDYEIIT 175
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++ +L + E + I M P I +A K+++ ++ L +L DV+ VY
Sbjct: 176 TPEAFDAVEKALADNNIETEHASITMVPENTIKLTGEDAEKMERFVDALDELDDVQDVYH 235
Query: 237 NA 238
NA
Sbjct: 236 NA 237
>gi|365849942|ref|ZP_09390410.1| DNA-binding regulatory protein, YebC/PmpR family [Yokenella
regensburgei ATCC 43003]
gi|364568267|gb|EHM45912.1| DNA-binding regulatory protein, YebC/PmpR family [Yokenella
regensburgei ATCC 43003]
Length = 246
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAASNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDVIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|380513595|ref|ZP_09857002.1| hypothetical protein XsacN4_20328 [Xanthomonas sacchari NCPPB 4393]
Length = 244
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 151/235 (64%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P N +LR+A++K L +N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARAGGGDPSNNPRLRVAMDKGLASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ +GSV FMFK G L F + + + A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTDGSVAFMFKRLGVLSFAAGADEEKITEAAIEAGADDIVVYPEDGAIDVLTAPEAFQ 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+K++++ G A+ + I R +I A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 AVKDAMDAAGLAADHAEITFRADNDIAVDGDTAVQVRKLLDMLEDLDDVQNVYSN 234
>gi|206889587|ref|YP_002249658.1| hypothetical protein THEYE_A1868 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|226696157|sp|B5YHS2.1|Y1868_THEYD RecName: Full=Probable transcriptional regulatory protein
THEYE_A1868
gi|206741525|gb|ACI20582.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 251
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 147/240 (61%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWA IK KK VDAK+GKI T++++E+ VA G +P+ N +LR+AIEKA + N
Sbjct: 1 MAGHSKWAQIKHKKAQVDAKKGKIFTKLVKEISVAARLGGGDPEKNPRLRVAIEKAREVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI K + Y EV YEGY G AI+++ +T+N+ RTVS IR++ +
Sbjct: 61 MPMDNIKRAIMKGTGELAG--TTYEEVIYEGYGPGGVAILIEAMTDNKNRTVSEIRHLLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLID-KDNKITIITS 177
K+GG+L + G V ++F+ G +L T ++TL+ +ALE G ED D K+ II S
Sbjct: 119 KHGGSLGESGCVSWIFEKKGYILVDKKTIDEDTLISVALEAGVEDVKNDPKEENYEIIVS 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + ++K +E G + + M P I + +A K+ KL++ L+ DV+ VY N
Sbjct: 179 PEQLNQVKTIIEKAGIPVSFAQVTMLPKNYISIEGEDAEKMLKLMDALEDHDDVQNVYAN 238
>gi|448242554|ref|YP_007406607.1| hypothetical protein, UPF0082 family [Serratia marcescens WW4]
gi|445212918|gb|AGE18588.1| hypothetical protein, UPF0082 family [Serratia marcescens WW4]
gi|453065269|gb|EMF06232.1| hypothetical protein F518_09243 [Serratia marcescens VGH107]
Length = 247
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 149/243 (61%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +PD+N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +++ N + YEGY G A++++C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTMNRAIARGVGG--DDDTNMETIIYEGYGPGGTAVMIECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P ++++++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFTKKGVITYAPGLDEDSVMEAALEAGAEDIVTYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+K++L GF+AE++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 179 SLGAVKDALTAAGFEAEAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|440287187|ref|YP_007339952.1| DNA-binding regulatory protein, YebC/PmpR family
[Enterobacteriaceae bacterium strain FGI 57]
gi|440046709|gb|AGB77767.1| DNA-binding regulatory protein, YebC/PmpR family
[Enterobacteriaceae bacterium strain FGI 57]
Length = 246
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+ + + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADEAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|359414383|ref|ZP_09206848.1| UPF0082 protein yeeN [Clostridium sp. DL-VIII]
gi|357173267|gb|EHJ01442.1| UPF0082 protein yeeN [Clostridium sp. DL-VIII]
Length = 246
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T+I +E+ +A+ N G N DTN KLR + KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKTDAKRGKIFTKIGKEIVMAVKNGGANQDTNAKLRDVVAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I +AI+K + + + +NY + YEGY NG A+IV+ +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTISKAIKKASGELSS--VNYENIVYEGYGPNGVAVIVETLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ G V FMF+ G+++ K + ++ +AL+ GAEDF D+D + T+P
Sbjct: 119 KGGGNMGTTGCVSFMFQEKGEIVIEKVDKDEEEMMMMALDAGAEDFSADEDEVFVVTTAP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +++ +LE G + + + M P T + +A K QK+L+ L DV+ VY NA
Sbjct: 179 EDFGQVREALEAQGVEFLEASVKMIPDTYTAIDEADAKKFQKMLDLLDDDDDVQDVYHNA 238
>gi|296132695|ref|YP_003639942.1| hypothetical protein TherJR_1177 [Thermincola potens JR]
gi|296031273|gb|ADG82041.1| protein of unknown function DUF28 [Thermincola potens JR]
Length = 250
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 11/248 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA++GKI T++ +EL VA+ G +P+ N +L+ I+K +AN
Sbjct: 1 MAGHSKWANIKHRKAKQDAQKGKIFTKLGKELIVAVKQGGGDPEANPRLKAVIQKCREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R I K + +NY E+ YEGY G A++++ T+NR RT IR++F+
Sbjct: 61 MPMDNINRTIAKATGELAG--VNYEEIVYEGYGPGGVAVLLNVTTDNRNRTAGEIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT-----LLDLALEKGAEDFLIDKDNKITI 174
K+GGNL + G V +MF++ G L N ++ T L+ L L+ GAED + ++D+ I I
Sbjct: 119 KHGGNLGESGCVAWMFENKG--LITLNKEEVTMDGDDLMLLVLDAGAED-MKEEDDMIEI 175
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
IT+P ++K L G K E + + M P + + + EA+K+ KL++ L+ DV+ V
Sbjct: 176 ITAPEDLHKVKEVLTAQGLKPEVAELTMLPKSTVAVQGDEAVKMMKLMDLLEDHDDVQAV 235
Query: 235 YTNALIFD 242
Y N I D
Sbjct: 236 YANFEISD 243
>gi|329296284|ref|ZP_08253620.1| hypothetical protein Pstas_06134 [Plautia stali symbiont]
Length = 251
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDAGSNPRLRAAMDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMR----TVSNIR 115
+ ++ + RAI + + N+ I YEGY G+A++V+C+++NR R TV +R
Sbjct: 61 MTRDTMNRAIARGVGGEDDSNMETI--IYEGYGPGGSAVMVECLSDNRNRNRNRTVGEVR 118
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+ F+K GGNL +GSV ++F G + F P ++ +++ ALE GAED + D I +
Sbjct: 119 HAFSKTGGNLGTDGSVSYLFSKKGVISFAPGQDEDAVMEAALEAGAEDVVSYDDGAIDVF 178
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+ + ++++LE TG KA+S+ + M P T A KL +L++ L+ DV++VY
Sbjct: 179 TAWEELGSVRDALEATGLKADSAEVSMIPSTKAELDAETAPKLLRLIDMLEDCDDVQEVY 238
Query: 236 TNALIFD 242
N I D
Sbjct: 239 HNGEISD 245
>gi|423120949|ref|ZP_17108633.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5246]
gi|376395579|gb|EHT08225.1| UPF0082 protein yebC [Klebsiella oxytoca 10-5246]
Length = 246
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDVASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISFEAG-DEDVIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|222099181|ref|YP_002533749.1| hypothetical protein CTN_0207 [Thermotoga neapolitana DSM 4359]
gi|221571571|gb|ACM22383.1| Hypothetical Protein CTN_0207 [Thermotoga neapolitana DSM 4359]
Length = 254
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 155/240 (64%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ KI T+++RE+ VA G NP+TN +LR AIE+A N
Sbjct: 2 MSGHNKWANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNPETNPRLRAAIERARAEN 61
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI +AI++ + E ++Y EV YEGY+ G A+ + +T+N+ RT +R++F+
Sbjct: 62 MPKENIEKAIKRGTGEL--EGVDYQEVVYEGYAPGGVAVYIRALTDNKNRTAQELRHLFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K+GG+L++ GSV ++F+ G + + K+ L+ LA++ GAED + D ++ I IIT+
Sbjct: 120 KHGGSLAESGSVSWIFERKGVIEIAKDKVKDLEELMMLAIDAGAED-IKDTEDPIQIITA 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P E+K LE G++ ++ + P + +A K+ +LLN L+ + DV++VY+N
Sbjct: 179 PEDLSEVKRQLEEAGYEVDAK-VTFIPKNTVRVTGKDAEKVLELLNALEDMDDVQEVYSN 237
>gi|332298168|ref|YP_004440090.1| hypothetical protein Trebr_1536 [Treponema brennaborense DSM 12168]
gi|332181271|gb|AEE16959.1| UPF0082 protein yeeN [Treponema brennaborense DSM 12168]
Length = 246
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ +A G +P +N +LR A+ KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISIAARMGGGDPGSNPRLRTAMLKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + E YEGY G AI+V+ +T+N R +N+RNIF+
Sbjct: 61 MPKDNIERAIKKGTGELGG--AIFEEKLYEGYGPGGVAILVEVLTDNNNRAAANVRNIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL GSV +MF G + + ++ +++ ALE GAED ++ +D +T+ T P
Sbjct: 119 KTGGNLGATGSVAYMFNRKGVIEYDAEAVSEDEVMEAALEAGAED-IVSEDGVVTVTTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRP--YTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
S F + +L+ G+++ S+ + M P Y+ I + A K+QKL++ L++ DV+ VY+
Sbjct: 178 SAFESVLEALQNKGYESVSAEVAMVPDMYSAIDMET--ATKVQKLIDRLEEDDDVQNVYS 235
Query: 237 NA 238
NA
Sbjct: 236 NA 237
>gi|424790607|ref|ZP_18217134.1| hypothetical protein XTG29_00769 [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422797930|gb|EKU26109.1| hypothetical protein XTG29_00769 [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 241
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 152/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P N +LR+A++K L +N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARAGGGDPSNNPRLRVAMDKGLASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F + + + A+E GA+D ++ +D I ++TS F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGADEEAITEAAIEAGADDIVVYPEDGAIDVLTSADAFH 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K++++ G A+ + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMQAAGLVADHAEISFRADNDIAVEGDTALQVRKLLDMLEDLDDVQAVYSNA 235
>gi|295695623|ref|YP_003588861.1| hypothetical protein [Kyrpidia tusciae DSM 2912]
gi|295411225|gb|ADG05717.1| protein of unknown function DUF28 [Kyrpidia tusciae DSM 2912]
Length = 247
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 149/247 (60%), Gaps = 9/247 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+R+K DA RG++ T++ RE+ A G+NP+TN +L+ AIE+A AN
Sbjct: 1 MSGHSKWHNIQRRKGKQDAVRGQLFTKMSREIYAATRQGGSNPETNYRLKTAIERARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P ++I R I K N+ E +NY E+ YEGY GAA++V +T+NR RT + IR+IF+
Sbjct: 61 MPMDSIQRTIDKAAGNV--EGVNYEEMFYEGYGPGGAAVMVQLLTDNRNRTAAEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
K GG+L + G V +MF G + P ++ + ++ ALE GAEDF ++D + I
Sbjct: 119 KRGGSLGESGCVAWMFDRKGVIEISREGFPGSEDDAMM-AALEAGAEDFTAEED-RYVIT 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
+P + E++ +LE G + + P T + + EA ++ LL L++ DV+ V+
Sbjct: 177 VAPEQLREVRENLEKAGVPIAGAEVTFVPQTTVNLEGDEAQRMVDLLEALEEHDDVQNVF 236
Query: 236 TNALIFD 242
+N + D
Sbjct: 237 SNVDLSD 243
>gi|365971080|ref|YP_004952641.1| protein YebC [Enterobacter cloacae EcWSU1]
gi|365749993|gb|AEW74220.1| YebC [Enterobacter cloacae EcWSU1]
Length = 246
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAASNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGG--DEDANMETIIYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDVIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|388258812|ref|ZP_10135987.1| hypothetical protein O59_003208 [Cellvibrio sp. BR]
gi|387937571|gb|EIK44127.1| hypothetical protein O59_003208 [Cellvibrio sp. BR]
Length = 238
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 137/231 (59%), Gaps = 2/231 (0%)
Query: 10 IKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAI 69
+K +K DAKR KI T+I+REL VA G NP N +LR A+EKA N+ K+ + RAI
Sbjct: 1 MKHRKARQDAKRTKIFTKIIRELTVAAKGGANPADNPRLRAAVEKAYLNNLKKDVVERAI 60
Query: 70 QKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEG 129
+ NE+ Y E+ YEGY VNG A IV+C+T+NR RT ++R+ F+K GGNL G
Sbjct: 61 ARGAGT--NESDAYEELTYEGYGVNGVAFIVECMTDNRNRTAGDVRHAFDKKGGNLGTSG 118
Query: 130 SVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLE 189
SV ++F GQ+ F P ++ L++ ALE GA+D +I+ D ++T+ F +K++L
Sbjct: 119 SVAYLFARKGQISFEPGINEDALMEAALEAGADDVVINDDGSADVMTAFEDFFRVKDALA 178
Query: 190 MTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
G S+ I P + A K+ L++ L+ L DV+ VYTNA I
Sbjct: 179 SAGLTPASAEITQIPSLTVNLDKEAAEKILALIDALEDLDDVQNVYTNADI 229
>gi|218780798|ref|YP_002432116.1| hypothetical protein Dalk_2958 [Desulfatibacillum alkenivorans
AK-01]
gi|226701573|sp|B8FL13.1|Y2958_DESAA RecName: Full=Probable transcriptional regulatory protein Dalk_2958
gi|218762182|gb|ACL04648.1| protein of unknown function DUF28 [Desulfatibacillum alkenivorans
AK-01]
Length = 247
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGK+ +++++E+ +A G +PD N +LR AI A N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKVFSKLIKEITIAARMGGGDPDANPRLRTAINAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N RAI+K + E +NY E +YEGY G A++V+ +T+N+ R + IR+IF+
Sbjct: 61 MPKDNWERAIKKGTGEL--EGVNYEEFQYEGYGPGGGAVLVESLTDNKNRAAAEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L + G V +MF G ++ + T ++TL+++ALE GAED + + + +IT P
Sbjct: 119 KCGGSLGEAGCVAWMFDKKGYIVVNQSVTDEDTLMEIALEAGAED-VREAGDVFEVITQP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +K +++ G + E + + P + EA ++ +LL L DV+ VYT+A
Sbjct: 178 DDYDAVKEAIDAAGIETEDASVTKLPQNTVEVTGKEAEQMVRLLQTLDDCDDVQNVYTSA 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|256371999|ref|YP_003109823.1| hypothetical protein Afer_1219 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008583|gb|ACU54150.1| protein of unknown function DUF28 [Acidimicrobium ferrooxidans DSM
10331]
Length = 250
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 143/239 (59%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK VD RGK+ +++R++ VA G + N LR ++KA DA+
Sbjct: 1 MSGHSKWATIKHKKGAVDKARGKLFAKLIRQIEVAAREGGGDTSANATLRTMVQKARDAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P+ I RAI++ + E Y +V YEGY+ G AIIV C+T+NR RT +++R F+
Sbjct: 61 VPQATIERAIKRGTGEL--EGARYEQVNYEGYAPGGVAIIVSCLTDNRNRTGADVRAAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
+NGG+L++ G+V + F+ GQ+ + ++ L AL GAED D D + + + S
Sbjct: 119 RNGGSLAEPGAVSWQFQRLGQIRLSRDADEDELFQAALAAGAEDLTDDGDAWLVTVAA-S 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDG-EAIKLQKLLNELKKLHDVKKVYTN 237
++++LE GF ES+ + + P T + +D EA ++ +L+ L+ L DV++V N
Sbjct: 178 DLGAVRDALEAAGFAVESAEVELVPQTTVPVEDPQEARRVLRLVEALEDLDDVQEVTAN 236
>gi|333897269|ref|YP_004471143.1| hypothetical protein Thexy_1438 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112534|gb|AEF17471.1| UPF0082 protein yeeN [Thermoanaerobacterium xylanolyticum LX-11]
Length = 244
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 150/244 (61%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKWANIK KK +DA++GKI T++ +++ +A G +P+TN KLR AIEKA N+
Sbjct: 1 MSGHSKWANIKHKKEKMDAQKGKIFTKLTKDIIMAAKEGGDPETNSKLRDAIEKAKANNL 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P NI RAI+K + N+ EV YEGY G+AIIV+ +T+N+ RT +IR+IF++
Sbjct: 61 PNENIQRAIKKGTGELSGGNLE--EVVYEGYGPAGSAIIVEALTDNKNRTAGDIRHIFDR 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+GG+L G V +MF G + N ++ L +A++ GA+DF D D + I+T P
Sbjct: 119 SGGSLGSTGCVAWMFDKKGIITVEKSDNIDEDELAMVAIDAGADDFSSDGD-EYEILTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S F +K+++ G+ S+ I M P + D + K +K + +L++ DV++VY N
Sbjct: 178 SNFQAVKDAINKAGYVMSSAEITMIPQNRVKLSDSDYEKFEKFIEKLEENDDVQEVYHNV 237
Query: 239 LIFD 242
+ D
Sbjct: 238 DMPD 241
>gi|260425960|ref|ZP_05779939.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260420452|gb|EEX13703.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 246
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 150/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ ++ +E+ +A G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKFSKEITIAAKMGDPDPDKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + +Y E+RYEGY NG AIIV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDNIERAIKKA---MGGDGDDYEEIRYEGYGPNGVAIIVEAMTDNRNRTASNVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++++ + +T++ A+E GAED D++ + I +
Sbjct: 118 KNGGNLGETGSVAFMFERKGEIIYKIAAGDADTIMMAAIEAGAEDVESDEEEHV-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE ++ES+ ++ +P T L KL++ L+ DV++V TN
Sbjct: 177 TDLNEVATALETALGESESTKLIWKPTTTTELDLDSMQTLMKLVDALEDDDDVQRVTTN 235
>gi|78043311|ref|YP_360357.1| hypothetical protein CHY_1525 [Carboxydothermus hydrogenoformans
Z-2901]
gi|119391272|sp|Q3ABX7.1|Y1525_CARHZ RecName: Full=Probable transcriptional regulatory protein CHY_1525
gi|77995426|gb|ABB14325.1| conserved hypothetical protein TIGR01033 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 244
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K +D+ RGK+ T++ RE+ VA G +P+ N +L+ AI +A +AN
Sbjct: 1 MAGHSKWANIKHRKEKMDSLRGKVFTKLAREIMVAARLGGGDPEANPRLKAAIARAREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP NI RAI K + E+ Y EV YEGY G AI++ +T+NR RT IR++F+
Sbjct: 61 IPNENIQRAIMKGTGELAAES--YEEVFYEGYGPGGVAILLKIMTDNRNRTAGEIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL----PNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
K+GG++ + GSV ++F+ G + P + +L L L+ GAED L D+ ++ +I
Sbjct: 119 KHGGSMGEAGSVQWIFEEKGYITIPKEDNPGINEEEILLLVLDAGAED-LKDEGDQFEVI 177
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P F ++K++L K + I M P T + EA KL KLL+ ++ DV++VY
Sbjct: 178 TAPEAFEKVKDALNNANIKTSIAEITMLPKTTVPVSGEEAQKLLKLLDLFEEHDDVQEVY 237
Query: 236 TNALIFD 242
N + D
Sbjct: 238 ANFELVD 244
>gi|397165163|ref|ZP_10488616.1| hypothetical protein Y71_5352 [Enterobacter radicincitans DSM
16656]
gi|396093270|gb|EJI90827.1| hypothetical protein Y71_5352 [Enterobacter radicincitans DSM
16656]
Length = 246
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDIGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFEAG-DEDTIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|377576198|ref|ZP_09805182.1| hypothetical protein YeeN [Escherichia hermannii NBRC 105704]
gi|377542230|dbj|GAB50347.1| hypothetical protein YeeN [Escherichia hermannii NBRC 105704]
Length = 246
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISFEAG-DEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|345299726|ref|YP_004829084.1| hypothetical protein Entas_2570 [Enterobacter asburiae LF7a]
gi|345093663|gb|AEN65299.1| UPF0082 protein yeeN [Enterobacter asburiae LF7a]
Length = 246
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 145/243 (59%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISF-EKGDEDVIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++LE G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALEAAGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|390934777|ref|YP_006392282.1| hypothetical protein Tsac_1677 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570278|gb|AFK86683.1| UPF0082 protein yeeN [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 244
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 151/244 (61%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKWANIK KK +DA++GKI T++ +++ +A G +P+TN KLR AIEKA N+
Sbjct: 1 MSGHSKWANIKHKKEKMDAQKGKIFTKLTKDIIMAAKEGGDPETNSKLRDAIEKAKANNL 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI+K + N+ EV YEGY G+AIIV+ +T+N+ RT +IR+IF++
Sbjct: 61 PNDNIQRAIKKGTGELSGGNLE--EVVYEGYGPAGSAIIVEALTDNKNRTAGDIRHIFDR 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+GG+L G V +MF G + N ++ L +A++ GA+DF D D + I+T P
Sbjct: 119 SGGSLGSTGCVAWMFDKKGIITVEKNENIDEDELAMVAIDAGADDFSSDGD-EYEILTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F +K+++ G+ S+ I M P + D + K +K + +L++ DV++VY N
Sbjct: 178 TNFQAVKDAINKAGYVMSSAEITMIPQNRVKLSDSDYEKFEKFIEKLEENDDVQEVYHNV 237
Query: 239 LIFD 242
+ D
Sbjct: 238 DMPD 241
>gi|149201067|ref|ZP_01878042.1| hypothetical protein RTM1035_15617 [Roseovarius sp. TM1035]
gi|149145400|gb|EDM33426.1| hypothetical protein RTM1035_15617 [Roseovarius sp. TM1035]
Length = 246
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ ++ +E+ VA G+ +PD N +LRLAI++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKAQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + +Y E+RYEGY NG AIIV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDNIERAIKKA---MGGDAEDYEEIRYEGYGPNGVAIIVEAMTDNRNRTASNVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++ + + +T++ ALE GAED +D TI +
Sbjct: 118 KNGGNLGETGSVAFMFERKGEVTYAASVGDADTVMMAALEAGAEDVESGEDGH-TIWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ + LE ++ S+ +V +P T KL KL+ L+ DV++V TN
Sbjct: 177 TDLSEVASGLEGALGESTSTKLVWKPTTTTEMDLESMQKLMKLIEALEDDDDVQRVTTN 235
>gi|255526656|ref|ZP_05393561.1| protein of unknown function DUF28 [Clostridium carboxidivorans P7]
gi|296187160|ref|ZP_06855557.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
carboxidivorans P7]
gi|255509636|gb|EET85971.1| protein of unknown function DUF28 [Clostridium carboxidivorans P7]
gi|296048195|gb|EFG87632.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
carboxidivorans P7]
Length = 246
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 143/241 (59%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T++ +E+ +A G +N D N KLR + KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKADAKRGKIFTKLGKEIAIASKMGGSNLDANSKLRDVVAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I RAI+K + E +NY V YEGY G A+IV+ +T+N+ RT +N+R+ F
Sbjct: 61 MPMDTITRAIKKGAGEM--EGVNYESVVYEGYGPAGTAVIVNALTDNKNRTAANVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK--NTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGN+ G V FMF+ GQ++ K + L+ +AL+ GAEDF + D + T+
Sbjct: 119 KNGGNMGSTGCVSFMFQEKGQIVIEKTDDKDEDELMMMALDAGAEDFAAE-DEVFVVTTT 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++ +LE G + + + M P T + +K +K+++ L+ DV+ VY N
Sbjct: 178 PEDFGTVREALESNGLEFLEAEVKMIPDTYTAIDEETVVKFEKMIDALEDDEDVQDVYHN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|406870879|gb|EKD21895.1| hypothetical protein ACD_87C00279G0002 [uncultured bacterium]
Length = 251
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK +D+KRGKI T++++E+ +A G + N +LR A+ A + N
Sbjct: 1 MSGHSKWSTIKRKKGAIDSKRGKIFTKLIKEITLAARLGGGDLEGNARLRSAVLAAKEEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + Y EV YEGY G A+IV+ +T+N+ RTV+ IR+IF+
Sbjct: 61 MPKDNIDRAIKKGTGELAG-GAAYEEVTYEGYGPAGVAVIVEVMTDNKNRTVAEIRHIFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + G V +MF G + F ++ L++ ALE GA+D + D++ + +IT P
Sbjct: 120 KHGGNLGENGCVAWMFDKKGSMTFDKKAVDEDALMETALEAGADD-VRDQETEWEVITDP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +K +++ G+K S + + P + + G+A + KL+ +L+ DV+ VY+N
Sbjct: 179 LNFEAVKKAIDQKGWKTLDSRVGLIPQNTVRLEGGKAETMMKLMEKLEDNDDVQNVYSNF 238
Query: 239 LIFD 242
I D
Sbjct: 239 DISD 242
>gi|158520388|ref|YP_001528258.1| hypothetical protein Dole_0371 [Desulfococcus oleovorans Hxd3]
gi|226705841|sp|A8ZT17.1|Y371_DESOH RecName: Full=Probable transcriptional regulatory protein Dole_0371
gi|158509214|gb|ABW66181.1| protein of unknown function DUF28 [Desulfococcus oleovorans Hxd3]
Length = 246
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KW++IK KK DAKRGK+ T++++E+ +A G +PD N +LR AI A D N
Sbjct: 1 MSGHNKWSSIKHKKGAADAKRGKVFTKLIKEITLAARTGGGDPDGNPRLRTAIAAAKDEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K ++ E +NY E YEGY GAA++V+ +T+N+ R VS IR+IF+
Sbjct: 61 MPKDNIERAIKKGTGDL--EGVNYEENTYEGYGPGGAAVLVESLTDNKNRAVSEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+ GN+ + G V +MF G + + +++ L+++A+E GAED + + D+ +IT
Sbjct: 119 KHNGNMGENGCVAWMFDKKGYIEVEKSAAEEDHLMEVAIEAGAED-VRESDDTFEVITEV 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++ +L+ + + I M P T + D + ++ +LL+ L DV+KVYTNA
Sbjct: 178 EDLETVRQALDGASIQYAFAEITMLPQTMVDLDDKTSEQMIRLLDALDDCEDVQKVYTNA 237
Query: 239 LIFD 242
+ D
Sbjct: 238 SLSD 241
>gi|116748439|ref|YP_845126.1| hypothetical protein Sfum_0996 [Syntrophobacter fumaroxidans MPOB]
gi|166227552|sp|A0LGY9.1|Y996_SYNFM RecName: Full=Probable transcriptional regulatory protein Sfum_0996
gi|116697503|gb|ABK16691.1| protein of unknown function DUF28 [Syntrophobacter fumaroxidans
MPOB]
Length = 249
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK DAKRGK+ T+I++E+ VA G D N +LR A+ A N
Sbjct: 1 MSGHSKWSTIKHKKGAADAKRGKVFTKIIKEIMVAARMGGGAIDANPRLRAAVLAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI+K + E + Y E+ YEGY G A++VD +T+NR R S+IR+IF+
Sbjct: 61 MPKENIERAIKKGTGEL--EGVAYEEMNYEGYGPGGVAVLVDIMTDNRNRAASDIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+NGGNL + G V +MF G ++F + ++ L+++AL+ GA+D + D+D++ +ITS
Sbjct: 119 RNGGNLGEAGCVAWMFSKKGSIVFNKDKVSEDELMEIALDAGADD-VKDEDDQFEVITSL 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+F+ ++ + + E + I M P T + +D + A +L +L++ L+ DV+ Y N
Sbjct: 178 EEFVNVRAAFDARELAYEVAEITMVPQTTVRVEDEKLAQQLLRLMDGLEDSDDVQNAYAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDIPD 242
>gi|15606702|ref|NP_214082.1| hypothetical protein aq_1575 [Aquifex aeolicus VF5]
gi|6226456|sp|O67517.1|Y1575_AQUAE RecName: Full=Probable transcriptional regulatory protein aq_1575
gi|2983942|gb|AAC07491.1| hypothetical protein aq_1575 [Aquifex aeolicus VF5]
Length = 249
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHS WA IK KK VDA+RGK+ ++++RE+ VA G NP+ N +LR AIE+A AN
Sbjct: 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K ++ E + EV YEGY+ G A++V T+NR RT S +R++F
Sbjct: 61 MPWENIERAIKKGAGELEGEQ--FEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP--NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL G V ++F+ G + +P + LL+ A+E GAED ++ I I T
Sbjct: 119 KHGGNLGASGCVSYLFERKG-YIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHI-IYTV 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
P + E+K +LE G E + I +P + + D E A K+ KLLN L++L DV++V
Sbjct: 177 PEELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIA 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|337286113|ref|YP_004625586.1| hypothetical protein Thein_0743 [Thermodesulfatator indicus DSM
15286]
gi|335358941|gb|AEH44622.1| protein of unknown function DUF28 [Thermodesulfatator indicus DSM
15286]
Length = 252
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 153/245 (62%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHS WA IKRKK DAKRGKI T+++RE+ VA G +P N +LR AI+ A AN
Sbjct: 1 MAGHSHWAQIKRKKAAQDAKRGKIFTKLIREIMVAARMGGGDPSANPRLRAAIQAAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI+K + + EV YEGY G A+++ +T+N+ RTVS +R+IF+
Sbjct: 61 MPKENIERAIRKGTG--QEPGTTWEEVTYEGYGPGGVAVLIKSVTDNKRRTVSELRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL++ G+V ++F+ G +L N T + LL+ ALE GAED + + +++ IIT P
Sbjct: 119 KCGGNLAEPGAVAWVFEQKGLILVNRNETDEEKLLEAALEAGAED-VREYESEFEIITLP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+K +LE GF +S+ + M P + + +D + A ++ +L+ L+ DV++VY N
Sbjct: 178 EDLENVKKALEEAGFVIQSARVTMVPKSTVKIEDEKTAQQMLRLMETLEDHDDVQQVYAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDIPD 242
>gi|443320063|ref|ZP_21049191.1| DNA-binding regulatory protein, YebC/PmpR family [Gloeocapsa sp.
PCC 73106]
gi|442790215|gb|ELR99820.1| DNA-binding regulatory protein, YebC/PmpR family [Gloeocapsa sp.
