Query psy8853
Match_columns 242
No_of_seqs 119 out of 1047
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:03:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3q_A Transcriptional regulat 100.0 4E-100 1E-104 673.5 28.4 240 1-242 4-244 (247)
2 1lfp_A Hypothetical protein AQ 100.0 2E-98 7E-103 662.9 23.2 239 1-242 1-242 (249)
3 1kon_A Protein YEBC, YEBC; alp 100.0 1.1E-98 4E-103 664.5 20.9 239 1-242 4-243 (249)
4 1mw7_A Hypothetical protein HP 100.0 1.1E-93 3.7E-98 630.2 23.0 232 2-239 1-240 (240)
5 2jsx_A Protein NAPD; TAT, proo 88.0 0.35 1.2E-05 36.1 3.1 67 171-240 9-81 (95)
6 3lh2_S 4E10_1VI7A_S0_002_N (T8 86.7 0.67 2.3E-05 32.5 3.8 55 171-225 9-63 (76)
7 2lqj_A Mg2+ transport protein; 86.5 0.92 3.2E-05 33.7 4.7 68 171-238 10-87 (94)
8 2ko1_A CTR148A, GTP pyrophosph 86.4 1.3 4.3E-05 30.9 5.2 60 177-236 15-77 (88)
9 3t9z_A GLNK3, nitrogen regulat 80.2 4.5 0.00015 31.1 6.4 54 171-224 3-79 (118)
10 3ncq_A Nitrogen regulatory pro 78.7 5 0.00017 30.8 6.3 54 171-224 3-79 (119)
11 2cvi_A 75AA long hypothetical 75.1 4.8 0.00017 28.0 4.9 70 171-241 5-76 (83)
12 2f1f_A Acetolactate synthase i 73.4 6.4 0.00022 31.9 5.9 61 176-237 12-77 (164)
13 3l7p_A Putative nitrogen regul 73.2 6.1 0.00021 30.1 5.4 52 171-222 5-80 (115)
14 4aff_A Nitrogen regulatory pro 72.9 10 0.00035 28.8 6.7 52 171-222 3-77 (116)
15 3mhy_A PII-like protein PZ; PI 71.1 9 0.00031 28.8 5.9 52 171-222 3-77 (112)
16 1i1g_A Transcriptional regulat 70.6 6.3 0.00021 29.8 5.0 69 171-240 67-137 (141)
17 1yj7_A ESCJ; mixed alpha/beta, 70.5 17 0.00058 29.6 7.8 91 151-241 16-115 (171)
18 2pc6_A Probable acetolactate s 68.6 8.4 0.00029 31.3 5.6 61 176-237 13-78 (165)
19 2zbc_A 83AA long hypothetical 64.8 12 0.00042 25.4 5.2 69 171-240 5-75 (83)
20 2y9j_Y Lipoprotein PRGK, prote 60.9 59 0.002 26.2 9.3 91 151-241 14-113 (170)
21 1vi7_A Hypothetical protein YI 58.7 13 0.00046 31.5 5.2 53 171-225 141-195 (217)
22 2e1c_A Putative HTH-type trans 57.9 15 0.00051 29.3 5.2 67 172-239 91-158 (171)
23 2cyy_A Putative HTH-type trans 55.3 20 0.0007 27.5 5.4 67 172-239 71-138 (151)
24 2f06_A Conserved hypothetical 55.1 65 0.0022 24.3 10.3 94 100-197 9-102 (144)
25 2pn6_A ST1022, 150AA long hypo 52.9 17 0.00059 27.7 4.6 22 53-74 22-43 (150)
26 1owx_A Lupus LA protein, SS-B, 52.6 12 0.00041 28.8 3.6 29 92-122 15-44 (121)
27 2cve_A Hypothetical protein TT 49.3 32 0.0011 28.6 5.9 52 171-225 129-183 (191)
28 2dbb_A Putative HTH-type trans 49.1 19 0.00063 27.6 4.2 22 53-74 28-49 (151)
29 2q02_A Putative cytoplasmic pr 48.9 24 0.00082 28.9 5.2 80 146-228 18-97 (272)
30 3fyb_A Protein of unknown func 48.6 10 0.00035 28.6 2.4 21 214-234 14-34 (104)
31 3dxs_X Copper-transporting ATP 44.3 45 0.0015 21.5 5.1 46 152-197 19-69 (74)
32 4hac_A Mevalonate kinase; GHMP 44.0 55 0.0019 28.5 7.0 51 149-199 259-312 (321)
33 2djw_A Probable transcriptiona 43.6 10 0.00034 26.8 1.7 69 171-240 5-75 (92)
34 3lk7_A UDP-N-acetylmuramoylala 43.0 13 0.00044 34.2 2.8 59 49-115 284-342 (451)
35 2o35_A Hypothetical protein DU 42.6 13 0.00043 28.1 2.1 21 214-234 15-35 (105)
36 1hwu_A PII protein; herbaspiri 42.4 24 0.00084 26.1 3.8 54 171-224 3-79 (112)