PCC 73106]
Length = 250
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 147/242 (60%), Gaps = 5/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDAKRGK T++ R + VA G +P+ N +LR AI+KA A
Sbjct: 1 MAGHSKWANIKRQKARVDAKRGKTFTQLSRAIIVAARQGFPDPNANFQLRSAIDKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP NI RAI K +++ N+ E+RYEGY G AI+++ +T+NR RT +++R F+
Sbjct: 61 IPNENIERAIAKGAGTYADDDSNFEEIRYEGYGPGGVAILIEALTDNRNRTAADLRVAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDF-LID--KDNKITIIT 176
KNGGNL + G V +MFK G + ++ TLL+++L GA+++ LID + I T
Sbjct: 121 KNGGNLGETGCVSWMFKQQGVVTVEGAIQEETLLEVSLAGGAQNYELIDLKESQGAEIFT 180
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVY 235
S ++ +LE GFK + + P I +D +A L KLL+ L+ L DV+ V
Sbjct: 181 KISNLEQLHKTLESEGFKVVEAEMRWLPENMIEVQDPQQAESLFKLLDTLESLDDVQNVT 240
Query: 236 TN 237
TN
Sbjct: 241 TN 242
>gi|254441031|ref|ZP_05054524.1| conserved hypothetical protein TIGR01033 [Octadecabacter
antarcticus 307]
gi|198251109|gb|EDY75424.1| conserved hypothetical protein TIGR01033 [Octadecabacter
antarcticus 307]
Length = 251
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 156/241 (64%), Gaps = 10/241 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D RGK+ +++ +E+ +A G+ +PD N +LR+AI++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDKLRGKLFSKLSKEITIAAKMGDPDPDHNPRLRMAIKEAKGLS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I + NY E+RYEGY G A+IV+ +T+N+ RT S +R+ F+
Sbjct: 61 MPKDNIDRAIKKA---IGGDAENYDEIRYEGYGPGGVAVIVEAMTDNKNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL + GSV FMF+ GQ+L+L +T++ A+E GAED D+DN + II +
Sbjct: 118 KAGGNLGETGSVGFMFERKGQVLYLATAGDADTVMMAAIEAGAEDAQSDEDNHV-IICAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRP--YTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
S ++ N+LE ++ES+ ++ +P ++++ + E KL +L+ L+ D++ V T
Sbjct: 177 SDLNDVSNALEAELGESESTKLIWQPNIHSDLDLEGVE--KLMRLVEALEDDDDIQSVTT 234
Query: 237 N 237
N
Sbjct: 235 N 235
>gi|311069266|ref|YP_003974189.1| hypothetical protein BATR1942_11635 [Bacillus atrophaeus 1942]
gi|419820083|ref|ZP_14343697.1| hypothetical protein UY9_01691 [Bacillus atrophaeus C89]
gi|310869783|gb|ADP33258.1| hypothetical protein BATR1942_11635 [Bacillus atrophaeus 1942]
gi|388475733|gb|EIM12442.1| hypothetical protein UY9_01691 [Bacillus atrophaeus C89]
Length = 245
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 149/241 (61%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K D+KRGKI ++ +EL VA G +P++N LRL I+KA AN
Sbjct: 1 MAGHSKWKNIQKRKNAQDSKRGKIFMKLAKELYVAAKQGGTDPESNANLRLVIDKAKGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K N ++ NY ++ YEGY +G A++V C+T+N+ RT +N+R FN
Sbjct: 61 MPNDNIDRAIKKAAGN--HDGNNYEDITYEGYGPSGIAVMVTCLTDNKNRTATNVRTAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN---TKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGG+L + G V +MF G + T ++ ++ A+E GAED L DN + T
Sbjct: 119 KNGGSLGESGCVSYMFDRKGFIAIDRTDLKTAEDEMMLEAIEAGAED-LQTSDNLFEVFT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P KF E++ +LE + S+ + M P+T A KL+KL++ L+ DV++VYT
Sbjct: 178 EPEKFEEVRKALEGK-YPIVSAEVTMIPHTFAEVDQAAAEKLEKLIDMLEDDDDVQEVYT 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|373455426|ref|ZP_09547259.1| YebC/PmpR family DNA-binding regulatory protein [Dialister
succinatiphilus YIT 11850]
gi|371934871|gb|EHO62647.1| YebC/PmpR family DNA-binding regulatory protein [Dialister
succinatiphilus YIT 11850]
Length = 244
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 144/240 (60%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NIKRKK DA R +I T+I +E+ +A G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWENIKRKKGKTDAIRARITTKISKEITIAARMGGGDPVGNMRLKLALTKAKQNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI K + EV YEGY GAA+IV+C T+NR R ++IR+ F
Sbjct: 61 VPKENIQRAIAKGVGAASG--AGFDEVTYEGYGPGGAAVIVECNTDNRNRAAADIRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+GG++ G V +MFK G ++ + ++T++ +AL+ GAED ++D+ I T+P
Sbjct: 119 HHGGSVGTPGCVSWMFKKKGSIIVSKDAADEDTVMMVALDAGAEDVSSNEDS-YEITTTP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F+ + ++LE G E+S + M P + + A + L EL+ L DV++VYTNA
Sbjct: 178 EEFLTVSDALEKEGIPVEASEVAMVPDNYVKLEGDAAQTMAHLTAELEDLDDVQEVYTNA 237
>gi|310779486|ref|YP_003967819.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309748809|gb|ADO83471.1| protein of unknown function DUF28 [Ilyobacter polytropus DSM 2926]
Length = 250
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 149/246 (60%), Gaps = 8/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW+NIK +K D KR K+ T++ +EL + A G + + N +LRLA+EKA N
Sbjct: 1 MAGHSKWSNIKHRKGAQDKKRAKLFTKLGKELTISAKEGGGDINFNPRLRLALEKARSGN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E + Y+E+RYEGY +G A IVD +T+N+ R+ S++R+ F+
Sbjct: 61 MPKDNIDRAIKKGTGEL--EGVEYVEIRYEGYGPSGTAFIVDVVTDNKNRSASSVRSTFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP--NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL +G+V +MF G L+ +P + L+ ALE GAED ++ D +IT
Sbjct: 119 KRGGNLGSDGAVAWMFNKNG-LIEIPAEGIDEEELMMTALEAGAEDVKLE-DETFEVITD 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
P+ F + +SL G+K E + + M P + D + A K+ L L+ + DV VY+
Sbjct: 177 PADFQTVLDSLVEAGYKYEEAEVTMIPENKVEITDEDTAKKVFGLFEALEDIDDVDDVYS 236
Query: 237 NALIFD 242
N I D
Sbjct: 237 NFDIPD 242
>gi|322435523|ref|YP_004217735.1| hypothetical protein AciX9_1909 [Granulicella tundricola MP5ACTX9]
gi|321163250|gb|ADW68955.1| protein of unknown function DUF28 [Granulicella tundricola
MP5ACTX9]
Length = 246
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 144/239 (60%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK DAKRGKI TR+++E+ +A + G +PD N +LR AI A N
Sbjct: 1 MSGHSKWATIKHKKGATDAKRGKIFTRLIKEITIAAKSGGGDPDGNPRLRGAIAAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQ+ + E ++Y E+ YEGY G A+I+D +T+N+ R VS IR+ F+
Sbjct: 61 MPADNIKRAIQRGTGEL--EGVSYEEMSYEGYGPGGVAVIIDVLTDNKNRAVSEIRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL EG+V +MF G + ++ ++ L+++ LE GAED L D+ I+ P
Sbjct: 119 KNGGNLGTEGAVSWMFTKKGVISIAKDSANEDKLMEIVLESGAED-LNDEGEHWEILCDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F + N+L+ E++ + T + +A + +LL ++ L D + +Y+N
Sbjct: 178 ADFEAVTNALKAAKIPTETAEVTKIASTYTKLEGSQATAMMRLLETIEDLDDTQNLYSN 236
>gi|94264072|ref|ZP_01287871.1| Protein of unknown function DUF28 [delta proteobacterium MLMS-1]
gi|93455488|gb|EAT05678.1| Protein of unknown function DUF28 [delta proteobacterium MLMS-1]
Length = 249
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 145/245 (59%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDAKRGKI +R+ +E+ VA G T N +LR A+ A N
Sbjct: 1 MAGHSKWANIKRRKGAVDAKRGKIFSRLNKEIMVAARLGGGDSTGNPRLRSALAAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK N+ RAI+K + E Y E+ YEGY G A++V+ +T+NR+RTV+ +R+ F+
Sbjct: 61 MPKENVERAIKKGTGEL--EGAAYEEITYEGYGPGGVAVLVEAMTDNRVRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL + SV +MF GQ+ ++ LL++ALE GAED + D + I+ P
Sbjct: 119 KAGGNLGETNSVSWMFDKKGQVFIERQGLAEDDLLEMALEAGAEDMISD-EQSFQILCDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+F ++ +L G + + M P + D + A +L K+L L+ DV++V++N
Sbjct: 178 GEFDQVSQALRERGLPVSEAAVTMIPKNLVEVSDEKTARQLLKMLEMLEDNDDVQQVHSN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 LDIAD 242
>gi|313894586|ref|ZP_07828149.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 158 str. F0412]
gi|313440776|gb|EFR59205.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
oral taxon 158 str. F0412]
Length = 244
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 148/245 (60%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA + K+ T+I RE+ VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKTDALKAKMATKIGREITVAARMGGADPTGNMRLKLALQKARENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENIN-YIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
IPK+NI RAI K + ++N Y E+ YEGY G A+ V+ +T+NR R +++R+ F
Sbjct: 61 IPKDNIQRAIDKG---VGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
+K GGNL + G V +MFK G + ++ L LALE GAED L +D+ I T+
Sbjct: 118 SKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDELTMLALEAGAED-LKSEDDVFEIYTT 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + ++ +L G + + I M P T I +A+K+QK+L+ L L DV+ VY N
Sbjct: 177 PEDYDAVEAALADAGIETVVAKITMIPDTTIELSGDDAVKMQKMLDVLDNLDDVQNVYHN 236
Query: 238 ALIFD 242
++ D
Sbjct: 237 GILPD 241
>gi|114762980|ref|ZP_01442410.1| hypothetical protein 1100011001344_R2601_20911 [Pelagibaca
bermudensis HTCC2601]
gi|114544304|gb|EAU47312.1| hypothetical protein R2601_20911 [Pelagibaca bermudensis HTCC2601]
Length = 246
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ ++ +E+ VA G+ +PD N +LRLAI++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E +Y E+RYEGY NG A+IV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDNIERAIKKASGG---EGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++++ + +T++ A+E GAED + D I +
Sbjct: 118 KNGGNLGETGSVAFMFERKGEIVYPADAGDADTVMMAAIEAGAED-VESSDEGHVIYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
S ++ LE ++ES+ ++ +P T L KL++ L+ DV++V TN
Sbjct: 177 SDLNDVATGLEAELGESESTKLIWKPTTTTELDLDSMQSLMKLVDALEDDDDVQRVTTN 235
>gi|389578806|ref|ZP_10168833.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfobacter
postgatei 2ac9]
gi|389400441|gb|EIM62663.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfobacter
postgatei 2ac9]
Length = 247
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 146/244 (59%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK D KR K+ T++++E+ VA G +P N +LR AI+ A N
Sbjct: 1 MSGHSKWSTIKHKKGAADKKRAKVFTKLIKEITVAARMGGGDPGANPRLRRAIDSAKTQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K ++ + +NY E+ YEGY G A++V+C+T+N+ RT++++R IFN
Sbjct: 61 MPKDNVDRAIKKGTGDM--DGVNYEEIIYEGYGPGGVAVMVECLTDNKNRTIADVRYIFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ +G V +MF G + + + TL+++ALE GAED + D+ ++T+P
Sbjct: 119 KAGGNVGTDGCVAWMFDKKGVITISKEHADEETLMEVALEAGAED-IKDEGETFDVLTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F +K++++ E + I M P EA ++ + + L DV+ YTNA
Sbjct: 178 EDFDAVKDAIDGAQIPCEVAEISMVPQNTTAVSGKEAEQMVRFMEALDDNDDVQNFYTNA 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|374855404|dbj|BAL58262.1| hypothetical conserved protein [uncultured Acidobacteria bacterium]
Length = 251
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 141/239 (58%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW IK KKL DAKRGK+ ++++RE+ VA G +P+ N +LR AI +A N
Sbjct: 1 MSGHSKWHQIKHKKLAADAKRGKLFSKLIREISVAARLGGADPEANPRLRKAIAEAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P+ I RAI + I E Y EV YEGY G A++V+ +T+NR RTVS +R+IF+
Sbjct: 61 MPQETIQRAIDRGTGKIAGEQ--YEEVIYEGYGPGGVAVLVEALTSNRNRTVSELRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+ GGNL + G V +MF+ G + + + DLALE GAED +D++ IIT+P
Sbjct: 119 RYGGNLGESGCVAWMFQKKGYIAVEKGALSEEAIFDLALEAGAEDVRVDEEGNYEIITAP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F + ++ G ++ + M P + + + +A + KL++ L+ DV++V N
Sbjct: 179 EDFDVVLEKVKQAGIHPLTAQLTMIPQSYVRLEGKDAALMLKLMDALEDHDDVQRVSAN 237
>gi|384920379|ref|ZP_10020389.1| hypothetical protein C357_14601 [Citreicella sp. 357]
gi|384465776|gb|EIE50311.1| hypothetical protein C357_14601 [Citreicella sp. 357]
Length = 246
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 152/240 (63%), Gaps = 8/240 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ ++ +E+ +A G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKFSKEITIAAKMGDPDPDKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I E +Y E+RYEGY NG A+IV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDNIERAIKKA---IGGEGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++++ +T++ A+E GAED D + I +
Sbjct: 118 KNGGNLGETGSVAFMFERKGEIVYTSAVGDADTVMMAAIEAGAEDVESAGDEHV-IYCAA 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYTN 237
+ E+ +LE ++ES+ ++ +P T D E+++ L KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSTALEAELGESESTKLIWKPGTTTEL-DLESMQTLMKLVDALEDDDDVQRVTTN 235
>gi|414084375|ref|YP_006993083.1| hypothetical protein BN424_2328 [Carnobacterium maltaromaticum
LMA28]
gi|412997959|emb|CCO11768.1| conserved hypothetical protein [Carnobacterium maltaromaticum
LMA28]
Length = 241
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 149/243 (61%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K D KRG+I +I RE+ +A+ G +P TN +LR+ ++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDTKRGQIFQKISREIYMAVKSGGPDPSTNPQLRMMMDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +N+ RAI K + + + EN Y E+ YEGY NG A++V +T+NR RT +N+R FN
Sbjct: 61 MPNDNVKRAIAKGSQSGEGEN--YEEITYEGYGPNGIAVLVHTLTDNRNRTGTNVRVAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN---TKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGG+L + GSV +MF G L ++T+L LE G ED D I T
Sbjct: 119 KNGGSLGETGSVSYMFDRKGYLAIERRDLAVDEDTMLMNVLEAGGEDMET-SDEVFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPY-TNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
PS FI ++++LE +G+K + I M P TN + D A+ Q +L++L++ DV +V+
Sbjct: 178 EPSDFISVRDALEASGYKLAQAEITMVPQTTNELPADKRAL-FQTMLDKLEEDDDVSEVF 236
Query: 236 TNA 238
NA
Sbjct: 237 HNA 239
>gi|125974565|ref|YP_001038475.1| hypothetical protein Cthe_2075 [Clostridium thermocellum ATCC
27405]
gi|256004074|ref|ZP_05429059.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
2360]
gi|281419090|ref|ZP_06250107.1| protein of unknown function DUF28 [Clostridium thermocellum JW20]
gi|385780004|ref|YP_005689169.1| hypothetical protein Clo1313_2734 [Clostridium thermocellum DSM
1313]
gi|419721349|ref|ZP_14248513.1| UPF0082 protein yeeN [Clostridium thermocellum AD2]
gi|419726873|ref|ZP_14253893.1| UPF0082 protein yeeN [Clostridium thermocellum YS]
gi|166227516|sp|A3DH53.1|Y2075_CLOTH RecName: Full=Probable transcriptional regulatory protein Cthe_2075
gi|125714790|gb|ABN53282.1| protein of unknown function DUF28 [Clostridium thermocellum ATCC
27405]
gi|255991997|gb|EEU02094.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
2360]
gi|281407239|gb|EFB37500.1| protein of unknown function DUF28 [Clostridium thermocellum JW20]
gi|316941684|gb|ADU75718.1| protein of unknown function DUF28 [Clostridium thermocellum DSM
1313]
gi|380769838|gb|EIC03738.1| UPF0082 protein yeeN [Clostridium thermocellum YS]
gi|380782519|gb|EIC12153.1| UPF0082 protein yeeN [Clostridium thermocellum AD2]
Length = 242
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 144/241 (59%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DA++GKI T+I RE+ + + G +P+ N KL+ I KA AN
Sbjct: 1 MAGHSKWANIKHKKQKTDAQKGKIFTKIGREIAIVVKQGGPDPEVNSKLKDVIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P I R+I+K + ++ NY EV YEGY G A+IV+ T+NR RT +R++F+
Sbjct: 61 MPNETIMRSIKKAAGEV--DSTNYEEVVYEGYGPGGVAVIVEATTDNRNRTAGEVRHLFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V FMF G +L + K ++ L+ AL+ GAEDF + D IIT+
Sbjct: 119 KFGGNLGTTGCVSFMFDKKGVILIEKSDKVNEDDLMMKALDLGAEDFTAE-DEYFEIITA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYT 236
P F +++ LE G++ + + M P T D + I+ + KL++ L+ L DV+ VY
Sbjct: 178 PEDFSKVREGLEKEGYEFVEAEVEMVPQTTTTLTDPKHIEFMNKLIDSLEDLDDVQNVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|257458165|ref|ZP_05623319.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257444459|gb|EEV19548.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 247
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ +A G +P+ N +LR AI KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQMFTKFIKEISIAARMGGGDPNGNPRLRTAILKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + +Y E+ YEGY+ G A++V+ +T+N+ R +N+RN+F+
Sbjct: 61 MPKDNIERAIKKGTGELGG--ASYEELLYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL GSV +MF G + + + L++ ALE GAED + ITI T P
Sbjct: 119 KNGGNLGATGSVSYMFNRKGVIEYDAEVVSEEKLMEEALEAGAEDIQTEG-GIITITTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F + +L+ GF++ S+ + M P T + + K+ K++ L++ DV+ VYTN
Sbjct: 178 NDFASVLEALQEKGFESVSAEVSMVPATYMSLEAETIRKVLKMVERLEEDDDVQNVYTNL 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|422730128|ref|ZP_16786522.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0012]
gi|315149401|gb|EFT93417.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0012]
Length = 242
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPTMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|328953688|ref|YP_004371022.1| hypothetical protein Desac_2010 [Desulfobacca acetoxidans DSM
11109]
gi|328454012|gb|AEB09841.1| UPF0082 protein yeeN [Desulfobacca acetoxidans DSM 11109]
Length = 250
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 155/245 (63%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK DAKRGKI +++ +E+ VA G ++P N +LR AI A N
Sbjct: 1 MSGHSKWSTIKRKKGAADAKRGKIFSKLNKEIMVAARIGGSDPSGNTRLRAAIAAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI+K ++ N + EV YEGY +G A++V+ +T+N+ RTVS +R++F+
Sbjct: 61 MPKENIDRAIKKGAGELEGANA-FEEVFYEGYGPSGVALLVESLTDNKNRTVSEVRHLFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG++ + G V +MF G + F + ++ LL+ ALE GAED + +++ +IT
Sbjct: 120 KYGGSMGEAGCVAWMFDKKGVIAFSRDAVSEDELLEAALEAGAEDLQVG-ESEYEVITDL 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+ F ++KN+LE GFK E + I M P T I ++ + A +L KL+ L+ L DV+ V+ N
Sbjct: 179 ASFEKVKNALEEQGFKWEVAEIQMHPKTTIRLEEEKSAQQLLKLMEMLEDLDDVQHVFAN 238
Query: 238 ALIFD 242
I D
Sbjct: 239 FDIPD 243
>gi|94969152|ref|YP_591200.1| hypothetical protein Acid345_2125 [Candidatus Koribacter versatilis
Ellin345]
gi|118574112|sp|Q1IPS4.1|Y2125_KORVE RecName: Full=Probable transcriptional regulatory protein
Acid345_2125
gi|94551202|gb|ABF41126.1| protein of unknown function DUF28 [Candidatus Koribacter versatilis
Ellin345]
Length = 248
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKWA IK KK +DAKRGKI TR+++E+ +A G + + N +LR A+ A N+
Sbjct: 1 MSGHSKWATIKHKKGALDAKRGKIFTRLIKEITMAAKQGGDAEKNPRLRSAVAAAKAENM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAIQ+ I E +NY E+ +EGY G AI+V+ T+NR RTVS IR+ F K
Sbjct: 61 PADNIKRAIQRGTGEI--EGVNYEEITFEGYGPGGVAILVEVTTDNRNRTVSEIRHAFGK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
NGGN+ + GSV +MF G ++ K++ L++L LE GA+D D DN I+ P+
Sbjct: 119 NGGNMGEAGSVAWMFAKKGSIVIAKAAAKEDDLMNLVLENGADDLKDDGDN-WEILCDPN 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ + +++ G E + I M P I + + + +LL L+ DV+ VY+N
Sbjct: 178 AYEGVLEAVKKAGITPEVAEIGMIPQNYIKLEGNQVNTMVRLLEALEDGDDVQHVYSN 235
>gi|307289932|ref|ZP_07569861.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0411]
gi|306498998|gb|EFM68487.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0411]
Length = 242
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHEIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|415768181|ref|ZP_11483520.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|348658135|gb|EGY75711.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D17P-2]
Length = 246
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 145/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY GAA++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGAAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A+KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETALKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|227517625|ref|ZP_03947674.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX0104]
gi|229546489|ref|ZP_04435214.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX1322]
gi|229548603|ref|ZP_04437328.1| protein of hypothetical function DUF28 [Enterococcus faecalis ATCC
29200]
gi|256617545|ref|ZP_05474391.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761434|ref|ZP_05502014.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256854478|ref|ZP_05559842.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256959795|ref|ZP_05563966.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|257080904|ref|ZP_05575265.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083593|ref|ZP_05577954.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086018|ref|ZP_05580379.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089091|ref|ZP_05583452.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415233|ref|ZP_05592227.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257418279|ref|ZP_05595273.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257420921|ref|ZP_05597911.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293384983|ref|ZP_06630817.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
R712]
gi|293389253|ref|ZP_06633715.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
S613]
gi|307277053|ref|ZP_07558158.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX2134]
gi|307289644|ref|ZP_07569588.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0109]
gi|312900251|ref|ZP_07759563.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0470]
gi|312904320|ref|ZP_07763482.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0635]
gi|312905972|ref|ZP_07764985.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 512]
gi|312909318|ref|ZP_07768174.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 516]
gi|312953038|ref|ZP_07771891.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0102]
gi|384512358|ref|YP_005707451.1| glucose-1-phosphate adenylyltransferase [Enterococcus faecalis
OG1RF]
gi|384517711|ref|YP_005705016.1| hypothetical protein EF62_1032 [Enterococcus faecalis 62]
gi|421513636|ref|ZP_15960394.1| hypothetical protein YebC [Enterococcus faecalis ATCC 29212]
gi|422684700|ref|ZP_16742930.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4000]
gi|422688229|ref|ZP_16746388.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0630]
gi|422691325|ref|ZP_16749362.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0031]
gi|422695662|ref|ZP_16753641.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4244]
gi|422697480|ref|ZP_16755419.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1346]
gi|422702276|ref|ZP_16760112.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1302]
gi|422705807|ref|ZP_16763600.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0043]
gi|422721390|ref|ZP_16777982.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0017]
gi|422724355|ref|ZP_16780834.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2137]
gi|422725309|ref|ZP_16781773.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0312]
gi|422731299|ref|ZP_16787670.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0645]
gi|424671353|ref|ZP_18108356.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis 599]
gi|424677084|ref|ZP_18113944.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV103]
gi|424681173|ref|ZP_18117964.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV116]
gi|424682674|ref|ZP_18119439.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV129]
gi|424687939|ref|ZP_18124556.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV25]
gi|424689910|ref|ZP_18126447.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV31]
gi|424694874|ref|ZP_18131262.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV37]
gi|424697187|ref|ZP_18133522.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV41]
gi|424702202|ref|ZP_18138364.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV62]
gi|424702579|ref|ZP_18138727.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV63]
gi|424706587|ref|ZP_18142589.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV65]
gi|424716765|ref|ZP_18146067.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV68]
gi|424720938|ref|ZP_18150037.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV72]
gi|424725635|ref|ZP_18154325.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV73]
gi|424726827|ref|ZP_18155477.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV81]
gi|424742385|ref|ZP_18170708.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV85]
gi|424752401|ref|ZP_18180400.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV93]
gi|424760312|ref|ZP_18187940.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis R508]
gi|430359757|ref|ZP_19425984.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis OG1X]
gi|430369672|ref|ZP_19428687.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis M7]
gi|227074931|gb|EEI12894.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX0104]
gi|229306234|gb|EEN72230.1| protein of hypothetical function DUF28 [Enterococcus faecalis ATCC
29200]
gi|229308389|gb|EEN74376.1| protein of hypothetical function DUF28 [Enterococcus faecalis
TX1322]
gi|256597072|gb|EEU16248.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256682685|gb|EEU22380.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256710038|gb|EEU25082.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256950291|gb|EEU66923.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256988934|gb|EEU76236.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991623|gb|EEU78925.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994048|gb|EEU81350.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256997903|gb|EEU84423.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157061|gb|EEU87021.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160107|gb|EEU90067.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257162745|gb|EEU92705.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291077661|gb|EFE15025.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
R712]
gi|291081417|gb|EFE18380.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
S613]
gi|306499458|gb|EFM68831.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0109]
gi|306506224|gb|EFM75389.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX2134]
gi|310627967|gb|EFQ11250.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 512]
gi|310629067|gb|EFQ12350.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0102]
gi|310632416|gb|EFQ15699.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0635]
gi|311290342|gb|EFQ68898.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
DAPTO 516]
gi|311292612|gb|EFQ71168.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0470]
gi|315025655|gb|EFT37587.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2137]
gi|315030527|gb|EFT42459.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4000]
gi|315031354|gb|EFT43286.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0017]
gi|315146891|gb|EFT90907.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX4244]
gi|315153893|gb|EFT97909.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0031]
gi|315156691|gb|EFU00708.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0043]
gi|315159721|gb|EFU03738.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0312]
gi|315162694|gb|EFU06711.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0645]
gi|315166177|gb|EFU10194.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1302]
gi|315173939|gb|EFU17956.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1346]
gi|315578761|gb|EFU90952.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0630]
gi|323479844|gb|ADX79283.1| conserved hypothetical protein [Enterococcus faecalis 62]
gi|327534247|gb|AEA93081.1| glucose-1-phosphate adenylyl transferase [Enterococcus faecalis
OG1RF]
gi|401673235|gb|EJS79635.1| hypothetical protein YebC [Enterococcus faecalis ATCC 29212]
gi|402351767|gb|EJU86639.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV116]
gi|402355582|gb|EJU90353.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV103]
gi|402358831|gb|EJU93490.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis 599]
gi|402362137|gb|EJU96674.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV25]
gi|402365413|gb|EJU99833.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV31]
gi|402366631|gb|EJV00996.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV129]
gi|402369631|gb|EJV03904.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV37]
gi|402369877|gb|EJV04132.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV62]
gi|402376547|gb|EJV10484.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV41]
gi|402386799|gb|EJV20294.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV68]
gi|402386961|gb|EJV20455.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV63]
gi|402387407|gb|EJV20884.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV65]
gi|402391004|gb|EJV24323.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV73]
gi|402392590|gb|EJV25839.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV72]
gi|402398338|gb|EJV31288.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV81]
gi|402400503|gb|EJV33326.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV85]
gi|402403837|gb|EJV36490.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis R508]
gi|402404591|gb|EJV37208.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis ERV93]
gi|429513221|gb|ELA02809.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis OG1X]
gi|429515769|gb|ELA05276.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis M7]
Length = 242
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|285019192|ref|YP_003376903.1| hypothetical protein XALc_2432 [Xanthomonas albilineans GPE PC73]
gi|283474410|emb|CBA16911.1| hypothetical protein XALC_2432 [Xanthomonas albilineans GPE PC73]
Length = 244
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 149/235 (63%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P N +LR+A++K L +N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARAGGGDPSNNPRLRVAMDKGLASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
NL EGSV FMFK G L F + + + A+E GA+D ++ +D I ++T+P F
Sbjct: 120 NLGTEGSVAFMFKRLGVLSFASGADEEAITEAAIEAGADDIVVYPEDGAIDVLTAPDTFQ 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+K++++ G A+ + I R +I +++KLL+ L+ L DV+ VY+N
Sbjct: 180 TVKDAMDALGLVADHADITFRADNDIAVDSDTGTQVRKLLDMLEDLDDVQNVYSN 234
>gi|225181977|ref|ZP_03735410.1| protein of unknown function DUF28 [Dethiobacter alkaliphilus AHT 1]
gi|225167339|gb|EEG76157.1| protein of unknown function DUF28 [Dethiobacter alkaliphilus AHT 1]
Length = 251
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 142/240 (59%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K VDA++GK+ T+I +E+ A+ G +P+ N +LRLA++KA N
Sbjct: 1 MAGHSKWANIKHRKARVDAQKGKVFTKISKEIMAAVRQGGGDPNNNFRLRLALQKARSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQK + E N+ E+ YEGY G A++++ +T+NR RT IR+IF+
Sbjct: 61 MPNDNIQRAIQKGAGEL--EGTNFEEIIYEGYGPAGTAVMLEILTDNRNRTAGEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG+L + G V +MF G L + ++ L+ LAL+ GAEDF +N I T P
Sbjct: 119 KSGGSLGETGCVAWMFNRRGYLEVSKEGHDEDELMLLALDAGAEDFEA-GENAFEIYTRP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
F +K +E G + I M P T + D E A K L+ L+ DV+ YTN
Sbjct: 178 DDFEAVKEKMEAEGISFGEAAITMIPETTVEVPDVEGAKKALALIEALEDHDDVQNAYTN 237
>gi|254467141|ref|ZP_05080552.1| conserved hypothetical protein TIGR01033 [Rhodobacterales bacterium
Y4I]
gi|206688049|gb|EDZ48531.1| conserved hypothetical protein TIGR01033 [Rhodobacterales bacterium
Y4I]
Length = 268
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 149/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 23 MAGHSKWANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPDKNPRLRLAVKEAKSQS 82
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K I + NY E+RYEGY G A+IV+ +T+N+ RT SN+R+IF
Sbjct: 83 VPKDVIERAIKKA---IGGDAENYDEIRYEGYGPAGVAVIVEAMTDNKNRTASNVRSIFG 139
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + + +T++ A+E GAED +D I I +
Sbjct: 140 KNGGNLGETGSVGFMFDRKGEVTYPASVGDADTVMMAAIEAGAEDVESSEDGHI-IYCAD 198
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++ N+LE ++ES+ +V +P T KL KL++ L+ DV++V TN
Sbjct: 199 TDLNDVSNALEAELGESESTKLVWKPTTTTELDLDGMQKLMKLVDALEDDDDVQRVTTN 257
>gi|297181905|gb|ADI18082.1| uncharacterized conserved protein [uncultured Acidobacteriales
bacterium HF0200_23L05]
Length = 249
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 148/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA+IK KK DAKRGK+ TRI++EL VA + G +PDTN +LR I A AN
Sbjct: 1 MSGHSKWASIKHKKGAADAKRGKLFTRIIKELTVAARDAGGDPDTNPRLRTVIADAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI++ + ++Y EV YE Y GAA++++C+T+N R V IR++ +
Sbjct: 61 MPADNIKRAIRRGTG--EEPGVSYEEVTYEAYGPGGAALLIECMTDNTNRAVGEIRHLLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+ GNL SV +MF+ G ++ + TL+ A+E GA+DF + DN II++P
Sbjct: 119 KHNGNLGTTNSVAWMFEKHGYIVIEKAGVDEETLMTAAIEAGADDFKDEGDN-WEIISTP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F EI++++ G + S+ + M P + + +A ++ KL++ L+ DV+ +++N
Sbjct: 178 ELFEEIRSAVTAAGVEPMSAQVAMLPQNLVRLEGKQAQQMIKLMDVLEDQDDVQNLWSN 236
>gi|333370430|ref|ZP_08462436.1| glucose-1-phosphate adenylyltransferase [Desmospora sp. 8437]
gi|332977888|gb|EGK14637.1| glucose-1-phosphate adenylyltransferase [Desmospora sp. 8437]
Length = 275
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+ +K DA RGK+ ++ RE+ VA G +PD N +LRLAI KA N
Sbjct: 27 MAGHSKWKNIQHRKGRQDALRGKLFAKLAREISVAAREGGGDPDQNQRLRLAISKARSQN 86
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI + NY V YEGY GAA++ + +T+NR RT +++R+IF+
Sbjct: 87 MPNDNIERAIHRGTG--AEGGSNYEAVTYEGYGPGGAAVMAEALTDNRNRTAADVRHIFS 144
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GG++ + G V +MF G L ++ ++ LE GAEDF +D I TS
Sbjct: 145 KRGGSMGEAGCVAWMFDKKGLLRIDREAGQDEDEMMLQVLEAGAEDFEASED-AFEITTS 203
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P +F E+K SLE GF ++ + M P + + ++ +LL L+ D++ VY N
Sbjct: 204 PDQFEEVKASLEGEGFHFSTAEVTMVPQNTVTLTGDQVTQMLQLLEALEDHDDIQNVYAN 263
Query: 238 ALIFD 242
I D
Sbjct: 264 VEIDD 268
>gi|325971235|ref|YP_004247426.1| hypothetical protein [Sphaerochaeta globus str. Buddy]
gi|324026473|gb|ADY13232.1| UPF0082 protein yeeN [Sphaerochaeta globus str. Buddy]
Length = 249
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 153/246 (62%), Gaps = 9/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK I DAKRG+ T++++E+ VA G +P+TN +LR A+ KA N
Sbjct: 1 MSGHSKWATIKHKKGIADAKRGQKFTKLIKEISVAAKMGGADPETNARLRTAVLKARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + +N Y E+ YEGY+ G A+I+D +T+N+ RT S++R+
Sbjct: 61 MPKDNIDRAIKKGAGEL--DNSTYYELTYEGYAPGGVALIIDTLTDNKNRTASDVRSTLT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK---NTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGG L G V +MF+ G + + +T+K + ++ALE GA+D + D I +IT
Sbjct: 119 KNGGTLGASGCVSYMFQTKGIITY--DTEKYSEEQIFEVALENGADDVTTN-DGVIEVIT 175
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+PS F + +++ GF+ ES+ + + +A K+ K++++L++L DV+ V +
Sbjct: 176 TPSDFGNVLEAMQKAGFEQESAEVEKVADQTVTLDSDKARKVLKIIDKLEELDDVQLVSS 235
Query: 237 NALIFD 242
N + D
Sbjct: 236 NLELPD 241
>gi|118443572|ref|YP_877892.1| hypothetical protein NT01CX_1819 [Clostridium novyi NT]
gi|166219528|sp|A0PZU0.1|Y1819_CLONN RecName: Full=Probable transcriptional regulatory protein
NT01CX_1819
gi|118134028|gb|ABK61072.1| conserved hypothetical protein [Clostridium novyi NT]
Length = 246
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DA +G+I T+I REL +A + G+NPDTN KLR I KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKNDAAKGRIFTKIGRELILAARDGGSNPDTNAKLRDVIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I RAI+K + E I Y E+ YEGY+ G A++V C+T+NR R+ +++R+ F+
Sbjct: 61 MPNDTIDRAIKKGAGEL--EGITYEEIVYEGYAPGGVAVMVKCLTDNRNRSAASVRHKFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V +MF+ GQL+ + ++ L+ ALE GAEDF +++ I T
Sbjct: 119 KYGGNLGANGCVSYMFQRKGQLVIEKTDEIDEDELMMQALEAGAEDFSAEEE-VFEITTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++ LE G+ + + M P A K QKLL+ L++ DV+ VY N
Sbjct: 178 PEDFSAVREELEKNGYTFLEADVTMIPDVMAAVDMETAPKTQKLLDMLEEDDDVQDVYHN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|269122135|ref|YP_003310312.1| hypothetical protein Sterm_3547 [Sebaldella termitidis ATCC 33386]
gi|268616013|gb|ACZ10381.1| protein of unknown function DUF28 [Sebaldella termitidis ATCC
33386]
Length = 250
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 148/245 (60%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+R K+ TRI +EL +A G N +LRLA++KA AN
Sbjct: 1 MAGHSKWANIKHRKGRQDAQRAKVFTRIGKELTIAAKLGGGDIGFNPRLRLAVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + E ++Y E+RYEGY G A +VD +T+N+ R+ S +R F+
Sbjct: 61 MPKDNMERAIKKGTGEL--EGVDYQEIRYEGYGPGGVAFLVDVVTDNKNRSASTVRMNFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+N GNL + GSV F+F G F + ++ L++ AL+ GAED +++K +IT
Sbjct: 119 RNDGNLGETGSVSFLFDRKGIFEFKKDGIDEDVLMETALDAGAED-VVEKSEAWLVITDT 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+ F +K + + E + M P T I D E A KL KL ++L++ DV+++Y+N
Sbjct: 178 NDFDTVKEAFDTNKLIYEEGEVTMHPATEIEITDLETAKKLMKLYDDLEENEDVQEIYSN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDIAD 242
>gi|210612602|ref|ZP_03289393.1| hypothetical protein CLONEX_01595 [Clostridium nexile DSM 1787]
gi|210151527|gb|EEA82534.1| hypothetical protein CLONEX_01595 [Clostridium nexile DSM 1787]
Length = 243
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 144/243 (59%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT--NIKLRLAIEKALDA 58
M+GHSK+ANIK KK DA RGKI T+I REL VA+ G PD N +LR I KA
Sbjct: 1 MSGHSKFANIKHKKEKNDAVRGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKAN 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+P +NI R+I+K + + NY V YEGY NG AIIVD +T+N+ RT SN+RN F
Sbjct: 61 NMPNDNIERSIKKAAGDA--DASNYEHVTYEGYGPNGTAIIVDALTDNKNRTASNVRNAF 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITII 175
K GN+ G V FMF GQ++ + L+ AL+ GAEDF +++++ I+
Sbjct: 119 TKGSGNVGTPGCVSFMFDKKGQIIVAKEECEMDADDLMMTALDAGAEDF-VEEEDSFEIL 177
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKV 234
T P F E++ +LE G S+ + M P T + D +K +QK L+ L++ DV++V
Sbjct: 178 TDPDSFSEVRLTLEEAGIPMASAEVTMIPQTWVQLTDETDLKNIQKTLDLLEEDDDVQEV 237
Query: 235 YTN 237
Y N
Sbjct: 238 YHN 240
>gi|29375262|ref|NP_814415.1| hypothetical protein EF0663 [Enterococcus faecalis V583]
gi|227554777|ref|ZP_03984824.1| protein of hypothetical function DUF28 [Enterococcus faecalis HH22]
gi|256964553|ref|ZP_05568724.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257077537|ref|ZP_05571898.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|294780447|ref|ZP_06745812.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis PC1.1]
gi|422713602|ref|ZP_16770351.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309A]
gi|422716344|ref|ZP_16773051.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309B]
gi|422736378|ref|ZP_16792642.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1341]
gi|33516992|sp|Q838A9.1|Y663_ENTFA RecName: Full=Probable transcriptional regulatory protein EF_0663
gi|29342721|gb|AAO80486.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
V583]
gi|227176076|gb|EEI57048.1| protein of hypothetical function DUF28 [Enterococcus faecalis HH22]
gi|256955049|gb|EEU71681.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256985567|gb|EEU72869.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|294452446|gb|EFG20883.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis PC1.1]
gi|315166881|gb|EFU10898.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1341]
gi|315575399|gb|EFU87590.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309B]
gi|315581457|gb|EFU93648.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0309A]
Length = 242
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDIETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|416892604|ref|ZP_11923928.1| dATP pyrophosphohydrolase [Aggregatibacter aphrophilus ATCC 33389]
gi|347814302|gb|EGY30951.1| dATP pyrophosphohydrolase [Aggregatibacter aphrophilus ATCC 33389]
Length = 246
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D D+ I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQDDSSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GFK ES+ I M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFKIESAEITMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|381183452|ref|ZP_09892186.1| hypothetical protein KKC_09162 [Listeriaceae bacterium TTU M1-001]
gi|380316655|gb|EIA20040.1| hypothetical protein KKC_09162 [Listeriaceae bacterium TTU M1-001]
Length = 244
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKW NI+ +K D+KR KI ++ +E+ VA G +P N LRL ++KA AN+
Sbjct: 1 MAGHSKWKNIQGRKNAQDSKRAKIFQKLAKEIYVAAKNGPDPTLNPALRLVMDKAKAANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAIQK + N E NY EV YEGY +G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIDRAIQKASGNQSGE--NYDEVSYEGYGPSGVAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV ++F G L+ L + ++ L+ LA++ GAED L D I T
Sbjct: 119 NGGSLGETGSVAYLFNRKGYLVLLRENLDLSEDELMLLAIDAGAEDILT-SDEAFEIFTE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F+ +K LE G E++ + M P + + + +K+++ L+ DV+ VYTN
Sbjct: 178 ATDFLAVKEQLENAGLTFEAAELTMIPTIYQKIPENKQAEFEKMISLLEDDDDVQDVYTN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|85706421|ref|ZP_01037515.1| hypothetical protein ROS217_16040 [Roseovarius sp. 217]
gi|85669194|gb|EAQ24061.1| hypothetical protein ROS217_16040 [Roseovarius sp. 217]
Length = 246
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ ++ +E+ VA G+ +PD N +LRLAI++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKAQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + +Y E+RYEGY NG AIIV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDNIERAIKKA---MGGDAEDYEEIRYEGYGPNGVAIIVEAMTDNRNRTASNVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++ + + +T++ ALE GAED +D TI +
Sbjct: 118 KNGGNLGETGSVAFMFERKGEVTYPASVGDADTVMMAALEAGAEDVESGEDGH-TIWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E ++LE ++ S+ +V +P T KL KL+ L+ DV++V TN
Sbjct: 177 TDLSEAASALEEALGESNSTKLVWKPTTTTEMDLESMQKLMKLIEALEDDDDVQRVTTN 235
>gi|366163879|ref|ZP_09463634.1| hypothetical protein AcelC_09433 [Acetivibrio cellulolyticus CD2]
Length = 242
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 147/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK D+++GKI T++ RE+ + + G P++N KL+ I KA AN
Sbjct: 1 MSGHSKWANIKRKKEKTDSQKGKIFTKLGREITIVVRQGGPEPESNSKLKDVIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R I+K ++ ++ +Y E+ YEGY G A+IV+ +T+NR RT ++R+ F+
Sbjct: 61 MPNDNIIRCIKKAAGDV--DSASYEEIVYEGYGPGGVAVIVEAMTDNRNRTAGDVRHFFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V FMF G +L + K++ L+ ALE GAEDF D+D I TS
Sbjct: 119 KFGGNLGTTGCVSFMFDKKGVILIEKDGKIKEDDLMMEALEVGAEDFTADED-VYEITTS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYT 236
P +F ++ +LE G+ + + M P T D + I+ + +L+ L+ L DV+ VY
Sbjct: 178 PDEFSAVREALEKKGYDFVEADVEMVPQTMTKLTDPKQIEFMDRLIEHLEDLDDVQNVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|407715729|ref|YP_006837009.1| hypothetical protein Q91_0466 [Cycloclasticus sp. P1]
gi|407256065|gb|AFT66506.1| hypothetical protein Q91_0466 [Cycloclasticus sp. P1]
Length = 248
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G +PD N +LR A++K L N
Sbjct: 1 MAGHSKWANIRFRKGAQDAKRGKLFTKLIREITVATKAAGPDPDNNPRLRAAVDKGLSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I AI+K + +EN + E+RYEGY G AIIVDC+T+N+ RTV+ +R+ F+
Sbjct: 61 MKRDTIETAIKKGSGTTDSENFD--EIRYEGYGPAGIAIIVDCLTDNKNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV +MF+ G + ++ L+D A+E GA+D + D ++T
Sbjct: 119 KAGGNLGTSGSVDYMFQKLGAISLSSQLDEDRLMDAAIEAGADDVITHDDGSFEVLTPAE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F+ ++++L +GF E + + +R + +A K+ +LL+ L+ L DV+ VY+NA
Sbjct: 179 DFMMVRDALVESGFPYEHAEVTLRADNLSPVNEKDAEKVLRLLDVLEDLDDVQNVYSNA 237
>gi|430376970|ref|ZP_19431103.1| hypothetical protein MOMA_06231 [Moraxella macacae 0408225]
gi|429540107|gb|ELA08136.1| hypothetical protein MOMA_06231 [Moraxella macacae 0408225]
Length = 249
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 150/239 (62%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA +GKI T+I+RE+ A G+ +P N +LR +EKA AN
Sbjct: 1 MAGHSKWANIKHRKAKQDAAKGKIFTKIIREIVSAAKAGDPDPANNPRLRAVLEKANAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI + N+N+ E+ YEGY + G A++V+ +T+N RTV ++R+ F+
Sbjct: 61 MTKDVIKRAIDRGAGGGDNDNME--EITYEGYGIGGVAVLVETMTDNVNRTVGDVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL GSV ++F G++ ++T+++LALE GA D D ++ + ++T P
Sbjct: 119 KNGGNLGTSGSVAYLFNKRGEITVADVALEDTVMELALEAGASDIENDGES-LLVVTEPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F + ++L+ G K +++ + M P T+ + +A K+ K+++ L+ L DV+ VYTN
Sbjct: 178 NFGAVMDALQNAGIKVDNAEVTMSPSTSAEITNIDDAQKILKMIDMLEDLDDVQDVYTN 236
>gi|300862052|ref|ZP_07108132.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TUSoD Ef11]
gi|422739636|ref|ZP_16794810.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2141]
gi|428766190|ref|YP_007152301.1| DUF28 family protein [Enterococcus faecalis str. Symbioflor 1]
gi|300848577|gb|EFK76334.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TUSoD Ef11]
gi|315144554|gb|EFT88570.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX2141]
gi|427184363|emb|CCO71587.1| DUF28 family protein [Enterococcus faecalis str. Symbioflor 1]
Length = 242
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + D + +L+ L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLESLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|307272475|ref|ZP_07553728.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0855]
gi|306510760|gb|EFM79777.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0855]
Length = 250
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 9 MSGHSKWSNIQGRKNAQDAKRGKIFRKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 68
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 69 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 126
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 127 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDIETSPE-VFEIYT 185
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 186 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 245
Query: 237 NA 238
+A
Sbjct: 246 SA 247
>gi|260893481|ref|YP_003239578.1| hypothetical protein Adeg_1634 [Ammonifex degensii KC4]
gi|260865622|gb|ACX52728.1| protein of unknown function DUF28 [Ammonifex degensii KC4]
Length = 252
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWA IKRKK VDA+RGKI T++ RE+ VA+ G +P+ N +LR AI++A +AN
Sbjct: 1 MAGHSKWAQIKRKKAKVDAERGKIFTKLSREIMVAVRMGGGDPEANPRLRAAIDRAREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP NI RAIQK E Y EV YEGY G A+++ TNNR RT + +R++ +
Sbjct: 61 IPMENIKRAIQKALGEETGE--KYEEVFYEGYGPGGVALLIRTTTNNRNRTAAEVRHVLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL + G V ++F+ G + ++ + LL LA+E GA D L + ++ IIT+
Sbjct: 119 KFGGNLGEAGCVSWLFRSQGLITVRKDSGFSEEDLLLLAMEAGAND-LQETEDTFEIITA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P ++K L+ G ES+ + + P T + + EA+K+ +L+ L+ L DV++VY N
Sbjct: 178 PEDLAKVKQKLQEQGVPVESAELTLLPQTTVPLEGEEAVKVLRLVQALEDLDDVEEVYAN 237
>gi|251793069|ref|YP_003007795.1| hypothetical protein NT05HA_1356 [Aggregatibacter aphrophilus
NJ8700]
gi|422336610|ref|ZP_16417583.1| hypothetical protein HMPREF9335_00771 [Aggregatibacter aphrophilus
F0387]
gi|247534462|gb|ACS97708.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
gi|353346796|gb|EHB91081.1| hypothetical protein HMPREF9335_00771 [Aggregatibacter aphrophilus
F0387]
Length = 246
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D D+ I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQDDSSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GFK ES+ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFKIESAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|219871143|ref|YP_002475518.1| hypothetical protein HAPS_0943 [Haemophilus parasuis SH0165]
gi|254807278|sp|B8F5G8.1|Y943_HAEPS RecName: Full=Probable transcriptional regulatory protein HAPS_0943
gi|219691347|gb|ACL32570.1| aspartyl-tRNA synthetase [Haemophilus parasuis SH0165]
Length = 246
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTSSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASADEDALTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|295092959|emb|CBK82050.1| conserved hypothetical protein TIGR01033 [Coprococcus sp. ART55/1]
Length = 249
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 146/243 (60%), Gaps = 8/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSK+ANIK KK DA +GKI T I +E+ VA+ G NP+ N KLR I KA N
Sbjct: 1 MSGHSKFANIKHKKEKNDAAKGKIFTIIGKEIVVAVKEGGANPENNSKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R I++ + + +NY+ YEGY NG AIIVD +T+N+ RT +N+RN F
Sbjct: 61 MPNDTIKRGIERAAGDANS--VNYVVNTYEGYGPNGTAIIVDTLTDNKNRTAANVRNCFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K GGN+ G V +MF H GQ++ + + L+ +AL+ GAEDF D+D+ IIT
Sbjct: 119 KGGGNVGTTGCVSYMFDHKGQIIIAKEDCDIDADDLMMMALDAGAEDFS-DEDDSYEIIT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVY 235
+P F +++ SLE G K + + M P + D E + K ++++ L++ DV+ VY
Sbjct: 178 APEDFSQVRESLEKEGIKMAEAELTMIPQNYVDIDDPEVVKKFTRIIDMLEEDDDVQAVY 237
Query: 236 TNA 238
NA
Sbjct: 238 HNA 240
>gi|126735109|ref|ZP_01750855.1| hypothetical protein RCCS2_14569 [Roseobacter sp. CCS2]
gi|126715664|gb|EBA12529.1| hypothetical protein RCCS2_14569 [Roseobacter sp. CCS2]
Length = 249
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 150/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D R K+ +++ +E+ VA G+ +PD N +LRLA+++A ++
Sbjct: 1 MAGHSKWANIQHRKGRQDKLRSKLFSKLAKEITVAAKMGDPDPDKNPRLRLAVKEAKSSS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + NY E+RYEGY NG A+IV+ +T+NR RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKSQGG---DAENYDEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++++ + +T++ A+E GAED D DN + I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVVYPADVADADTVMMAAIEAGAEDVQSDDDNHV-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE ++ES+ ++ +P KL KLL+ L++ DV++V +N
Sbjct: 177 TDLNEVSTALEAELGESESTKLIWKPNMTTELDVEGLTKLMKLLDTLEEDDDVQRVTSN 235
>gi|376259562|ref|YP_005146282.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium sp.
BNL1100]
gi|373943556|gb|AEY64477.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
BNL1100]
Length = 246
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 144/239 (60%), Gaps = 7/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKR+K DA R KI T++ RE+++A+ G +P+ N KL+ I K N
Sbjct: 1 MSGHSKWANIKRQKGAADAVRAKIFTKLGREIQIAVRMGGADPNANSKLKDIIAKCKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R+I+K + + + NY E+ YEGY G A+I +C T+NR RT ++R+ F+
Sbjct: 61 MPNDNIQRSIKKASG--EADGSNYEEITYEGYGPGGVAVICECTTDNRNRTAGDLRHYFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL + G V FMF G ++ + K N TL+ AL+ GAEDF D DN I+T
Sbjct: 119 KFGGNLGQSGCVSFMFNKKGVIVIEKDDKVNEETLMMEALDAGAEDFDSD-DNCYEIVTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVY 235
P+ F ++ +LE G++ + + M P T + E IK + KL+ L+ L DV VY
Sbjct: 178 PADFSAVREALEAKGYEFIEAEVSMIPTTTTKLTEPEQIKFMDKLIEALEDLDDVSNVY 236
>gi|167855801|ref|ZP_02478554.1| hypothetical protein HPS_03174 [Haemophilus parasuis 29755]
gi|167853080|gb|EDS24341.1| hypothetical protein HPS_03174 [Haemophilus parasuis 29755]
Length = 246
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTSSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D+ I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASADEDALTEAAIEAGADDIQPQEDSSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGAVRDGIEAAGFKVENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|187251558|ref|YP_001876040.1| hypothetical protein Emin_1151 [Elusimicrobium minutum Pei191]
gi|226696237|sp|B2KDV7.1|Y1151_ELUMP RecName: Full=Probable transcriptional regulatory protein Emin_1151
gi|186971718|gb|ACC98703.1| Conserved hypothetical protein DUF28 [Elusimicrobium minutum
Pei191]
Length = 250
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 145/250 (58%), Gaps = 16/250 (6%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-----NNPDTNIKLRLAIEKA 55
M GHS WA IK KK ++D+KRGK+ TRI+RE+ +A G NNP +LR A+E A
Sbjct: 1 MGGHSHWAGIKHKKALLDSKRGKVFTRIIREITIAAKMGGAELENNP----RLRKAVEDA 56
Query: 56 LDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115
AN+P +NI RAI K + E Y E+ YEGY + A+IVDC T+N+ RT S IR
Sbjct: 57 KAANMPADNIKRAIMKGTGQL--EGATYEEITYEGYGPSSIAVIVDCTTDNKNRTFSEIR 114
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKI-T 173
IF GG++ G V +MFK G ++ T + +L+D+A+E GA+D I ++++
Sbjct: 115 KIFTSRGGSIGTTGCVSYMFKKKGLIIINKETISEESLMDIAIEAGADD--IKSESEVHE 172
Query: 174 IITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVK 232
+ T+P +K +LE G K ES+ + M P T D A + + K+++EL D K
Sbjct: 173 VFTAPESLDIVKKALEEKGVKTESATLTMIPDTETEITDENAAQSIMKMMDELDDHDDTK 232
Query: 233 KVYTNALIFD 242
VY+N I D
Sbjct: 233 AVYSNYNIPD 242
>gi|357416643|ref|YP_004929663.1| hypothetical protein DSC_04845 [Pseudoxanthomonas spadix BD-a59]
gi|355334221|gb|AER55622.1| hypothetical protein DSC_04845 [Pseudoxanthomonas spadix BD-a59]
Length = 244
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 148/236 (62%), Gaps = 6/236 (2%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DA+RGKI T+I+RE+ VA G +P N LR A++K L AN+ K+
Sbjct: 2 GRGPSIEARKNASDARRGKIFTKIIREISVAARAGGGDPHHNPSLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y +RYEGY+ G A+IVD +T+NR+RTV+++R+ F K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYESIRYEGYAPGGVAVIVDALTDNRVRTVADVRHAFAKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMF+ G L F P ++ + + A+E GAED ++ D I ++T+P F
Sbjct: 120 NMGTEGSVAFMFRRVGVLSFAPGADEDAVTEAAIEAGAEDVVVYPDDGSIDVLTAPEAFE 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+K ++ GF + I R +I DGE A++++KLL+ L+ L DV++VY+N
Sbjct: 180 TVKQAMAAAGFTPGYAEITFRADNDIAV-DGETAVQVRKLLDMLEDLDDVQEVYSN 234
>gi|407893601|ref|ZP_11152631.1| hypothetical protein Dmas2_06105 [Diplorickettsia massiliensis 20B]
Length = 238
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 138/238 (57%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ VA G +TN +LRLA++K L AN
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIREINVAARIGGGDINTNPRLRLAVDKGLAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ K+ I RAI++ + + + E+RYEGY G A++VD +T+NR RTV+ +R+ F
Sbjct: 61 MTKDTIERAIKRGAGGLDGQQME--EIRYEGYGPKGLAVLVDTLTDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL GSV ++F G + F P + +L++ALE GAED + D I+TS +
Sbjct: 119 KCGGNLGTTGSVAYLFSKKGVITFAPGINEEKVLEIALEVGAEDVIHHPDGSTDILTSET 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ S + + + K+++LLN L+ L DV+ VYTN
Sbjct: 179 VLPTLNQRFVQEKLDPVQSEVTWIASIQVELNQEDQEKVERLLNMLEDLDDVQAVYTN 236
>gi|297183451|gb|ADI19583.1| uncharacterized conserved protein [uncultured Acidobacteria
bacterium HF0770_27F21]
Length = 250
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 144/242 (59%), Gaps = 5/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK DA RGK+ +R+++E+ VA G + ++N +LR A+ A N
Sbjct: 1 MSGHSKWSTIKRKKGAADAARGKVFSRLVKEITVAAKQGGADSESNPRLRTAVATAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQ+ + + Y EV YEGY G A++V T+NR RTV+ IR IF
Sbjct: 61 MPADNIKRAIQRGTGELPG--VIYEEVNYEGYGPGGVALLVQAATDNRNRTVAEIRKIFE 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+ GG+LS+ SV +MFK G L ++ ++ LL +AL+ GA D D D + T+
Sbjct: 119 RAGGHLSELNSVAWMFKQAGHFLIDAHSIGEDDLLLVALDAGAADVSAD-DGMYEVTTTT 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+KF ++ + + G K E + + M P + I + EA + KL+ +L+ DV+ VYTNA
Sbjct: 178 TKFAGVREAFDNNGIKCEHAELAMLPASYIKLQGSEAKQCLKLMEKLEDHDDVQGVYTNA 237
Query: 239 LI 240
I
Sbjct: 238 DI 239
>gi|416103194|ref|ZP_11589187.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|444346812|ref|ZP_21154773.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|348007929|gb|EGY48208.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|443541242|gb|ELT51696.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
Length = 246
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 145/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + + N+ E R YEGY GAA++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGDGDDTNM---ETRVYEGYGPGGAAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|268317946|ref|YP_003291665.1| hypothetical protein Rmar_2399 [Rhodothermus marinus DSM 4252]
gi|345304226|ref|YP_004826128.1| hypothetical protein Rhom172_2398 [Rhodothermus marinus
SG0.5JP17-172]
gi|262335480|gb|ACY49277.1| protein of unknown function DUF28 [Rhodothermus marinus DSM 4252]
gi|345113459|gb|AEN74291.1| protein of unknown function DUF28 [Rhodothermus marinus
SG0.5JP17-172]
Length = 248
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 148/246 (60%), Gaps = 10/246 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGH+KW+ +KR+K +VDA++ KI R+ R++ VA G +P+ N +L AIE+A N
Sbjct: 1 MAGHNKWSKVKRQKAVVDARKSKIWARLSRDIIVAAREGGGDPEANPRLAQAIERARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ I+ E+ Y+EV YEGY+ G A+ ++ +T+N RTVS IR++F
Sbjct: 61 MPKENIERAIKRGTGEIQGED--YVEVTYEGYAPGGVAVFIEALTDNTNRTVSEIRHLFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GG+L + GSV ++F+ G ++ +P + L +L E GAED + KD+ ++T+
Sbjct: 119 KAGGSLGQPGSVAYLFERKG-VIEIPVEGHDELELFELVAEAGAED--LTKDDDTFVVTT 175
Query: 178 P-SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F ++ +L G + +G+ P T + EA K+ LL L+ DV+ VYT
Sbjct: 176 PVETFSDVLEALRSAGIEPVEAGLQRVPTTTVTLPPEEAKKVVALLEALEAHQDVQNVYT 235
Query: 237 NALIFD 242
L FD
Sbjct: 236 T-LNFD 240
>gi|56695969|ref|YP_166323.1| hypothetical protein SPO1072 [Ruegeria pomeroyi DSS-3]
gi|67462019|sp|Q5LUI2.1|Y1072_SILPO RecName: Full=Probable transcriptional regulatory protein SPO1072
gi|56677706|gb|AAV94372.1| conserved hypothetical protein TIGR01033 [Ruegeria pomeroyi DSS-3]
Length = 246
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 153/240 (63%), Gaps = 8/240 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ ++ +E+ VA G+ +PD N +LRLAI++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKFSKEITVAAKMGDPDPDKNPRLRLAIKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I + Y E+RYEGY NG A+IV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDNIERAIKKA---IGGDGDAYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + GSV FMF+ G++++ + +T++ A+E GAED ++ + I +
Sbjct: 118 KHGGNLGETGSVGFMFERKGEVVYPASVGDADTVMMAAIEAGAEDVESSEEGHV-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE +++S+ +V +P T D EA+ KL KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSTALEAELGESDSTKLVWKPSTTTEL-DLEAMQKLMKLVDALEDDDDVQRVTTN 235
>gi|312622889|ref|YP_004024502.1| hypothetical protein Calkro_1837 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203356|gb|ADQ46683.1| protein of unknown function DUF28 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 243
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 146/240 (60%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DA++GK+ T++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MAGHSKWANIKHKKEKTDAQKGKLFTKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I++ I + Y ++ YEGY G A+IV+ +TNNR RT +R+IF+
Sbjct: 61 MPMDKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + G V +MF G ++ + ++ +++ ALE GAEDF +D+ IITS
Sbjct: 119 KNGGNLGQTGCVSWMFSRKGVIVIEKESFPDEDFVMEKALEYGAEDFS-SEDDIYEIITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +++ LE GF + I M P T + +A K+++L++ L+ DVK+VY N
Sbjct: 178 PEDFSKVREGLEKEGFTFIRAQIEMIPQTYVKLSSEDAQKMRRLIDMLEDNDDVKEVYHN 237
>gi|320537069|ref|ZP_08037047.1| conserved hypothetical protein TIGR01033 [Treponema phagedenis
F0421]
gi|320146072|gb|EFW37710.1| conserved hypothetical protein TIGR01033 [Treponema phagedenis
F0421]
Length = 247
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK K DAKRG++ T+ ++E+ +A G +P N +LR AI KA AN
Sbjct: 1 MSGHSKWATIKHAKGAADAKRGQMFTKFIKEISIAARMGGGDPAANPRLRTAILKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + N Y E+ YEGY+ G AI+V+ +T+N+ R +N+RN+F+
Sbjct: 61 MPKDNIERAIKKGTGELGGSN--YEELIYEGYAPGGVAILVEVLTDNKNRAAANVRNLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL GSV +MF G + + + ++D ALE GAED + ++ IT+ T P
Sbjct: 119 KNGGNLGSTGSVAYMFNRKGVIEYDAEVASEEAVMDAALEAGAED-IQNEGGIITVTTDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F + +L+ G ++ S+ I M P T + K+ K+++ +++ DV+ VY+N
Sbjct: 178 NDFETVLEALQTKGLESVSAEISMVPDTYMSLDAETTRKVLKMIDRIEEDDDVQNVYSNI 237
Query: 239 LIFD 242
+ D
Sbjct: 238 DVPD 241
>gi|313891358|ref|ZP_07824974.1| DNA-binding regulatory protein, YebC/PmpR family [Dialister
microaerophilus UPII 345-E]
gi|329121411|ref|ZP_08250036.1| glucose-1-phosphate adenylyltransferase [Dialister micraerophilus
DSM 19965]
gi|313120133|gb|EFR43309.1| DNA-binding regulatory protein, YebC/PmpR family [Dialister
microaerophilus UPII 345-E]
gi|327469701|gb|EGF15168.1| glucose-1-phosphate adenylyltransferase [Dialister micraerophilus
DSM 19965]
Length = 240
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 145/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA R +I T+I +E+ +A G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKHKKGKTDALRARITTKISKEITLAARMGGGDPVGNMRLKLALTKAKQNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI K E + E+ YEGY G AIIV+C T+N+ RT +++R F
Sbjct: 61 VPKENIQRAIAKGIGATSGEG--FEEMSYEGYGPGGVAIIVECSTDNKNRTAADVRYAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+GG++ G V +MFK G ++ ++TL+ LAL+ GAED ++ IIT P
Sbjct: 119 HHGGSIGTPGCVGWMFKKKGIIIVDKEVADEDTLMLLALDSGAEDVQAHEE-VYEIITEP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
FI + +LE G + ESS + M P N V DGE A +QK++ L+++ DV++VY N
Sbjct: 178 DAFIAVSEALEKEGIEVESSEVSMIP-DNTVSLDGEKAESMQKMIEALEEIDDVQEVYHN 236
Query: 238 A 238
A
Sbjct: 237 A 237
>gi|291286411|ref|YP_003503227.1| hypothetical protein Dacet_0473 [Denitrovibrio acetiphilus DSM
12809]
gi|290883571|gb|ADD67271.1| protein of unknown function DUF28 [Denitrovibrio acetiphilus DSM
12809]
Length = 249
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 150/239 (62%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GK T++ +EL VA G +P+ N +LR+A++KA AN
Sbjct: 1 MAGHSKWANIKHRKAAQDAKKGKAFTKVAKELTVAAKIGGADPEMNPRLRVALDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + + Y ++ YEGY G AI+V +T N+ RTV+ +R+ +
Sbjct: 61 LPKDNVERAIKKGTG--EGNDAVYEDMVYEGYGPGGVAILVKALTENKNRTVAEVRSTMS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG++ + G V ++F++ G + ++ + TL++LALE GA+D ++D+ + ++T P
Sbjct: 119 KKGGSMGEPGCVAWIFENKGLIEINKDSVDEETLMELALEAGADD-VVDEGDVFQVVTEP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
S++ +KN++E G S + M+P I + KL + L+ L DV++V++N
Sbjct: 178 SEYFTVKNAIEEKGLAMSFSEVSMKPKNTIPLSGSDLKKLFTITEALEDLDDVQEVFSN 236
>gi|383753877|ref|YP_005432780.1| hypothetical protein SELR_10490 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365929|dbj|BAL82757.1| hypothetical protein SELR_10490 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 243
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 150/242 (61%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA RG+I T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRGRITTKIGREITIAVRMGGGDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK +E NY E+ YEGY G A+++D +T+NR RT +++R++F+
Sbjct: 61 IPKDNINRAIQKGLG--ASEGSNYEELTYEGYGPAGTAVMLDILTDNRNRTAADVRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL ++G V +MF + +F+ + ++ L+++ LE GA+D + D+ + I
Sbjct: 119 KFGGNLGQDGCVGWMFNK--KAIFVVEKEVFDNEDELMEIVLEAGADD-MKDEGDVFEIT 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
P F I+ +L G + S+ I M P + +A K+QKL + L+ DV+ VY
Sbjct: 176 AEPDAFDAIEAALAEKGIETASAEITMVPENTVKLSGEDAEKMQKLEDALEDNDDVQNVY 235
Query: 236 TN 237
+N
Sbjct: 236 SN 237
>gi|336323918|ref|YP_004603885.1| hypothetical protein Flexsi_1670 [Flexistipes sinusarabici DSM
4947]
gi|336107499|gb|AEI15317.1| UPF0082 protein yeeN [Flexistipes sinusarabici DSM 4947]
Length = 247
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 147/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAK+GK+ T++ +E+ VA G +P+ N +LR+A++KA N
Sbjct: 1 MAGHSKWANIKHRKAAQDAKKGKVFTKVAKEITVAAKLGGGDPEMNPRLRMALDKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + N+ +V YEGY G AI+V +T+N+ RTVS +R+
Sbjct: 61 LPKDNVDRAIKKGTG--EGNEANFEDVMYEGYGPEGVAILVQALTDNKNRTVSEVRSTMA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GN+ + G V ++F+ G + + L N ++ ++ LA++ GAED D+ II P
Sbjct: 119 KKNGNMGEAGCVSWIFEKKGVISIPLNNVGEDQIMSLAIDAGAEDVET-GDDSYEIICDP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ + E+K ++E E + + MRP T I K A K+ L+ L+ L DV++VY N
Sbjct: 178 ADYEEVKKTIESESISYEYAEVTMRPKTTIEVKGNNAKKVINLIEALEDLDDVQEVYANF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIDD 241
>gi|163745948|ref|ZP_02153307.1| hypothetical protein OIHEL45_10188 [Oceanibulbus indolifex HEL-45]
gi|161380693|gb|EDQ05103.1| hypothetical protein OIHEL45_10188 [Oceanibulbus indolifex HEL-45]
Length = 246
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 154/240 (64%), Gaps = 8/240 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D R K+ +++ +E+ +A G+ +P+ N +LR+A+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDKLRAKVFSKLSKEITIAAKMGDPDPEKNPRLRMAVKEAKGQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I E +Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F
Sbjct: 61 MPKDNIERAIKKA---IGGEGEDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++++ + +T++ A+E GAED +D + I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGEVIYPASVGDADTVMMAAIEAGAEDVESSEDGHV-IYCTD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVYTN 237
+ ++ +LE ++ES+ ++ RP T D EA+ KL KL++ L++ DV++V TN
Sbjct: 177 TDLNDVSTALEAELGESESTKLIWRPTTTTEM-DLEAMEKLMKLVDALEEDDDVQRVTTN 235
>gi|51246760|ref|YP_066644.1| hypothetical protein DP2908 [Desulfotalea psychrophila LSv54]
gi|60390894|sp|Q6AJ43.1|Y2908_DESPS RecName: Full=Probable transcriptional regulatory protein DP2908
gi|50877797|emb|CAG37637.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 250
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 149/240 (62%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK DAKRGKI TR+++E+ VA G +P+ N +LR AI A N
Sbjct: 1 MSGHSKWSTIKRKKGANDAKRGKIFTRLIKEITVAARGGGGDPEGNPRLRSAILVAKSEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I E Y E+ YEGY G A++V+C+T+NR RTV++IR+ F
Sbjct: 61 MPKDNITRAIKKGTGEIAGEV--YDEILYEGYGPGGVAVLVECMTDNRNRTVADIRHYFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KN GNL + G V +MF+ G +L T ++ L+D ALE GAED +++ + + ++T+P
Sbjct: 119 KNNGNLGEAGCVSWMFEKKGLILVDKATITEDELMDQALEAGAED-VVEDETEFQVLTNP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYTN 237
++ ++ ++E G + I M P + D + K L +LL L+ DV+ V++N
Sbjct: 178 TELDAVRGAMEAAGIAFVDASISMLPKNVVDVTDEKVGKNLLRLLESLEDHDDVQNVHSN 237
>gi|261868505|ref|YP_003256427.1| hypothetical protein D11S_1850 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365966262|ref|YP_004947824.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|416075942|ref|ZP_11585210.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|416089733|ref|ZP_11587975.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|444344625|ref|ZP_21152846.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|444348898|ref|ZP_21156449.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
gi|261413837|gb|ACX83208.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|348005485|gb|EGY45963.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|348009328|gb|EGY49488.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|365745175|gb|AEW76080.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|443543759|gb|ELT53901.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|443545971|gb|ELT55694.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
Length = 246
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY GAA++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGAAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|429766217|ref|ZP_19298491.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
celatum DSM 1785]
gi|429185197|gb|EKY26186.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
celatum DSM 1785]
Length = 246
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 146/240 (60%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T+I REL +A+ N G +PD N KLR AI KA AN
Sbjct: 1 MSGHSKWHNIQNKKGKADAKRGKIFTKIGRELMIAVKNGGPDPDNNPKLRDAIAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + + R+I+K + + ++Y + YEGY +G A+IVD +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTVQRSIKKASGELGA--VDYERIVYEGYGPSGVAVIVDTLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ G V FMF+ G+++ + + L+ +AL+ GAEDF D++ I T P
Sbjct: 119 KGGGNMGTTGCVGFMFQEKGEIVIEKGDLDEEELMMMALDAGAEDFNSDEEEVFIITTEP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE G + + + M P T + A K QK+L+ L+ DV++VY NA
Sbjct: 179 DDFGTVREALEAEGLEFLEAAVKMIPDTYTEIDEDAAKKFQKMLDLLEDDDDVQEVYHNA 238
>gi|328950610|ref|YP_004367945.1| hypothetical protein Marky_1093 [Marinithermus hydrothermalis DSM
14884]
gi|328450934|gb|AEB11835.1| UPF0082 protein yeeN [Marinithermus hydrothermalis DSM 14884]
Length = 245
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 144/239 (60%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
MAGHSKWA IKRKK DAKRGK+ T+ +R ++ A G +PD N++LR AIE A
Sbjct: 1 MAGHSKWAQIKRKKAANDAKRGKMITKHLRAIQAAARAGGSPDPAANVQLRNAIEAARRD 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
++P++NI R + K + Y E+ YEGY+ G A++V +T+NR RT +R++F
Sbjct: 61 DVPQDNIDRLLAKLRGEGEGAT-QYEEIVYEGYAPGGVALLVYALTDNRNRTAGEVRHVF 119
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG+L G+V + F+ G L+ L +T + + A+E GA D L++ + + + T P
Sbjct: 120 TKHGGSLGASGAVAWQFERRG-LIVLKDT-SDAAQEAAIELGAVD-LLESEGVLEVYTEP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++ + LE GF+AES I M P + D EA K+ ++++ L+ L DV+ VY+N
Sbjct: 177 TEVYAVAKGLEERGFRAESVEITMLPQNTVRLSDEEAQKVLRMIDALEDLDDVQNVYSN 235
>gi|255973735|ref|ZP_05424321.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256957473|ref|ZP_05561644.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|307278247|ref|ZP_07559326.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0860]
gi|397699055|ref|YP_006536843.1| hypothetical protein EFD32_0476 [Enterococcus faecalis D32]
gi|422700819|ref|ZP_16758662.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1342]
gi|422711574|ref|ZP_16768503.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0027]
gi|422867918|ref|ZP_16914480.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1467]
gi|255966607|gb|EET97229.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256947969|gb|EEU64601.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|306504998|gb|EFM74189.1| hypothetical protein TIGR01033 [Enterococcus faecalis TX0860]
gi|315034409|gb|EFT46341.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX0027]
gi|315170771|gb|EFU14788.1| conserved hypothetical protein TIGR01033 [Enterococcus faecalis
TX1342]
gi|329576934|gb|EGG58417.1| DNA-binding regulatory protein, YebC/PmpR family [Enterococcus
faecalis TX1467]
gi|397335694|gb|AFO43366.1| hypothetical protein EFD32_0476 [Enterococcus faecalis D32]
Length = 242
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F ++++LE G+ + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 178 VPEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|340027486|ref|ZP_08663549.1| hypothetical protein PaTRP_02139 [Paracoccus sp. TRP]
Length = 246
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAIRSKLFSKLAKEITVAAKMGDPDPEKNPRLRLAVKEAKTNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + NY E+RYEGY NG AIIV+ +T+NR RT SN+R+ F
Sbjct: 61 VPKDVIERAIKKSQGG---DAENYDEIRYEGYGPNGIAIIVEAMTDNRNRTASNVRSYFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG+L + GSV FMF G++ + P +T++ A+E GAED D+D I TS
Sbjct: 118 KHGGDLGQTGSVSFMFDRKGEIFYKPEAGDADTVMMAAIEAGAEDVESDEDGHW-IYTSD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE + ++E S ++ +P A KL KL+ L+ DV+ V N
Sbjct: 177 TDLAEVSQALEASLGESEHSKLIWKPQAPTEVDLETAQKLMKLIEALEDDDDVQNVTGN 235
>gi|291533992|emb|CBL07105.1| conserved hypothetical protein TIGR01033 [Megamonas hypermegale
ART12/1]
Length = 243
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 152/242 (62%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA R K+ T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRAKMTTKIGREITIAVRMGGADPTGNMRLKLALSKAKSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK ++ NY E+ YEGY G+A++++ +T+NR RT ++IR++F+
Sbjct: 61 IPKDNINRAIQKGLG--ASDGSNYEELIYEGYGPAGSAVMLEVMTDNRNRTAADIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL + G V +MF + +F+ + + + +L+ +AL+ GAEDF +D+ I
Sbjct: 119 KYGGNLGETGCVGWMFHK--KAIFVVDKEAFDDEESLMMIALDAGAEDFKA-EDDSFEIT 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
+P F I +LE + S I M P T + + +A K+Q LL+ L++ DV+ VY
Sbjct: 176 AAPEDFDAISQALEENNIETVESEITMIPDTTVKVEGKDAEKMQTLLDMLEEHDDVQNVY 235
Query: 236 TN 237
+N
Sbjct: 236 SN 237
>gi|387120412|ref|YP_006286295.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415763621|ref|ZP_11482170.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|416031456|ref|ZP_11572526.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|416066874|ref|ZP_11582121.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|444334505|ref|ZP_21150033.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
gi|348001601|gb|EGY42336.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|348002402|gb|EGY43091.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348654513|gb|EGY70126.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|385874904|gb|AFI86463.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|443550289|gb|ELT58670.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
Length = 246
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY GAA++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGAAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|146312078|ref|YP_001177152.1| hypothetical protein Ent638_2432 [Enterobacter sp. 638]
gi|166987476|sp|A4WBM1.1|Y2432_ENT38 RecName: Full=Probable transcriptional regulatory protein
Ent638_2432
gi|145318954|gb|ABP61101.1| protein of unknown function DUF28 [Enterobacter sp. 638]
Length = 246
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G + +N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDAGSNPRLRAAIDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + + N+ I YEGY G A++V+C+++NR RTV+ +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDDDANMETI--IYEGYGPGGTAVMVECLSDNRNRTVAEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++ +++ ALE GAED + D I + T+
Sbjct: 119 KTGGNLGTDGSVAYLFSKKGVISFDAG-DEDAIMEAALEAGAEDVVTFDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
+ ++++L G KA+++ + M P T A KL +L++ L+ DV++VY N
Sbjct: 178 EMGAVRDALAAMGLKADNAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHNGE 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|358010111|ref|ZP_09141921.1| hypothetical protein AP8-3_01237 [Acinetobacter sp. P8-3-8]
Length = 249
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 146/244 (59%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DA R K+ T+ +RE+ A G + +N +LR IEKAL AN
Sbjct: 1 MAGHSKWANTKHRKAKQDASRAKVFTKFIREIVTAARLGGGDVASNPRLRAVIEKALVAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA + EN + EV YEGY V G A+IV+ +T+N RTV ++R+ F+
Sbjct: 61 MTRDTINRATARGVGG--EENADLKEVTYEGYGVGGVAVIVETMTDNLNRTVPDVRHCFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GNL GSV +MF G++ F + ++ ++++ALE GAED + +D +I +IT+P
Sbjct: 119 KTNGNLGTAGSVAYMFTKRGEITFEDVSLEDKIMEVALEAGAEDIEVSED-EILVITTPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKL-QKLLNELKKLHDVKKVYTNA 238
F ++++L G K++++ + M P T D + KL K+++ + L DV+ VYTN
Sbjct: 178 TFGTVQDALAAAGLKSDNAEVTMSPSTKAEITDIDQAKLILKMIDMFEDLDDVQNVYTNV 237
Query: 239 LIFD 242
D
Sbjct: 238 EFSD 241
>gi|296331673|ref|ZP_06874142.1| hypothetical protein BSU6633_11223 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675368|ref|YP_003867040.1| hypothetical protein BSUW23_13470 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151268|gb|EFG92148.1| hypothetical protein BSU6633_11223 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413612|gb|ADM38731.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 240
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 151/243 (62%), Gaps = 12/243 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K DAKRGKI ++ +E+ VA G +P+ N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K ++ + +Y E+ YEGY +G A++V+C+T+N+ RT SN+R FN
Sbjct: 61 MPNENIDRAIKKAAGSL--DGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT-----LLDLALEKGAEDFLIDKDNKITI 174
KNGG+L + G V F+F+ G + + T + +LD+ LE G E+ ++D + +
Sbjct: 119 KNGGSLGESGCVAFLFERKG-FIAIDRTDRQIEEDELMLDV-LEAGGEELQTEED-QYEV 175
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
+T P +F E+K +L+ + + S+ + M P T D KL+KL++ L+ DV++V
Sbjct: 176 LTEPDRFEEVKTALK-SKYPISSAEVTMLPKTYADADDQAVEKLEKLISILEDDDDVQEV 234
Query: 235 YTN 237
YTN
Sbjct: 235 YTN 237
>gi|257464829|ref|ZP_05629200.1| hypothetical protein AM202_06235 [Actinobacillus minor 202]
gi|257450489|gb|EEV24532.1| hypothetical protein AM202_06235 [Actinobacillus minor 202]
Length = 246
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASADEDALTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|315634726|ref|ZP_07890010.1| YebC like protein [Aggregatibacter segnis ATCC 33393]
gi|315476674|gb|EFU67422.1| YebC like protein [Aggregatibacter segnis ATCC 33393]
Length = 246
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G +L L ++ L++ A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKGLILVL-QADEDALMEAAIEAGADDVQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++ +E GFK ES+ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EELGAVRDGIEAAGFKIESAEVTMIPSTTVDLDAENAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|269103020|ref|ZP_06155717.1| hypothetical protein VDA_002446 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162918|gb|EEZ41414.1| hypothetical protein VDA_002446 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 248
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 151/247 (61%), Gaps = 11/247 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-----NNPDTNIKLRLAIEKA 55
MAGHSK+ANIK +K DAKRGKI T+++RE+ V+ G NNP +LR AI+KA
Sbjct: 1 MAGHSKFANIKHRKAAQDAKRGKIFTKLIREIVVSAKEGGAEVENNP----RLRAAIDKA 56
Query: 56 LDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115
L N+ ++ I RA+ + +N+ V YEGY G A++V+C+T+NR RTVS +R
Sbjct: 57 LSNNMTRDTINRAVTRGAGGDGEDNMET--VIYEGYGPAGTAVMVECMTDNRNRTVSAVR 114
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+ F+K GGNL +GSV ++F G + + P ++ +++ ALE GA+D + D I +
Sbjct: 115 HAFSKAGGNLGTDGSVSYLFDKKGVISYAPGLDEDAVMEAALEAGADDVETNDDGSIDVY 174
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P +F +K++++ GF+A ++ + + P T A KL +L++ L L DV++VY
Sbjct: 175 TTPKEFGAVKDAMDAAGFEAANAEVTLVPSTKADLDITTAPKLMRLIDVLDDLDDVQEVY 234
Query: 236 TNALIFD 242
N + D
Sbjct: 235 HNGDMSD 241
>gi|148269594|ref|YP_001244054.1| hypothetical protein Tpet_0454 [Thermotoga petrophila RKU-1]
gi|281411688|ref|YP_003345767.1| hypothetical protein Tnap_0248 [Thermotoga naphthophila RKU-10]
gi|166227268|sp|A5IJV5.1|Y454_THEP1 RecName: Full=Probable transcriptional regulatory protein Tpet_0454
gi|147735138|gb|ABQ46478.1| protein of unknown function DUF28 [Thermotoga petrophila RKU-1]
gi|281372791|gb|ADA66353.1| protein of unknown function DUF28 [Thermotoga naphthophila RKU-10]
Length = 253
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 154/241 (63%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ KI T+++RE+ VA G N +TN +LR A+EKA N
Sbjct: 1 MSGHNKWANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVEKARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ + E ++Y EV YEGY+ G A+ + +T+N+ RT +R++FN
Sbjct: 61 MPKENIERAIKRGTGEL--EGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL---ALEKGAEDFLIDKDNKITIIT 176
K GG+L++ GSV ++F+ G ++ +P K L +L A++ GAED + D ++ I IIT
Sbjct: 119 KYGGSLAESGSVSWIFERKG-VIEIPRDKVKDLEELMMIAIDAGAED-IKDTEDPIQIIT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P E+K+ LE G++ E+ + P + +A K+ + LN L+ + DV++VY+
Sbjct: 177 TPENLSEVKSKLEEAGYEVEAK-VTFIPKNTMKVTGKDAEKVLEFLNALEDMDDVQEVYS 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|332981535|ref|YP_004462976.1| hypothetical protein Mahau_0956 [Mahella australiensis 50-1 BON]
gi|332699213|gb|AEE96154.1| protein of unknown function DUF28 [Mahella australiensis 50-1 BON]
Length = 250
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 149/241 (61%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA+RGKI T+I REL +A+ G +NP+ N LR AI KA N
Sbjct: 1 MSGHSKWANIKRKKEATDAQRGKIFTKIGRELAIAVRHGGDNPEANSTLRDAIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R I+K + +++NY E+ YEGY G AIIV+ ++NR RT S+IR++F+
Sbjct: 61 MPNDTIERIIKKAAGAL--DSVNYEELVYEGYGPGGVAIIVEATSDNRNRTSSDIRHLFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K+GG+L + G V++MF G L+ + ++ +L +ALE GAED LI +D+ I T
Sbjct: 119 KSGGSLGETGCVMWMFDRKGVLVVDRDAVDIDEDDMLMIALEAGAED-LITQDDAYEIRT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G S+ + + P + A K+ L+++L DV+ VY
Sbjct: 178 APEDFASVRDTLEKQGIPFISAQLELIPKVTVSPDVEAARKVLNLIDKLDDHDDVQNVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|295114114|emb|CBL32751.1| conserved hypothetical protein TIGR01033 [Enterococcus sp. 7L76]
Length = 242
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 147/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE G+ + + M P T + + + +L++L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQAGYSLAQAELTMVPQTLLTLNEEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|148244520|ref|YP_001219214.1| hypothetical protein COSY_0365 [Candidatus Vesicomyosocius okutanii
HA]
gi|166232624|sp|A5CX42.1|Y365_VESOH RecName: Full=Probable transcriptional regulatory protein COSY_0365
gi|146326347|dbj|BAF61490.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 246
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 150/247 (60%), Gaps = 12/247 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-----NNPDTNIKLRLAIEKA 55
MAGHSKW NI+ +K I D KRGKI + ++E+ +A G NNP LR+ I++A
Sbjct: 1 MAGHSKWHNIQHRKGIQDVKRGKIFAKFIKEIIIATKTGGSVIENNP----SLRMVIDRA 56
Query: 56 LDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115
L AN+ +N I A+++ + ++ ++N Y EVRYEGY + G AIIVD +T+NR RTV+NIR
Sbjct: 57 LAANMKRNTIENAVKRGSCDLDDKN--YDEVRYEGYGLAGTAIIVDTLTDNRNRTVANIR 114
Query: 116 NIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+ F+K GGNLS EGSV ++F G + F ++ ++++AL+ GA+D + + + I +I
Sbjct: 115 HAFSKYGGNLSIEGSVSYLFIKQGFINFETGDEEQ-IMEVALDAGAKDIITNDNGSIYVI 173
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+ F I+N+L + S + M+P I K KL + LK L D ++VY
Sbjct: 174 TTTEDFFTIRNTLITARLEPSHSEVTMKPINYIKLNLHNTEKFIKLTDSLKDLDDTREVY 233
Query: 236 TNALIFD 242
NA I D
Sbjct: 234 HNADISD 240
>gi|406942523|gb|EKD74739.1| hypothetical protein ACD_44C00350G0012 [uncultured bacterium]
Length = 238
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 142/240 (59%), Gaps = 3/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DAKRGK+ T+++RE+ V A G + TN +LR A++KAL N
Sbjct: 1 MAGHSKWANIQHRKNAQDAKRGKLFTKLIREITVSASQGGADTATNPRLRTAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + +NI I YEGY G A++V+C+T+NR RT +R+ F
Sbjct: 61 MTRDTVERAIKRGAGGAEGKNIASI--CYEGYGPGGVAVLVECLTDNRNRTAGEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL EGSV ++F G + F P + +L++ALE+ D + +D + +I PS
Sbjct: 119 KSGGNLGTEGSVSYLFSKRGMITFAPGKQNEKILEIALEQDVLDVIDHEDLSVDVIIEPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
KF +K + + + + T + ++ K+ KL+ L+ L DV+ VYTN L
Sbjct: 179 KFEMVKKIFDQKKINYAHADVTLLAATQVSVEEETQEKINKLIEMLEDLDDVQDVYTNCL 238
>gi|84686295|ref|ZP_01014190.1| hypothetical protein 1099457000256_RB2654_08827 [Maritimibacter
alkaliphilus HTCC2654]
gi|84665822|gb|EAQ12297.1| hypothetical protein RB2654_08827 [Rhodobacterales bacterium
HTCC2654]
Length = 246
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 149/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPDKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + E +Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKSQAG---EGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++++ + +T++ A+E GA D +D I I +
Sbjct: 118 KNGGNLGETGSVGFMFDRMGEVVYPASVGDADTVMMAAIEAGAMDVESSEDGHI-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE ++ES+ ++ +P T KL KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSTALEAELGESESTKLIWKPTTTTEMDLESMQKLMKLIDALEDDDDVQRVTTN 235
>gi|52081262|ref|YP_080053.1| hypothetical protein BL01150 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319644772|ref|ZP_07999005.1| hypothetical protein HMPREF1012_00038 [Bacillus sp. BT1B_CT2]
gi|404490141|ref|YP_006714247.1| hypothetical protein BLi02909 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683242|ref|ZP_17658081.1| hypothetical protein MUY_03095 [Bacillus licheniformis WX-02]
gi|67462036|sp|Q65GN7.1|Y2909_BACLD RecName: Full=Probable transcriptional regulatory protein
BLi02909/BL01150
gi|52004473|gb|AAU24415.1| conserved protein YrbC [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349143|gb|AAU41777.1| DNA-binding regulatory protein YrbC [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317392581|gb|EFV73375.1| hypothetical protein HMPREF1012_00038 [Bacillus sp. BT1B_CT2]
gi|383440016|gb|EID47791.1| hypothetical protein MUY_03095 [Bacillus licheniformis WX-02]
Length = 240
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 151/242 (62%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGKI ++ +E+ VA G +P++N LRL I+KA +AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKIFMKLAKEIYVAAKEGGPDPESNASLRLVIDKAKNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + + + +Y E+ YEGY +G A++V C+T+N+ RT +++R F+
Sbjct: 61 MPNDNIDRAIKKASGS--QDGKSYEEITYEGYGPSGVAVMVKCLTDNKNRTATSVRTAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
KNGG+L + G V +MF G + L ++ +L++ ++ GAE+ L + I
Sbjct: 119 KNGGSLGETGCVSYMFDRKGYIAIEREDLEIDEEEFMLEV-IDAGAEE-LETSEELFEIY 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T P +F E+K SLE G+K +S I M P T + K++KL++ L+ DV++VY
Sbjct: 177 TEPEQFEEVKKSLEERGYKLATSEITMVPQTYAEVDEALQEKVEKLIDVLEDDDDVQEVY 236
Query: 236 TN 237
TN
Sbjct: 237 TN 238
>gi|452975328|gb|EME75147.1| hypothetical protein BSONL12_09177 [Bacillus sonorensis L12]
Length = 240
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 143/241 (59%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGKI ++ +E+ VA G +P++N LRL I+KA +AN
Sbjct: 1 MAGHSKWKNIQRRKNAQDAKRGKIFMKLAKEIYVAAREGGPDPESNASLRLVIDKAKNAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K N + NY E+ YEGY G A++V C+T+N+ RT +N+R F+
Sbjct: 61 MPNDNIDRAIKKAAGN--QDGSNYEEITYEGYGPAGVAVMVKCLTDNKNRTATNVRTAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK---GAEDFLIDKDNKITIIT 176
KNGG+L + G V +MF G ++ + + LE GA D L D I T
Sbjct: 119 KNGGSLGETGCVSYMFNRKGYIVIEREELETDEEEFMLEVIDLGA-DELETSDELFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P +F +K LE G++A ++ I M P T + K++KL++ L+ DV++VYT
Sbjct: 178 EPEQFEGVKKGLEERGYQAATAEITMIPQTYAEVDEAVQEKIEKLVDALEDDDDVQEVYT 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|410583596|ref|ZP_11320701.1| DNA-binding regulatory protein, YebC/PmpR family [Thermaerobacter
subterraneus DSM 13965]
gi|410504458|gb|EKP93968.1| DNA-binding regulatory protein, YebC/PmpR family [Thermaerobacter
subterraneus DSM 13965]
Length = 248
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 143/240 (59%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAK+GKI +++ RE+ A+ G +P+ N +LRLA+E+A +
Sbjct: 1 MAGHSKWANRKHRKARQDAKKGKIFSKLAREIITAVRQGGGDPEANPRLRLALERARQFS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + EN Y E+ YEGY G A++++ +T+NR R+ IR+IF
Sbjct: 61 MPAENIERAIKRGLGESEAEN--YEELVYEGYGPGGVALMLEILTDNRNRSAGEIRHIFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN--TKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL + G V +MF G + ++ LL LA+E GAED L +D I T
Sbjct: 119 KHGGNLGESGCVAWMFDRKGVITVSAQGAPAEDDLLLLAVEAGAED-LKAEDGSFVIYTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P ++ +LE G E +G+ M P T + + EA +L +LL+ L+ DV+++Y N
Sbjct: 178 PDDLHRVREALEKAGVPVEDAGLRMVPKTEVKVEGKEAEQLLRLLDALEDHDDVQEIYGN 237
>gi|387769648|ref|ZP_10125853.1| DNA-binding regulatory protein, YebC/PmpR family [Pasteurella
bettyae CCUG 2042]
gi|386906422|gb|EIJ71152.1| DNA-binding regulatory protein, YebC/PmpR family [Pasteurella
bettyae CCUG 2042]
Length = 247
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 139/244 (56%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G TN +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGTNPRLRTAVDKALASN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G +L ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFNKKGLILIDAGADEDALTEAAIEAGADDIQAQDDGSFEIYTAW 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ LE GFK + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 178 EDLGSVRDGLEAAGFKIAEAEVSMIPTTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 237
Query: 239 LIFD 242
I D
Sbjct: 238 EISD 241
>gi|419801161|ref|ZP_14326398.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
parainfluenzae HK262]
gi|419845461|ref|ZP_14368731.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
parainfluenzae HK2019]
gi|385193892|gb|EIF41238.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
parainfluenzae HK262]
gi|386415574|gb|EIJ30100.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
parainfluenzae HK2019]
Length = 246
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + +++ L++ A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILISQGEEDALMEAAIEAGADDVQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GFK +++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFKIDNAEVTMIPSTTVDLDLETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|110679300|ref|YP_682307.1| hypothetical protein RD1_2018 [Roseobacter denitrificans OCh 114]
gi|118574108|sp|Q168H2.1|Y2018_ROSDO RecName: Full=Probable transcriptional regulatory protein RD1_2018
gi|109455416|gb|ABG31621.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 246
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K+ + +E Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F
Sbjct: 61 MPKDNIDRAIKKSQAGDGDE---YEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G + + + +T+L A+E GAED +D + I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGTVTYPADVGDADTVLMAAIEAGAEDVESSEDGHV-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE ++E + +V RP T KL +L+ L+ DV++V N
Sbjct: 177 TDLNEVATALEAELGESEQTKLVWRPTTTTELDLEGMQKLMRLIEALEDDDDVQRVTAN 235
>gi|407691786|ref|YP_006816575.1| hypothetical protein ASU2_00970 [Actinobacillus suis H91-0380]
gi|407387843|gb|AFU18336.1| hypothetical protein ASU2_00970 [Actinobacillus suis H91-0380]
Length = 246
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVSANPRLRSAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + +++L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASGDEDSLTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++++ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGDVRDGIEKAGFKIENAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|326202951|ref|ZP_08192818.1| protein of unknown function DUF28 [Clostridium papyrosolvens DSM
2782]
gi|325987028|gb|EGD47857.1| protein of unknown function DUF28 [Clostridium papyrosolvens DSM
2782]
Length = 248
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 7/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKR+K DA R KI T++ RE+++A+ G +P+ N KL+ I K N
Sbjct: 1 MSGHSKWANIKRQKGAADAVRAKIFTKLGREIQIAVRIGGADPNANSKLKDIIAKCKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI R+I+K + + + NY E+ YEGY G A+I +C T+NR RT ++R+ F+
Sbjct: 61 MPNDNIQRSIKKASG--EADGSNYEEITYEGYGPGGVAVICECTTDNRNRTAGDLRHYFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL + G V FMF G ++ + K N L+ AL+ GAEDF D DN I+T
Sbjct: 119 KFGGNLGQSGCVSFMFNKKGVIVIEKDDKVNEEALMMEALDAGAEDFDSD-DNCYEIVTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVY 235
P+ F ++ +LE G++ + + M P T + E IK + KL++ L+ L DV VY
Sbjct: 178 PADFSAVREALEAKGYEFIEAEVSMIPTTTTKLTEPEQIKFMDKLIDALEDLDDVSNVY 236
>gi|299822805|ref|ZP_07054691.1| glucose-1-phosphate adenylyltransferase [Listeria grayi DSM 20601]
gi|299816334|gb|EFI83572.1| glucose-1-phosphate adenylyltransferase [Listeria grayi DSM 20601]
Length = 245
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 146/241 (60%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ +K DAKR K +I +EL VA G +PD N LRL ++KA AN+
Sbjct: 4 MSGHSKWNNIQGRKNAQDAKRAKTFQKIAKELYVAAKGGADPDMNPSLRLVMDKAKAANM 63
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K N NY EV YEGY G A++V +T+N+ RT +N+R FNK
Sbjct: 64 PNDNIKRAIDKATG--ANATENYEEVTYEGYGPAGVAVLVHALTDNKNRTSTNVRVGFNK 121
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFL---PNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + G+V ++F G L+ +++ + A+E GAED + + ++T
Sbjct: 122 NGGSLGETGTVNYLFDRKGYLVIERTDTEVEEDNFMLEAIEAGAEDVFVYPE-VFEVLTD 180
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
PS F +K+SL+ G+ + ++M+P T I + + +L+++++ L++ DV++VYTN
Sbjct: 181 PSDFTAVKDSLQDAGYVFAEANLIMKPQTTIEVPEDKKEQLEQMIDVLEEDDDVQEVYTN 240
Query: 238 A 238
A
Sbjct: 241 A 241
>gi|182418631|ref|ZP_02949908.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237668011|ref|ZP_04527995.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377493|gb|EDT75047.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237656359|gb|EEP53915.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 246
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGK+ T+I +EL +A+ N G N D N KLR + KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKADAKRGKVFTKIGKELMMAVKNGGPNLDINAKLRDVVAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R+I+K + + + +N+ + YEGY NG A+IV+ +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTITRSIKKASGELGS--VNFENIVYEGYGPNGVAVIVETLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ +G V FMF+ G+L+ + ++ ++ LAL+ GAEDF D++ + T+P
Sbjct: 119 KGGGNMGTQGCVGFMFQEKGELVIEKEDRDEDEMMMLALDAGAEDFNADEEEVFVVTTAP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE G + + + M P T + +A K QK+L+ L DV++VY NA
Sbjct: 179 EDFGTVREALEAEGIEFLEAAVKMIPDTYTAINEDDAKKFQKMLDLLDDDDDVQEVYHNA 238
>gi|375084727|ref|ZP_09731586.1| YebC/PmpR family DNA-binding regulatory protein [Megamonas
funiformis YIT 11815]
gi|374567862|gb|EHR39061.1| YebC/PmpR family DNA-binding regulatory protein [Megamonas
funiformis YIT 11815]
Length = 243
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 152/242 (62%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA R K+ T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKRKKGANDAIRAKMTTKIGREITIAVRMGGADPTGNMRLKLALSKAKSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK ++ NY E+ YEGY G+A++++ +T+NR RT ++IR++F+
Sbjct: 61 IPKDNINRAIQKGLG--ASDGSNYEELIYEGYGPAGSAVMLEVMTDNRNRTAADIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK----KNTLLDLALEKGAEDFLIDKDNKITII 175
K GGNL + G V +MF + +F+ + + + +L+ +AL+ GAEDF +D+ I
Sbjct: 119 KYGGNLGETGCVGWMFHK--KAIFVVDKEAFDDEESLMMIALDAGAEDFKA-EDDSFEIT 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
+P F I +LE + S I M P T + + +A K+Q L++ L++ DV+ VY
Sbjct: 176 AAPEDFDAISQALEENNIETVESEITMIPDTTVKVEGKDAEKMQTLIDMLEEHDDVQNVY 235
Query: 236 TN 237
+N
Sbjct: 236 SN 237
>gi|325579046|ref|ZP_08149002.1| YebC like protein [Haemophilus parainfluenzae ATCC 33392]
gi|345429664|ref|YP_004822782.1| hypothetical protein PARA_10870 [Haemophilus parainfluenzae T3T1]
gi|301155725|emb|CBW15193.1| conserved protein [Haemophilus parainfluenzae T3T1]
gi|325159281|gb|EGC71415.1| YebC like protein [Haemophilus parainfluenzae ATCC 33392]
Length = 246
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGANPRLRAAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + +++ L++ A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILISEGEEDALMEAAIEAGADDVQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GFK +++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFKIDNAEVTMIPSTTVDLDLETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|395225307|ref|ZP_10403834.1| DNA-binding regulatory protein, YebC/PmpR family [Thiovulum sp. ES]
gi|394446554|gb|EJF07375.1| DNA-binding regulatory protein, YebC/PmpR family [Thiovulum sp. ES]
Length = 238
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 148/238 (62%), Gaps = 3/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDAKRG + T++++++ A G +PD N LRLA++KA D +
Sbjct: 1 MAGHSKWANIKRRKGAVDAKRGVLFTKLVKDIVTAAKQGGGDPDMNPSLRLAVQKAKDNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI K N+K + Y ++ YEGY +G AI+++ +T+NR RTV NIR +
Sbjct: 61 MPHDNIQRAIDKATGNLKG--VVYEDIIYEGYGPHGVAILMEVMTDNRNRTVGNIRATLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL + GSV +MF+ G L+ + + ++++A+E GAE+ L + D+ I + PS
Sbjct: 119 KNGGNLGESGSVGWMFEKRGILVVEKSKFDDEVVEIAMESGAEEILDEMDDVIVVEIEPS 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
E+ +++E K S I M I D + L+ L+ +L+ D++ +YTN
Sbjct: 179 LLNELLSNIEKIDVKILESKIEMVASNEIDLDDEKQESLEFLIEKLEDDDDIQNIYTN 236
>gi|218961235|ref|YP_001741010.1| hypothetical protein CLOAM0931 [Candidatus Cloacamonas
acidaminovorans]
gi|167729892|emb|CAO80804.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 250
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KW++IK KK DAKRGK+ TR+++E+ +A G +PD N +LR AI A + N
Sbjct: 1 MSGHNKWSSIKHKKGAADAKRGKVFTRLVKEIILAAKTGGGDPDMNPRLRTAINTAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ I E Y EV YEGY NG I+V+ +T+N+ R+VS +R+ F+
Sbjct: 61 MPKENIERAIKRGTGEI--EGAAYEEVIYEGYGHNGVGIVVEVMTDNKKRSVSELRHTFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL++ GSV + F+ G +P+ ++ + ALE GA+D +++DN + TS
Sbjct: 119 KYGGNLAETGSVAWNFEQKG-FFNVPSAGLDEDEFMLKALEAGADDVELNEDN-FDVYTS 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ F + +LE G+ ++ + P I D A KL +L+ L++L DV+KVY N
Sbjct: 177 PTDFHIVIGNLEKEGYPIHNAELTRVPKNTIAVDDDTAEKLMRLIESLEELDDVQKVYAN 236
Query: 238 ALIFD 242
+ D
Sbjct: 237 FEVSD 241
>gi|338730388|ref|YP_004659780.1| hypothetical protein Theth_0596 [Thermotoga thermarum DSM 5069]
gi|335364739|gb|AEH50684.1| protein of unknown function DUF28 [Thermotoga thermarum DSM 5069]
Length = 253
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 157/241 (65%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAKR ++ T+++RE+ VA G NP+TN +LR AIEKA +A+
Sbjct: 1 MSGHNKWANIKHRKMAQDAKRSQLFTKLIREIIVAARLGGGNPETNPRLRAAIEKAREAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI +AI++ + E +Y E+ YE Y+ G A+ + +T+N+ RT +R++ +
Sbjct: 61 MPKENIEKAIKRGTGEL--EGADYQEIIYEAYAPGGVALYIRTLTDNKNRTAQELRHVLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK---KNTLLDLALEKGAEDFLIDKDNKITIIT 176
++GG+L+ G+V ++F+ G ++ +P ++ L+ LA++ GAED + D D+ I IIT
Sbjct: 119 RHGGSLADLGAVSWIFERKG-VITVPRSQVANVEELMMLAIDAGAED-IDDSDDPIRIIT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P +++K L+ G+K+E+S I P + +A ++ LLN L+ + DV++VY+
Sbjct: 177 APDDLMKVKEVLDQNGYKSEAS-ISYIPKNTVKVSGKDAERVLALLNALEDMDDVQEVYS 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|312794064|ref|YP_004026987.1| hypothetical protein Calkr_1895 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|344996552|ref|YP_004798895.1| hypothetical protein Calla_1298 [Caldicellulosiruptor lactoaceticus
6A]
gi|312181204|gb|ADQ41374.1| protein of unknown function DUF28 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|343964771|gb|AEM73918.1| UPF0082 protein yeeN [Caldicellulosiruptor lactoaceticus 6A]
Length = 243
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DA++GK+ T++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MAGHSKWANIKHKKEKTDAQKGKLFTKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I++ I + Y ++ YEGY G A+IV+ +TNNR RT +R+IF+
Sbjct: 61 MPMDKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKI-TIIT 176
KNGGNL + G V +MF G ++ + ++ +++ ALE GAEDF +N I IIT
Sbjct: 119 KNGGNLGQTGCVSWMFSRKGVIVIEKESFPDEDFVMEKALEYGAEDFT--SENGIYEIIT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP F +++ LE GF + I M P T + +A K+++L++ L+ DVK+VY
Sbjct: 177 SPEDFSKVREGLEKEGFTFIRAQIEMIPQTTVKLSSEDAQKMRRLIDMLEDNDDVKEVYH 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|240949853|ref|ZP_04754179.1| hypothetical protein AM305_01861 [Actinobacillus minor NM305]
gi|240295707|gb|EER46409.1| hypothetical protein AM305_01861 [Actinobacillus minor NM305]
Length = 246
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASADEDALTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGAVRDGIEAAGFKIENAEVTMIPSTTVQLDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|254524813|ref|ZP_05136868.1| conserved hypothetical protein TIGR01033 [Stenotrophomonas sp.