37 3bzq_A Nitrogen regulatory pro 41.3 26 0.00089 26.0 3.8 55 171-225 5-83 (114)
38 2ns1_B Nitrogen regulatory pro 41.2 26 0.00089 26.2 3.8 56 171-226 7-86 (116)
39 3l23_A Sugar phosphate isomera 41.0 1.2E+02 0.004 25.7 8.6 77 148-228 30-120 (303)
40 1b0n_B Protein (SINI protein); 41.0 44 0.0015 22.4 4.5 36 40-75 7-42 (57)
41 1y7p_A Hypothetical protein AF 40.6 9 0.00031 32.8 1.2 56 177-236 14-78 (223)
42 2eg2_A Nitrogen regulatory pro 40.6 27 0.00093 25.8 3.8 54 171-224 3-79 (112)
43 2gw8_A PII signal transduction 38.6 30 0.001 25.7 3.8 56 171-226 5-84 (114)
44 2x5o_A UDP-N-acetylmuramoylala 38.3 15 0.00051 33.6 2.4 61 48-116 272-332 (439)
45 1gg4_A UDP-N-acetylmuramoylala 38.2 26 0.0009 32.1 4.1 62 48-117 286-347 (452)
46 2j9c_A GLNK1, hypothetical nit 37.2 32 0.0011 25.8 3.8 24 171-194 5-28 (119)
47 3dfe_A Putative PII-like signa 36.6 27 0.00091 26.3 3.2 59 171-229 8-89 (111)
48 1vfj_A Nitrogen regulatory pro 36.4 34 0.0012 25.4 3.8 54 171-224 3-79 (116)
49 3lmz_A Putative sugar isomeras 35.9 64 0.0022 26.4 5.8 52 147-199 30-81 (257)
50 1sfu_A 34L protein; protein/Z- 35.5 22 0.00074 25.3 2.3 27 49-75 30-56 (75)
51 2fgc_A Acetolactate synthase, 35.2 38 0.0013 28.2 4.2 60 176-236 38-102 (193)
52 2csu_A 457AA long hypothetical 35.0 39 0.0013 31.3 4.7 100 134-239 264-377 (457)
53 3c19_A Uncharacterized protein 33.8 40 0.0014 28.0 4.0 42 150-191 28-79 (186)
54 2cg4_A Regulatory protein ASNC 33.8 45 0.0015 25.4 4.2 22 53-74 27-48 (152)
55 3c7m_A Thiol:disulfide interch 33.7 82 0.0028 24.2 5.9 46 25-70 93-140 (195)
56 3vni_A Xylose isomerase domain 32.9 48 0.0016 27.5 4.6 49 147-197 17-65 (294)
57 1p65_A Nucleocapsid protein; v 32.3 30 0.001 24.1 2.5 26 109-134 24-51 (73)
58 1e8c_A UDP-N-acetylmuramoylala 32.3 56 0.0019 30.2 5.3 60 48-117 311-371 (498)
59 3hn7_A UDP-N-acetylmuramate-L- 31.4 47 0.0016 31.2 4.7 61 48-117 347-407 (524)
60 2p5v_A Transcriptional regulat 30.5 54 0.0018 25.3 4.2 24 52-75 28-51 (162)
61 3m05_A Uncharacterized protein 30.3 69 0.0023 24.4 4.6 52 171-222 8-65 (114)
62 2jsx_A Protein NAPD; TAT, proo 30.2 1.5E+02 0.0051 21.5 6.3 57 146-203 16-77 (95)
63 2am1_A SP protein, UDP-N-acety 30.1 56 0.0019 29.8 4.9 61 48-117 278-339 (454)
64 1ufw_A Synaptojanin 2; RNP dom 30.0 1.4E+02 0.0047 22.0 6.1 62 89-159 9-77 (95)
65 4h1h_A LMO1638 protein; MCCF-l 29.7 38 0.0013 29.9 3.5 64 171-237 14-85 (327)
66 3kws_A Putative sugar isomeras 29.6 1.5E+02 0.0052 24.3 7.2 85 137-228 27-116 (287)
67 3ff5_A PEX14P, peroxisomal bio 29.2 54 0.0018 21.8 3.3 41 32-72 13-54 (54)
68 3gon_A Phosphomevalonate kinas 29.0 51 0.0017 28.0 4.2 56 149-205 274-334 (335)
69 2o66_A PII protein; regulation 28.6 53 0.0018 25.5 3.8 54 171-224 15-92 (135)
70 3tva_A Xylose isomerase domain 28.1 62 0.0021 26.8 4.5 60 137-199 12-71 (290)
71 4e5s_A MCCFLIKE protein (BA_56 28.1 51 0.0017 29.3 4.1 55 179-236 30-84 (331)
72 2p5v_A Transcriptional regulat 27.9 44 0.0015 25.8 3.2 69 171-240 73-145 (162)
73 3o3m_B Beta subunit 2-hydroxya 27.6 72 0.0025 28.7 5.1 51 172-227 321-374 (385)
74 1sfl_A 3-dehydroquinate dehydr 27.1 1.4E+02 0.0049 24.9 6.6 73 151-235 87-162 (238)