SKA14]
gi|219722404|gb|EED40929.1| conserved hypothetical protein TIGR01033 [Stenotrophomonas sp.
SKA14]
Length = 243
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 153/236 (64%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L N+ K+
Sbjct: 2 GRGPSIEARKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAMDKGLAVNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E ++Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVDYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G + F P ++ + + A+E GA+D ++ D I ++TSP F
Sbjct: 120 NMGTEGSVAFMFKRLGVISFAPGADEDAITEAAIEAGADDIVVYPDDGSIDVVTSPDAFN 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+++ G A + I R +I + A++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKDAMAAAGHVAGHAEITFRADNDIKVEGEVALQVKKLLDMLEDLDDVQDVYSNA 235
>gi|322515239|ref|ZP_08068237.1| YebC like protein [Actinobacillus ureae ATCC 25976]
gi|322118744|gb|EFX90950.1| YebC like protein [Actinobacillus ureae ATCC 25976]
Length = 246
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVSANPRLRSAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASGDEDALTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++++ +E GFK E++ + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGDVRDGIEKAGFKIENAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|255971123|ref|ZP_05421709.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962141|gb|EET94617.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 242
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 146/242 (60%), Gaps = 7/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+NI+ +K DAKRGKI ++ RE+ +A G +P N LRLA++KA AN
Sbjct: 1 MSGHSKWSNIQGRKNAQDAKRGKIFQKVSREIYMAAKAGGPDPAMNPALRLAVDKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K +S E +Y EV YEGY G A++V +T+NR RT +N+R F
Sbjct: 61 MPNDNIARAIKKASS--AGEGEHYDEVTYEGYGPGGVAVLVHALTDNRNRTATNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV +MF G ++ +++ +L++ LE G ED + I T
Sbjct: 119 RNGGSLGETGSVNYMFDRKGYIVIKREDHAIEEDDMLEVVLEAGGEDLETSPE-VFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++++LE + + + M P T + D + +L++L+++L+ DV +V+T
Sbjct: 178 APEDFTAVRDALEQADYSLAQAELTMVPQTLLTLNDEQKAQLERLVDKLEDDDDVSEVFT 237
Query: 237 NA 238
+A
Sbjct: 238 SA 239
>gi|383309869|ref|YP_005362679.1| YebC like protein [Pasteurella multocida subsp. multocida str.
HN06]
gi|380871141|gb|AFF23508.1| YebC like protein [Pasteurella multocida subsp. multocida str.
HN06]
Length = 246
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 147/244 (60%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + + N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVNANPRLRTAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ ++D A+E GA+D +D + T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILITSGDEDVIMDAAIEAGADDVQAQEDGSFEVYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++++E G K +++ + M P T + A KL KL++ L+ DV+ VY N
Sbjct: 177 EELGAVRDAIESAGIKIDNAEVTMIPSTTVELDAETAPKLLKLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|300856550|ref|YP_003781534.1| hypothetical protein CLJU_c33870 [Clostridium ljungdahlii DSM
13528]
gi|300436665|gb|ADK16432.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 246
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 149/241 (61%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T+I +EL +A G+NPD+N KLR I KA N
Sbjct: 1 MSGHSKWHNIQAKKGKADAKRGKIFTKIGKELAIAAKEGGSNPDSNSKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++ + RAI+K + + +NY E+ YEGY +G A+IV +T+N+ R+ SN+R F+
Sbjct: 61 MPQDTVQRAIKKGSGELTG--VNYEEISYEGYGPSGVAMIVKALTDNKNRSASNVRAAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL--PNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
++GGNL G V +MF+ GQ++ + ++ ++ L+ GAEDF+ +++ +IT+
Sbjct: 119 RHGGNLGANGCVGWMFQAKGQIVIERKEDMDEDEIMMQVLDAGAEDFIAEEE-VFEVITT 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++ LE GF+ S+ I M P + A K+Q+L+++L+ DV+ VY N
Sbjct: 178 VEDFGTVREKLEEQGFEFLSADITMIPDNTVAVDMETAGKVQRLIDKLEDDDDVQDVYHN 237
Query: 238 A 238
A
Sbjct: 238 A 238
>gi|296110560|ref|YP_003620941.1| hypothetical protein LKI_02145 [Leuconostoc kimchii IMSNU 11154]
gi|339490347|ref|YP_004704852.1| hypothetical protein LGMK_00835 [Leuconostoc sp. C2]
gi|295832091|gb|ADG39972.1| hypothetical protein LKI_02145 [Leuconostoc kimchii IMSNU 11154]
gi|338852019|gb|AEJ30229.1| hypothetical protein LGMK_00835 [Leuconostoc sp. C2]
Length = 240
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 137/243 (56%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ +L VA G PD N LRL IEKA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGAEPDLNASLRLVIEKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + + EV YEGY G AI+V+ T+N RTVS+IRN F
Sbjct: 61 MPKDNIQRALDKASGAGGKK---FEEVTYEGYGTAGVAILVETSTDNINRTVSSIRNSFK 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
GG L GSV F F G L P+ ++T+L+ ALE GA+D +D+ I
Sbjct: 118 HFGGALGTSGSVAFQFDRKGYLAIDREAFPDLDEDTILEAALEAGADDVQT-QDDVFEIF 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T PS F +++ +L G+ S + M + D + KL KL++EL++ DV VY
Sbjct: 177 TQPSDFQQVEGALTEAGYAFADSEVTMISQNPMTISDDDREKLDKLVDELEENEDVLAVY 236
Query: 236 TNA 238
T A
Sbjct: 237 TTA 239
>gi|146295998|ref|YP_001179769.1| hypothetical protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166227541|sp|A4XI43.1|Y964_CALS8 RecName: Full=Probable transcriptional regulatory protein Csac_0964
gi|145409574|gb|ABP66578.1| protein of unknown function DUF28 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 242
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ KK DA++GKI +++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MSGHSKWANIRHKKEKTDAQKGKIFSKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I++ I + Y ++ YEGY G A+IV+ +TNNR RT IR+IF+
Sbjct: 61 MPMDKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGEIRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
KNGGNL + G V +MF G ++ P+ ++ +++ ALE GAEDF ++D II
Sbjct: 119 KNGGNLGQTGCVSWMFNRKGVIVIEKENFPD--EDFVMEKALEYGAEDFASEED-VYEII 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T+P F +++ LE GF + I M P T + + +A K+++L++ L+ DVK+VY
Sbjct: 176 TTPEDFSKVREGLEKEGFTFIRAQIEMIPQTTVRLSEEDAQKMRRLIDMLEDNDDVKEVY 235
Query: 236 TN 237
N
Sbjct: 236 HN 237
>gi|21730736|pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 144/240 (60%), Gaps = 8/240 (3%)
Query: 2 AGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANI 60
AGHS WA IK KK VDA+RGK+ ++++RE+ VA G NP+ N +LR AIE+A AN
Sbjct: 2 AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANX 61
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P NI RAI+K ++ E + EV YEGY+ G A+ V T+NR RT S +R++F K
Sbjct: 62 PWENIERAIKKGAGELEGEQ--FEEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTK 119
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP--NTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+GGNL G V ++F+ G + +P + LL+ A+E GAED ++ I I T P
Sbjct: 120 HGGNLGASGCVSYLFERKG-YIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHI-IYTVP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+ E+K +LE G E + I +P + + D E A K+ KLLN L++L DV++V N
Sbjct: 178 EELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIAN 237
>gi|33151784|ref|NP_873137.1| hypothetical protein HD0596 [Haemophilus ducreyi 35000HP]
gi|49036530|sp|Q7VNF3.1|Y596_HAEDU RecName: Full=Probable transcriptional regulatory protein HD_0596
gi|33148005|gb|AAP95526.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 246
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVAANPRLRSAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + N ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIANADEDALTEAAIEAGADDIQAQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GF + + + M P T + A KL KL++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFNIQEAEVTMIPSTTVDLDAETAPKLLKLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|170718044|ref|YP_001785083.1| hypothetical protein HSM_1763 [Haemophilus somnus 2336]
gi|226695950|sp|B0UVY2.1|Y1763_HAES2 RecName: Full=Probable transcriptional regulatory protein HSM_1763
gi|168826173|gb|ACA31544.1| protein of unknown function DUF28 [Haemophilus somnus 2336]
Length = 246
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVGANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDGTNM---ETRIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D + +D + I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVESADEDALTEAAIEAGADDIQVQEDGSVEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+ +E+ GFK ++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGLVKDGIEVAGFKVVNAEVTMIPSTMVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|217967996|ref|YP_002353502.1| hypothetical protein Dtur_1615 [Dictyoglomus turgidum DSM 6724]
gi|226734745|sp|B8E2P4.1|Y1615_DICTD RecName: Full=Probable transcriptional regulatory protein Dtur_1615
gi|217337095|gb|ACK42888.1| protein of unknown function DUF28 [Dictyoglomus turgidum DSM 6724]
Length = 249
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 154/246 (62%), Gaps = 8/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK +K DAK+GK+ +++ +E+ +A G NP+TN +LR AIE+A +AN
Sbjct: 1 MSGHSKWANIKHRKAAADAKKGKLFSQLSKEIIIAAKHGGGNPETNPRLRAAIERAREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI +AI + I + Y EV YEGY G AI+V+ +T+N+ RT + IR IF
Sbjct: 61 MPKENIEKAIMRGTGEIPG--VAYEEVTYEGYGPGGVAIMVEVVTDNKNRTAAEIRRIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK--NTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL + G V ++F+ G ++ + K + L+ ALE GAED I D+ + +ITS
Sbjct: 119 KHGGNLGEAGCVAWIFEEKGSIIIEKESVKDEDQLISDALEAGAEDVQI-SDDTVEVITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDG-EAIKLQKLLNELKKLHDVKKVYT 236
P F E+++ L+ G+K + + P N+V DG +A K+ KL+ EL+ DV+K Y
Sbjct: 178 PESFSEVRDILKEKGYKITQAEVTKVP-KNLVPVDGPDAEKVLKLMEELEDHDDVQKTYA 236
Query: 237 NALIFD 242
N I D
Sbjct: 237 NFDIPD 242
>gi|400754937|ref|YP_006563305.1| hypothetical protein PGA2_c20690 [Phaeobacter gallaeciensis 2.10]
gi|398654090|gb|AFO88060.1| hypothetical protein PGA2_c20690 [Phaeobacter gallaeciensis 2.10]
Length = 271
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 26 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSQS 85
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + E +Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F+
Sbjct: 86 VPKDVIDRAIKKSTAG---EGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFS 142
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + +T++ A+E GAED +D I I +
Sbjct: 143 KNGGNLGETGSVGFMFDRKGEVTYPAAVGDADTVMMAAIEAGAEDVDSSEDGHI-IYCAD 201
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE +++S+ +V +P T KL KL++ L+ DV++V TN
Sbjct: 202 TDLNEVSNALEGELGESDSTKLVWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 260
>gi|302871408|ref|YP_003840044.1| hypothetical protein COB47_0745 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574267|gb|ADL42058.1| protein of unknown function DUF28 [Caldicellulosiruptor obsidiansis
OB47]
Length = 243
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ KK DA++G++ T++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MSGHSKWANIRHKKEKTDAQKGRLFTKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I++ I + Y ++ YEGY G A+IV+ +TNNR RT +R+IF+
Sbjct: 61 MPMDKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + G V +MF G ++ + ++ +++ ALE GAEDF +D+ IITS
Sbjct: 119 KNGGNLGQTGCVSWMFSRKGVIVIEKESFPDEDFVMEKALEYGAEDFS-SEDDIYEIITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +++ LE GF + I M P T + +A K+++L++ L+ DVK+VY N
Sbjct: 178 PEDFSKVREGLEKEGFTFIRAQIEMIPQTTVKLSSEDAQKMRRLIDMLEDNDDVKEVYHN 237
>gi|75907451|ref|YP_321747.1| hypothetical protein Ava_1228 [Anabaena variabilis ATCC 29413]
gi|119391247|sp|Q3MDT4.1|Y1228_ANAVT RecName: Full=Probable transcriptional regulatory protein Ava_1228
gi|75701176|gb|ABA20852.1| Protein of unknown function DUF28 [Anabaena variabilis ATCC 29413]
Length = 252
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 2/239 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K +VDAK+GK T++ R + +A G +P N +LR AI+KA A
Sbjct: 1 MAGHSKWANIKRQKAVVDAKKGKTFTQLSRAIILAARSGIPDPSGNFQLRTAIDKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K +N + E+RYEGY G AI+++ +T+NR RT +++R F+
Sbjct: 61 IPNDNIERAIAKGAGTFGGDNASLEEIRYEGYGPGGVAILIEALTDNRNRTAADLRVAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL + G V +MF G + ++ LL+ +LE GAE + + +D + T +
Sbjct: 121 KNGGNLGETGCVSWMFDQKGVCVVSGVVDEDQLLEASLEGGAESYEMTEDETAEVFTEVA 180
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNI-VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ +L+ GFK + + P N+ V + +A L KL++ L+ L DV+ V +N
Sbjct: 181 NLEILNQTLKDQGFKVTDAELRWIPSNNVEVTEPDQARSLLKLIDTLEGLDDVQNVTSN 239
>gi|427707683|ref|YP_007050060.1| hypothetical protein Nos7107_2299 [Nostoc sp. PCC 7107]
gi|427360188|gb|AFY42910.1| UPF0082 protein yeeN [Nostoc sp. PCC 7107]
Length = 252
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 142/239 (59%), Gaps = 2/239 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K +VDAKRGK T++ R + +A G +P N +LR AIEKA A
Sbjct: 1 MAGHSKWANIKRQKAVVDAKRGKTFTQLSRAIILAARNGVPDPTGNFQLRTAIEKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K +N + E+RYEGY G AI+++ +T+NR RT +++R F+
Sbjct: 61 IPNDNIERAIAKGAGTFSGDNHSLEEIRYEGYGPCGVAILIEALTDNRNRTAADLRVAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL + G V +MF G + ++ LL+ +LE GAE + + +D ++T +
Sbjct: 121 KNGGNLGEIGCVSWMFDQKGVCIVQGVVDEDQLLEASLEGGAESYEMTEDETAEVLTEVA 180
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNI-VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ +L+ GFK + + P N+ V +A L KL++ L+ L DV+ V +N
Sbjct: 181 NLEILNQTLKDKGFKVTDAELRWIPSNNVEVIDSDQARSLLKLIDTLEGLDDVQNVTSN 239
>gi|221633116|ref|YP_002522341.1| hypothetical protein trd_1132 [Thermomicrobium roseum DSM 5159]
gi|254799948|sp|B9L0R1.1|Y1132_THERP RecName: Full=Probable transcriptional regulatory protein trd_1132
gi|221156042|gb|ACM05169.1| conserved hypothetical protein TIGR01033 [Thermomicrobium roseum
DSM 5159]
Length = 248
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWA IKR+K D ++G+I +++ RE+ VA+ G NP+TN++LR+AIE+A
Sbjct: 1 MAGHSKWAQIKRQKQAADFRKGQIFSKLAREIHVAVREGGPNPETNVRLRMAIERARREG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I S Y + YEGY G AI+ +T+NR RT S +R+IF+
Sbjct: 61 MPKDTI-ENAIAKASGAAGGAAEYETIVYEGYGPGGVAIMAIALTDNRNRTASVVRHIFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL-ALEKGAEDFLIDKDNKITIITSP 178
K GG+L + GSV + F+ GQ++ + + L A++ GA DF ++ D+ + I T P
Sbjct: 120 KYGGSLGETGSVAWQFETVGQIVVATDGHDPEEIALAAIDAGARDFEVE-DDSVIITTDP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ ++ LE G++ + I P T + + G+A KLL L+ L DV++VYTNA
Sbjct: 179 DQLSDVAEKLEAAGYQIRQADIQRIPTTTVELEGGQAQSALKLLEALEDLDDVQEVYTNA 238
>gi|381180009|ref|ZP_09888854.1| protein of unknown function DUF28 [Treponema saccharophilum DSM
2985]
gi|380768105|gb|EIC02099.1| protein of unknown function DUF28 [Treponema saccharophilum DSM
2985]
Length = 245
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 154/242 (63%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK K DAKRG + T++++E+ +A + G + + N +LR AI KA A+
Sbjct: 1 MSGHNKWSTIKHAKGAADAKRGALFTKLIKEISIAASMGGGDQNANPRLRAAIVKARAAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + E+ YEGY+ G A++V+ +T+N R +N+RNIFN
Sbjct: 61 MPKDNIERAIKKGTGELAGGT--FEELVYEGYAAGGVAVLVEVLTDNHNRAAANVRNIFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL GSV MF G + + ++ +++ ALE GAED ++++D IT+ T+P
Sbjct: 119 KHGGNLGTSGSVSRMFDRKGVIEYDAEKVSEDEVMEAALEAGAED-IVNEDGVITVTTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRP--YTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+ F + +LE G+++ S+ + M P YT++ + A K+QKL+++L++ DV+ V+
Sbjct: 178 NDFTTVVEALEPKGWESLSAEVSMVPQAYTDVDLE--TAAKVQKLIDKLEEDDDVQNVWH 235
Query: 237 NA 238
A
Sbjct: 236 TA 237
>gi|392949240|ref|ZP_10314827.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
pentosus KCA1]
gi|392435552|gb|EIW13489.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
pentosus KCA1]
Length = 242
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGK+ +I REL +A+ G +PD+N +LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + NY EV YEGY G A++V +T+N+ RT + +R+ F
Sbjct: 61 MPKDNIKRAVDKGSGSGAE---NYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+GG+L+ G+V +MF G ++ +T ++T+L L+ G +D L D I T
Sbjct: 118 HHGGSLAATGAVSYMFDRKGYIVISREDLDTDEDTMLMDVLDAGGDD-LQSSDEAFEIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P + ++++LE +G+K E++ + M P +A KLQ +++EL+ DV +VY
Sbjct: 177 DPKQLAAVRDALEASGYKLETAELTMIPENLTDVPADKAEKLQHMIDELEDNDDVSEVYE 236
Query: 237 NA 238
A
Sbjct: 237 AA 238
>gi|302389941|ref|YP_003825762.1| hypothetical protein Toce_1384 [Thermosediminibacter oceani DSM
16646]
gi|302200569|gb|ADL08139.1| protein of unknown function DUF28 [Thermosediminibacter oceani DSM
16646]
Length = 242
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 152/241 (63%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK +DA++GK+ T++ + + VA+ G +P+ N KLR IEKA +AN
Sbjct: 1 MSGHSKWANIKHKKAKMDAQKGKLYTKLSKMIIVAVREGGPDPNANSKLRDIIEKAREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + + N+ EV YEGY GAA++++ +T+NR RT +R+IF+
Sbjct: 61 MPNENIMRAIKRGSGELGGANME--EVLYEGYGPGGAAVLLEVMTDNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK---NTLLDLALEKGAEDFLIDKDNKITIIT 176
K GGNL + G V +MF+ G L+ + + + ++ LA+E GA+D + ++D+ I I T
Sbjct: 119 KYGGNLGEAGCVAWMFEKKG-LIIIEKSDGIDVDGVMMLAIEAGADD-VEEQDDSIEITT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
S +F +++ L+ G K S+ I P T + + ++ ++KLL L+ DV+ VYT
Sbjct: 177 STERFEDVRKFLQEKGVKLSSAEITYLPKTTLSLSEKDSEMMEKLLEALEDHDDVQNVYT 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|83952635|ref|ZP_00961365.1| hypothetical protein ISM_10795 [Roseovarius nubinhibens ISM]
gi|83835770|gb|EAP75069.1| hypothetical protein ISM_10795 [Roseovarius nubinhibens ISM]
Length = 246
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 148/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A ++
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPEKNPRLRLAVKEAKSSS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K I E +Y E+RYEGY NG A+IV+ +T+NR RT SN+R+ F+
Sbjct: 61 VPKDVIERAIKKA---IGGEAEDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++ + +T++ A+E GAED +D I I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGEISYAAEIGDADTVMMAAIEAGAEDVESSEDGHI-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE +++S+ +V +P T KL KL+ L+ DV++V N
Sbjct: 177 TDLNEVAGALEGELGESDSTKLVWKPTTTTEMDLDGMQKLMKLIEALEDDDDVQRVTAN 235
>gi|113460653|ref|YP_718719.1| hypothetical protein HS_0508 [Haemophilus somnus 129PT]
gi|123327177|sp|Q0I244.1|Y508_HAES1 RecName: Full=Probable transcriptional regulatory protein HS_0508
gi|112822696|gb|ABI24785.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 246
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVGANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDGTNM---ETRIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D + +D + I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVESADEDALTEAAIEAGADDIQVQEDGSVEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K+ +E+ GFK ++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGLVKDGIEVVGFKVVNAEVTMIPSTMVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|379007122|ref|YP_005256573.1| hypothetical protein [Sulfobacillus acidophilus DSM 10332]
gi|361053384|gb|AEW04901.1| UPF0082 protein yeeN [Sulfobacillus acidophilus DSM 10332]
Length = 247
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK VDA++G + +R+ +E+ A G NPDTN KLR+AIEKA N
Sbjct: 1 MSGHSKWANIKRKKAKVDAQKGTLFSRLTKEIMAAAKRGGGNPDTNFKLRIAIEKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ + ++Y E YEGY G AI +D +T+NR RT IR+IF+
Sbjct: 61 LPAANIERAIRRATG--QEAGVHYEEAVYEGYGPGGTAIYMDILTDNRNRTAGEIRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP-NTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
++GG+L + G V +MF+ G+L+ + + LLD+A+E GA+D L +D++ ++T+P
Sbjct: 119 RHGGSLGETGCVAWMFEPKGRLVITQTDLTEEELLDIAIEAGADD-LAREDDEYVVLTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++ + E G + + +V P T + + EA +L +LL L+ DV++VY+NA
Sbjct: 178 DVLDLVRQAFEDRGIPVDEAELVRLPKTTVAVEGREAEQLMELLELLEDHDDVQRVYSNA 237
Query: 239 LIFD 242
D
Sbjct: 238 DFPD 241
>gi|119384640|ref|YP_915696.1| hypothetical protein Pden_1905 [Paracoccus denitrificans PD1222]
gi|166227488|sp|A1B3A6.1|Y1905_PARDP RecName: Full=Probable transcriptional regulatory protein Pden_1905
gi|119374407|gb|ABL70000.1| protein of unknown function DUF28 [Paracoccus denitrificans PD1222]
Length = 246
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 148/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGKQDKLRSKLFSKLAKEITVAAKMGDPDPEKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + NY E+RYEGY NG AIIV+ +T+NR RT SN+R+ F
Sbjct: 61 MPKDVIDRAIKKSQGG---DAENYDEIRYEGYGPNGIAIIVEAMTDNRNRTASNVRSYFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L + GSV FMF G++L+ P+ +T++ A+E GAED D+D I T+
Sbjct: 118 KYGGDLGQTGSVSFMFDRKGEILYKPDAGDADTVMMAAIEAGAEDVESDEDGHW-IYTAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE + ++E + ++ +P A KL KL++ L++ DV+ V N
Sbjct: 177 TDLAEVSTALEASLGESEHAKLIWKPQAPTEIDLETATKLMKLIDALEEDDDVQNVTGN 235
>gi|15643232|ref|NP_228276.1| hypothetical protein TM0466 [Thermotoga maritima MSB8]
gi|4980974|gb|AAD35550.1|AE001724_8 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 254
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 153/240 (63%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ KI T+++RE+ VA G N +TN +LR A+E+A N
Sbjct: 2 MSGHNKWANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAEN 61
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ + E ++Y EV YEGY+ G A+ + +T+N+ RT +R++FN
Sbjct: 62 MPKENIERAIKRGTGEL--EGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFN 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GG+L++ GSV ++F+ G + + K+ L+ +A++ GAED + D ++ I IIT+
Sbjct: 120 KYGGSLAESGSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAED-IKDAEDPIQIITA 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P E+K+ LE G++ E+ + P + +A K+ + LN L+ + DV++VY+N
Sbjct: 179 PENLSEVKSKLEEAGYEVEAK-VTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEVYSN 237
>gi|403252203|ref|ZP_10918513.1| hypothetical protein EMP_00422 [Thermotoga sp. EMP]
gi|418045360|ref|ZP_12683456.1| protein of unknown function DUF28 [Thermotoga maritima MSB8]
gi|33517115|sp|Q9WYT7.2|Y466_THEMA RecName: Full=Probable transcriptional regulatory protein TM_0466
gi|351678442|gb|EHA61589.1| protein of unknown function DUF28 [Thermotoga maritima MSB8]
gi|402812216|gb|EJX26695.1| hypothetical protein EMP_00422 [Thermotoga sp. EMP]
Length = 253
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 153/240 (63%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ KI T+++RE+ VA G N +TN +LR A+E+A N
Sbjct: 1 MSGHNKWANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ + E ++Y EV YEGY+ G A+ + +T+N+ RT +R++FN
Sbjct: 61 MPKENIERAIKRGTGEL--EGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GG+L++ GSV ++F+ G + + K+ L+ +A++ GAED + D ++ I IIT+
Sbjct: 119 KYGGSLAESGSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAED-IKDAEDPIQIITA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P E+K+ LE G++ E+ + P + +A K+ + LN L+ + DV++VY+N
Sbjct: 178 PENLSEVKSKLEEAGYEVEAK-VTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEVYSN 236
>gi|157363874|ref|YP_001470641.1| hypothetical protein Tlet_1011 [Thermotoga lettingae TMO]
gi|166919120|sp|A8F5Z3.1|Y1011_THELT RecName: Full=Probable transcriptional regulatory protein Tlet_1011
gi|157314478|gb|ABV33577.1| protein of unknown function DUF28 [Thermotoga lettingae TMO]
Length = 253
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 153/241 (63%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ ++ T+++REL VA G +P+TN +LR AIEKA +AN
Sbjct: 1 MSGHNKWANIKHRKMAQDAKKSQLFTKLIRELIVAAREGGGDPETNSRLRTAIEKAKEAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P+ NI +AI++ + E + Y E+ YE Y G A+ + +T+N+ RT +R++ +
Sbjct: 61 MPRENIEKAIKRGTGEL--EGVEYQEIIYEAYGPGGVALYIRALTDNKNRTAQELRHVLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK---KNTLLDLALEKGAEDFLIDKDNKITIIT 176
++GG+L+ G+V ++F+ G ++ +P + L+ +A++ GAED + D+D+ + I T
Sbjct: 119 RHGGSLADLGAVGWIFERKG-IISVPRDQVANVEELVMMAIDAGAED-IDDQDDPVRITT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP + +K LE G+KAE +GI P + +A K+ LLN L+ + DV+ VY+
Sbjct: 177 SPDNLMSVKEELEKNGYKAE-AGISYVPKNTVQVTGKDAEKILALLNALEDMDDVQDVYS 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|429735141|ref|ZP_19269118.1| DNA-binding regulatory protein, YebC/PmpR family [Aggregatibacter
actinomycetemcomitans Y4]
gi|429150081|gb|EKX93031.1| DNA-binding regulatory protein, YebC/PmpR family [Aggregatibacter
actinomycetemcomitans Y4]
Length = 246
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY GAA++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGAAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ +E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAEIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|307944534|ref|ZP_07659874.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
gi|307772283|gb|EFO31504.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
Length = 248
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 153/240 (63%), Gaps = 8/240 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSK+ NI +K DA R K+ +++ +E+ VA G+ +PD+N +LRLA++ A +
Sbjct: 1 MAGHSKFKNIMHRKGRQDAVRSKMFSKLSKEITVAAKMGDPDPDSNPRLRLAVQNAKAQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K+ S + NY E+RYEGY G AI+V+ +T+NR R+ SNIR+ F
Sbjct: 61 MPKDNIQRAINKSQSG---DAENYEEIRYEGYGPAGVAIVVEALTDNRNRSASNIRSYFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L + GSV FMF G++ + P + + +L+ A+E GAED L D D+ T+ T+
Sbjct: 118 KCGGSLGETGSVSFMFDRVGEITYKPEAGEADAVLEAAIEAGAEDVLSD-DSGHTVYTAF 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
E+ +LE +A+S+ I+ +P N+ DG+ A L KL++ L++ DV+ V++N
Sbjct: 177 EDLNEVGKALEEALGEADSTKIIWKP-QNLTPVDGDKAQTLMKLIDMLEEDDDVQNVFSN 235
>gi|170288270|ref|YP_001738508.1| hypothetical protein TRQ2_0469 [Thermotoga sp. RQ2]
gi|226706222|sp|B1L927.1|Y469_THESQ RecName: Full=Probable transcriptional regulatory protein TRQ2_0469
gi|170175773|gb|ACB08825.1| protein of unknown function DUF28 [Thermotoga sp. RQ2]
Length = 253
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 153/240 (63%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ KI T+++RE+ VA G N +TN +LR A+E+A N
Sbjct: 1 MSGHNKWANIKHRKMAQDAKKSKIFTKLIREIIVAAREGGGNIETNPRLRAAVERARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI++ + E ++Y EV YEGY+ G A+ + +T+N+ RT +R++FN
Sbjct: 61 MPKENIERAIKRGTGEL--EGVDYQEVIYEGYAPGGVAVYIRALTDNKNRTAQELRHLFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKN--TLLDLALEKGAEDFLIDKDNKITIITS 177
K GG+L++ GSV ++F+ G + + K+ L+ +A++ GAED + D ++ I IIT+
Sbjct: 119 KYGGSLAESGSVSWIFERKGVIEISRDKVKDLEELMMIAIDAGAED-IKDTEDPIQIITA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P E+K+ LE G++ E+ + P + +A K+ + LN L+ + DV++VY+N
Sbjct: 178 PENLSEVKSKLEEAGYEVEAK-VTFIPKNTVKVTGKDAEKVLEFLNALEDMDDVQEVYSN 236
>gi|339499958|ref|YP_004697993.1| hypothetical protein Spica_1339 [Spirochaeta caldaria DSM 7334]
gi|338834307|gb|AEJ19485.1| UPF0082 protein yeeN [Spirochaeta caldaria DSM 7334]
Length = 246
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK DAKRG++ T++++E+ +A G +PD N +LR AI KA AN
Sbjct: 1 MSGHSKWATIKHKKGAADAKRGQMFTKLIKEISIAARMGGGDPDANPRLRTAILKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K + E +NY E+ YE Y+ G A++++ +T+N+ R +++RNI N
Sbjct: 61 MPKDNVERAIKKGTGEL--EGVNYEELTYEAYAPGGVAVLIEVLTDNKNRAAADVRNILN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L+ G+V +FK G + F ++ +++ ALE GAED + D I + T+P
Sbjct: 119 KAGGSLATAGAVSRLFKRKGIITFDGEKYTEDQIMEAALEGGAED-VTASDGIIEVSTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F + N+L F++ S+ I M P + K+ K+++ L++ DV+ VY N
Sbjct: 178 EDFEAVLNALNAKNFESMSAEISMVPDAEVSLDKDATSKVMKMIDRLEENDDVQNVYHN 236
>gi|427730634|ref|YP_007076871.1| YebC/PmpR family DNA-binding regulatory protein [Nostoc sp. PCC
7524]
gi|427366553|gb|AFY49274.1| DNA-binding regulatory protein, YebC/PmpR family [Nostoc sp. PCC
7524]
Length = 251
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 141/239 (58%), Gaps = 3/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K +VDAK+GK T++ R + VA G +P N +LR AIEKA A
Sbjct: 1 MAGHSKWANIKRQKAVVDAKKGKTFTQLSRAIIVAARNGIPDPVGNFQLRTAIEKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K + I E+RYEGY G AI+++ +T+NR RT +++R F+
Sbjct: 61 IPNDNIERAIAKGAGTFSDNAI-LEEIRYEGYGPGGVAILIEALTDNRNRTAADLRAAFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL + G V +MF G + ++ LL+ +LE GAE + + +D ++T +
Sbjct: 120 KNGGNLGETGCVSWMFDQKGVCVVQSVVDEDQLLEASLEGGAESYEMTEDETAEVLTEVA 179
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDG-EAIKLQKLLNELKKLHDVKKVYTN 237
+ +L+ GF+ + + P N+ D +A L KL++ L+ L DV+ V +N
Sbjct: 180 NLETLNQTLKEQGFQVSDAELRWIPSNNVEVTDADQARSLLKLIDTLESLDDVQNVTSN 238
>gi|312128076|ref|YP_003992950.1| hypothetical protein Calhy_1871 [Caldicellulosiruptor
hydrothermalis 108]
gi|311778095|gb|ADQ07581.1| protein of unknown function DUF28 [Caldicellulosiruptor
hydrothermalis 108]
Length = 243
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 146/240 (60%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ KK DA++G++ T++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MSGHSKWANIRHKKEKTDAQKGRLFTKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I++ I + Y ++ YEGY G A+IV+ +TNNR RT +R+IF+
Sbjct: 61 MPMDKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + G V +MF G ++ + ++ +++ ALE GAEDF +D+ IITS
Sbjct: 119 KNGGNLGQTGCVSWMFSRKGVIVIEKESFPDEDFVMEKALEYGAEDFS-SEDDIYEIITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +++ LE GF + I M P T + +A K+++L++ L+ DVK+VY N
Sbjct: 178 PEDFSKVREGLEKEGFTFIRAQIEMIPQTTVKLSSEDAQKMRRLIDMLEDNDDVKEVYHN 237
>gi|152979460|ref|YP_001345089.1| hypothetical protein Asuc_1803 [Actinobacillus succinogenes 130Z]
gi|171704379|sp|A6VQA7.1|Y1803_ACTSZ RecName: Full=Probable transcriptional regulatory protein Asuc_1803
gi|150841183|gb|ABR75154.1| protein of unknown function DUF28 [Actinobacillus succinogenes
130Z]
Length = 247
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 141/244 (57%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + +N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDAGSNPRLRAAVDKALASN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETRVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G ++ ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFNKKGLIIIDAGADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ ++++ +E GFK + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 178 EELGDVRDGIEKAGFKIAEAEVSMIPTTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 237
Query: 239 LIFD 242
I D
Sbjct: 238 EISD 241
>gi|433462670|ref|ZP_20420246.1| hypothetical protein D479_13777 [Halobacillus sp. BAB-2008]
gi|432188539|gb|ELK45723.1| hypothetical protein D479_13777 [Halobacillus sp. BAB-2008]
Length = 250
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 150/241 (62%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW+NIK +K DAKRGK+ ++ RE+ +A G +P+TN LRLA++KA N
Sbjct: 1 MAGHSKWSNIKHRKGAQDAKRGKLFMKLAREIFMAAKQGGGDPETNPPLRLAMDKARANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RAI+K ++ + ++Y E YEGY G A++V +T+N+ RT +++R+ FN
Sbjct: 61 MPKDNVDRAIKKATGDL--DGVHYEEYTYEGYGPGGVAVMVKVLTDNKNRTAADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KN GNL + G V FMF+ G L+ L + + ++ A+E GAE+ +D + I T
Sbjct: 119 KNDGNLGENGCVSFMFQRSGYLVIDRSLTDADEEDMMLEAIEAGAEEMETYED-RFEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F +K++L+ +G++ ++ + M P T + K+ KL++ L+ DV++VY
Sbjct: 178 APESFSTVKDALKDSGYQFLTNEVTMIPETYTDLDESGVEKMLKLIDMLEDNDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|222528822|ref|YP_002572704.1| hypothetical protein Athe_0816 [Caldicellulosiruptor bescii DSM
6725]
gi|254806618|sp|B9MQH7.1|Y816_ANATD RecName: Full=Probable transcriptional regulatory protein Athe_0816
gi|222455669|gb|ACM59931.1| protein of unknown function DUF28 [Caldicellulosiruptor bescii DSM
6725]
Length = 243
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK KK DA++GK+ T++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MAGHSKWANIKHKKEKTDAQKGKLFTKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I I++ I + Y ++ YEGY G A+IV+ +TNNR RT +R+IF+
Sbjct: 61 MPMDKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKI-TIIT 176
KNGGNL + G V +MF G ++ + ++ +++ ALE GAEDF +N I IIT
Sbjct: 119 KNGGNLGQTGCVSWMFSRKGVIVIEKESFPDEDFVMEKALEYGAEDFT--SENGIYEIIT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
SP F +++ LE GF + I M P T + +A K+++L++ L+ DVK+VY
Sbjct: 177 SPEDFSKVREGLEKEGFTFIRAQIEMIPQTYVKLSSEDAQKMRRLIDMLEDNDDVKEVYH 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|416048282|ref|ZP_11576242.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|347993292|gb|EGY34664.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
Length = 246
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I R I++ + N+ E R YEGY GAA++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRVIERGVGGGDDTNM---ETRVYEGYGPGGAAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|290967722|ref|ZP_06559277.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera
genomosp. type_1 str. 28L]
gi|290782238|gb|EFD94811.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera
genomosp. type_1 str. 28L]
Length = 241
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 148/241 (61%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA R KI T+I RE+ +A+ G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKRKKGKNDAIRAKITTKIGREITIAVRMGGADPVGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK NI RAIQK E NY E+ YEGY G A+ V+ +T+NR RT +++R++F+
Sbjct: 61 IPKENIKRAIQKGAG--ATEGQNYEEIVYEGYGPAGVAVTVNVLTDNRNRTAADVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN---TKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K G ++ + G V +MF G +F+ + T ++T+++LAL+ GA+D D + IIT
Sbjct: 119 KYGSSMGETGCVGWMFHSKG--IFIVDKAVTDEDTVMELALDAGADDVKT-GDEEFEIIT 175
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++ +L E + I M P I +A K++ L++ L+ L DV+ VY
Sbjct: 176 APENFDSVEKALAEHNIATEHAQITMVPDNLIKLNAEDAEKMETLIDALEDLDDVQDVYH 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|312134701|ref|YP_004002039.1| hypothetical protein Calow_0663 [Caldicellulosiruptor owensensis
OL]
gi|311774752|gb|ADQ04239.1| protein of unknown function DUF28 [Caldicellulosiruptor owensensis
OL]
Length = 243
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 145/240 (60%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANI+ KK DA++G++ T++ REL V A +G +P+TN KLR I KA N
Sbjct: 1 MSGHSKWANIRHKKEKTDAQKGRLFTKLGRELMVVAKMYGPDPETNPKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P I I++ I + Y ++ YEGY G A+IV+ +TNNR RT +R+IF+
Sbjct: 61 MPMEKIMGFIKRAAGEI--DTTGYEDITYEGYGPGGVAVIVEAMTNNRNRTAGELRHIFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + G V +MF G ++ + ++ +++ ALE GAEDF +D+ IITS
Sbjct: 119 KNGGNLGQTGCVSWMFSRKGVIVIEKESFPDEDFVMEKALEYGAEDFS-SEDDIYEIITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +++ LE GF + I M P T + +A K+++L++ L+ DVK+VY N
Sbjct: 178 PEDFSKVREGLEKDGFTFIRAQIEMIPQTTVKLSSDDAQKMRRLIDMLEDNDDVKEVYHN 237
>gi|399993342|ref|YP_006573582.1| hypothetical protein PGA1_c21770 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398657897|gb|AFO91863.1| hypothetical protein PGA1_c21770 [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 246
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 149/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + E +Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKSTAG---EGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + +T++ A++ GAED +D + I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVTYSATVGDADTVMMAAIDAGAEDVDSSEDGHV-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE +++S+ +V +P T KL KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSNALEGELGESDSTKLVWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|124008996|ref|ZP_01693681.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123985422|gb|EAY25330.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 248
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DAKRGKI T++++E+ VA G+ +P+TN +LRLAI+ A N
Sbjct: 1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIKEITVAAKIGSPDPETNPRLRLAIQNAKGVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + +Y E YEGY+ NG A+ V+C T+N RTV+++R+IFN
Sbjct: 61 MPKDNIERAIKKATGA---DGTDYTETTYEGYAPNGIAVFVECTTDNLNRTVASVRSIFN 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL+ GSV F+F G + P +L L G + + D+ I + +
Sbjct: 118 KYGGNLATNGSVEFLFDRKGVFQIIRPEGIDADEFELELADGGAEEVEFSDDYIVVTCAM 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++ L+ +AE++G+ P T++ D + + K++++L+ DV+KVY N
Sbjct: 178 EDFGNVQKKLDEMTIEAENAGLERIPTTSVNLSDEDLQQSMKVIDKLEDDDDVQKVYHN 236
>gi|416052248|ref|ZP_11578141.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|418465829|ref|ZP_13036761.1| hypothetical protein RHAA1_09136 [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|347992163|gb|EGY33579.1| dATP pyrophosphohydrolase [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|359755327|gb|EHK89491.1| hypothetical protein RHAA1_09136 [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 246
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 144/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKISGGDVGSNPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGIGGGDDTNM---ETRVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L++ A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILVNQADEDALMEAAIEGGADDVQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++++E GF E++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDAIEAAGFNVENAEVTMIPSTTVDLDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|343519164|ref|ZP_08756149.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
pittmaniae HK 85]
gi|343392930|gb|EGV05490.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
pittmaniae HK 85]
Length = 246
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGSNPRLRAAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETRVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDGLTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++++E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EELGNVRDAIEKAGFKIQEAEVTMIPSTTVDLDLETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|285808233|gb|ADC35767.1| hypothetical protein [uncultured bacterium 293]
Length = 250
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK KK +DAKRGK+ T+I+RE+ +A G +PD+N +LR A++KA +N
Sbjct: 1 MSGHSKWATIKHKKGALDAKRGKVFTKIIREMTIAARIGGGDPDSNPRLRTAVDKAKASN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQK ++ E +NY + EGY G A++V+ T+NR RTVS IR+IF
Sbjct: 61 MPADNIKRAIQKGTGDL--EGVNYEDFILEGYGPGGVAVLVEGTTDNRNRTVSEIRHIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K G NL GSV ++FK G L + L++LAL+ GA+D + + T P
Sbjct: 119 KQGSNLGGAGSVSYLFKPRGYLAVSSGKISEEKLMELALDAGADD-IQSTGEVFEVYTPP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ + +++ G + E S + P +I + +A ++ KL+ L+ DV+ V+ N
Sbjct: 178 NALDPVLKAIKAAGVEPEESQVGKYPDNHIALEGQKAQQMLKLMEALEDHDDVQNVWAN 236
>gi|15602845|ref|NP_245917.1| hypothetical protein PM0980 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|386833851|ref|YP_006239165.1| hypothetical protein [Pasteurella multocida subsp. multocida str.
3480]
gi|417853653|ref|ZP_12499010.1| hypothetical protein AAUPMG_06024 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|425063677|ref|ZP_18466802.1| hypothetical protein X73_01022 [Pasteurella multocida subsp.
gallicida X73]
gi|425065845|ref|ZP_18468965.1| hypothetical protein P1059_01119 [Pasteurella multocida subsp.
gallicida P1059]
gi|33517096|sp|Q9CM61.1|Y980_PASMU RecName: Full=Probable transcriptional regulatory protein PM0980
gi|12721306|gb|AAK03064.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|338219175|gb|EGP04868.1| hypothetical protein AAUPMG_06024 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|385200551|gb|AFI45406.1| hypothetical protein NT08PM_0251 [Pasteurella multocida subsp.
multocida str. 3480]
gi|404382231|gb|EJZ78692.1| hypothetical protein X73_01022 [Pasteurella multocida subsp.
gallicida X73]
gi|404383340|gb|EJZ79794.1| hypothetical protein P1059_01119 [Pasteurella multocida subsp.
gallicida P1059]
Length = 246
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 146/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVNANPRLRTAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ +++ A+E GA+D + +D + T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILITSGDEDVIMEAAIEAGADDVQVQEDGSFEVYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++ +E G K +++ + M P T + A KL KL++ L+ DV+ VY N
Sbjct: 177 EELGAVRDGIESAGIKIDNAEVTMIPSTTVELDAETAPKLLKLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|366090041|ref|ZP_09456407.1| hypothetical protein LaciK1_07704 [Lactobacillus acidipiscis KCTC
13900]
Length = 239
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 145/242 (59%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI +I REL +A G +PD+N +LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKISRELYMAAKSGGPDPDSNPQLRLMMDKARSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K + +Y E+ YEGY G A +V +T+NR RT S +R F+
Sbjct: 61 MPKDNIKRAIDKASGA---NGADYEEITYEGYGPAGVAFLVHTLTDNRNRTASAVRADFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
NGG+L + GSV FMF G + + + ++ + + ++ GA+D D D+ I T
Sbjct: 118 HNGGSLGESGSVSFMFDRKGYIAIVREGLDADEDQMFEDVIDAGADDLQTD-DDVFEIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F E++++L+ ++ S+ + M P T + D + K+Q+L++ L+ DV +VYT
Sbjct: 177 DPKAFPEVRDALQKK-YELASAELTMVPKTTVEVPDDKLEKVQRLIDHLEDEDDVSEVYT 235
Query: 237 NA 238
+A
Sbjct: 236 SA 237
>gi|206900756|ref|YP_002251322.1| hypothetical protein DICTH_1505 [Dictyoglomus thermophilum H-6-12]
gi|226734671|sp|B5YFL4.1|Y1505_DICT6 RecName: Full=Probable transcriptional regulatory protein
DICTH_1505
gi|206739859|gb|ACI18917.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 249
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 153/246 (62%), Gaps = 8/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK +K DAK+GK+ +++ +E+ +A G NP+TN +LR AIE+A +AN
Sbjct: 1 MSGHSKWANIKHRKAAADAKKGKLFSQLSKEIIIAAKHGGGNPETNPRLRAAIERAKEAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI +AI + I + Y EV YEGY G AI+V+ +T+N+ RT + IR IF
Sbjct: 61 MPKENIEKAIMRGIGAIPG--VAYEEVTYEGYGPGGVAIMVEVVTDNKNRTAAEIRRIFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK--NTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GG+L + G V ++F+ G + + K + L+ ALE GAED I D+ + IITS
Sbjct: 119 KHGGSLGEAGCVAWIFEDKGSIFIEKESVKDEDQLIADALEAGAEDVQISGDS-VEIITS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDG-EAIKLQKLLNELKKLHDVKKVYT 236
P F E+KN LE G+K + + P N+V DG +A K+ KL+ EL+ DV+K Y
Sbjct: 178 PENFSEVKNVLEEKGYKITQAEVTKVP-KNVVPVDGPDAEKVLKLMEELEDHDDVQKTYA 236
Query: 237 NALIFD 242
N I D
Sbjct: 237 NFDIPD 242
>gi|302035796|ref|YP_003796118.1| hypothetical protein NIDE0415 [Candidatus Nitrospira defluvii]
gi|300603860|emb|CBK40192.1| conserved protein of unknown function UPF0082, DUF28 [Candidatus
Nitrospira defluvii]
Length = 251
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 139/243 (57%), Gaps = 4/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M GHS WA IKR K VDAKRGK+ TRI+REL +A G +PD N +LRLAI KA +AN+
Sbjct: 1 MGGHSHWATIKRHKSAVDAKRGKVFTRIIRELTIAARSGGDPDGNPRLRLAIAKAKEANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P + + +AIQ+ + + Y E EGY G A++++ ++NR RTV+ IR++ K
Sbjct: 61 PGDTMKKAIQRGTGELP--GVTYEEFTLEGYGPGGTAVLMEITSDNRNRTVAEIRSLLTK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
NGGN+++ G+V + F G L+ +++ LL LALE GAED + D I T
Sbjct: 119 NGGNMAEAGAVAWQFHKKGVLVVEKGKVEEDALLSLALEAGAEDVKV-TDKAFEIFTDTH 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K +L + + + P I ++ A ++ KL+ L + DV+KVY N
Sbjct: 178 DFEAVKKALSDAKIECTLAELNFIPQNTIALEEKAAEQMLKLMEILDEHDDVQKVYANFD 237
Query: 240 IFD 242
I D
Sbjct: 238 ISD 240
>gi|374993611|ref|YP_004969110.1| YebC/PmpR family DNA-binding regulatory protein [Desulfosporosinus
orientis DSM 765]
gi|357211977|gb|AET66595.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfosporosinus
orientis DSM 765]
Length = 248
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 142/241 (58%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW+NIK KK DA++GK+ T++ REL +A + +L++AIE A N+
Sbjct: 1 MSGHSKWSNIKHKKGKADAQKGKVFTKLGRELLIASRACGGDVNDFRLKIAIENAKAQNV 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P NI RAIQK E NY E+RYEGY G AI++D +T+NR RT +R+IF+K
Sbjct: 61 PNENIQRAIQKGAGGA--EGANYEELRYEGYGPGGVAIMIDILTDNRNRTAGEVRHIFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT---LLDLALEKGAEDFLIDKDNKITIITS 177
NGGN+ + GSV +MF+ GQL L K T L+ +ALE GAEDF D++ ++T+
Sbjct: 119 NGGNMGETGSVGWMFEDKGQLRILREGLKLTEDDLMMMALEAGAEDFEADEEG-FVVLTA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYT 236
PS ++ +L E S + P I D +A K+ L+N+L+ D + VY+
Sbjct: 178 PSDMEAVRQALIDQNIPIEESVLSPMPQNTIEITDPDQARKIVNLMNKLEDHDDSQGVYS 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|227825062|ref|ZP_03989894.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352684147|ref|YP_004896132.1| hypothetical protein Acin_0759 [Acidaminococcus intestini RyC-MR95]
gi|226905561|gb|EEH91479.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350278802|gb|AEQ21992.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 243
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 146/245 (59%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA RGKI T+I RE+ +A+ G++P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKFKKGKADALRGKINTKIGREITIAVKMGGSDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK NI RAI K E NY E+ YEGY G AI++ +T+NR RT +++R++F+
Sbjct: 61 IPKENIKRAIAKGEGTT--EGSNYEEITYEGYGPAGVAIMISALTDNRNRTAADVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN--TKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGN+ + G V +MFK+ G ++ ++++ALE GAED + D + I T+
Sbjct: 119 K-GGNMGESGCVSWMFKNKGLFTIEKEGAPAEDEVMEIALEAGAEDMETNDDTYV-ITTA 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + ++ +L S + + P I +A K+QK+++ +L DV+ VYTN
Sbjct: 177 PEDYDAVEQALADHNINVAMSELSLIPDNTIAVTGEDAEKVQKMIDSFDELDDVQDVYTN 236
Query: 238 ALIFD 242
A + D
Sbjct: 237 ADLPD 241
>gi|52424765|ref|YP_087902.1| hypothetical protein MS0710 [Mannheimia succiniciproducens MBEL55E]
gi|60390792|sp|Q65UP3.1|Y710_MANSM RecName: Full=Probable transcriptional regulatory protein MS0710
gi|52306817|gb|AAU37317.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 247
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 141/244 (57%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + +N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDAGSNPRLRAAVDKALASN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E R YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETRIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G ++ ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFNKKGLIIIDAGADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ ++++ +E GFK + + M P T++ A KL +L+ L+ DV+ VY N
Sbjct: 178 EELGDVRDGIEKAGFKIAEAEVSMIPTTSVDLDAETAPKLLRLIEMLEDCDDVQNVYHNG 237
Query: 239 LIFD 242
I D
Sbjct: 238 EISD 241
>gi|387929874|ref|ZP_10132551.1| hypothetical protein PB1_15699 [Bacillus methanolicus PB1]
gi|387586692|gb|EIJ79016.1| hypothetical protein PB1_15699 [Bacillus methanolicus PB1]
Length = 242
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 142/244 (58%), Gaps = 13/244 (5%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DAKRGKI + +++ VA N G +P TN LRL I+KA N
Sbjct: 1 MAGHSKWKNIQRRKNSQDAKRGKIFMKYAKDIYVAAKNGGGDPATNPSLRLVIDKAKAVN 60
Query: 60 IPKNNIFRAIQKN---NSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRN 116
+P NI RAI K S+ K Y E+ YEGY G A++V C+T+N+ RT SNIR
Sbjct: 61 MPNENIQRAINKAIGVGSSAK-----YEEIIYEGYGPGGVAVMVQCLTDNKNRTASNIRL 115
Query: 117 IFNKNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKIT 173
F+KNGGNL + GSV +MF G L+ ++ +L A+E GAE+ ++
Sbjct: 116 AFSKNGGNLGESGSVSYMFDRKGYLVIDREELEIDEDEMLLQAIEAGAEEMETSEE-AFE 174
Query: 174 IITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKK 233
I + P F+E+K +LE GF E + I M P T + A K++KLL+ L+ DV+
Sbjct: 175 IFSDPEHFMEVKENLEKLGFTFEEAEITMIPQTYTQLNEEMAAKMEKLLDMLENDEDVQD 234
Query: 234 VYTN 237
++ N
Sbjct: 235 IFHN 238
>gi|89071234|ref|ZP_01158415.1| hypothetical protein OG2516_04648 [Oceanicola granulosus HTCC2516]
gi|89043247|gb|EAR49476.1| hypothetical protein OG2516_04648 [Oceanicola granulosus HTCC2516]
Length = 249
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 148/240 (61%), Gaps = 8/240 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPDKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K + + NY E+RYEGY G A+IV+ +T+NR RT S +R+ F
Sbjct: 61 VPKDVIDRAIKKA---VGGDAENYEEIRYEGYGPGGVAVIVEAMTDNRNRTASTVRSTFG 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ GQ+++ + ++ A+E GAED + + I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGQVVYPAAAGDADDIMMAAIEAGAEDVESGEKEHV-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE ++ES+ +V RP T D E + KL KL++ L+ D++ V TN
Sbjct: 177 TDLAEVSNALEAQLGESESTKLVWRPTTTAEL-DLEGLQKLMKLVDALEDDDDIQSVTTN 235
>gi|32033872|ref|ZP_00134143.1| COG0217: Uncharacterized conserved protein [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208621|ref|YP_001053846.1| hypothetical protein APL_1151 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|190150479|ref|YP_001969004.1| hypothetical protein APP7_1210 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250099|ref|ZP_07336301.1| hypothetical protein APP6_1511 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303253273|ref|ZP_07339422.1| hypothetical protein APP2_0580 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248174|ref|ZP_07530202.1| hypothetical protein appser2_11550 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307250407|ref|ZP_07532354.1| hypothetical protein appser4_11880 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252789|ref|ZP_07534680.1| hypothetical protein appser6_13030 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307257205|ref|ZP_07538977.1| hypothetical protein appser10_12050 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307261633|ref|ZP_07543301.1| hypothetical protein appser12_11940 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263823|ref|ZP_07545428.1| hypothetical protein appser13_12330 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|166228895|sp|A3N1F5.1|Y1151_ACTP2 RecName: Full=Probable transcriptional regulatory protein APL_1151
gi|226696275|sp|B3GY39.1|Y1210_ACTP7 RecName: Full=Probable transcriptional regulatory protein APP7_1210
gi|126097413|gb|ABN74241.1| hypothetical protein APL_1151 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|189915610|gb|ACE61862.1| hypothetical protein APP7_1210 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302647955|gb|EFL78162.1| hypothetical protein APP2_0580 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302651162|gb|EFL81316.1| hypothetical protein APP6_1511 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306855351|gb|EFM87526.1| hypothetical protein appser2_11550 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306857536|gb|EFM89645.1| hypothetical protein appser4_11880 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306859821|gb|EFM91843.1| hypothetical protein appser6_13030 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306864367|gb|EFM96278.1| hypothetical protein appser10_12050 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306868756|gb|EFN00565.1| hypothetical protein appser12_11940 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870812|gb|EFN02551.1| hypothetical protein appser13_12330 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 246
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRSAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASGDEDALTEAAIEAGADDIQPQEDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKIQEAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|410728818|ref|ZP_11366907.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
Maddingley MBC34-26]
gi|410596532|gb|EKQ51198.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
Maddingley MBC34-26]
Length = 246
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 147/240 (61%), Gaps = 4/240 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T+I +E+ +A+ N G N DTN KLR + KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKTDAKRGKIFTKIGKEIVMAVKNGGANQDTNAKLRDVVAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I +AI+K + + + +NY + YEGY +G A+IV+ +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTISKAIKKASGELSS--VNYENIVYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ G V FMF+ G+++ + + ++ +AL+ GAEDF D++ + T+P
Sbjct: 119 KGGGNMGTAGCVSFMFQEKGEIIIEKEDRDEEEIMMMALDAGAEDFSADEEEVFVVTTTP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +LE G + + + P T + +A K QK+L+ L+ DV++VY NA
Sbjct: 179 EDFGTVREALEAQGIEFLEAAVKKIPDTYTAIDEADAKKFQKMLDLLEDDDDVQEVYHNA 238
>gi|373485702|ref|ZP_09576390.1| protein of unknown function DUF28 [Holophaga foetida DSM 6591]
gi|372013140|gb|EHP13670.1| protein of unknown function DUF28 [Holophaga foetida DSM 6591]
Length = 243
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAKRGKI TRI++E+ VA G + N +LRLA+++A +N
Sbjct: 1 MSGHNKWSTIKHKKGAADAKRGKIFTRILKEITVAARLGGGDVGANPRLRLAVDQAKASN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N RAI+K ++ + ++Y EV+YEGY GAAIIV+ +T+N+ RT IR+ F
Sbjct: 61 MPKDNWERAIKKGTGDL--DGVSYEEVQYEGYGPGGAAIIVEALTDNKNRTTPEIRSYFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K G +L SV +MF GQ++ P+ ++ ++++ALE GA+D + +D I T+P
Sbjct: 119 KFGSDLGALNSVSYMFTKQGQIVVDPSVDEDRIMEVALEAGADD-VERQDEAWIITTAPE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +K++++ G S I+ T+ D + KL++ L+ DV+ V+ NA
Sbjct: 178 AYQAVKDAVDAAGLPVLESQIIKAASTSAAIPDDKLKSFLKLIDLLEDNDDVQNVWHNA 236
>gi|339502710|ref|YP_004690130.1| hypothetical protein RLO149_c011630 [Roseobacter litoralis Och 149]
gi|338756703|gb|AEI93167.1| hypothetical protein DUF28 [Roseobacter litoralis Och 149]
Length = 246
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 146/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRAKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K+ +E Y E+RYEGY NG A+IV+ +T+NR RT S +R+ F
Sbjct: 61 MPKDNIDRAIKKSQVGDGDE---YEEIRYEGYGPNGVAVIVETMTDNRNRTASTVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + +T+L A+E GAED +D I I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVTYPAEVGDADTVLMAAIEAGAEDVESSEDGHI-IWCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ +LE ++ES+ +V +P T KL +L++ L+ DV++V N
Sbjct: 177 TDLNEVATALEAELGESESTKLVWKPTTTTEMDLEGMQKLMRLIDALEDDDDVQRVTAN 235
>gi|16079834|ref|NP_390660.1| hypothetical protein BSU27820 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221315046|ref|ZP_03596851.1| hypothetical protein BsubsN3_15117 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319966|ref|ZP_03601260.1| hypothetical protein BsubsJ_15033 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|402776938|ref|YP_006630882.1| protein YrbC [Bacillus subtilis QB928]
gi|452915573|ref|ZP_21964199.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
gi|6226494|sp|P94447.2|YRBC_BACSU RecName: Full=Probable transcriptional regulatory protein YrbC
gi|2635247|emb|CAB14742.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|6977799|emb|CAB75324.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
gi|402482118|gb|AFQ58627.1| YrbC [Bacillus subtilis QB928]
gi|407959977|dbj|BAM53217.1| hypothetical protein BEST7613_4286 [Bacillus subtilis BEST7613]
gi|407965620|dbj|BAM58859.1| hypothetical protein BEST7003_2658 [Bacillus subtilis BEST7003]
gi|452115921|gb|EME06317.1| DNA-binding regulatory , YebC/PmpR family protein [Bacillus
subtilis MB73/2]
Length = 240
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 147/243 (60%), Gaps = 12/243 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K DAKRGKI ++ +E+ VA G +P+ N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + +Y E+ YEGY +G A++V+C+T+N+ RT SN+R FN
Sbjct: 61 MPNENIDRAIKKAAGG--QDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT-----LLDLALEKGAEDFLIDKDNKITI 174
KNGG+L + G V F+F+ G + + T++ +LD+ LE G E+ I++D +
Sbjct: 119 KNGGSLGESGCVAFLFERKG-FITIDRTERQIEEDELMLDV-LEAGGEELRIEED-LYEV 175
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
T P F E+K +LE + + S+ + M P T D KL+ L++ L+ DV++V
Sbjct: 176 FTEPEHFEEVKTALE-SKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 234
Query: 235 YTN 237
YTN
Sbjct: 235 YTN 237
>gi|418032038|ref|ZP_12670521.1| hypothetical protein BSSC8_14650 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351470901|gb|EHA31022.1| hypothetical protein BSSC8_14650 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 251
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 147/243 (60%), Gaps = 12/243 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K DAKRGKI ++ +E+ VA G +P+ N LRL IEKA AN
Sbjct: 12 MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN 71
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + +Y E+ YEGY +G A++V+C+T+N+ RT SN+R FN
Sbjct: 72 MPNENIDRAIKKAAGG--QDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFN 129
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT-----LLDLALEKGAEDFLIDKDNKITI 174
KNGG+L + G V F+F+ G + + T++ +LD+ LE G E+ I++D +
Sbjct: 130 KNGGSLGESGCVAFLFERKG-FITIDRTERQIEEDELMLDV-LEAGGEELRIEED-LYEV 186
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
T P F E+K +LE + + S+ + M P T D KL+ L++ L+ DV++V
Sbjct: 187 FTEPEHFEEVKTALE-SKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 245
Query: 235 YTN 237
YTN
Sbjct: 246 YTN 248
>gi|389736008|ref|ZP_10189611.1| YebC/PmpR family DNA-binding regulatory protein [Rhodanobacter sp.
115]
gi|388440078|gb|EIL96498.1| YebC/PmpR family DNA-binding regulatory protein [Rhodanobacter sp.
115]
Length = 239
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 143/240 (59%), Gaps = 7/240 (2%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKR K+ T+++RE+ VA G +P N +LR A++KAL AN+ K+
Sbjct: 2 GRGPSIEGRKNAEDAKRAKVFTKLIREITVATRSGVADPAGNPRLRAAMDKALAANMTKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI++ + ++ E+RYEGY G A+I+DC T+N RTV+++R+ ++GG
Sbjct: 62 TIERAIKRGSGADGGADMQ--ELRYEGYGPAGIALIIDCFTDNPTRTVADVRHALTRHGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
NL GSV F F CG+L+F + +L+ ALE GA+D ++++ + T++ +P
Sbjct: 120 NLGTSGSVAFQFTRCGELVFATRGDEAAEEKVLEAALEAGADD-VVNEHGESTVLCAPED 178
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
F ++ +L G ++E +G+ MRP + + L LL +L L DV +VY NAL+
Sbjct: 179 FETVQQALSAAGLESEHAGVSMRPNNRVAVPEDAQETLATLLEKLDALDDVSEVYHNALL 238
>gi|330836551|ref|YP_004411192.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
gi|329748454|gb|AEC01810.1| UPF0082 protein yeeN [Sphaerochaeta coccoides DSM 17374]
Length = 247
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKWA IK KK I DAKRG+ T++++E+ VA G +PDTN LR AI KA AN+
Sbjct: 1 MSGHSKWATIKHKKGIADAKRGQAFTKVIKEITVAAKNGADPDTNAALRTAILKAKAANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
PK+NI RAI+K + + + I Y E+ YEGY+ G AII+D +T+N+ RT +++R+ K
Sbjct: 61 PKDNIERAIKKGSGEM-GDAIFY-ELTYEGYAPGGVAIIIDTLTDNKNRTAADVRSTLTK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
GG+L GSV + F+ G + + ++ +L+ AL GAED D + I + T+P+
Sbjct: 119 LGGSLGATGSVSYQFQTKGVITYDEGKYTEDEILEAALNVGAEDVSGDGE-VIEVTTAPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F + S++ G++ S+ + T I +A K+ +++ +L+ L DV++V TN
Sbjct: 178 DFANVLESMQAAGYEQMSAEVSKIADTTIALDSEKARKVLRIVEKLEDLDDVQQVATN 235
>gi|163781653|ref|ZP_02176653.1| hypothetical protein HG1285_02183 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882873|gb|EDP76377.1| hypothetical protein HG1285_02183 [Hydrogenivirga sp. 128-5-R1-1]
Length = 250
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 147/241 (60%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHS WA IK KK VDA+RGK+ ++++RE+ VA G +NP+ N +LR AIE+A AN
Sbjct: 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREITVAARLGGSNPEFNPRLRTAIEQAKKAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P I RAI+K + ++ E Y EV YEGY+ G A++V T+NR RT + +++ F+
Sbjct: 61 MPLETIERAIKKGSGELEGET--YEEVIYEGYAPGGVAVMVLATTDNRNRTSAEVKHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITII-TS 177
K+GG+L G V ++F+ G + + ++ L + A+E GAED I +++ ++ TS
Sbjct: 119 KHGGSLGSSGCVSYLFERKGAIEVPASEVSEDELFEKAVEAGAED--IQSGSEVHLVYTS 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYT 236
P + ++K LE G E + I P + + +D E A K+ +L++ L L DV++V
Sbjct: 177 PEELYQVKEGLEKAGVPVEKAHITWIPVSTVSVEDAETAKKVLRLIDALDDLEDVQQVIA 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|260654959|ref|ZP_05860447.1| glucose-1-phosphate adenylyltransferase [Jonquetella anthropi E3_33
E1]
gi|424844819|ref|ZP_18269430.1| DNA-binding regulatory protein, YebC/PmpR family [Jonquetella
anthropi DSM 22815]
gi|260630274|gb|EEX48468.1| glucose-1-phosphate adenylyltransferase [Jonquetella anthropi E3_33
E1]
gi|363986257|gb|EHM13087.1| DNA-binding regulatory protein, YebC/PmpR family [Jonquetella
anthropi DSM 22815]
Length = 251
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 142/239 (59%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK +K DAKRG + ++++ + +A + G +P N++L+ AI++A A+
Sbjct: 1 MSGHSKWANIKHRKAAQDAKRGNLFQKLVKAIIIAAKDGGGDPAMNVRLKAAIDRAKAAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQ+ I E Y E+ YEGY V G A++V +T+NR RT IR +
Sbjct: 61 VPASNIDRAIQRGTGEI--EGAMYEELTYEGYGVEGVALVVSVLTDNRNRTTPEIRAMLE 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
NGG + GSV++MF GQ+ ++ LL+ ALE GA+D +++D+ + + T P+
Sbjct: 119 HNGGTMGTSGSVMWMFDRKGQITIEGKVDEDELLNAALEAGADDVEVEEDSAL-VTTDPA 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
++ SL+ G+ + + P T + + +A KL KL++ L+ DV+ VY N
Sbjct: 178 SLSDVAESLKKAGYNVTEAEQPLVPKTTVTISEVNKARKLMKLIDLLEGHDDVQDVYAN 236
>gi|84501557|ref|ZP_00999729.1| hypothetical protein OB2597_15185 [Oceanicola batsensis HTCC2597]
gi|84390178|gb|EAQ02737.1| hypothetical protein OB2597_15185 [Oceanicola batsensis HTCC2597]
Length = 246
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPDKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + + +Y E+RYEGY NG A+IV+ +T+NR RT SN+R+ F+
Sbjct: 61 VPKDVIERAIKKSQAG---DGDDYEEIRYEGYGPNGVAVIVEAMTDNRNRTASNVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++ + +T+L A+E GAED +D I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGEVTYPAEVGDADTVLMAAIEAGAEDVESTEDGHY-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++ +LE ++ES+ ++ +P T KL KL+ L+ DV++V N
Sbjct: 177 TDLNDVAGALETELGESESTKLIWKPTTTTEMDLDGMQKLMKLIEALEDDDDVQRVTAN 235
>gi|334340937|ref|YP_004545917.1| hypothetical protein [Desulfotomaculum ruminis DSM 2154]
gi|334092291|gb|AEG60631.1| protein of unknown function DUF28 [Desulfotomaculum ruminis DSM
2154]
Length = 243
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 145/241 (60%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK +DA+RGK+ TR+ +E+ +A N G +P N +L+ A+EKA +AN
Sbjct: 1 MSGHSKWSTIKRKKAKIDAQRGKLFTRLSKEIIIAARNGGPDPAGNRRLKTAVEKAREAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAIQK E N+ E YEGY G A+++ T+NR RT + +R+I +
Sbjct: 61 IPNDNIQRAIQKGAGG--GEGANFEEFAYEGYGPGGVAVLIYVATDNRNRTAAEVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL---ALEKGAEDFLIDKDNKITIIT 176
K GGNL + G V +MFK G L+ + K + DL ALE GAED ++D+ I T
Sbjct: 119 KQGGNLGESGCVNWMFKEKGILILDRSQIKMSEDDLMLAALEAGAEDIKTEEDS-FEITT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P F ++ +L+ G + + M T + + EA K+ K+++ L+ DV+ VYT
Sbjct: 178 APEDFEKVCEALKQQGIPLADAELSMVAQTMVKLQGDEAEKMVKIIDLLEDNDDVQAVYT 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|408791758|ref|ZP_11203368.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira meyeri
serovar Hardjo str. Went 5]
gi|408463168|gb|EKJ86893.1| DNA-binding regulatory protein, YebC/PmpR family [Leptospira meyeri
serovar Hardjo str. Went 5]
Length = 247
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 146/240 (60%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA I+RKK +DAKRG I TRI +E+ VA G + + N +LRLA+ KA AN
Sbjct: 1 MSGHSKWATIRRKKGAIDAKRGAIFTRIAKEISVAAKEGGGDQEGNPRLRLAVTKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E + Y E YE Y++ G AI+VD +T+ + RT I++I
Sbjct: 61 MPKDNIERAIKKGTGGL--EGMVYEECLYECYALGGVAIMVDVLTDKKSRTTPEIKSILT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L+ G+V +F+ GQ+ L + L DLAL GAED ++ D T+IT+P
Sbjct: 119 KLGGSLANAGAVSRLFERKGQITLKADQISEEALFDLALGAGAEDIQVN-DGMYTVITAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+++ ++++L G E S I P T + D E A K+ KL++ L+ DV+ V +N
Sbjct: 178 AEYEAVQSALSTKGLNMEESEIKYIPMTTVEVNDKETAEKVMKLIDNLEANDDVQVVSSN 237
>gi|335356400|ref|ZP_08548270.1| hypothetical protein LaniK3_00100 [Lactobacillus animalis KCTC
3501]
Length = 243
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 144/246 (58%), Gaps = 9/246 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI +I R+L +A G +PD N +LRL +EKA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKISRDLYMAAKSGGPDPDANPQLRLVMEKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K NY E+ YEGY G AI+V +T+NR RT S +R FN
Sbjct: 61 MPKDNIKRALDKATGA---NGANYEEITYEGYGPAGVAILVHALTDNRNRTASAVRTDFN 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGGNL + GSV FMF G + + + ++ + + +E GAED L D I T
Sbjct: 118 RNGGNLGETGSVSFMFDRKGYIAIVREDLDVDEDQMFEDVIEAGAED-LQTSDEVFEIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F +++++L+ + +S+ I M P + + + +LQ+L++ L+ DV +V+T
Sbjct: 177 EPKIFEDVRDALQAK-YDLDSAEITMVPQNTVPVPEDKVEQLQRLIDRLEDEDDVSEVFT 235
Query: 237 NALIFD 242
+A D
Sbjct: 236 SAEFPD 241
>gi|342217511|ref|ZP_08710153.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 135-E]
gi|341593858|gb|EGS36676.1| DNA-binding regulatory protein, YebC/PmpR family [Megasphaera sp.