75 3o1n_A 3-dehydroquinate dehydr 27.1 1.1E+02 0.0036 26.5 5.9 73 151-235 123-196 (276)
76 3sr3_A Microcin immunity prote 27.0 45 0.0015 29.7 3.5 63 171-236 15-85 (336)
77 1sd4_A Penicillinase repressor 26.7 1.2E+02 0.0041 21.7 5.4 17 177-193 41-57 (126)
78 1nq6_A XYS1; glycoside hydrola 26.6 1.1E+02 0.0038 26.2 6.0 54 177-235 213-266 (302)
79 2cz4_A Hypothetical protein TT 25.7 54 0.0018 24.9 3.3 24 171-194 27-50 (119)
80 2g0w_A LMO2234 protein; putati 25.5 41 0.0014 28.3 2.9 53 147-199 36-88 (296)
81 1j6u_A UDP-N-acetylmuramate-al 25.5 90 0.0031 28.6 5.4 55 48-112 282-339 (469)
82 3ctd_A Putative ATPase, AAA fa 25.4 42 0.0014 28.4 2.8 39 27-65 70-111 (213)
83 2yr1_A 3-dehydroquinate dehydr 25.3 1.4E+02 0.0048 25.3 6.3 72 151-235 104-176 (257)
84 3cny_A Inositol catabolism pro 25.3 93 0.0032 25.7 5.1 68 147-228 31-102 (301)
85 1uwv_A 23S rRNA (uracil-5-)-me 25.0 1.4E+02 0.0048 27.0 6.6 61 139-206 358-420 (433)
86 3plu_A Ubiquitin-like modifier 25.0 53 0.0018 24.1 3.0 33 170-202 32-66 (93)
87 1p3d_A UDP-N-acetylmuramate--a 24.9 2.4E+02 0.0082 25.6 8.2 65 48-117 296-363 (475)
88 3k17_A LIN0012 protein; protei 24.7 1.2E+02 0.004 26.9 5.9 51 149-200 297-351 (365)
89 3niy_A Endo-1,4-beta-xylanase; 24.7 78 0.0027 28.2 4.7 57 179-235 236-295 (341)
90 3obe_A Sugar phosphate isomera 24.2 2.6E+02 0.0087 23.6 7.8 52 148-199 37-96 (305)
91 1zl0_A Hypothetical protein PA 24.1 69 0.0023 28.3 4.1 63 171-236 19-86 (311)
92 3fry_A Probable copper-exporti 23.5 84 0.0029 20.3 3.6 42 153-196 23-66 (73)
93 3bge_A Predicted ATPase; struc 23.2 39 0.0013 28.4 2.2 39 27-65 42-83 (201)
94 1mwy_A ZNTA; open-faced beta-s 23.0 1.1E+02 0.0037 19.2 4.1 45 152-196 20-67 (73)
95 2kyz_A Heavy metal binding pro 22.9 1.1E+02 0.0039 18.8 4.1 34 160-195 27-61 (67)
96 1lva_A Selenocysteine-specific 22.6 70 0.0024 27.1 3.8 54 55-120 24-77 (258)
97 3cui_A EXO-beta-1,4-glucanase; 22.6 1.5E+02 0.005 25.7 6.0 57 177-234 211-270 (315)
98 2f00_A UDP-N-acetylmuramate--L 22.6 89 0.0031 28.8 4.8 63 48-115 297-364 (491)
99 1qbj_A Protein (double-strande 22.3 66 0.0023 22.6 3.0 41 29-75 12-54 (81)
100 2qul_A D-tagatose 3-epimerase; 22.2 1.3E+02 0.0043 24.6 5.3 78 147-228 17-100 (290)
101 3p6l_A Sugar phosphate isomera 22.0 1.4E+02 0.0048 24.2 5.5 53 147-199 22-83 (262)
102 2pn6_A ST1022, 150AA long hypo 21.9 29 0.001 26.3 1.1 68 172-240 67-138 (150)
103 1v0l_A Endo-1,4-beta-xylanase 21.8 1.1E+02 0.0036 26.9 4.9 50 178-235 215-264 (313)
104 2r9g_A AAA ATPase, central reg 21.5 34 0.0012 28.8 1.5 39 27-65 48-89 (204)
105 2epi_A UPF0045 protein MJ1052; 21.2 38 0.0013 25.0 1.6 43 197-241 35-81 (100)
106 3lfj_A Manxb, phosphotransfera 21.0 3.4E+02 0.012 22.1 8.1 50 171-224 100-157 (187)
107 1vk8_A Hypothetical protein TM 20.9 49 0.0017 24.9 2.1 51 182-241 36-90 (106)
108 3t41_A Epidermin leader peptid 20.6 1E+02 0.0035 28.0 4.7 59 170-238 45-104 (471)
109 2dnr_A Synaptojanin-1; RRM dom 20.3 2.5E+02 0.0086 20.3 6.7 60 91-159 3-68 (91)
No 1
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=100.00 E-value=4.1e-100 Score=673.49 Aligned_cols=240 Identities=40% Similarity=0.703 Sum_probs=226.3