UPII 135-E]
Length = 242
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 149/241 (61%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIKRKK DA R KI T+I RE+ +A+ G++P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKRKKGKNDAIRAKITTKISREITIAVRMGGSDPVGNMRLKLALQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAIQK E Y ++ YEGY G A+ V+ +T+NR R + +R++F+
Sbjct: 61 IPKDNIKRAIQKGAG--ATEGQKYEDIVYEGYGPAGVAVTVNVLTDNRNRAAAEVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K G + + G V +MF H + + T+ ++T++++AL+ GA+D DN+ I+T+
Sbjct: 119 KYGSGMGETGCVGWMF-HSKGIFGVSKTQADEDTVMEVALDAGADDVKT-GDNEFEIVTA 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++ +L + E + I M P T I + +A K++ L++ L+ L DV+ VY N
Sbjct: 177 PDVFDAVEQALVEHQIETEHAQITMVPDTMITLNEQDAEKMEILIDALEDLDDVQDVYHN 236
Query: 238 A 238
Sbjct: 237 G 237
>gi|325290234|ref|YP_004266415.1| hypothetical protein Sgly_2123 [Syntrophobotulus glycolicus DSM
8271]
gi|324965635|gb|ADY56414.1| UPF0082 protein yeeN [Syntrophobotulus glycolicus DSM 8271]
Length = 251
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 146/242 (60%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA +GK+ T++ RE+ +A G+ +P+ N +L++AI+ A AN
Sbjct: 1 MSGHSKWANIKHKKARTDAAKGKLYTKLAREIFIAARAGSPDPNNNFRLKIAIDNAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RA+QK + ++ NY E+RYEGY G AI+ +T+NR R+ S +R+IF+
Sbjct: 61 LPNENIQRAVQKGSGT--GDDTNYEELRYEGYGPGGVAIMATILTDNRNRSASEMRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGN+ G V +MF GQL ++ LL ALE GAED + D + T
Sbjct: 119 KNGGNMGDSGCVGWMFAEKGQLSIAKEGLALNEDDLLLFALEAGAEDIETE-DEGYEVFT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVY 235
+P +++ SL G + +++ + + P + D +A K+ KL++ L++ DV+ VY
Sbjct: 178 APENMEQVRQSLIDGGIQIQTANVSLIPENRMEISDLDQAKKIIKLIDTLEEHDDVQNVY 237
Query: 236 TN 237
TN
Sbjct: 238 TN 239
>gi|165976578|ref|YP_001652171.1| hypothetical protein APJL_1171 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307246066|ref|ZP_07528148.1| hypothetical protein appser1_12690 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255048|ref|ZP_07536866.1| hypothetical protein appser9_12820 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259484|ref|ZP_07541209.1| hypothetical protein appser11_12810 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|226696252|sp|B0BQ92.1|Y1171_ACTPJ RecName: Full=Probable transcriptional regulatory protein APJL_1171
gi|165876679|gb|ABY69727.1| hypothetical protein APJL_1171 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306853001|gb|EFM85224.1| hypothetical protein appser1_12690 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306861921|gb|EFM93897.1| hypothetical protein appser9_12820 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866420|gb|EFM98283.1| hypothetical protein appser11_12810 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 246
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRSAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ L + A+E GA+D +D + T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIASGDEDALTEAAIEAGADDIQPQEDGSFEVYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL L+N L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKIQEAEVTMIPSTTVELDAETAPKLLDLINRLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|161899028|ref|YP_613888.2| hypothetical protein TM1040_1893 [Ruegeria sp. TM1040]
gi|118574104|sp|Q1GFE0.2|Y1893_SILST RecName: Full=Probable transcriptional regulatory protein
TM1040_1893
Length = 246
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 149/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K + NY E+RYEGY NG A+IV+ +T+N+ RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKATGG---DAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++ + + +T++ A+E GAED +D + I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGAEDVESSEDGHV-IFCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE ++ES+ ++ +P T KL KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|251771398|gb|EES51977.1| conserved protein of unknown function [Leptospirillum
ferrodiazotrophum]
Length = 251
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 142/240 (59%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA K KK ++D+KRGK+ TR+ +E+ +A G +PD N +LR AI KA + N
Sbjct: 1 MSGHSKWATTKHKKALIDSKRGKVFTRLSKEISIAARLGGGDPDGNPRLRTAIAKAREEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI +AIQK I Y E++YEG+ G AI++ T+N+ RT+ IR++F+
Sbjct: 61 MPMDNIKKAIQKGTGEIPG--AVYEELQYEGHGPKGVAILLKVTTDNKNRTIPEIRSLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT--KKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGG L + G V +MF G L+ P + ++ L+++A+ GAED +D D+ + T+
Sbjct: 119 KNGGALGENGCVAWMFDQKG-LITTPASGVTEDRLMEIAINAGAEDVRLD-DDVFEVTTA 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F + +++ G + + M P T + + EA + +L+ L+ DV+ VY N
Sbjct: 177 PEDFPAVCDAMRAAGLVLPYAEVTMIPQTTVPLEGKEAQAMVRLMEALEDHDDVQHVYAN 236
>gi|221310721|ref|ZP_03592568.1| hypothetical protein Bsubs1_15211 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221324247|ref|ZP_03605541.1| hypothetical protein BsubsS_15177 [Bacillus subtilis subsp.
subtilis str. SMY]
Length = 260
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 147/243 (60%), Gaps = 12/243 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K DAKRGKI ++ +E+ VA G +P+ N LRL IEKA AN
Sbjct: 21 MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN 80
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + +Y E+ YEGY +G A++V+C+T+N+ RT SN+R FN
Sbjct: 81 MPNENIDRAIKKAAGG--QDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFN 138
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT-----LLDLALEKGAEDFLIDKDNKITI 174
KNGG+L + G V F+F+ G + + T++ +LD+ LE G E+ I++D +
Sbjct: 139 KNGGSLGESGCVAFLFERKG-FITIDRTERQIEEDELMLDV-LEAGGEELRIEED-LYEV 195
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
T P F E+K +LE + + S+ + M P T D KL+ L++ L+ DV++V
Sbjct: 196 FTEPEHFEEVKTALE-SKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 254
Query: 235 YTN 237
YTN
Sbjct: 255 YTN 257
>gi|431794443|ref|YP_007221348.1| YebC/PmpR family DNA-binding regulatory protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784669|gb|AGA69952.1| DNA-binding regulatory protein, YebC/PmpR family
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 252
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 149/247 (60%), Gaps = 8/247 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA++GK+ T++ REL VA + G +P+ N +L++AI+ A AN
Sbjct: 1 MSGHSKWANIKHKKAKADAQKGKVFTKLGRELIVAARSGGGDPNNNFRLKIAIDNAKVAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQK + E+ Y E+RYEGY G AI+VD +T+NR RT +R+IF+
Sbjct: 61 MPNDNIQRAIQKGAGGAEGES--YEELRYEGYGPGGVAIMVDIMTDNRNRTAGEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K+GGNL + GSV +MF GQL L ++ L+ +ALE GAED D+++ I + T
Sbjct: 119 KHGGNLGETGSVNWMFDEKGQLTILKEDLPFDEDELMLIALEAGAEDLQQDEESFI-VYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVY 235
+P ++ +L G E + P +I D +A KL +++ L+ D + VY
Sbjct: 178 APGDIEAVRQALIDQGIAIEEAIKNQVPQNSIEITDVDQAKKLFRMMELLEDHDDSQGVY 237
Query: 236 TNALIFD 242
N + D
Sbjct: 238 ANFELAD 244
>gi|89055871|ref|YP_511322.1| hypothetical protein Jann_3380 [Jannaschia sp. CCS1]
gi|119391968|sp|Q28LW5.1|Y3380_JANSC RecName: Full=Probable transcriptional regulatory protein Jann_3380
gi|88865420|gb|ABD56297.1| protein of unknown function DUF28 [Jannaschia sp. CCS1]
Length = 255
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 149/250 (59%), Gaps = 11/250 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D R K+ +++ +E+ VA G+ +PD N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDKLRAKVFSKMSKEITVAAKMGDPDPDKNPRLRLAVKEAKSVS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI K ++ NY E+RYEGY NG A+IV+ +T+N+ RT S +R+ F
Sbjct: 61 VPKDVIERAIAKATGG---DSENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLI---DKDNKI--- 172
KNGGNL + GSV FMF GQ+ + L +T++ A+E GAED D D +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGQVTYPLSAGDADTIMMAAIEAGAEDVETNEGDGDEDLGGH 177
Query: 173 TIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVK 232
I + + ++ N+LE ++ES+ +V RP T +A KL +L++ L++ DV+
Sbjct: 178 VIWCADTDLNDVSNALEADLGESESTKLVWRPTTTTELGLEDAQKLMRLIDALEEDDDVQ 237
Query: 233 KVYTNALIFD 242
V N I D
Sbjct: 238 TVTANFEISD 247
>gi|402548780|ref|ZP_10845633.1| hypothetical protein SclubS_02129 [SAR86 cluster bacterium SAR86C]
Length = 245
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANIK +K DA RGK+ T+++RE+ VA G +PD N +LRLA++KA AN+
Sbjct: 1 MAGHSKWANIKHRKARQDASRGKVWTKVIREITVAAKGGPDPDDNPRLRLALDKANAANM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
PK+NI RAI+K + E E+ +EGY G AI+V+ +T+NR RTVS++R+ F+K
Sbjct: 61 PKDNIKRAIEKGSGT--GETGALEEIIFEGYGPGGVAILVETMTDNRNRTVSDVRHAFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
GGNL +GSV ++F G + T + L+D+ LE GA+D L+D+ II+S S
Sbjct: 119 FGGNLGTDGSVSYLFNKIGIIHISKVTSEEELMDIVLESGADD-LVDEGEYFEIISSSSN 177
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALI 240
+ SL+ + ++ + +R T++ + K+ K+++ + +L DV++V+TNA
Sbjct: 178 LSNVLESLKSNSIENINAELTLRAETSVAIDQEMSEKVLKIMDFMDELDDVQEVHTNAEF 237
Query: 241 FD 242
D
Sbjct: 238 PD 239
>gi|374579490|ref|ZP_09652584.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfosporosinus
youngiae DSM 17734]
gi|374415572|gb|EHQ88007.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfosporosinus
youngiae DSM 17734]
Length = 247
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 139/241 (57%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW+NIK KK DA++GKI T++ REL +A + +L++AIE A N+
Sbjct: 1 MSGHSKWSNIKHKKGKADAQKGKIFTKLGRELLIAARACGGDVNDFRLKIAIENAKAQNL 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P NI RAIQK E NY E+RYEGY G AI++D +T+NR RT +R+IF+K
Sbjct: 61 PNENIQRAIQKGAGG--TEGANYEELRYEGYGPGGVAIMIDILTDNRNRTAGEVRHIFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL---ALEKGAEDFLIDKDNKITIITS 177
NGGN+ + G V +MF+ GQL L K T DL ALE GAEDF D+D ++T+
Sbjct: 119 NGGNMGETGCVGWMFEDKGQLRILREGLKLTEDDLMMVALEAGAEDFESDEDG-FVVLTA 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDG-EAIKLQKLLNELKKLHDVKKVYT 236
P ++ +L E S + P I D +A K+ L+N+L+ D++ VY
Sbjct: 178 PQDMEAVRQALIDQAIPIEESVLSPIPQNTIEITDSDQARKIVNLMNKLEDHDDIQGVYA 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|154483677|ref|ZP_02026125.1| hypothetical protein EUBVEN_01381 [Eubacterium ventriosum ATCC
27560]
gi|149735587|gb|EDM51473.1| DNA-binding regulatory protein, YebC/PmpR family [Eubacterium
ventriosum ATCC 27560]
Length = 242
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 144/242 (59%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSK+ANIK KK DA +GK+ T I +E+ VA+ G +P+ N KLR I KA N
Sbjct: 1 MSGHSKFANIKHKKEKNDAAKGKMFTIIGKEIAVAVKEGGADPNNNSKLRDVIAKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I R I+K N INY VRYEGY NG AIIVD +T+NR RT +N+RN F
Sbjct: 61 MPNDTIERGIKKAAGNASA--INYETVRYEGYGPNGIAIIVDALTDNRNRTAANVRNCFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K GGN+ +G V +MF GQ++ + + L+ A++ GAEDF D+++ +IT
Sbjct: 119 KGGGNVGTQGCVAYMFDEKGQIIIDKEECDMDPDELMMTAIDAGAEDFQ-DEEDSYEVIT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVY 235
P++F ++ +LE G + + M P + D EAI K+ +++ L + DV++VY
Sbjct: 178 DPNEFSVVREALEAAGVAMAQAEVTMIPQNYVELTDDEAIKKMNIIIDRLDEDEDVQQVY 237
Query: 236 TN 237
N
Sbjct: 238 HN 239
>gi|428280237|ref|YP_005561972.1| hypothetical protein BSNT_04039 [Bacillus subtilis subsp. natto
BEST195]
gi|291485194|dbj|BAI86269.1| hypothetical protein BSNT_04039 [Bacillus subtilis subsp. natto
BEST195]
Length = 260
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 147/243 (60%), Gaps = 12/243 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K DAKRGKI ++ +E+ VA G +P+ N LRL IEKA AN
Sbjct: 21 MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKEGGADPEANSALRLVIEKAKGAN 80
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K + +Y E+ YEGY +G A++V+C+T+N+ RT SN+R FN
Sbjct: 81 MPNENIDRAIKKAAGG--QDGSSYEEITYEGYGPSGIAVMVECVTDNKNRTASNVRTAFN 138
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNT-----LLDLALEKGAEDFLIDKDNKITI 174
KNGG+L + G V F+F+ G + + T++ +LD+ LE G E+ I+ +N +
Sbjct: 139 KNGGSLGESGCVAFLFERKG-FITIDRTERQIEEDELMLDV-LEAGGEELRIE-ENLYEV 195
Query: 175 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
T P F E+K +LE + + S+ + M P T D KL+ L++ L+ DV++V
Sbjct: 196 FTEPEHFEEVKTALE-SKYLISSAEVTMLPNTYAEADDQAVEKLETLIDVLEDDDDVQEV 254
Query: 235 YTN 237
YTN
Sbjct: 255 YTN 257
>gi|400287534|ref|ZP_10789566.1| hypothetical protein PPAM21_05610 [Psychrobacter sp. PAMC 21119]
Length = 249
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 149/239 (62%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA +GK+ T+I+RE+ A G+ +PD N +LR IEKAL N
Sbjct: 1 MAGHSKWANIKHRKARQDAVKGKVFTKIIREIVSAAKQGDPDPDKNPRLRAVIEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + NEN+ EV YEGY V G A++V+ +T+N RTVS +R+ F
Sbjct: 61 MTRDTINRAVDRGTGGGDNENME--EVSYEGYGVGGVAVLVETMTDNLNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+ GNL GSV ++F G++ F + ++ ++ +AL+ GA D D D+ + +IT
Sbjct: 119 KHEGNLGTSGSVAYLFTKRGEITFNDTSLEDEVMLVALDAGALDIENDGDS-LLVITEWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F ++K++L G ++++ + M P T + +A K+ K+++ L+ + DV++VY+N
Sbjct: 178 TFGQVKDALNAAGLISDNAEVTMSPSTTAEIDNVDDAEKVMKMIDMLEDIDDVQEVYSN 236
>gi|108804157|ref|YP_644094.1| hypothetical protein Rxyl_1318 [Rubrobacter xylanophilus DSM 9941]
gi|118573928|sp|Q1AWE6.1|Y1318_RUBXD RecName: Full=Probable transcriptional regulatory protein Rxyl_1318
gi|108765400|gb|ABG04282.1| protein of unknown function DUF28 [Rubrobacter xylanophilus DSM
9941]
Length = 250
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK +DAKRG + ++ R + VA G +P+ N L LA++KA DAN
Sbjct: 1 MSGHSKWSTIKRKKGAMDAKRGALFAKLSRAITVAAREGGGDPEANPALALAVQKAKDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI + + +E +Y + YEGY+ G A++V+ +T+NR R S+IR IF+
Sbjct: 61 MPNDNIQRAIDRG-TGAGSEAGDYEHITYEGYAPGGVAVMVEVLTDNRNRAASDIRYIFS 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG L GSV ++F+ G +L + + L++ ALE GAED +D D+ + T P
Sbjct: 120 KHGGKLGTSGSVAYLFERKGVVLVPADAVGEEELMEAALEAGAEDVELDGDH-WRVTTEP 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
S+F+ ++ LE G + ES+ + M P + A + +L++ L++ DV++VY N
Sbjct: 179 SEFMAVRQGLEEAGIRYESAQLSMEPMNTVKLDASTARQTLRLIDALEENDDVQEVYAN 237
>gi|427412412|ref|ZP_18902604.1| YebC/PmpR family DNA-binding regulatory protein [Veillonella ratti
ACS-216-V-Col6b]
gi|425716219|gb|EKU79203.1| YebC/PmpR family DNA-binding regulatory protein [Veillonella ratti
ACS-216-V-Col6b]
Length = 244
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 148/242 (61%), Gaps = 9/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA + K+ T+I RE+ VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKTDALKAKVTTKISREITVAARMGGGDPVGNMRLKLALQKARENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K +N Y E+ YEGY G A+ V+C+T+NR RT +++R+ F+
Sbjct: 61 VPKDNIQRAIAKGVGATDMDN--YEEITYEGYGPGGVALTVECLTDNRNRTAADVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK---KNTLLDLALEKGAEDFLIDKDNKITIIT 176
KNGGNL + G V +MF G +F+ +++ + L LALE GAED ++ D+ I T
Sbjct: 119 KNGGNLGETGCVAWMFNRKG--IFVIDSEGHDEEELTMLALEAGAEDLKVE-DDSFVIYT 175
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P + ++ +L + S I M P I + A+K+QK+L+ L L DV+ VY
Sbjct: 176 APEDYDTVEAALADAKIETLVSKITMVPDNTIALEGDNAVKMQKMLDALDDLDDVQDVYH 235
Query: 237 NA 238
NA
Sbjct: 236 NA 237
>gi|206896191|ref|YP_002247236.1| hypothetical protein COPRO5265_0905 [Coprothermobacter
proteolyticus DSM 5265]
gi|226696017|sp|B5Y8Y9.1|Y905_COPPD RecName: Full=Probable transcriptional regulatory protein
COPRO5265_0905
gi|206738808|gb|ACI17886.1| conserved hypothetical protein [Coprothermobacter proteolyticus DSM
5265]
Length = 248
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 150/242 (61%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NIK KK +DA+RGKI T++ REL +A G NPDTN++LR+AI+KA AN
Sbjct: 1 MSGHSKWHNIKAKKSKMDAQRGKIFTKLTRELVIAAREGGPNPDTNLRLRVAIDKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI +AI K N++ + ++E YEGY G AI+V+ T+N+ RT +++R IF+
Sbjct: 61 MPKDNIDKAIAKGAGNLEGQE--FVEALYEGYGPGGVAILVEVTTDNKNRTAADVRRIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK---GAEDFLIDKDNKITIIT 176
++GG L++ G+V + F+ G ++ L + ++ +L LE G +D L ++D+ +TI T
Sbjct: 119 RHGGTLAESGAVSWQFERKG-VIELNKEQVPSIDELTLELIDFGVDDVL-EEDDSVTIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P ++ + L G + + + P I + E K+ +L EL DV++VYT
Sbjct: 177 QPDALSKVLDHLNEVGIEVSRAELEFIPKNYISVSEEEGRKILSMLEELDDNDDVQEVYT 236
Query: 237 NA 238
NA
Sbjct: 237 NA 238
>gi|441500313|ref|ZP_20982477.1| hypothetical protein C900_05160 [Fulvivirga imtechensis AK7]
gi|441435926|gb|ELR69306.1| hypothetical protein C900_05160 [Fulvivirga imtechensis AK7]
Length = 247
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 149/241 (61%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K DAKRG+I T++++E+ VA G +P+ N +LRLAI+ A N
Sbjct: 1 MAGHSKWANIKRRKGAQDAKRGQIFTKLIKEITVAAREGGPDPEGNPRLRLAIQNAKGQN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI K + + + ++YIE YEGY +G A+ V+C T+N RTV+++R++F+
Sbjct: 61 VPKDNIERAINKGSGS---DAVDYIETTYEGYGPHGVAVFVECATDNLNRTVASVRSLFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALE---KGAEDFLIDKDNKITIIT 176
K GG+L GSV +MF+ G L + N + + DL LE GAE+ + + + +
Sbjct: 118 KYGGSLGVNGSVDYMFERKGTFLIVQNEETDQ-DDLTLELIDGGAEEVEFN-EGYVEVTC 175
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+ F +++ L+ +AE++ + P T + D + K+ KL+ L+ DV+KVY
Sbjct: 176 AMEDFGNMQHKLDELSLEAETAELQRIPTTTVALDDEQFDKVMKLIEALEDDDDVQKVYH 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|313884405|ref|ZP_07818166.1| DNA-binding regulatory protein, YebC/PmpR family [Eremococcus
coleocola ACS-139-V-Col8]
gi|312620189|gb|EFR31617.1| DNA-binding regulatory protein, YebC/PmpR family [Eremococcus
coleocola ACS-139-V-Col8]
Length = 244
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 145/243 (59%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DA++G + ++ +E+ +A N G +P N LR+ ++KA N
Sbjct: 4 MSGHNKWSKIKNKKGAEDARKGAVFGKLSKEIFMAAKNGGGDPSMNSTLRMVLDKAKAEN 63
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + NY E+ YEGY G AI+V +T+N+ RT + I F+
Sbjct: 64 MPKDNITRAIKK--ATDAGDMTNYDEITYEGYGSGGIAILVHTLTDNKNRTDTGIHVAFS 121
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGGNL GSV +MF G ++ ++T+ +LA+E GAED + D I T
Sbjct: 122 RNGGNLGTSGSVAYMFDRKGYVVLDREELEVDEDTIFELAIEAGAEDVQV-SDEAFEIYT 180
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVY 235
PS F +K +LE G++ + + M P I DGE + KL+KL++ L+ DV++VY
Sbjct: 181 DPSDFAAVKEALEAAGYEFARAELTMVPQNTIAI-DGEKLEKLEKLVDALEDDDDVQQVY 239
Query: 236 TNA 238
TNA
Sbjct: 240 TNA 242
>gi|17231768|ref|NP_488316.1| hypothetical protein all4276 [Nostoc sp. PCC 7120]
gi|33517074|sp|Q8YPC2.1|Y4276_NOSS1 RecName: Full=Probable transcriptional regulatory protein all4276
gi|17133411|dbj|BAB75975.1| all4276 [Nostoc sp. PCC 7120]
Length = 252
Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 2/239 (0%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K +VDAK+GK T++ R + +A G +P N +LR AI+KA A
Sbjct: 1 MAGHSKWANIKRQKAVVDAKKGKTFTQLSRAIILAARSGVPDPSGNFQLRTAIDKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K +N + E+RYEGY G AI+++ +T+NR RT +++R F+
Sbjct: 61 IPNDNIERAIAKGAGTFGGDNASLEEIRYEGYGPGGVAILIEALTDNRNRTAADLRVAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KNGGNL + G V +MF G + ++ LL+ +LE GAE + + +D + T +
Sbjct: 121 KNGGNLGETGCVSWMFDQKGVCVVSGVVDEDQLLEASLEGGAESYEMTEDETAEVFTEVA 180
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNI-VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ +L+ GFK + + P ++ V + +A L KL++ L+ L DV+ V +N
Sbjct: 181 NLEILNQTLKDQGFKVTDAELRWIPSNHLEVTEPDQARSLLKLIDTLEGLDDVQNVTSN 239
>gi|330717916|ref|ZP_08312516.1| hypothetical protein LfalK3_00115 [Leuconostoc fallax KCTC 3537]
Length = 241
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 136/246 (55%), Gaps = 14/246 (5%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ +L VA G +P+ N LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + EV YEGY G A++V+ T+N RTVS +RN F
Sbjct: 61 MPKDNIQRALDKASGA---GGAKFEEVTYEGYGPAGVAVLVEASTDNINRTVSTVRNSFK 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
GG+L GSV F F G L P ++T+L+ ALE GAED D I
Sbjct: 118 HYGGSLGTSGSVAFQFDRKGYLAIDRTAFPELDEDTILEAALEAGAEDVQT-SDEAFEIY 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVM---RPYTNIVFKDGEAIKLQKLLNELKKLHDVK 232
T P F I+++L G+ E S + M P T++ D E KL KL++EL+ DV
Sbjct: 177 TEPGDFQSIESALTEAGYSFEESEVTMIAQNPMTDLSDDDQE--KLDKLVDELEDNEDVL 234
Query: 233 KVYTNA 238
VYT A
Sbjct: 235 AVYTTA 240
>gi|330864237|emb|CBX74291.1| UPF0082 protein YE2395 [Yersinia enterocolitica W22703]
Length = 219
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 133/214 (62%), Gaps = 5/214 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN K +K DAKRGKI T+I+REL A G +P N +LR AI+KAL N
Sbjct: 1 MAGHSKWANTKHRKAAQDAKRGKIFTKIIRELVTAARLGGGDPGANPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + ++ N+ I YEGY G A++V+C+++NR RTVS +R+ F
Sbjct: 61 MTRDTLNRAIARGVGGDEDNNMETI--IYEGYGPGGTAVMVECLSDNRNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + + P +++ ++D ALE GA+D ++ D I + T+
Sbjct: 119 KTGGNLGTDGSVSYLFTKKGVISYAPGLEEDAVMDAALEAGADDIVVYDDGAIDVFTAWE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVM--RPYTNIVFK 211
+K++L+ TG AE + ++ +P N++ K
Sbjct: 179 SLGAVKDALDATGLVAEGAESLLFHQPKPNLMQK 212
>gi|317051311|ref|YP_004112427.1| hypothetical protein Selin_1136 [Desulfurispirillum indicum S5]
gi|316946395|gb|ADU65871.1| protein of unknown function DUF28 [Desulfurispirillum indicum S5]
Length = 249
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 149/244 (61%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKWANI+ +K DAKRGKI T++ +E+ +A G +PD N LRLA++KA N+
Sbjct: 1 MAGHSKWANIRHRKGAQDAKRGKIFTKVAKEIAIAARNGADPDMNPALRLALQKAKGVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +N+ RAI++ + + NY + YEGY+ G A++V+ +T+N+ RTV+ +R+IF+K
Sbjct: 61 PNDNVQRAIKRGIGGMDGD--NYESITYEGYAPGGIAVMVESLTDNKNRTVAEVRHIFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
GG+L + G V ++F G + + ++ ++ +AL+ GAED + D II +
Sbjct: 119 RGGSLGESGCVGYLFSRKGVITVNAESASEDDVMLVALDAGAED-VKSGDGMFEIIAAAE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNA 238
F+ +++++E G E++ + M P T I +D + A ++ L+ L+ DV+ VY N
Sbjct: 178 DFMAVRDAMEEAGIPIETAEMNMVPATTITVEDEKIATQVLSLMEALEDCDDVQNVYMNF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIDD 241
>gi|167629894|ref|YP_001680393.1| hypothetical protein HM1_1824 [Heliobacterium modesticaldum Ice1]
gi|226695946|sp|B0TF65.1|Y1757_HELMI RecName: Full=Probable transcriptional regulatory protein
Helmi_17570
gi|167592634|gb|ABZ84382.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 255
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 150/246 (60%), Gaps = 12/246 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K VDA++GKI T+I REL VA G +P++N +L++AI+KA + N
Sbjct: 1 MAGHSKWANIKHRKAKVDAQKGKIFTKIGRELIVAARQGGPDPNSNFRLKIAIQKAKENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAIQ+ E NY E+ YEGY G AI+++ +T+NR RT IR++F+
Sbjct: 61 MPNDNIQRAIQRGAGG--TEGANYEELTYEGYGPGGVAIMIEAMTDNRNRTAGEIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCG--QLLFLPNT-----KKNTLLDLALEKGAEDFLIDKDNKI 172
K+GGNL + G V ++F+ G +L P ++ L+ +ALE GA D +++D +
Sbjct: 119 KSGGNLGETGCVSWIFEPKGVIRLAVTPEAGAKVVDEDELMLVALETGALDIAVEED-EA 177
Query: 173 TIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDV 231
+ T P + ++ +L G+ S+ + + P + D + A KL KL++ L++ DV
Sbjct: 178 EVFTLPEELEGVRQALADAGYAVLSAEVTLVPKNTMEVTDKDIATKLIKLMDALEEHDDV 237
Query: 232 KKVYTN 237
+ Y N
Sbjct: 238 QNAYAN 243
>gi|320352801|ref|YP_004194140.1| hypothetical protein Despr_0673 [Desulfobulbus propionicus DSM
2032]
gi|320121303|gb|ADW16849.1| protein of unknown function DUF28 [Desulfobulbus propionicus DSM
2032]
Length = 249
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 150/245 (61%), Gaps = 6/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK DAKRGKI T++++E+ +A G +P+ N +LR AI A N
Sbjct: 1 MSGHSKWSTIKRKKGANDAKRGKIFTKLIKEITIAAKMGGGDPEGNPRLRSAITVAKSEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI+K ++ Y E+ YEGY G A++V+ +T+N+ RTV++IR+ F
Sbjct: 61 MPKENIDRAIKKGTGDLGG--AVYEEILYEGYGPGGVAVLVETMTDNKNRTVADIRHFFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + G V +MF G + + + L+D+ALE GAED ++++++ IIT+P
Sbjct: 119 KSGGNLGESGCVAWMFDKKGTISVDKAGVNEEQLMDVALEAGAED-VVEEEDSFQIITAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNI-VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++ + LE K + + M P I V ++ A L +LL+ L+ DV+KV+ N
Sbjct: 178 ESFNDVVDQLEKGKIKFAEATLSMVPKNTIEVTEEKAARSLLRLLDNLEDHDDVQKVHAN 237
Query: 238 ALIFD 242
I D
Sbjct: 238 FDITD 242
>gi|259416989|ref|ZP_05740909.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259348428|gb|EEW60205.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 246
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 148/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K + NY E+RYEGY NG A+IV+ +T+N+ RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKATGG---DAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++ + +T++ A+E GAED +D + I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGEVTYPAEVGDADTVMMAAIEAGAEDVESSEDGHV-IFCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE ++ES+ ++ +P T KL KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSNALEGELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|386714943|ref|YP_006181266.1| hypothetical protein HBHAL_3647 [Halobacillus halophilus DSM 2266]
gi|384074499|emb|CCG45992.1| UPF0082 family protein [Halobacillus halophilus DSM 2266]
Length = 250
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 142/241 (58%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW+NIKR+K DAKRGK+ ++ RE+ +A G +P+ N LRLA++KA N
Sbjct: 1 MAGHSKWSNIKRRKGAQDAKRGKLFMKLAREIFMAARQGGGDPEMNPNLRLAVDKAKSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI+K ++ E +NY E YEGY G A++V +T+N+ RT +++R+ FN
Sbjct: 61 MPNENIDRAIKKATGDL--EGVNYEEYTYEGYGPGGVAVMVKVLTDNKNRTAADVRHAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF---LPNTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
KN GNL + G V FMF G L+ + L+ A+E GAE+ +D + I
Sbjct: 119 KNDGNLGENGCVSFMFDRKGYLVVDRGETEADEEELMLEAIEAGAEEMETTED-QFEIYA 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F ++K +LE +G+ +S + M P T + K+ KL++ L+ DV++VY
Sbjct: 178 EPESFSDVKAALEKSGYSFVTSEVTMIPETYTPLDEEGVEKMLKLIDMLEDNDDVQEVYH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|206602808|gb|EDZ39289.1| Conserved protein of unknown function [Leptospirillum sp. Group II
'5-way CG']
Length = 252
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 145/244 (59%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA K KK I+DAKRGK TR+ +E+ VA G +P+ N +LR A+ KA + N
Sbjct: 1 MSGHSKWATTKHKKAIIDAKRGKAFTRLAKEITVAARIGGGDPEGNPRLRTAMLKAREEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI +AIQ+ I +Y E ++EG+ G A+++ T+N+ RTV +R IF+
Sbjct: 61 MPMDNIKKAIQRGTGEIPG--AHYEECQFEGHGPKGVAVMLKVQTDNKNRTVPELRTIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + G V +MF G + L P ++ ++LALE GA++F + +N I +ITSP
Sbjct: 119 KNGGNLGENGCVSWMFDQKGMISLEWPGATEDKAMELALETGADEFRL-HENGIDLITSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F + S++ + I M P T + +A + +L+ L++ DV+ V++N
Sbjct: 178 ADFPTVLESVKSRKLVPNFAEITMIPQTTVPLDGKDAQMMVRLMEALEEHDDVENVWSNF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|126739230|ref|ZP_01754924.1| hypothetical protein RSK20926_22559 [Roseobacter sp. SK209-2-6]
gi|126719847|gb|EBA16555.1| hypothetical protein RSK20926_22559 [Roseobacter sp. SK209-2-6]
Length = 246
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLAKEITVAAKMGDPDPEKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K I + NY E+RYEGY +G A+IV+ +T+N+ RT S +R+ F+
Sbjct: 61 VPKDVIERAIKKA---IGGDAENYDEIRYEGYGPSGVAVIVETMTDNKNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + + +T++ A+E GAED D I I
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVSYPASVGDADTVMMAAIEAGAEDVESSDDGHI-IYCED 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE ++ES+ ++ +P T KL KL++ L+ DV++V TN
Sbjct: 177 TDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|384135947|ref|YP_005518661.1| hypothetical protein TC41_2236 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290032|gb|AEJ44142.1| protein of unknown function DUF28 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 249
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 147/240 (61%), Gaps = 7/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMREL-RVAINFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+R+K DA RG++ T++ +++ + A G NP+TN +LR+AIE+A N
Sbjct: 3 MAGHSKWHNIQRRKGKQDAIRGQLFTKLSKDIYQAAREGGGNPETNFRLRVAIERARANN 62
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI R I K I E Y E+ YEGY +G A++++ +T+NR RT + +R++F
Sbjct: 63 LPMENIQRTIAKATGQI--EGATYEELLYEGYGPHGVALLLEILTDNRNRTAAEVRHLFR 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL++ G+V +MF+ G+++ +P K + L+ +ALE GAED +I++ + T+
Sbjct: 121 KHGGNLAESGAVAWMFQRFGEIV-VPKYKVDGDDLMMVALEAGAED-VIERSRTYVVKTT 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++ SLE G E + + T + + ++ L+ L+ L DV+ VYTN
Sbjct: 179 PDNFRAVRMSLEEKGIPYEEASLTYEASTKMDLPEEALEQVYDLVEALESLDDVQTVYTN 238
>gi|420157930|ref|ZP_14664754.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
MSTE9]
gi|394755277|gb|EJF38524.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium sp.