Q ss_pred CCCcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCC
Q psy8853 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 79 (242)
Q Consensus 1 maGHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~ 79 (242)
|||||||+||||+|+++|++|+|+|+||+|+|++|||. ||||+.||+||.+|++||++||||++||||||||+|. .+
T Consensus 4 maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~--~~ 81 (247)
T 4f3q_A 4 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGS--GA 81 (247)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC--CC
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999986 46
Q ss_pred CcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhc
Q psy8853 80 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK 159 (242)
Q Consensus 80 ~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~ 159 (242)
+.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.++++.++|++||.|||+
T Consensus 82 ~~~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~~~~d~~~e~aiea 161 (247)
T 4f3q_A 82 GDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEV 161 (247)
T ss_dssp -CCCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred cCCceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999998878999999999999
Q ss_pred CCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccceeccc
Q psy8853 160 GAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239 (242)
Q Consensus 160 GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni~ 239 (242)
|||||++++||.|+|+|+|++|.+|+++|++.||++.++++.|+|+++|+|++|+++++++|+++|+++||||+||||++
T Consensus 162 GAeDv~~~edg~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~dDVq~Vy~N~~ 241 (247)
T 4f3q_A 162 GAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNAD 241 (247)
T ss_dssp TCSEEEECTTSCEEEEECGGGHHHHHHHHHHTTCCCSEEEEEEEESSCEECCHHHHHHHHHHHHHHHTSTTEEEEEECEE
T ss_pred CCceeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeEEEEEEecCCccccCHHHHHHHHHHHHHhhcCcCcceeeECCC
Confidence 99999998787899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy8853 240 IFD 242 (242)
Q Consensus 240 ~~~ 242 (242)
+||
T Consensus 242 ~~~ 244 (247)
T 4f3q_A 242 YPE 244 (247)
T ss_dssp CCG
T ss_pred CCc
Confidence 875
No 2
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=100.00 E-value=2e-98 Score=662.89 Aligned_cols=239 Identities=41% Similarity=0.632 Sum_probs=227.8
Q ss_pred CCCcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCC
Q psy8853 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 79 (242)
Q Consensus 1 maGHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~ 79 (242)
|||||||+||||+|+++|++|+|+|+||+|+|++|||. ||||+.||+||.+|++||++||||++||||||||+|. .+
T Consensus 1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~--~~ 78 (249)
T 1lfp_A 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGE--LE 78 (249)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSC--SS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC--Cc
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999997 46
Q ss_pred CcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCC-CChhHHHHHHHh
Q psy8853 80 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALE 158 (242)