MSTE9]
Length = 246
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 141/241 (58%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPD--TNIKLRLAIEKALDA 58
M+GHSKW+ IKRKK +D + KI T+I REL VA+ G PD +N KL+ I KA A
Sbjct: 1 MSGHSKWSTIKRKKEKIDGAKAKIFTKIGRELAVAVKEGGGPDPRSNSKLKDCIAKAKAA 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+P +NI R I+K + + Y + YEGY NG A+IV+ +T+NR RT +++R+ F
Sbjct: 61 NVPNDNIERIIKKAAGD--GDGTKYESIVYEGYGPNGVAVIVEALTDNRNRTAADVRHYF 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
+K GGNL G V F+F G L+ ++T++ LE GA DF D D+ I T
Sbjct: 119 DKFGGNLGTSGCVSFLFSQKGVLVIEREGLSEDTVMTDCLEAGAADFQAD-DDVFEIYTE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAI-KLQKLLNELKKLHDVKKVYT 236
P F + + LE G++ S+ + M P T D ++I K+QKLL+ L+ DV+ V+
Sbjct: 178 PDDFSAVLSDLEGKGYEFVSAEVEMVPTTYTALNDPDSITKMQKLLDNLEDNDDVQNVWH 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|239618298|ref|YP_002941620.1| hypothetical protein Kole_1935 [Kosmotoga olearia TBF 19.5.1]
gi|259646525|sp|C5CGU7.1|Y1935_KOSOT RecName: Full=Probable transcriptional regulatory protein Kole_1935
gi|239507129|gb|ACR80616.1| protein of unknown function DUF28 [Kosmotoga olearia TBF 19.5.1]
Length = 252
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 156/241 (64%), Gaps = 9/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K+ DAK+ KI T+I+REL VA G +P+TN LR AIE+A AN
Sbjct: 1 MSGHNKWANIKHRKMAQDAKKSKIFTKIIRELMVAAREGGTDPNTNNALRAAIERAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ + +AI+K + E +++E YE Y+ G A+++ +T+N+ RT IR++ +
Sbjct: 61 MPKDTMEKAIKKGAGEL--EGQSFVEALYEVYAPGGVAMLIRALTDNKNRTAQEIRHLLS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLD---LALEKGAEDFLIDKDNKITIIT 176
K+GGN+++ GSV +MF+ G ++ +P ++ + + + LA++ GAED + D+++ + IIT
Sbjct: 119 KHGGNMAESGSVAWMFERKG-VITVPRSEISDMDEFQLLAIDAGAED-IQDEEDPVRIIT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
+P + +KN+LE G+ A S + P + +A KL KLLN L+ DV++VY
Sbjct: 177 APEEASNVKNALEENGYTA-SYELTYIPKNTVSVSGNDAEKLLKLLNVLEDNDDVQEVYA 235
Query: 237 N 237
N
Sbjct: 236 N 236
>gi|374708717|ref|ZP_09713151.1| hypothetical protein SinuC_00760 [Sporolactobacillus inulinus CASD]
Length = 243
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 149/241 (61%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK VDA RGKI R+ +++ + A + G +P N LR AIEKA AN
Sbjct: 1 MSGHSKWNNIQHKKNAVDAARGKIFMRLSKDIFLEARHGGGDPSMNSGLRHAIEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K ++ + + Y E+ YEGY G A++VD +T+NR R+ S+IR+ F
Sbjct: 61 MPNDNISRAIKKATGDL--DGVTYEEITYEGYGPGGVAVMVDVLTDNRNRSASDIRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL + GSV F+F G + N + ++T++ A++ GAED +D++ IIT+
Sbjct: 119 KSGGNLGESGSVGFLFDKQGIIEIEKNDELDEDTMMMDAIDAGAEDMKT-EDDRFIIITT 177
Query: 178 PSKFIEIKNSL-EMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F +++ +L E G++ + + + M P T + K++ L+ L+ DV+ +YT
Sbjct: 178 PDVFEDVRKALSEDKGYEVDRAEVAMIPTTKTALTGKDLEKMRTLIEVLEDNDDVQDIYT 237
Query: 237 N 237
N
Sbjct: 238 N 238
>gi|331084959|ref|ZP_08334046.1| hypothetical protein HMPREF0987_00349 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408659|gb|EGG88124.1| hypothetical protein HMPREF0987_00349 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 243
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 144/243 (59%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT--NIKLRLAIEKALDA 58
M+GHSK+ANIK KK DA +GKI T+I REL VA+ G PD N +LR I KA
Sbjct: 1 MSGHSKFANIKHKKEKNDAAKGKIFTKIGRELAVAVKEGGGPDPANNSRLRDVIAKAKAN 60
Query: 59 NIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
N+P +NI R+I+K +N Y + YEGY NG AIIV +T+N+ RT SN+RN F
Sbjct: 61 NMPNDNIDRSIKKAAGEGSADN--YEHITYEGYGPNGTAIIVKALTDNKNRTASNVRNAF 118
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITII 175
K GN+ G V FMF GQ++ + + L+ LAL+ GAEDF +++++ ++
Sbjct: 119 TKGSGNVGTPGCVSFMFDEKGQIIIAKEDCDMDSDELMMLALDAGAEDF-VEEEDSYEVL 177
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKV 234
T P F E++ LE G ++ + M P T + D + +K +QK L+ L++ DV++V
Sbjct: 178 TVPEDFSEVRLKLEEAGIPMANAEVTMIPQTWVELTDEQDLKNIQKTLDLLEEDDDVQEV 237
Query: 235 YTN 237
Y N
Sbjct: 238 YHN 240
>gi|404328503|ref|ZP_10968951.1| hypothetical protein SvinD2_00350 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 241
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 144/240 (60%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK +DA RGKI ++ +++ + A + G +PD N LR AIEKA AN
Sbjct: 1 MSGHSKWNNIQHKKNAMDAIRGKIFMKLSKDIFLEARHGGGDPDMNAGLRHAIEKAKSAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K ++ + + Y E+ YEGY G A++VD +T+NR R+ S IR+ F
Sbjct: 61 MPNDNISRAIKKATGDL--DGVTYDEITYEGYGPGGVAVMVDVLTDNRNRSASEIRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCG--QLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K+GGNL + GSV FMF G ++ ++ ++ A++ GA+D +D + I T
Sbjct: 119 KSGGNLGESGSVAFMFDKQGLIEIEKKDGLDEDQVMMDAIDAGADDLRTGED-RFIITTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F +K++LE G++ + + M P T + K++ L++ L+ DV+ VY+N
Sbjct: 178 PDSFDAVKDALEKKGYEIDRGEVAMVPKTKTSLSGDDLEKMENLMDTLENNDDVQDVYSN 237
>gi|424869358|ref|ZP_18293065.1| uncharacterized protein [Leptospirillum sp. Group II 'C75']
gi|124514306|gb|EAY55820.1| conserved protein of unknown function [Leptospirillum rubarum]
gi|387220741|gb|EIJ75385.1| uncharacterized protein [Leptospirillum sp. Group II 'C75']
Length = 252
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 146/244 (59%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA K KK I+DAKRGK TR+ +E+ VA G +P+ N +LR A+ KA + N
Sbjct: 1 MSGHSKWATTKHKKAIIDAKRGKAFTRLAKEITVAARIGGGDPEGNPRLRTAMLKAREEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI +AIQ+ I +Y E ++EG+ G A+++ T+N+ RTV +R IF+
Sbjct: 61 MPMDNIKKAIQRGTGEIPG--AHYEECQFEGHGPKGVAVMLKVQTDNKNRTVPELRTIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + G V +MF G + L P ++ ++LALE GA++F + +N I +ITSP
Sbjct: 119 KNGGNLGENGCVSWMFDQKGMISLEWPGATEDKAMELALETGADEFRL-HENGIDLITSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ F + S++ + I M P T++ +A + +L+ L++ DV+ V++N
Sbjct: 178 ADFSTVLESVKSRKLVPTFAEITMIPQTSVHLDGKDAQMMVRLMEALEEHDDVENVWSNF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|194335779|ref|YP_002017573.1| hypothetical protein Ppha_0657 [Pelodictyon phaeoclathratiforme
BU-1]
gi|226707997|sp|B4SDW5.1|Y657_PELPB RecName: Full=Probable transcriptional regulatory protein Ppha_0657
gi|194308256|gb|ACF42956.1| protein of unknown function DUF28 [Pelodictyon phaeoclathratiforme
BU-1]
Length = 250
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 147/240 (61%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IKRKK + D KRG + T++++E+ +A G +P N +LRLAI+ A D +
Sbjct: 1 MSGHSKWATIKRKKAVTDQKRGSLFTKLVKEITIAAKMGGGDPAGNPRLRLAIDTARDNS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + E + + E+ YEGY G A+I++ T+NR RTV++IR+I +
Sbjct: 61 MPMDNIQRAIKKGTGEL--EGVTWDEITYEGYGPAGIALIIETATDNRNRTVADIRHIMS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK--KNTLLDLALEKGAEDFLIDKDNKITIITS 177
+N G+L + GSV +MF+ G L +P + ++ L++L LE G ED D +N T+IT
Sbjct: 119 RNNGSLGESGSVAWMFQRKGT-LDVPRSAAGEDQLMELLLEAGLEDLGSDDENYFTVITD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+K +L+ E++ I + P I + +A K+ KL++ + DV+ VYTN
Sbjct: 178 VKDLERVKKALDDAAIMYENAKIDLIPENYIELEAEDARKVIKLIDAFENNDDVQAVYTN 237
>gi|37522076|ref|NP_925453.1| hypothetical protein glr2507 [Gloeobacter violaceus PCC 7421]
gi|49037281|sp|Q7NHM8.1|Y2507_GLOVI RecName: Full=Probable transcriptional regulatory protein glr2507
gi|35213075|dbj|BAC90448.1| glr2507 [Gloeobacter violaceus PCC 7421]
Length = 251
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 148/245 (60%), Gaps = 5/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWA IKR+K D +G + R+ RE+ VA G +P N +LRLAIE+A A+
Sbjct: 1 MAGHSKWAQIKRQKAKNDVAKGAMFARLSREIIVATRLGGPDPAGNFRLRLAIEQAKAAS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI K + I+ +N + E+RYEGY G AI+++ T+NR RTV+++R +F+
Sbjct: 61 LPGENIQRAIDKGSGAIEGDN--FEEIRYEGYGPAGVAILIEAQTDNRNRTVADLRAVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
+NGGNL + G V +MF+ G + ++ L++ AL+ GA + ID + +T +
Sbjct: 119 RNGGNLGETGCVGWMFQQRGVAVLEGPVREEELIEAALDGGALGYEIDPQGQGVEVTCEA 178
Query: 180 KFIE-IKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
+E + ++L+ GF+ ++ + P NI D + A ++ LL +L+ L DV++V N
Sbjct: 179 ADLEALTDALKGAGFRLAAAEVRWVPDNNIELADPDVARQVLTLLEKLESLDDVQRVSAN 238
Query: 238 ALIFD 242
L+ D
Sbjct: 239 HLVED 243
>gi|254475462|ref|ZP_05088848.1| conserved hypothetical protein TIGR01033 [Ruegeria sp. R11]
gi|214029705|gb|EEB70540.1| conserved hypothetical protein TIGR01033 [Ruegeria sp. R11]
Length = 246
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 149/239 (62%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPEKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K+ + +Y E+RYEGY NG A+IV+ +T+N+ RT S +R+ F+
Sbjct: 61 VPKDVIDRAIKKSQGG---DAESYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + + +T++ A+E GAED ++ + I +
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVTYPASVGDADTVMMAAIEAGAEDVESSEEGHL-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ E+ N+LE ++ES+ +V +P T KL KL++ L+ DV++V TN
Sbjct: 177 TDLHEVSNALEAELGESESTKLVWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|306490809|gb|ADM94930.1| hypothetical protein [uncultured candidate division JS1 bacterium]
Length = 249
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 139/238 (58%), Gaps = 4/238 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW+ IKRKK DA+RGK+ +I R + VA G +P+TN++LR AI+ A + N+
Sbjct: 1 MSGHSKWSTIKRKKGKADAERGKLFGKINRLISVAARNGADPETNVELRNAIQVARENNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P NI RAI++ I E ++Y EV YEGY G A++V +T+NR RTVS IR IF+K
Sbjct: 61 PNENIERAIKRGTGEI--EGVSYEEVIYEGYGPGGVAVLVKALTDNRNRTVSEIRKIFSK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
+GGNL G V ++F F ++ +LDLALE ED ID+ N I + PS
Sbjct: 119 HGGNLGSTGCVAWLFSQKAYFAFDRKKVDQDKILDLALEVEVEDIEIDEKN-IEVTLPPS 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F + K L + + I M P T I + +A ++ L+ +L+ DV+ VY N
Sbjct: 178 DFEKFKQLLAENQIEYTVAEITMIPQTTIDLEGKKAEQMLNLMEQLEDQDDVQNVYAN 235
>gi|218439724|ref|YP_002378053.1| hypothetical protein PCC7424_2775 [Cyanothece sp. PCC 7424]
gi|226701513|sp|B7K8I7.1|Y2775_CYAP7 RecName: Full=Probable transcriptional regulatory protein
PCC7424_2775
gi|218172452|gb|ACK71185.1| protein of unknown function DUF28 [Cyanothece sp. PCC 7424]
Length = 255
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 141/242 (58%), Gaps = 5/242 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDAK+GK T++ R + VA G +P N++LR AIEKA A
Sbjct: 1 MAGHSKWANIKRQKARVDAKKGKTFTQLSRAIIVAARNGLPDPAANLQLRTAIEKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K N+ N E+RYEGY G AI+++ +T+NR RT +++R F+
Sbjct: 61 IPNDNIERAIAKGAGTYGNDENNLEEIRYEGYGPGGVAILIEALTDNRNRTAADLRAAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI---DKDNKITIIT 176
KNGGNL + G V +MF G ++ ++ LLD ++E GA+ + I D++ + T
Sbjct: 121 KNGGNLGETGCVSWMFDQKGVVILEGKVEEEVLLDASVEGGADTYEIFDSDEEQGAEVFT 180
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVY 235
S + +L+ G + + + P +I D E + L KL++ L+ L DV+ V
Sbjct: 181 EVSNLETLNQTLQEKGLPVKEAELRWIPNNSIEVTDPEQGRSLLKLMDALESLDDVQNVT 240
Query: 236 TN 237
N
Sbjct: 241 AN 242
>gi|378773866|ref|YP_005176109.1| hypothetical protein Pmu_01880 [Pasteurella multocida 36950]
gi|356596414|gb|AET15140.1| hypothetical protein Pmu_01880 [Pasteurella multocida 36950]
Length = 246
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 146/244 (59%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G + + N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVNANPRLRTAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ +++ A+E GA+D + +D + T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILITSGDEDVIMEAAIEAGADDVQVQEDGSFEVYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ +++ +E G +++ + M P T + A KL KL++ L+ DV+ VY N
Sbjct: 177 EELGAVRDGIESAGINIDNAEVTMIPSTTVELDAETAPKLLKLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|406962504|gb|EKD88838.1| hypothetical protein ACD_34C00308G0003 [uncultured bacterium]
Length = 251
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 144/244 (59%), Gaps = 4/244 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IKRKK DAKRG++ TR+ RE+ + A G +PD+N +LRLAI+KA +
Sbjct: 1 MSGHSKWATIKRKKGATDAKRGQVFTRLTREIVMSAREGGADPDSNFRLRLAIDKARAQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+++ K I Y EV YEGY+ NG A+I++C+T NR RTV+ IR++
Sbjct: 61 MPKDNIDRALKRAAGEGKEGEI-YEEVSYEGYAPNGIAVIIECVTENRNRTVAEIRHLLT 119
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK-NTLLDLALEKGAEDFLIDKDNKITIITSP 178
++GGN+ + GSV + FK F + + +LA+E GA+D D D +I +I
Sbjct: 120 RSGGNMGELGSVGWQFKRAATYSFDSSKYDFEKVFELAVEGGADDVNED-DGEINVIAPV 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F + + +G+ M P + + +++ + + L++L DV+ VY+N
Sbjct: 179 EAFKTLSDRFRAANMMPTDAGLSMIPTNEMELSVEDTLQVVRTIENLEELDDVQNVYSNL 238
Query: 239 LIFD 242
I D
Sbjct: 239 KISD 242
>gi|334881995|emb|CCB82940.1| UPF0082 protein lp_2253 [Lactobacillus pentosus MP-10]
gi|339639197|emb|CCC18428.1| UPF0082 protein lp_2253 [Lactobacillus pentosus IG1]
Length = 242
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 144/242 (59%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGK+ +I REL +A+ G +PD+N +LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + NY EV YEGY G A++V +T+N+ RT + +R+ F
Sbjct: 61 MPKDNIKRAVDKGSGSGAE---NYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+GG L+ G+V +MF G ++ +T ++T+L L+ G +D L D I T
Sbjct: 118 HHGGALAATGAVSYMFDRKGYIVISREDLDTDEDTMLMDVLDAGGDD-LQSSDEAFEIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P + ++++LE +G+K E++ + M P + KLQ +++EL+ DV +VY
Sbjct: 177 DPKQLAAVRDALEASGYKLETAELTMIPENLTDVPADKVEKLQHMIDELEDNDDVSEVYE 236
Query: 237 NA 238
A
Sbjct: 237 AA 238
>gi|421186767|ref|ZP_15644149.1| hypothetical protein AWRIB418_1364 [Oenococcus oeni AWRIB418]
gi|399965571|gb|EJO00143.1| hypothetical protein AWRIB418_1364 [Oenococcus oeni AWRIB418]
Length = 240
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 137/243 (56%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI +I +L VA G +P N LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKISHDLYVAAKAGGADPSANASLRLVMDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RA+ K ++ + E YEGY+ G A++V+ T+N RTVSN+RN FN
Sbjct: 61 MPKDNVQRALDKATGA---GDVKFEEATYEGYAPGGIAVLVETSTDNINRTVSNVRNSFN 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+GG+L GSV F F G + PN ++ +++ A+E GAED D+ I
Sbjct: 118 HHGGSLGTSGSVSFQFDRRGHFVIDRRSHPNITEDQVMEDAIEAGAEDVQT-SDDAFEIF 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
+ P+ F ++ +L G+ S I M P + + + K +KL++EL+ DV VY
Sbjct: 177 SQPADFAAVEGALTDKGYDLAESEITMIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVY 236
Query: 236 TNA 238
T A
Sbjct: 237 TTA 239
>gi|300087333|ref|YP_003757855.1| hypothetical protein Dehly_0207 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527066|gb|ADJ25534.1| protein of unknown function DUF28 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 250
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 147/244 (60%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IK +K DAKRG++ T++ RE+ + A + G +P N +LRLA++KA DA
Sbjct: 1 MSGHSKWATIKHQKGAADAKRGQLFTKLSREIILSAKDGGPDPAMNARLRLAVQKARDAR 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + ++ E + E+ EGY G AI+V +++NR RT+ +R++F
Sbjct: 61 MPSDNIERAIKKGSGQLEGETL--FELTLEGYGPGGVAILVQAVSDNRNRTIQEVRHLFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GG + + G V ++F G + + N + + ++ GAED D D + +IT+P
Sbjct: 119 KSGGAMGEAGCVAWIFDPKGIVNVNAENRDTDEVTLEVIDAGAEDVKADGDY-LEVITAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ ++ ++E E+SG+ M+P T + D A+++ KLL L+ L D + VY+NA
Sbjct: 178 EQLEAVRQAVEAKAIPIENSGLEMKPKTLVELDDDTAVQVLKLLTALEDLDDAQNVYSNA 237
Query: 239 LIFD 242
D
Sbjct: 238 DFSD 241
>gi|417840041|ref|ZP_12486197.1| UPF0082 protein [Haemophilus haemolyticus M19107]
gi|341950508|gb|EGT77096.1| UPF0082 protein [Haemophilus haemolyticus M19107]
Length = 246
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 139/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDT-NIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G T N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVTANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIEQADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|284048865|ref|YP_003399204.1| hypothetical protein Acfer_1531 [Acidaminococcus fermentans DSM
20731]
gi|283953086|gb|ADB47889.1| protein of unknown function DUF28 [Acidaminococcus fermentans DSM
20731]
Length = 243
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 143/241 (59%), Gaps = 7/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA RGKI T+I RE+ +A+ G +P N++L+LA+ KA N
Sbjct: 1 MSGHSKWANIKFKKGKADALRGKITTKIGREITIAVRMGGPDPTGNMRLKLALSKAKANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IPK+NI RAI K E NY ++ YEGY G AI+V +T+NR RT +++R++F+
Sbjct: 61 IPKDNIKRAIAKGQG--ATEGSNYEQITYEGYGPAGVAIMVSALTDNRNRTAADVRHVFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN--TKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGN+ + G V +MFK+ G ++ +L++AL+ GAED D+ I TS
Sbjct: 119 K-GGNMGESGCVGWMFKNKGVFTVEKEGAPSEDEVLEVALDAGAEDMET-TDDAYVITTS 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + ++ +L + S + + P I +A K+Q +++ +L DV+ VYTN
Sbjct: 177 PEDYDAVEKALADHNIEVAMSELSLIPDNTIAVAGEDAEKVQNMIDAFNELDDVQDVYTN 236
Query: 238 A 238
A
Sbjct: 237 A 237
>gi|407473505|ref|YP_006787905.1| YebC/PmpR family DNA-binding regulatory protein [Clostridium
acidurici 9a]
gi|407050013|gb|AFS78058.1| DNA-binding regulatory protein, YebC/PmpR family [Clostridium
acidurici 9a]
Length = 247
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 148/246 (60%), Gaps = 7/246 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NIK KK +DA+RGK+ T++ R + VA G++P+ N L+ AIEKA N
Sbjct: 1 MAGHSKWNNIKNKKGKMDAQRGKMFTKLGRYITVAAREGGDDPEYNAALKSAIEKAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K ++ E NY E+ YEGY +G A+ VDC+T+NR RT S++R+ F+
Sbjct: 61 MPNDNIERAIKKGTGDL--EGANYEEITYEGYGPSGVAVFVDCLTDNRNRTASDVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF--LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
K GGNL G V +MF G L+ + + L+ ++E GAEDF +D+ I+TS
Sbjct: 119 KFGGNLGSTGCVGWMFDRKGLLVIEKSDDIDEEELMMQSIEAGAEDFSP-EDDVYEILTS 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYT 236
F ++++L+ G+K S+ + P +D + IK + K+L L+ DV+KV
Sbjct: 178 VEDFSAVRDALQEAGYKFSSADLEYIPQNTSALEDEKDIKNMIKMLEMLEDNDDVQKVSH 237
Query: 237 NALIFD 242
N I D
Sbjct: 238 NWEIPD 243
>gi|392375445|ref|YP_003207278.1| hypothetical protein DAMO_2401 [Candidatus Methylomirabilis
oxyfera]
gi|258593138|emb|CBE69449.1| conserved hypothetical protein; YebC-like [Candidatus
Methylomirabilis oxyfera]
Length = 249
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 140/244 (57%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IK KK VDA+RG++ T+++RE+ VA G +PD N +LRLA+EKA N
Sbjct: 1 MSGHSKWSGIKHKKAKVDAQRGRVFTKLIREITVAARAGGGDPDGNPRLRLAVEKAKAVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P++NI RAIQK + +Y E YEGY G A++++ +T+N+ RT IR F
Sbjct: 61 MPQDNIQRAIQKGTGELPG--TSYEEYIYEGYGPGGVAVLLEIVTDNKNRTAPEIRKAFA 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQL-LFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL + G V +MF G + ++ ++ LL + LE GAED + D+ +IT+P
Sbjct: 119 KYGGNLGESGCVAWMFDKKGLIQVYTSEADEDRLLGVVLEAGAED-VRRSDDTFEVITAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K SL + M P + + +A ++ +L+ L++ DV+ VY N
Sbjct: 178 KDLERVKASLTKEKIGIAEGEVTMLPQNTVKLEGKQAQQMLQLMETLEEHDDVQNVYANF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIPD 241
>gi|359300466|ref|ZP_09186305.1| hypothetical protein Haemo_09959 [Haemophilus [parainfluenzae] CCUG
13788]
gi|402305199|ref|ZP_10824258.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
sputorum HK 2154]
gi|400376312|gb|EJP29199.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
sputorum HK 2154]
Length = 246
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G +N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVASNPRLRSAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
++++ +E GFK + + + M P T++ A KL +L+ L+ DV+ VY N
Sbjct: 177 EDLGDVRDGIEKAGFKIQEAEVTMIPSTSVDLDAETAPKLLRLIEMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|157375168|ref|YP_001473768.1| hypothetical protein Ssed_2031 [Shewanella sediminis HAW-EB3]
gi|157317542|gb|ABV36640.1| protein of unknown function DUF28 [Shewanella sediminis HAW-EB3]
Length = 248
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
MAGHSKW NIK +K DAKRGK+ T+ +REL VA G++ D+N +LR AI+KAL N
Sbjct: 1 MAGHSKWDNIKHRKAAQDAKRGKLFTKFIRELTVAAREGGSDVDSNPRLRAAIDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI++ + + + I YEGY G A++V+ +T+N+ RTVS +RN F+
Sbjct: 61 MTRDTVERAIKRGAGELDGQVLETI--MYEGYGPGGTAVMVETMTDNKNRTVSGVRNAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K+GGNL +GSV ++F+ G + + ++T++D AL+ GA+D + +D I + T+P
Sbjct: 119 KSGGNLGTDGSVSYLFEKRGVISYAEGADEDTIMDAALDAGADDVVTHEDGSIDVFTTPE 178
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
F +K++L+ T A ++ + M P T A K +L++ L+ DV++VY NA
Sbjct: 179 DFGAVKDALDATELVAINAEVTMIPSTKAELDASTAPKFIRLIDNLEDHDDVQEVYHNAD 238
Query: 240 IFD 242
I D
Sbjct: 239 ISD 241
>gi|126729301|ref|ZP_01745115.1| hypothetical protein SSE37_23914 [Sagittula stellata E-37]
gi|126710291|gb|EBA09343.1| hypothetical protein SSE37_23914 [Sagittula stellata E-37]
Length = 248
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 152/239 (63%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K D R K+ +++ +E+ +A G+ +P+ N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDKLRAKVFSKLSKEITIAAKMGDPDPEKNPRLRLAVKEARGQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + + +Y E+RYEGY NG A+IV+ +T+NR RT SN+R++F+
Sbjct: 61 MPKDNIERAIKKA---VGGDAEDYEEIRYEGYGPNGVAVIVETMTDNRNRTASNVRSLFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF+ G++++ + + ++ A+E GAED +D + I +
Sbjct: 118 KNGGNLGETGSVGFMFERKGEIVYPASAGDADDVMMAAIEAGAEDVESSEDGHV-IYCAD 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++ ++LE ++ES+ +V +P T L KL++ L++ DV++V TN
Sbjct: 177 TDLNDVSSALEGALGESESTKLVWKPTTTTELDLDGMNSLMKLVDALEEDDDVQRVTTN 235
>gi|297616925|ref|YP_003702084.1| hypothetical protein Slip_0739 [Syntrophothermus lipocalidus DSM
12680]
gi|297144762|gb|ADI01519.1| protein of unknown function DUF28 [Syntrophothermus lipocalidus DSM
12680]
Length = 253
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 147/247 (59%), Gaps = 8/247 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK D K+GK+ T+I +E+ +A + G +PD N +L+ I+KA N
Sbjct: 1 MSGHSKWANIKHKKARSDEKKGKVFTKIAKEIIIAARDGGGDPDNNPRLKALIQKAKGVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RAI++ I+ NI EV YEGY G A+++ +T+NR RT ++IR++F+
Sbjct: 61 MPNENILRAIKRGTGEIEGGNIE--EVTYEGYGPGGVALMLSIVTDNRNRTAADIRHLFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
K+GGNL + G V +MF+ G L + + +A+E GAED D + +IT
Sbjct: 119 KHGGNLGEAGCVSWMFRKKGLLTLNSEDIGMDADEFMLIAIEAGAEDVREDS-GVLEVIT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVY 235
SP F +K LE G + +S+ + M P T + D E A K+ KL++ L+ DV++VY
Sbjct: 178 SPEDFSTVKEQLENYGIRFDSAQVAMVPETIVDVNDLETAKKVLKLVDILEDHDDVQEVY 237
Query: 236 TNALIFD 242
N I D
Sbjct: 238 ANFSIPD 244
>gi|260912900|ref|ZP_05919385.1| YebC like protein [Pasteurella dagmatis ATCC 43325]
gi|260632890|gb|EEX51056.1| YebC like protein [Pasteurella dagmatis ATCC 43325]
Length = 246
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL +N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDVSANPRLRAAVDKALSSN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKVYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + + ++ +++ A+E GA+D +D + T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILISSGDEDIIMEAAIESGADDVQAQEDGSFEVYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E G K +++ + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGIKVDNAEVTMIPSTTVELDAETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|46907763|ref|YP_014152.1| hypothetical protein LMOf2365_1554 [Listeria monocytogenes serotype
4b str. F2365]
gi|47094259|ref|ZP_00231968.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 4b H7858]
gi|226224136|ref|YP_002758243.1| hypothetical protein Lm4b_01545 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254824406|ref|ZP_05229407.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852159|ref|ZP_05241507.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254931470|ref|ZP_05264829.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254992895|ref|ZP_05275085.1| hypothetical protein LmonocytoFSL_07499 [Listeria monocytogenes FSL
J2-064]
gi|255520703|ref|ZP_05387940.1| hypothetical protein LmonocFSL_05671 [Listeria monocytogenes FSL
J1-175]
gi|300764798|ref|ZP_07074788.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|386732273|ref|YP_006205769.1| hypothetical protein MUO_07905 [Listeria monocytogenes 07PF0776]
gi|404281094|ref|YP_006681992.1| hypothetical protein LMOSLCC2755_1542 [Listeria monocytogenes
SLCC2755]
gi|404286957|ref|YP_006693543.1| hypothetical protein LMOSLCC2482_1590 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405749879|ref|YP_006673345.1| hypothetical protein LMOATCC19117_1544 [Listeria monocytogenes ATCC
19117]
gi|405752755|ref|YP_006676220.1| hypothetical protein LMOSLCC2378_1551 [Listeria monocytogenes
SLCC2378]
gi|405755693|ref|YP_006679157.1| hypothetical protein LMOSLCC2540_1614 [Listeria monocytogenes
SLCC2540]
gi|406704308|ref|YP_006754662.1| hypothetical protein LMOL312_1533 [Listeria monocytogenes L312]
gi|417316074|ref|ZP_12102732.1| hypothetical protein LM1816_06595 [Listeria monocytogenes J1816]
gi|417317647|ref|ZP_12104259.1| hypothetical protein LM220_11927 [Listeria monocytogenes J1-220]
gi|424823297|ref|ZP_18248310.1| hypothetical protein LMOSA_24570 [Listeria monocytogenes str. Scott
A]
gi|60390924|sp|Q71ZD5.1|Y1554_LISMF RecName: Full=Probable transcriptional regulatory protein
LMOf2365_1554
gi|46881032|gb|AAT04329.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47017365|gb|EAL08189.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 4b H7858]
gi|225876598|emb|CAS05307.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605462|gb|EEW18070.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293583022|gb|EFF95054.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293593641|gb|EFG01402.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300514474|gb|EFK41531.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328465571|gb|EGF36800.1| hypothetical protein LM1816_06595 [Listeria monocytogenes J1816]
gi|328474895|gb|EGF45695.1| hypothetical protein LM220_11927 [Listeria monocytogenes J1-220]
gi|332311977|gb|EGJ25072.1| hypothetical protein LMOSA_24570 [Listeria monocytogenes str. Scott
A]
gi|384391031|gb|AFH80101.1| hypothetical protein MUO_07905 [Listeria monocytogenes 07PF0776]
gi|404219079|emb|CBY70443.1| hypothetical protein LMOATCC19117_1544 [Listeria monocytogenes ATCC
19117]
gi|404221955|emb|CBY73318.1| hypothetical protein LMOSLCC2378_1551 [Listeria monocytogenes
SLCC2378]
gi|404224893|emb|CBY76255.1| hypothetical protein LMOSLCC2540_1614 [Listeria monocytogenes
SLCC2540]
gi|404227729|emb|CBY49134.1| hypothetical protein LMOSLCC2755_1542 [Listeria monocytogenes
SLCC2755]
gi|404245886|emb|CBY04111.1| hypothetical protein LMOSLCC2482_1590 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361338|emb|CBY67611.1| hypothetical protein LMOL312_1533 [Listeria monocytogenes L312]
Length = 241
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 141/243 (58%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ +K D+KR K+ ++ RE+ VA G +P+ N LRL ++KA N+
Sbjct: 1 MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKAAGNTSGE--NYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + + A+E GA+D + +D I T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEAGADDVEVSED-VFEIFTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ F E+K +L+ G+ ++ + M P + + K+L L+ DV++VYTN
Sbjct: 178 PATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQFDKMLEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|387774113|ref|ZP_10129387.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
parahaemolyticus HK385]
gi|386902663|gb|EIJ67498.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
parahaemolyticus HK385]
Length = 246
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 139/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRSAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI++ + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIERGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I TS
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTSW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T++ A KL +L+ L+ DV+ VY N
Sbjct: 177 EDLGNVRDGIEKAGFKIQEAEVTMIPSTSVDLDAETAPKLLRLIEMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|398311640|ref|ZP_10515114.1| hypothetical protein BmojR_20127 [Bacillus mojavensis RO-H-1]
Length = 239
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 149/242 (61%), Gaps = 10/242 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKW NI+++K DAKRGKI ++ +E+ VA G +P+ N LRL IEKA AN
Sbjct: 1 MAGHSKWKNIQKRKNAQDAKRGKIFMKLAKEIYVAAKQGGADPEANSALRLVIEKAKGAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P NI RA++K + ++ +Y E+ YEGY +G A++V+C+T+N+ RT +N+R FN
Sbjct: 61 MPNENIDRALKKAAGS--QDDSSYEEITYEGYGPSGIAVMVECLTDNKNRTATNVRTAFN 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK----NTLLDLALEKGAEDFLIDKDNKITII 175
KNGG+L + G V F+F+ G + ++ +LD+ +E G E+ +++ ++
Sbjct: 119 KNGGSLGESGCVAFLFERKGYIAIDRTERQIEEDELMLDV-IEAGGEELRTEEEY-FEVL 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
++P +F ++K +LE + +S+ + M P T D KL+KL++ L+ DV+ VY
Sbjct: 177 SAPERFEKVKAALE-ADYPVDSAEVTMIPKTYADVDDEAVEKLEKLIDTLEDDDDVQAVY 235
Query: 236 TN 237
TN
Sbjct: 236 TN 237
>gi|339497661|ref|ZP_08658637.1| hypothetical protein LpseK3_16109 [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 240
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ +L VA G +P+ N LRL +EKA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + EV YEGY G A++V+ T+N RTVS +RN F
Sbjct: 61 MPKDNIQRALDKASGA---GGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSTVRNSFK 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
GG L GSV F F G L PN ++T+L+ ALE GAED D I
Sbjct: 118 HAGGALGTSGSVAFQFDRKGYLAIDREAYPNLDEDTVLEAALEAGAEDVQT-ADEVFEIY 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T P+ F ++ +L GF E + I M + D + KL L++EL++ DV VY
Sbjct: 177 TDPADFQTVEGALTEAGFVFEDAEITMIAQNPMTITDEDREKLDHLVDELEENEDVLAVY 236
Query: 236 TNA 238
T A
Sbjct: 237 TTA 239
>gi|227431945|ref|ZP_03913965.1| protein of hypothetical function DUF28 [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|381336930|ref|YP_005174705.1| hypothetical protein MI1_06475 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|227352230|gb|EEJ42436.1| protein of hypothetical function DUF28 [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|356644896|gb|AET30739.1| hypothetical protein MI1_06475 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 240
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 135/243 (55%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI +I +L VA G +PD N LRL +EKA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKIAHDLYVAAKAGGADPDMNASLRLVVEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RA+ K + + EV YEGY G A++V+ T+N RTVS++RN F
Sbjct: 61 MPKENIQRALDKASGA---NGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSSVRNSFK 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
GG L GSV F F G L P+ ++T+L+ ALE GAED D+ I
Sbjct: 118 HAGGALGTSGSVAFQFDRRGYLAIDRSAFPDLDEDTVLEAALEAGAEDVQT-SDDVFEIY 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T P+ F ++++L G+ E + + M + + + KL KL++EL+ DV VY
Sbjct: 177 TEPADFQAVESALTEAGYVFEDAEVTMIAQNPMDISEEDREKLDKLVDELEDNEDVLAVY 236
Query: 236 TNA 238
T A
Sbjct: 237 TTA 239
>gi|16803575|ref|NP_465060.1| hypothetical protein lmo1535 [Listeria monocytogenes EGD-e]
gi|254828231|ref|ZP_05232918.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|284801925|ref|YP_003413790.1| hypothetical protein LM5578_1680 [Listeria monocytogenes 08-5578]
gi|284995067|ref|YP_003416835.1| hypothetical protein LM5923_1632 [Listeria monocytogenes 08-5923]
gi|386050511|ref|YP_005968502.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386053788|ref|YP_005971346.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|404284027|ref|YP_006684924.1| hypothetical protein LMOSLCC2372_1597 [Listeria monocytogenes
SLCC2372]
gi|405758583|ref|YP_006687859.1| hypothetical protein LMOSLCC2479_1596 [Listeria monocytogenes
SLCC2479]
gi|33517071|sp|Q8Y6Z5.1|Y1535_LISMO RecName: Full=Probable transcriptional regulatory protein lmo1535
gi|16410964|emb|CAC99613.1| lmo1535 [Listeria monocytogenes EGD-e]
gi|258600619|gb|EEW13944.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|284057487|gb|ADB68428.1| hypothetical protein LM5578_1680 [Listeria monocytogenes 08-5578]
gi|284060534|gb|ADB71473.1| hypothetical protein LM5923_1632 [Listeria monocytogenes 08-5923]
gi|346424357|gb|AEO25882.1| UPF0082 protein [Listeria monocytogenes FSL R2-561]
gi|346646439|gb|AEO39064.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
gi|404233529|emb|CBY54932.1| hypothetical protein LMOSLCC2372_1597 [Listeria monocytogenes
SLCC2372]
gi|404236465|emb|CBY57867.1| hypothetical protein LMOSLCC2479_1596 [Listeria monocytogenes
SLCC2479]
gi|441471229|emb|CCQ20984.1| Probable transcriptional regulatory protein lmo1535 [Listeria
monocytogenes]
gi|441474358|emb|CCQ24112.1| Probable transcriptional regulatory protein lmo1535 [Listeria
monocytogenes N53-1]
Length = 241
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 140/243 (57%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ +K D+KR K+ ++ RE+ VA G +P N LRL ++KA N+
Sbjct: 1 MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPSLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K + N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKASGNTSGE--NYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + A+E GA+D + +D I T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLTVDEEEFMLEAIEAGADDVEVSED-VFEIFTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ F E+K +L+ G+ ++ + M P + + K+L L+ DV++VYTN
Sbjct: 178 PATFSEVKEALQEAGYTFATAELSMFPTVYNEIAENNQTQFDKMLEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|16272269|ref|NP_438481.1| hypothetical protein HI0315 [Haemophilus influenzae Rd KW20]
gi|68248922|ref|YP_248034.1| hypothetical protein NTHI0433 [Haemophilus influenzae 86-028NP]
gi|145628665|ref|ZP_01784465.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
gi|145632566|ref|ZP_01788300.1| hypothetical protein CGSHi3655_02089 [Haemophilus influenzae 3655]
gi|145638772|ref|ZP_01794381.1| dATP pyrophosphohydrolase [Haemophilus influenzae PittII]
gi|145640259|ref|ZP_01795843.1| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae
R3021]
gi|148825406|ref|YP_001290159.1| hypothetical protein CGSHiEE_01480 [Haemophilus influenzae PittEE]
gi|148827467|ref|YP_001292220.1| hypothetical protein CGSHiGG_04390 [Haemophilus influenzae PittGG]
gi|229846403|ref|ZP_04466511.1| hypothetical protein CGSHi7P49H1_07020 [Haemophilus influenzae
7P49H1]
gi|260581217|ref|ZP_05849036.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|319896647|ref|YP_004134840.1| hypothetical protein HIBPF02590 [Haemophilus influenzae F3031]
gi|378696505|ref|YP_005178463.1| hypothetical protein HIB_04330 [Haemophilus influenzae 10810]
gi|386265289|ref|YP_005828781.1| hypothetical protein R2846_0265 [Haemophilus influenzae R2846]
gi|1175837|sp|P44634.1|Y315_HAEIN RecName: Full=Probable transcriptional regulatory protein HI_0315
gi|81336667|sp|Q4QNM3.1|Y433_HAEI8 RecName: Full=Probable transcriptional regulatory protein NTHI0433
gi|166227256|sp|A5UGD1.1|Y4390_HAEIG RecName: Full=Probable transcriptional regulatory protein
CGSHiGG_04390
gi|166231382|sp|A5UAH5.1|Y1480_HAEIE RecName: Full=Probable transcriptional regulatory protein
CGSHiEE_01480
gi|1573285|gb|AAC21979.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68057121|gb|AAX87374.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
gi|144979135|gb|EDJ88821.1| Holliday junction resolvase [Haemophilus influenzae 22.1-21]
gi|144986761|gb|EDJ93313.1| hypothetical protein CGSHi3655_02089 [Haemophilus influenzae 3655]
gi|145272367|gb|EDK12275.1| dATP pyrophosphohydrolase [Haemophilus influenzae PittII]
gi|145274845|gb|EDK14707.1| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae
22.4-21]
gi|148715566|gb|ABQ97776.1| hypothetical protein CGSHiEE_01480 [Haemophilus influenzae PittEE]
gi|148718709|gb|ABQ99836.1| hypothetical protein CGSHiGG_04390 [Haemophilus influenzae PittGG]
gi|229810496|gb|EEP46214.1| hypothetical protein CGSHi7P49H1_07020 [Haemophilus influenzae
7P49H1]
gi|260092142|gb|EEW76086.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|301169024|emb|CBW28621.1| conserved protein [Haemophilus influenzae 10810]
gi|309750262|gb|ADO80246.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
gi|309972525|gb|ADO95726.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
gi|317432149|emb|CBY80500.1| conserved hypothetical protein [Haemophilus influenzae F3031]
Length = 246
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EICD 240
>gi|342904011|ref|ZP_08725813.1| UPF0082 protein [Haemophilus haemolyticus M21621]
gi|342904687|ref|ZP_08726486.1| UPF0082 protein [Haemophilus haemolyticus M21621]
gi|341953108|gb|EGT79622.1| UPF0082 protein [Haemophilus haemolyticus M21621]
gi|341954020|gb|EGT80514.1| UPF0082 protein [Haemophilus haemolyticus M21621]
Length = 246
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIEQADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|170078248|ref|YP_001734886.1| hypothetical protein SYNPCC7002_A1640 [Synechococcus sp. PCC 7002]
gi|226736390|sp|B1XP37.1|Y1640_SYNP2 RecName: Full=Probable transcriptional regulatory protein
SYNPCC7002_A1640
gi|169885917|gb|ACA99630.1| conserved hypothetical protein (DUF28) [Synechococcus sp. PCC 7002]
Length = 250
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 141/243 (58%), Gaps = 3/243 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDAK+GK T++ R + VA G +P N +LR AIEKA A
Sbjct: 1 MAGHSKWANIKRQKARVDAKKGKTFTQLSRAIIVAARHGLPDPAGNFQLRTAIEKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP NI RAI K + NY E+RYEGY G AI+++ +T+NR RT +++R+ F+
Sbjct: 61 IPNENIERAIAKGAGTYNDGEANYEEIRYEGYGAGGVAILIEALTDNRNRTAADLRSAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDF-LIDKDNKITIITSP 178
KNGGNL + G V +MF H G + + LL+ +L AE + I+ +++ ++++
Sbjct: 121 KNGGNLGETGCVSWMFSHKGVVTLTGEIDEEALLEASLIGEAEGYSAIEDSDEVEVLSAV 180
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYTN 237
+ +L+ GF + + + P T + D I+ + K++ ++ L DV+ V +N
Sbjct: 181 ENLEHLNQTLQDAGFTVKEAELRWFPETEMNLTDEVQIQTILKMIETIEALDDVQTVTSN 240
Query: 238 ALI 240
I
Sbjct: 241 LAI 243
>gi|414163918|ref|ZP_11420165.1| UPF0082 protein [Afipia felis ATCC 53690]
gi|410881698|gb|EKS29538.1| UPF0082 protein [Afipia felis ATCC 53690]
Length = 248
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHS++ NI +K DA R KI ++ RE+ VA G +P N +LR A+ A N
Sbjct: 1 MAGHSQFKNIMHRKGKQDAMRSKIFGKLAREITVAAKLGTPDPAMNPRLRAAVIAARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I E +Y E+RYEGY G A+IV+ +T+NR R S+IR+ F
Sbjct: 61 MPKDNIERAIKKA---IGGEGESYDEIRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + GSV FMF H G + + +T+L+ A++ GA+D ++ D+ I TS
Sbjct: 118 KSGGNLGETGSVSFMFDHVGVIEYDAAKADADTMLEAAIDAGADD-VVSSDDGHEIYTSQ 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+ E +LE + + ++ +P NI D KL KLL++L + DV+ VY N
Sbjct: 177 ASLSEAAKALEAKFGEPRKAALIWKPQNNIAVSDEVGEKLFKLLDQLNEHDDVQNVYANF 236
Query: 239 LIFD 242
+ D
Sbjct: 237 EVSD 240
>gi|145631437|ref|ZP_01787207.1| dATP pyrophosphohydrolase [Haemophilus influenzae R3021]
gi|319775817|ref|YP_004138305.1| hypothetical protein HICON_11610 [Haemophilus influenzae F3047]
gi|419839283|ref|ZP_14362696.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
haemolyticus HK386]
gi|144982974|gb|EDJ90483.1| dATP pyrophosphohydrolase [Haemophilus influenzae R3021]
gi|317450408|emb|CBY86624.1| conserved hypothetical protein [Haemophilus influenzae F3047]
gi|386909591|gb|EIJ74260.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus
haemolyticus HK386]
Length = 246
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|145636551|ref|ZP_01792219.1| dATP pyrophosphohydrolase [Haemophilus influenzae PittHH]
gi|145270376|gb|EDK10311.1| dATP pyrophosphohydrolase [Haemophilus influenzae PittHH]
Length = 246
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRTAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|118588338|ref|ZP_01545747.1| hypothetical protein SIAM614_23692 [Stappia aggregata IAM 12614]
gi|118439044|gb|EAV45676.1| hypothetical protein SIAM614_23692 [Stappia aggregata IAM 12614]
Length = 248
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 147/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSK+ NI +K DA R K+ +++ +E+ VA G+ +PD+N +LRLA++ A +
Sbjct: 1 MAGHSKFKNIMHRKGRQDAARSKMFSKLSKEITVAAKMGDPDPDSNPRLRLAVQNAKAQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI K+ S ++ NY EVRYEGY G A++V+ +T+NR R+ SNIR+ F
Sbjct: 61 MPKENIQRAINKSQSG---DDDNYEEVRYEGYGPAGVAVVVEALTDNRNRSASNIRSYFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L + GSV FMF G++++ P + + +L+ A+E GAED D+ TI T+
Sbjct: 118 KCGGSLGETGSVSFMFDRVGEIIYKPEAGEADAVLEAAIEAGAEDVQSDESGH-TIYTAF 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
++ +LE +A+S+ I+ +P +A + KL++ L+ DV+ VY+N
Sbjct: 177 EDLNDVSAALEKALGEADSTKIIWKPQNLTPVNADKAQTMMKLIDMLEDDDDVQNVYSN 235
>gi|47097707|ref|ZP_00235214.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 1/2a F6854]
gi|254912209|ref|ZP_05262221.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936537|ref|ZP_05268234.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|386047187|ref|YP_005965519.1| hypothetical protein [Listeria monocytogenes J0161]
gi|47013918|gb|EAL04944.1| conserved hypothetical protein TIGR01033 [Listeria monocytogenes
str. 1/2a F6854]
gi|258609131|gb|EEW21739.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293590182|gb|EFF98516.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534178|gb|AEO03619.1| hypothetical protein LMOG_00161 [Listeria monocytogenes J0161]
Length = 241
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 140/243 (57%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ +K D+KR K+ ++ RE+ VA G +P N LRL ++KA N+
Sbjct: 1 MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPSLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K + N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKASGNTSGE--NYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + A+E GA+D + +D I T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLTVDEEEFMLEAIEAGADDVEVSED-VFEIFTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ F E+K +L+ G+ ++ + M P + + K+L L+ DV++VYTN
Sbjct: 178 PATFSEVKEALQGAGYTFATAELSMFPTVYNEIAENNQTQFDKMLEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|373467471|ref|ZP_09558768.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus sp.
oral taxon 851 str. F0397]
gi|371758672|gb|EHO47435.1| DNA-binding regulatory protein, YebC/PmpR family [Haemophilus sp.