Q Consensus 80 ~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~-~~~d~~~e~Aie 158 (242)
+.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+.++ .++|++||+|||
T Consensus 79 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~ale 158 (249)
T 1lfp_A 79 GEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIE 158 (249)
T ss_dssp SCCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHH
T ss_pred ccceEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHh
Confidence 7789999999999999999999999999999999999999999999999999999999999999864 799999999999
Q ss_pred cCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceec-CHHHHHHHHHHHHHHhcCCCcccceec
Q psy8853 159 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVF-KDGEAIKLQKLLNELKKLHDVKKVYTN 237 (242)
Q Consensus 159 ~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l-~~e~~~~~~~li~~Lee~dDV~~Vy~N 237 (242)
+|||||++ +++.|+|+|+|++|.+|+++|++.||++.++++.|+|+++|+| ++++++++.+|+++|+++||||+||||
T Consensus 159 aGAeDv~~-e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~~e~~~~~~klid~Led~DDVq~Vy~N 237 (249)
T 1lfp_A 159 VGAEDVQP-GEEVHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIAN 237 (249)
T ss_dssp HTCSEEEC-CSSEEEEEECGGGHHHHHHHHHTTTCCCSEEEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cCCceeec-CCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCCceecCCHHHHHHHHHHHHHHhcccChhhhhcC
Confidence 99999984 5668999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccCC
Q psy8853 238 ALIFD 242 (242)
Q Consensus 238 i~~~~ 242 (242)
++++|
T Consensus 238 ~~~~~ 242 (249)
T 1lfp_A 238 FEIPE 242 (249)
T ss_dssp EECCS
T ss_pred CCCCH
Confidence 99864
No 3
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=100.00 E-value=1.1e-98 Score=664.54 Aligned_cols=239 Identities=40% Similarity=0.685 Sum_probs=221.7
Q ss_pred CCCcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCC
Q psy8853 1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 79 (242)
Q Consensus 1 maGHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~ 79 (242)
|||||||+||||+|+++|++|+|+|+||+|+|++|||. ||||+.||+||.+|++||++||||++||||||||+|. .+
T Consensus 4 MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~--~~ 81 (249)
T 1kon_A 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGG--DD 81 (249)
T ss_dssp --CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC-------
T ss_pred cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCC--Cc
Confidence 89999999999999999999999999999999999999 8999999999999999999999999999999999987 46
Q ss_pred CcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhc
Q psy8853 80 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK 159 (242)
Q Consensus 80 ~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~ 159 (242)
+.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.+.+. ++|++||+|||+
T Consensus 82 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~~-~ed~~le~alea 160 (249)
T 1kon_A 82 DANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG-DEDTIMEAALEA 160 (249)
T ss_dssp -CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS-CHHHHHHHHHHH