oral taxon 851 str. F0397]
Length = 246
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVGANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIEQADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|315303295|ref|ZP_07873930.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596]
gi|313628342|gb|EFR96840.1| conserved hypothetical protein [Listeria ivanovii FSL F6-596]
Length = 241
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 141/243 (58%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ +K D+KR K+ ++ RE+ VA G +P+ N LRL ++KA N+
Sbjct: 1 MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKAAGNTNGE--NYDEVTYEGYAPGGIAVLVHTLTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + A+E GA+D + +D I T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLTVDEEEFMLEAIEAGADDVEVSED-VFEIFTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F E+K++L+ G+ ++ + M P + I+ K++ L+ DV++VYTN
Sbjct: 178 PGTFSEVKDTLQAAGYTFATAELSMFPTVYNEIAENNKIQFDKMMEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|422416036|ref|ZP_16492993.1| conserved hypothetical protein [Listeria innocua FSL J1-023]
gi|313623661|gb|EFR93817.1| conserved hypothetical protein [Listeria innocua FSL J1-023]
Length = 241
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 140/243 (57%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKW NI+ +K D+KR K+ ++ RE+ VA G +P+ N LRL ++KA N+
Sbjct: 1 MAGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKAAGNTSGE--NYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + A+E GA+D + D+ + T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLTVDEEEFMLEAIEAGADDVEV-SDDVFEVFTE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++K++L+ G+ ++ + M P + + K++ L+ DV++VYTN
Sbjct: 178 PGAFSDVKDALQQAGYSFATAELSMFPTVYNEIAENNQTQFDKMMEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|414175519|ref|ZP_11429923.1| UPF0082 protein [Afipia broomeae ATCC 49717]
gi|410889348|gb|EKS37151.1| UPF0082 protein [Afipia broomeae ATCC 49717]
Length = 248
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHS++ NI +K DA R K+ ++ RE+ VA G +P N +LRLAI A N
Sbjct: 1 MAGHSQFKNIMHRKGKQDAMRSKMFGKLAREITVAAKLGTPDPAMNPRLRLAITAARAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K I N+ NY E+RYEGY G A+IV+ +T+NR R S+IR+ F
Sbjct: 61 VPKDNIERAIKKA---IGNDGENYDEMRYEGYGPGGVAVIVEALTDNRNRAASDIRSYFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K+GGNL + GSV FMF G + + + +L+ A+E GA+D +D + SP
Sbjct: 118 KSGGNLGETGSVSFMFDRVGVIEYDAKVASDDAMLEAAIEAGADDVASSEDGH-EVYASP 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F E+ LE +A + ++ +P I D KL KLL+ L + DV+ VY N
Sbjct: 177 ETFREVAKGLEAKFGEARKAALIWKPQNTIAVDDETGEKLFKLLDLLNEHDDVQNVYANF 236
Query: 239 LIFD 242
+ D
Sbjct: 237 EVSD 240
>gi|408670658|ref|YP_006870729.1| hypothetical protein BgCN_0025 [Borrelia garinii NMJW1]
gi|407240480|gb|AFT83363.1| hypothetical protein BgCN_0025 [Borrelia garinii NMJW1]
Length = 243
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 152/239 (63%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW+ IKRKK +DAKR KI T+++RE+ +A G + ++N +LR+A+ KA AN
Sbjct: 1 MSGHSKWSTIKRKKGALDAKRNKIFTKLIREITIAAKIGGGDVESNPRLRVAVNKAKVAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI +AI+K NE + Y E+ YE Y+ G AI++ C+T+N+ RT S+++++
Sbjct: 61 MPKDNIEKAIKKGIGG--NEGVEYFEITYEAYAPYGVAIMIKCLTDNKNRTSSDVKSVLT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L GSV +MF G +++ L ++ +++ ALE GAED L+ +N+ +ITSP
Sbjct: 119 KGGGSLGTPGSVSYMFYRKGLIVYNLEKYLEDEIMEFALEAGAEDILVS-NNEAEVITSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
F ++ + L+ T FK E + + + P I +A K+ L+ +L+ DV++V N
Sbjct: 178 DDFDKVLSFLK-TKFKEEMAEVALIPENKISLNKEQAEKIILLIEKLEDFDDVQEVIHN 235
>gi|71275805|ref|ZP_00652089.1| Protein of unknown function DUF28 [Xylella fastidiosa Dixon]
gi|170730215|ref|YP_001775648.1| hypothetical protein Xfasm12_1059 [Xylella fastidiosa M12]
gi|226734072|sp|B0U2D9.1|Y1059_XYLFM RecName: Full=Probable transcriptional regulatory protein
Xfasm12_1059
gi|71163383|gb|EAO13101.1| Protein of unknown function DUF28 [Xylella fastidiosa Dixon]
gi|71729836|gb|EAO31934.1| Protein of unknown function DUF28 [Xylella fastidiosa Ann-1]
gi|167965008|gb|ACA12018.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 244
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 149/236 (63%), Gaps = 5/236 (2%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K D+KRGKI T+I+R++ VA G +P N LR+ I+KAL +N+ K+
Sbjct: 2 GRGPSIEARKNASDSKRGKIFTKIIRQIGVAARAGGGDPYNNPSLRVVIDKALASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y EVRYEGY+ G A+IVDC+T+NR+RTVS++R+ F+K GG
Sbjct: 62 VIERAIKKAIGEM--EGVQYEEVRYEGYAPGGVAVIVDCLTDNRLRTVSDVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLL-DLALEKGAEDFLI-DKDNKITIITSPSKF 181
N+ EGSV FMFK G L + L+ + A++ GAED ++ +D++I +IT+P F
Sbjct: 120 NMGAEGSVAFMFKRLGVLSYAHAIADEELITEAAIDAGAEDVMVYTQDDEIEVITTPEAF 179
Query: 182 IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+K + G + I R ++IV AI+++KLL+ L+ L DV+ VY+N
Sbjct: 180 SRVKEEMAALGLMPYHAEITFRADSDIVVDGDTAIQVRKLLDILEDLDDVQDVYSN 235
>gi|329123661|ref|ZP_08252221.1| YebC like protein [Haemophilus aegyptius ATCC 11116]
gi|327469860|gb|EGF15325.1| YebC like protein [Haemophilus aegyptius ATCC 11116]
Length = 246
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGIGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|238019729|ref|ZP_04600155.1| hypothetical protein VEIDISOL_01604 [Veillonella dispar ATCC 17748]
gi|237863770|gb|EEP65060.1| hypothetical protein VEIDISOL_01604 [Veillonella dispar ATCC 17748]
Length = 245
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 149/245 (60%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA + K+ T+I RE+ VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENIN-YIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
IPK+NI RAI K + ++N Y E+ YEGY G A+ V+ +T+NR R +++R+ F
Sbjct: 61 IPKDNIQRAIDKG---VGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
+K GGNL + G V +MFK G + ++ L LALE GAED L +D+ I T+
Sbjct: 118 SKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDELTMLALEAGAED-LKSEDDVFEIYTT 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P + ++ +L G + E + I M P T I +A+K+QK+L+ L L DV+ VY N
Sbjct: 177 PEDYDAVEAALADAGIETEVAKITMIPDTTIELTGDDAVKMQKMLDVLDDLDDVQNVYHN 236
Query: 238 ALIFD 242
++ D
Sbjct: 237 GILPD 241
>gi|145634686|ref|ZP_01790395.1| aspartyl-tRNA synthetase [Haemophilus influenzae PittAA]
gi|260582587|ref|ZP_05850377.1| aspartyl-tRNA synthetase [Haemophilus influenzae NT127]
gi|145268231|gb|EDK08226.1| aspartyl-tRNA synthetase [Haemophilus influenzae PittAA]
gi|260094398|gb|EEW78296.1| aspartyl-tRNA synthetase [Haemophilus influenzae NT127]
Length = 246
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIAEADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EDLGSVRDGIESAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EICD 240
>gi|194366900|ref|YP_002029510.1| hypothetical protein Smal_3128 [Stenotrophomonas maltophilia
R551-3]
gi|226703718|sp|B4ST36.1|Y3128_STRM5 RecName: Full=Probable transcriptional regulatory protein Smal_3128
gi|194349704|gb|ACF52827.1| protein of unknown function DUF28 [Stenotrophomonas maltophilia
R551-3]
Length = 243
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 150/236 (63%), Gaps = 4/236 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGKI T+I+RE+ VA G +P+ N +LR+A++K L AN+ K+
Sbjct: 2 GRGPSIENRKNASDAKRGKIFTKIIREIGVAARGGGGDPNNNPRLRVAMDKGLTANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y E+RYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKATGEL--EGVEYEEIRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F ++ + + A+E GA+D ++ +D I ++T+ +
Sbjct: 120 NMGTEGSVSFMFKRVGVLHFAAGADEDAISEAAIEAGADDIVVYPEDGAIDVLTAADSYH 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+K ++ G + + + R +I + ++++KLL+ L+ L DV+ VY+NA
Sbjct: 180 AVKEAMAAAGRTPDHAELTFRADNDIKVEGDTVLQVKKLLDMLEDLDDVQDVYSNA 235
>gi|150019034|ref|YP_001311288.1| hypothetical protein Cbei_4222 [Clostridium beijerinckii NCIMB
8052]
gi|189040286|sp|A6M152.1|Y4222_CLOB8 RecName: Full=Probable transcriptional regulatory protein Cbei_4222
gi|149905499|gb|ABR36332.1| protein of unknown function DUF28 [Clostridium beijerinckii NCIMB
8052]
Length = 245
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 148/240 (61%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ KK DAKRGKI T+I +E+ +A+ N G N D N KLR + KA AN
Sbjct: 1 MSGHSKWHNIQAKKGKTDAKRGKIFTKIGKEIVMAVKNGGANQDINAKLRDVVAKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P + I +AI+K + + + +NY + YEGY +G A+IV+ +T+N+ R+ N+R+ F
Sbjct: 61 MPNDTISKAIKKASGELSS--VNYENIVYEGYGPSGVAVIVETLTDNKNRSAGNVRSAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGN+ G V FMF+ G+++ K ++ L+ +AL+ GAEDF +++ + T+P
Sbjct: 119 KGGGNMGTSGCVSFMFQEKGEIVIEKEDKDEDELMMIALDAGAEDFASEEE-VFVVTTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+F ++ +LE G + + + M P T + +A K QK+L+ L DV++VY NA
Sbjct: 178 EEFGTVREALEAQGIEFLEASVKMIPDTYTAIDEADAKKFQKMLDLLDDDDDVQEVYHNA 237
>gi|188577437|ref|YP_001914366.1| hypothetical protein PXO_01555 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|226734704|sp|B2STK4.1|Y1555_XANOP RecName: Full=Probable transcriptional regulatory protein PXO_01555
gi|188521889|gb|ACD59834.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 242
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 153/235 (65%), Gaps = 4/235 (1%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K DAKRGK+ T+I+RE+ VA G +P N +LR A++K L AN+ K+
Sbjct: 2 GRGPSIEGRKNASDAKRGKMFTKIIREISVAARAGGGDPSNNPRLRTAMDKGLSANMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K+ + E + Y EVRYEGY+ G A+IVDC+T+NR+RTV+++R+ F+K GG
Sbjct: 62 VIERAIKKSTGEL--EGVEYEEVRYEGYAPGGVAVIVDCLTDNRVRTVADVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKFI 182
N+ EGSV FMFK G L F ++TL D A++ GA+D ++ +D I ++T+P F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSFAAGIDEDTLTDAAIDAGADDVVVYPEDGAIDVLTAPDAFA 179
Query: 183 EIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+++++L G + + I R +IV A++++KLL+ L+ L DV+ VY+N
Sbjct: 180 QVRDALAAAGLEPAHAEIAFRADNDIVVDGDTAVQVRKLLDMLEDLDDVQDVYSN 234
>gi|428314262|ref|YP_007125239.1| YebC/PmpR family DNA-binding regulatory protein [Microcoleus sp.
PCC 7113]
gi|428255874|gb|AFZ21833.1| DNA-binding regulatory protein, YebC/PmpR family [Microcoleus sp.
PCC 7113]
Length = 256
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 142/243 (58%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDA +GK ++ RE+ VA G +P+ N +LR AI+KA A
Sbjct: 1 MAGHSKWANIKRQKARVDAVKGKTFAKLSREIIVAARMGVPDPEGNFRLRTAIDKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K + + N+N N E+RYEGY +G AI+++ +T+NR RT +++R F
Sbjct: 61 IPNDNIDRAIAKGSGQLGNDNDNLEEIRYEGYGPSGVAILIEALTDNRNRTAADLRAAFT 120
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKIT----II 175
KNGGNL + G V +MF+ G ++ + LL+ +LE GA+ + + ++ + T +
Sbjct: 121 KNGGNLGETGCVSWMFEQKGVVILAGAVAEEQLLEASLEGGAQTYELSEEEEDTPVAEVF 180
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKV 234
T S + +L+ G + + P I + + A L KL++ L+ L DV+ V
Sbjct: 181 TEVSNLETLNQTLKEQGLPVREAELRWIPSNTIEVTEPDLARSLLKLMDALEDLDDVQSV 240
Query: 235 YTN 237
N
Sbjct: 241 TAN 243
>gi|315640546|ref|ZP_07895654.1| glucose-1-phosphate adenylyltransferase [Enterococcus italicus DSM
15952]
gi|315483750|gb|EFU74238.1| glucose-1-phosphate adenylyltransferase [Enterococcus italicus DSM
15952]
Length = 240
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 140/241 (58%), Gaps = 8/241 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ RE+ +A G N LRL I+KA AN
Sbjct: 1 MSGHSKWNNIQGRKNAQDAKRGKIFQKLSREIYIAAKAGGGEVSMNPGLRLVIDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K S I E NY E+ YEGY NG AI+V+ +T+NR RT +N+R F
Sbjct: 61 MPNDNIERAIKKATSGI--EGSNYEELTYEGYGPNGVAILVEALTDNRNRTQTNVRVAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT---KKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+NGG+L + GSV ++F+ G L + +L+ ++ GAED + + + I T
Sbjct: 119 RNGGSLGETGSVSYLFERQGYLAIAREGIALSEEQMLEAVIDAGAEDLQMQPE-VVEIYT 177
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P F+ +K +LE F + + M P T + D + +L +L+ +L+ DV +VYT
Sbjct: 178 DPEDFLVVKEALEAQ-FTLAQAELTMVPKTTVALNDAQLEQLSQLVTKLEDDDDVSEVYT 236
Query: 237 N 237
N
Sbjct: 237 N 237
>gi|15838504|ref|NP_299192.1| hypothetical protein XF1906 [Xylella fastidiosa 9a5c]
gi|33517108|sp|Q9PC75.1|Y1906_XYLFA RecName: Full=Probable transcriptional regulatory protein XF_1906
gi|9107001|gb|AAF84712.1|AE004010_9 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 244
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 149/236 (63%), Gaps = 5/236 (2%)
Query: 5 SKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKN 63
+ +I+ +K D+KRGKI T+I+R++ VA G +P N LR+ I+KAL +N+ K+
Sbjct: 2 GRGPSIEARKNASDSKRGKIFTKIIRQIGVAARAGGGDPSNNPSLRVVIDKALASNMSKD 61
Query: 64 NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
I RAI+K + E + Y EVRYEGY+ G A+IVDC+T+NR+RTVS++R+ F+K GG
Sbjct: 62 VIERAIKKAIGEM--EGVQYEEVRYEGYAPGGVAVIVDCLTDNRLRTVSDVRHAFSKCGG 119
Query: 124 NLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLI-DKDNKITIITSPSKF 181
N+ EGSV FMFK G L + + + + A++ GAED ++ +D++I +IT+P F
Sbjct: 120 NMGTEGSVAFMFKRLGVLSYAHAIADEERITEAAIDAGAEDVMVYTEDDEIEVITTPEAF 179
Query: 182 IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+K + G + I R ++IV AI+++KLL+ L+ L DV+ VY+N
Sbjct: 180 SRVKEEMAALGLMPYHAQITFRADSDIVVDGDTAIQVRKLLDILEDLDDVQDVYSN 235
>gi|397689746|ref|YP_006527000.1| Transcriptional regulator [Melioribacter roseus P3M]
gi|395811238|gb|AFN73987.1| Transcriptional regulator [Melioribacter roseus P3M]
Length = 243
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 148/240 (61%), Gaps = 5/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA IKRKK +DAKRGK+ T++++E+ +A G +P+ N +LRLAI+ A AN
Sbjct: 1 MSGHSKWATIKRKKAALDAKRGKLFTKLIKEITIAARQGGGDPEGNPRLRLAIDNAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + E Y EV YEGY G AI+V+ T+N+ RTV+ +R+IF+
Sbjct: 61 MPADNIERAIKKATGEL--EGATYYEVVYEGYGPGGIAILVEAATDNKNRTVAEVRHIFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGG+L + SV +MF+ G + ++ ++++ ++ GA+D ++D ++T+
Sbjct: 119 KNGGSLGESNSVAWMFERKGIITVKRDGMSEDEMMEIIIDAGADDLQTEEDF-FEVVTTL 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
F ++ +L G + E++ + + K EA K+ KL+ L+ DV+ V+TNA
Sbjct: 178 ESFEPVRRALVDKGLQVENASLQWIAKNQVAVKGEEAEKVMKLIESLEDNDDVQNVFTNA 237
>gi|217964318|ref|YP_002349996.1| hypothetical protein LMHCC_1034 [Listeria monocytogenes HCC23]
gi|290893937|ref|ZP_06556913.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|386008306|ref|YP_005926584.1| hypothetical protein lmo4a_1591 [Listeria monocytogenes L99]
gi|386026908|ref|YP_005947684.1| hypothetical protein LMM7_1621 [Listeria monocytogenes M7]
gi|404407973|ref|YP_006690688.1| hypothetical protein LMOSLCC2376_1490 [Listeria monocytogenes
SLCC2376]
gi|217333588|gb|ACK39382.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|290556475|gb|EFD90013.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|307571116|emb|CAR84295.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|336023489|gb|AEH92626.1| hypothetical protein LMM7_1621 [Listeria monocytogenes M7]
gi|404242122|emb|CBY63522.1| hypothetical protein LMOSLCC2376_1490 [Listeria monocytogenes
SLCC2376]
Length = 241
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 140/243 (57%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
M+GHSKW NI+ +K D+KR K+ ++ RE+ VA G +P N LRL ++KA N+
Sbjct: 1 MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPSLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKAAGNTSGE--NYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + + A+E GA+D + +D I T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEAGADDVEVSED-VFEIFTD 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P+ F E+K +L+ G+ ++ + M P + + K+L L+ DV++VYTN
Sbjct: 178 PALFPEVKEALQEAGYTFATAELSMFPTVYNEVAENHQTQFDKMLEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|427733766|ref|YP_007053310.1| YebC/PmpR family DNA-binding regulatory protein [Rivularia sp. PCC
7116]
gi|427368807|gb|AFY52763.1| DNA-binding regulatory protein, YebC/PmpR family [Rivularia sp. PCC
7116]
Length = 252
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 141/241 (58%), Gaps = 6/241 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDAN 59
MAGHSKWANIKR+K VDAKRGK T++ R + VA G +P+ N +LR AIEKA A
Sbjct: 1 MAGHSKWANIKRQKARVDAKRGKTFTQLSRAIIVAARNGVPDPNGNFQLRTAIEKAKAAG 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
IP +NI RAI K ++ E+RYEGY G AI+V+ +T+NR RT +++R F+
Sbjct: 61 IPNDNIERAIAKGAGTFSDDGAKLEEIRYEGYGPGGVAILVEALTDNRNRTAADLRAAFS 120
Query: 120 KNGGNLSKEGSVLFMFKHCG--QLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
KNGGNL + G V +MF G + +PN +K LL+ +LE GAE + + D+ +I+
Sbjct: 121 KNGGNLGETGCVSWMFDQKGICTVKDVPNEEK--LLEASLEGGAEFYEMSDDDMAEVISE 178
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIK-LQKLLNELKKLHDVKKVYT 236
+ + +L+ F + P N+ D E + L KL++ L+ + DV+ V +
Sbjct: 179 VADLENLNQTLQQEDFNVTDVELRWIPSNNVDVTDSEQARMLIKLIDTLESIDDVQNVTS 238
Query: 237 N 237
N
Sbjct: 239 N 239
>gi|183219483|ref|YP_001837479.1| hypothetical protein LEPBI_I0056 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189909626|ref|YP_001961181.1| hypothetical protein LBF_0056 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|226734028|sp|B0S959.1|Y056_LEPBA RecName: Full=Probable transcriptional regulatory protein LBF_0056
gi|226734029|sp|B0SJP0.1|Y056_LEPBP RecName: Full=Probable transcriptional regulatory protein
LEPBI_I0056
gi|167774302|gb|ABZ92603.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167777905|gb|ABZ96203.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 247
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 143/240 (59%), Gaps = 6/240 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GHSKWA I+RKK +DAKRG I TRI +E+ VA G + + N +LRLA+ KA AN
Sbjct: 1 MSGHSKWATIRRKKGAIDAKRGAIFTRIAKEISVAAKEGGGDQEGNPRLRLAVTKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RAI+K + E + Y E YE Y+ G AI+VD +T+ + RT I++I
Sbjct: 61 MPKDNIERAIKKGTGGL--EGMVYEECLYECYAPGGVAIMVDVLTDKKSRTTPEIKSILT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GG+L+ G+V +F+ GQL + + L DLAL GAED ++ D ++TSP
Sbjct: 119 KLGGSLANAGAVSRLFERKGQLTLKADQISEEALFDLALGAGAEDIQVN-DGMYVVLTSP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTN 237
S++ ++++L G E S I P T + + E A K+ KL+ L+ DV+ V +N
Sbjct: 178 SEYEAVQSALSSKGLNMEESEIKYIPMTTVEVNEKETAEKVMKLIENLEANDDVQGVSSN 237
>gi|116490816|ref|YP_810360.1| hypothetical protein OEOE_0768 [Oenococcus oeni PSU-1]
gi|290890261|ref|ZP_06553340.1| hypothetical protein AWRIB429_0730 [Oenococcus oeni AWRIB429]
gi|419759030|ref|ZP_14285342.1| hypothetical protein AWRIB304_1599 [Oenococcus oeni AWRIB304]
gi|419856746|ref|ZP_14379466.1| hypothetical protein AWRIB202_540 [Oenococcus oeni AWRIB202]
gi|419858734|ref|ZP_14381394.1| hypothetical protein AWRIB129_769 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421185222|ref|ZP_15642633.1| hypothetical protein AWRIB318_1595 [Oenococcus oeni AWRIB318]
gi|421187758|ref|ZP_15645102.1| hypothetical protein AWRIB419_521 [Oenococcus oeni AWRIB419]
gi|421189492|ref|ZP_15646806.1| hypothetical protein AWRIB422_538 [Oenococcus oeni AWRIB422]
gi|421191052|ref|ZP_15648336.1| hypothetical protein AWRIB548_373 [Oenococcus oeni AWRIB548]
gi|421194078|ref|ZP_15651313.1| hypothetical protein AWRIB553_1735 [Oenococcus oeni AWRIB553]
gi|421195534|ref|ZP_15652742.1| hypothetical protein AWRIB568_1501 [Oenococcus oeni AWRIB568]
gi|421197645|ref|ZP_15654820.1| hypothetical protein AWRIB576_1832 [Oenococcus oeni AWRIB576]
gi|122277002|sp|Q04FS7.1|Y768_OENOB RecName: Full=Probable transcriptional regulatory protein OEOE_0768
gi|116091541|gb|ABJ56695.1| hypothetical protein OEOE_0768 [Oenococcus oeni PSU-1]
gi|290480047|gb|EFD88692.1| hypothetical protein AWRIB429_0730 [Oenococcus oeni AWRIB429]
gi|399904485|gb|EJN91941.1| hypothetical protein AWRIB304_1599 [Oenococcus oeni AWRIB304]
gi|399964403|gb|EJN99044.1| hypothetical protein AWRIB318_1595 [Oenococcus oeni AWRIB318]
gi|399967004|gb|EJO01503.1| hypothetical protein AWRIB419_521 [Oenococcus oeni AWRIB419]
gi|399969696|gb|EJO04018.1| hypothetical protein AWRIB553_1735 [Oenococcus oeni AWRIB553]
gi|399972582|gb|EJO06781.1| hypothetical protein AWRIB422_538 [Oenococcus oeni AWRIB422]
gi|399973748|gb|EJO07913.1| hypothetical protein AWRIB548_373 [Oenococcus oeni AWRIB548]
gi|399975254|gb|EJO09322.1| hypothetical protein AWRIB576_1832 [Oenococcus oeni AWRIB576]
gi|399975959|gb|EJO09994.1| hypothetical protein AWRIB568_1501 [Oenococcus oeni AWRIB568]
gi|410497891|gb|EKP89359.1| hypothetical protein AWRIB129_769 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410499197|gb|EKP90633.1| hypothetical protein AWRIB202_540 [Oenococcus oeni AWRIB202]
Length = 240
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI +I +L VA G +P N LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKISHDLYVAAKAGGADPSANASLRLVMDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+N+ RA+ K ++ + E YEGY+ G A++V+ T+N RTVSN+RN FN
Sbjct: 61 MPKDNVQRALDKATGA---GDVKFEEATYEGYAPGGIAVLVETSTDNINRTVSNVRNSFN 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
+GG+L GSV F F G + P+ ++ +++ A+E GAED D+ I
Sbjct: 118 HHGGSLGTSGSVSFQFDRRGHFVIDRQSHPDITEDQVMEDAIEAGAEDVQT-SDDAFEIF 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
+ P+ F ++ +L G+ S I M P + + + K +KL++EL+ DV VY
Sbjct: 177 SQPADFAAVEGALTDKGYDLAESEITMIPQNPVEVPEADQEKFEKLIDELEDNDDVLAVY 236
Query: 236 TNA 238
T A
Sbjct: 237 TTA 239
>gi|401680364|ref|ZP_10812284.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
ACP1]
gi|400218689|gb|EJO49564.1| DNA-binding regulatory protein, YebC/PmpR family [Veillonella sp.
ACP1]
Length = 245
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 149/245 (60%), Gaps = 7/245 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWANIK KK DA + K+ T+I RE+ VA G +P N++L+LA++KA + N
Sbjct: 1 MSGHSKWANIKHKKGKTDALKAKLATKIGREITVAARMGGADPTGNMRLKLALQKARENN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENIN-YIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
IPK+NI RAI K + ++N Y E+ YEGY G A+ V+ +T+NR R +++R+ F
Sbjct: 61 IPKDNIQRAIDKG---VGATDMNAYEEIVYEGYGPAGVAVTVEVMTDNRNRAAADVRHAF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
+K GGNL + G V +MFK G + ++ L LAL+ GAED L +D+ I T+
Sbjct: 118 SKQGGNLGESGCVGWMFKSKGVFVIDKEGHDEDELTLLALDAGAED-LKAEDDVFEIYTT 176
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++ +L G + E + I M P T I +A+K+QK+L+ L L DV+ VY N
Sbjct: 177 PEDFDAVEQALADAGIETEVAKITMIPDTTIELSGDDAVKMQKMLDVLDDLDDVQNVYHN 236
Query: 238 ALIFD 242
++ D
Sbjct: 237 GILPD 241
>gi|16800638|ref|NP_470906.1| hypothetical protein lin1570 [Listeria innocua Clip11262]
gi|422413026|ref|ZP_16489985.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
gi|33517083|sp|Q92BH9.1|Y1570_LISIN RecName: Full=Probable transcriptional regulatory protein lin1570
gi|16414057|emb|CAC96801.1| lin1570 [Listeria innocua Clip11262]
gi|313618796|gb|EFR90692.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
Length = 241
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 140/243 (57%), Gaps = 6/243 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANI 60
MAGHSKW NI+ +K D+KR K+ ++ RE+ VA G +P+ N LRL ++KA N+
Sbjct: 1 MAGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNM 60
Query: 61 PKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
P +NI RAI K N E NY EV YEGY+ G A++V +T+N+ RT +N+R FNK
Sbjct: 61 PNDNIKRAIDKAAGNTSGE--NYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNK 118
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIITS 177
NGG+L + GSV +MF G L+ L + + A+E GA+D + D+ + T
Sbjct: 119 NGGSLGETGSVSYMFDRKGYLVILREGLTVDEEEFMLEAIEAGADDVEV-SDDVFEVFTE 177
Query: 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
P F ++K++L+ G+ ++ + M P + + K++ L+ DV++VYTN
Sbjct: 178 PGAFSDVKDALQQAGYTFATAELSMFPTVYNEIAENNQTQFDKMMEALEDDDDVQEVYTN 237
Query: 238 ALI 240
A I
Sbjct: 238 AEI 240
>gi|227514555|ref|ZP_03944604.1| protein of hypothetical function DUF28 [Lactobacillus fermentum
ATCC 14931]
gi|227087112|gb|EEI22424.1| protein of hypothetical function DUF28 [Lactobacillus fermentum
ATCC 14931]
Length = 247
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 142/247 (57%), Gaps = 10/247 (4%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI +I R+L A G+ +PD N +LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPDNNPQLRLVMDKARAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI RAI K+ N+ E+ YEGY G A++V C+T+N+ RT + IR+ F
Sbjct: 61 MPKQNIQRAIDKDTGA---GGANFEEITYEGYGPGGVAVMVFCLTDNKNRTAAAIRSAFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN----TKKNTLLDLALEKGAEDFLIDKDNKITII 175
+GG+L GSV +MF G + L + + + L+D AL+ GA+D D+K I
Sbjct: 118 HSGGSLGATGSVSYMFNRQGLIEILRDGLDKDEDDMLMD-ALDAGADDMQA-TDDKFQIF 175
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T PS ++++L+ G++ E++ + M P + + Q L++EL+ DV VY
Sbjct: 176 TDPSAMTSVRDALQEQGYELETAEVTMIPENKTKVPADKVGQYQHLIDELEDNDDVADVY 235
Query: 236 TNALIFD 242
A + D
Sbjct: 236 EAAFVED 242
>gi|374340585|ref|YP_005097321.1| YebC/PmpR family DNA-binding regulatory protein [Marinitoga
piezophila KA3]
gi|372102119|gb|AEX86023.1| DNA-binding regulatory protein, YebC/PmpR family [Marinitoga
piezophila KA3]
Length = 250
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 153/249 (61%), Gaps = 16/249 (6%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KWANIK +K DAKR KI T+++REL VA G++P+ N +LR AIEKA DAN
Sbjct: 1 MSGHNKWANIKHRKAAQDAKRSKIFTKLIRELTVAAKEGGDDPEANPRLRTAIEKAKDAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I AI+K ++ Y+E+ YEGY G AII+ +T+N+ RT +R+I +
Sbjct: 61 MPKDKIEAAIKKGAGGTDADS--YVEIMYEGYGPAGVAIIMRALTDNKNRTAQEVRHILS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL------ALEKGAEDFLIDKDNKIT 173
KNGG+L++ G+V + F+ ++ +P K + DL AL+ GAED + +D I
Sbjct: 119 KNGGSLAESGAVAWNFERKA-MITVP---KEEVADLDEFMMEALDAGAEDVI--EDETIQ 172
Query: 174 IITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKK 233
+I +P ++++++L+ GF ++S + P + +A K+ KL++ L+ D+++
Sbjct: 173 VIAAPEDMVQVRDTLKDKGFTVKAS-LTYIPKNTVKIAGSDAEKMLKLIDALEDSDDIQE 231
Query: 234 VYTNALIFD 242
V+ N I D
Sbjct: 232 VFANFEIDD 240
>gi|417845373|ref|ZP_12491402.1| UPF0082 protein [Haemophilus haemolyticus M21639]
gi|341955209|gb|EGT81670.1| UPF0082 protein [Haemophilus haemolyticus M21639]
Length = 246
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA+RGKI T+++REL A G N +LR A++KAL N
Sbjct: 1 MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDVSANPRLRAAVDKALSNN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVR-YEGYSVNGAAIIVDCITNNRMRTVSNIRNIF 118
+ ++ I RAI + + N+ E + YEGY G A++V+C+++N RT+S +R F
Sbjct: 61 MTRDTINRAIDRGVGGGDDTNM---ETKIYEGYGPGGTAVMVECLSDNANRTISQVRPSF 117
Query: 119 NKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
K GGNL EGSV ++F G L+ + ++ L + A+E GA+D D I T+
Sbjct: 118 TKCGGNLGTEGSVGYLFSKKG-LILIEQADEDALTEAAIEAGADDIQPQDDGSFEIYTAW 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
+++ +E GFK + + + M P T + A KL +L++ L+ DV+ VY N
Sbjct: 177 EYLGSVRDGIEAAGFKVQEAEVTMIPSTTVDLDIETAPKLLRLIDMLEDCDDVQNVYHNG 236
Query: 239 LIFD 242
I D
Sbjct: 237 EISD 240
>gi|93006305|ref|YP_580742.1| hypothetical protein Pcryo_1479 [Psychrobacter cryohalolentis K5]
gi|119391269|sp|Q1QAP5.1|Y1479_PSYCK RecName: Full=Probable transcriptional regulatory protein
Pcryo_1479
gi|92393983|gb|ABE75258.1| protein of unknown function DUF28 [Psychrobacter cryohalolentis K5]
Length = 249
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 150/239 (62%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANIK +K DA +GK+ T+I+RE+ A G+ +PD N +LR IEKAL N
Sbjct: 1 MAGHSKWANIKHRKARQDAVKGKVFTKIIREIVSAAKQGDPDPDKNPRLRAVIEKALSVN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ I RA+ + N+N++ EV YEGY + G A++V+ +T+N RTVS +R+ F
Sbjct: 61 MTRDTINRAVARGTGGDDNDNMD--EVSYEGYGIGGVAVLVETMTDNLNRTVSEVRHAFT 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
KN GNL GSV ++F G++ F + ++ ++ +AL+ GA D D ++ + +IT
Sbjct: 119 KNDGNLGTTGSVAYLFNKRGEISFNDTSLEDEVMLVALDAGALDIENDGES-LLVITEWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD-GEAIKLQKLLNELKKLHDVKKVYTN 237
F +K++L G ++++ + M P T+ + +A K+ K+++ L+ + DV++VY+N
Sbjct: 178 NFGHVKDALNAAGLVSDNAEVTMSPSTSAEIDNVADAEKVMKMIDMLEDIDDVQEVYSN 236
>gi|213621162|ref|ZP_03373945.1| hypothetical protein SentesTyp_28112 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 202
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 131/205 (63%), Gaps = 4/205 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWAN + +K DAKRGKI T+I+REL A G +PD N +LR A++KAL N
Sbjct: 1 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALANN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+ ++ + RAI + +E+ N + YEGY G AI+++C+++NR RTV+ +R+ F+
Sbjct: 61 MTRDTLNRAIARGVGG--DEDSNMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
K GGNL +GSV ++F G + F ++T+++ ALE GAED + D I + T+
Sbjct: 119 KCGGNLGTDGSVAYLFSKKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWE 177
Query: 180 KFIEIKNSLEMTGFKAESSGIVMRP 204
+ +++++LE G KA+S+ + M P
Sbjct: 178 EMGKVRDALEAAGLKADSAEVSMIP 202
>gi|399517453|ref|ZP_10759003.1| hypothetical protein Q5C_10070 [Leuconostoc pseudomesenteroides
4882]
gi|398647577|emb|CCJ67030.1| hypothetical protein Q5C_10070 [Leuconostoc pseudomesenteroides
4882]
Length = 240
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 134/243 (55%), Gaps = 9/243 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGKI ++ +L VA G +P+ N LRL +EKA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKIFQKLAHDLYVAAKAGGADPEMNASLRLVVEKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + EV YEGY G A++V+ T+N RTVS +RN F
Sbjct: 61 MPKDNIQRALDKASGA---GGAKFEEVTYEGYGTAGVAVLVEASTDNINRTVSTVRNSFK 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLF----LPNTKKNTLLDLALEKGAEDFLIDKDNKITII 175
GG L GSV F F G L P+ ++T+L+ ALE GAED D I
Sbjct: 118 HAGGALGTSGSVAFQFDRKGYLAIDREAYPDLDEDTVLEAALEAGAEDVQT-ADEVFEIY 176
Query: 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235
T P+ F ++ +L GF E + I M + D + KL L++EL++ DV VY
Sbjct: 177 TDPADFQAVEGALTEAGFVFEDAEITMIAQNPMTITDEDREKLDHLVDELEENEDVLAVY 236
Query: 236 TNA 238
T+A
Sbjct: 237 TSA 239
>gi|110597084|ref|ZP_01385373.1| Protein of unknown function DUF28 [Chlorobium ferrooxidans DSM
13031]
gi|110341275|gb|EAT59740.1| Protein of unknown function DUF28 [Chlorobium ferrooxidans DSM
13031]
Length = 250
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKWA IKRKK D KRG + T++++E+ +A G +P+ N +LRLAI+ A +
Sbjct: 1 MSGHSKWATIKRKKAATDQKRGSLFTKLVKEITIAAKMGGGDPNGNPRLRLAIDTARANS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RA++K + E + Y E+ YEGY G A+I++ T+NR RTV++IR+I +
Sbjct: 61 MPMDNIQRAVKKGTGEL--EGVTYDEITYEGYGPAGIALIIETATDNRNRTVADIRHIMS 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+N G+L + GSV +MF+ G + L + ++ L+++ L+ G ED D DN T+IT
Sbjct: 119 RNNGSLGESGSVAWMFQRKGTVDVLKSAADEDQLMEILLDAGLEDLSDDDDNYYTVITDV 178
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ ++K L+ E++ I + P I + +A K+ KL++ L+ D++ VY+N
Sbjct: 179 RQLEDVKKVLDEAAIAYENAKIDLLPENYIELEADDAEKVIKLIDALENNDDIQAVYSN 237
>gi|254557054|ref|YP_003063471.1| hypothetical protein JDM1_1887 [Lactobacillus plantarum JDM1]
gi|300768047|ref|ZP_07077953.1| glucose-1-phosphate adenylyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|380032985|ref|YP_004889976.1| YebC/PmpR family DNA-binding regulatory protein [Lactobacillus
plantarum WCFS1]
gi|418275780|ref|ZP_12891103.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448821760|ref|YP_007414922.1| putative transcriptional regulatory protein [Lactobacillus
plantarum ZJ316]
gi|33517009|sp|Q88V33.1|Y2253_LACPL RecName: Full=Probable transcriptional regulatory protein lp_2253
gi|254045981|gb|ACT62774.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
gi|300494396|gb|EFK29558.1| glucose-1-phosphate adenylyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|342242228|emb|CCC79462.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum WCFS1]
gi|376009331|gb|EHS82660.1| DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448275257|gb|AGE39776.1| putative transcriptional regulatory protein [Lactobacillus
plantarum ZJ316]
Length = 242
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGK+ +I REL +A+ G +PD+N +LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + NY EV YEGY G A++V +T+N+ RT + +R+ F
Sbjct: 61 MPKDNIKRAVDKGSGSGAE---NYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+GG L+ G+V +MF G ++ +T ++T+L L+ G +D L D I T
Sbjct: 118 HHGGALAATGAVSYMFDRKGYIVISREDLDTDEDTMLMDVLDAGGDD-LQSSDEAFEIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P + ++++LE G+K E++ + M P + KLQ +++EL+ DV +VY
Sbjct: 177 DPKQLAAVRDALEANGYKLETAELTMIPENLTDVPADKVEKLQHMIDELEDNDDVSEVYE 236
Query: 237 NA 238
A
Sbjct: 237 AA 238
>gi|227499848|ref|ZP_03929941.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
gi|227217957|gb|EEI83230.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
Length = 243
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 5/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
M+GH+KW+ IK KK DAK+GKI T+ R + VA G NPD N L+ AIEKA N
Sbjct: 1 MSGHNKWSKIKNKKGSEDAKKGKIFTKHARNITVAAKEGGTNPDYNPSLKTAIEKAKADN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+P +NI RAI+K + ++N ++ V YEGY G A+IVDC+T+N+ RT ++R+ F+
Sbjct: 61 MPNDNIERAIKKAAGDDASDN--FVRVIYEGYGPGGVAVIVDCLTDNKNRTAPDVRHAFD 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKK-NTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL +GSV+FMF+ G ++ N K + + ALE G ED + + IT
Sbjct: 119 KNGGNLGTDGSVMFMFERKGDIIVEKNGKDFDDFMMDALEAGCED-VKEMGEYFEAITDV 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
+ F + + L+ G+K ES+ I I + +KL KL++ L+ DV++VYTN
Sbjct: 178 ASFNDANDKLKEAGYKIESADISYLANNMISVSEEHVVKLNKLIDTLEDNDDVQEVYTN 236
>gi|86140043|ref|ZP_01058607.1| hypothetical protein MED193_21641 [Roseobacter sp. MED193]
gi|85823293|gb|EAQ43504.1| hypothetical protein MED193_21641 [Roseobacter sp. MED193]
Length = 246
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 6/239 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
MAGHSKWANI+ +K DA R K+ +++ +E+ VA G+ + D N +LRLA+++A +
Sbjct: 1 MAGHSKWANIQHRKGRQDAVRSKLFSKLAKEITVAAKMGDPDVDKNPRLRLAVKEAKSQS 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+ I RAI+K I + NY E+RYEGY NG A+IV+ +T+N+ RT S +R+ F+
Sbjct: 61 VPKDVIERAIKKA---IGGDAENYDEIRYEGYGPNGVAVIVETMTDNKNRTASTVRSTFS 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNT-KKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
KNGGNL + GSV FMF G++ + +T++ A+E GAED +D TI
Sbjct: 118 KNGGNLGETGSVGFMFDRKGEVTYKAEVGDADTVMMAAIEAGAEDVESTEDGH-TIYCED 176
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237
S ++ N+LE ++ES+ +V +P T KL KL++ L+ DV++V TN
Sbjct: 177 SDLNDVSNALEKELGESESTKLVWKPTTTTELDLEGMQKLMKLVDALEDDDDVQRVTTN 235
>gi|301060228|ref|ZP_07201095.1| DNA-binding regulatory protein, YebC/PmpR family [delta
proteobacterium NaphS2]
gi|300445740|gb|EFK09638.1| DNA-binding regulatory protein, YebC/PmpR family [delta
proteobacterium NaphS2]
Length = 248
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 150/244 (61%), Gaps = 5/244 (2%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW++IK KK DAKRGKI T++++E+ VA G +P+ N +LR AI A N
Sbjct: 1 MSGHSKWSSIKHKKGAADAKRGKIFTKLIKEITVAARMGGGDPEGNPRLRTAIAAAKAEN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK NI R I+K + E +NY E YEGY G+A++VDC+T+N+ R+V++I+++F
Sbjct: 61 MPKENIERGIKKGTGEL--EGVNYEEASYEGYGPGGSAVLVDCLTDNKNRSVADIKHLFE 118
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSP 178
+NGGNL + G V ++F+ G ++ + + L+DLALE GAED + +++ + ++T+P
Sbjct: 119 RNGGNLGEPGCVAWIFEQRGLIVLEKDQVDEEQLIDLALEAGAED-VKEEETEFEVVTAP 177
Query: 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
S F ++ +++ G + + P + + +A ++ L+ L+ DV VY N
Sbjct: 178 SDFEAVRKAIDDAGLPYTLAEVTKIPKNTVKVEGKKAQQMINLMQALEDHDDVSHVYANF 237
Query: 239 LIFD 242
I D
Sbjct: 238 DIAD 241
>gi|308181048|ref|YP_003925176.1| hypothetical protein LPST_C1866 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308046539|gb|ADN99082.1| hypothetical protein LPST_C1866 [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 242
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
M+GHSKW NI+ +K DAKRGK+ +I REL +A+ G +PD+N +LRL ++KA AN
Sbjct: 1 MSGHSKWHNIQGRKNAQDAKRGKVFQKISRELYMAVKAGGPDPDSNAQLRLVMDKAKAAN 60
Query: 60 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
+PK+NI RA+ K + + NY EV YEGY G A++V +T+N+ RT + +R+ F
Sbjct: 61 MPKDNIKRAVDKGSGSGAE---NYEEVTYEGYGPGGIAVLVHALTDNKNRTAAAVRSAFT 117
Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLP---NTKKNTLLDLALEKGAEDFLIDKDNKITIIT 176
+GG L+ G+V +MF G ++ +T ++T+L L+ G +D L D I T
Sbjct: 118 HHGGALAATGAVSYMFDRKGYIVISREDLDTDEDTMLIDVLDAGGDD-LQSSDEAFEIYT 176
Query: 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236
P + ++++LE G+K E++ + M P + KLQ +++EL+ DV +VY
Sbjct: 177 DPKQLAAVRDALEANGYKLETAELTMIPENLTDVPADKVEKLQHMIDELEDNDDVSEVYE 236
Query: 237 NA 238
A
Sbjct: 237 AA 238
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,702,529
Number of Sequences: 23463169
Number of extensions: 146879511
Number of successful extensions: 435809
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3948
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 422119
Number of HSP's gapped (non-prelim): 4319
length of query: 242
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 104
effective length of database: 9,121,278,045
effective search space: 948612916680
effective search space used: 948612916680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)