T ss_pred ccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECCC-CHHHHHHHHHhC
Confidence 7789999999999999999999999999999999999999999999999999999999999999864 899999999999
Q ss_pred CCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccceeccc
Q psy8853 160 GAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239 (242)
Q Consensus 160 GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni~ 239 (242)
|||||+.++++.|+|+|+|++|.+|+++|++.||++.++++.|+|+++|+|++|+++++++|+++|+++||||+||||++
T Consensus 161 GAeDv~~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~DDVq~Vy~N~~ 240 (249)
T 1kon_A 161 GAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGE 240 (249)
T ss_dssp TCSEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEEEEEECCC
T ss_pred CCceeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCCceecCHHHHHHHHHHHHHHhcccChhhhhcCCC
Confidence 99999965667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy8853 240 IFD 242 (242)
Q Consensus 240 ~~~ 242 (242)
++|
T Consensus 241 ~~~ 243 (249)
T 1kon_A 241 ISD 243 (249)
T ss_dssp CCH
T ss_pred CCH
Confidence 763
No 4
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=100.00 E-value=1.1e-93 Score=630.21 Aligned_cols=232 Identities=29% Similarity=0.390 Sum_probs=204.9
Q ss_pred CCcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCC
Q psy8853 2 AGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNEN 80 (242)
Q Consensus 2 aGHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~ 80 (242)
|| |||+||||+|+++|++|+|+|+||+|+|++|||. ||||+.||+||.+|++||++||||++||||||||+|. +
T Consensus 1 aG-sKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~----~ 75 (240)
T 1mw7_A 1 MG-RAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK----E 75 (240)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST----T
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC----C
Confidence 69 9999999999999999999999999999999999 8999999999999999999999999999999999984 5
Q ss_pred cceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcC-ccccCCCccccccceeeEEEECC----C--CChhHHH
Q psy8853 81 INYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNG-GNLSKEGSVLFMFKHCGQLLFLP----N--TKKNTLL 153 (242)
Q Consensus 81 ~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~g-g~l~~~gsv~~~F~~kG~i~v~~----~--~~~d~~~ 153 (242)
.+|++++|||||||||+|||||||||+|||+++||++|+|+| |+||++|||+|||+|+|+|.+.+ . .++|++|
T Consensus 76 ~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~l 155 (240)
T 1mw7_A 76 GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLE 155 (240)
T ss_dssp CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHH
T ss_pred CCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHH
Confidence 689999999999999999999999999999999999999999 99999999999999999999985 2 6999999
Q ss_pred HHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCccc
Q psy8853 154 DLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKK 233 (242)
Q Consensus 154 e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~ 233 (242)
|+|||+|||||++ +++.|+|+|+|++|.+|+++|++.||++.++++.|+|+++|+|++|+++++++||++|+++||||+
T Consensus 156 e~aleaGAeDv~~-e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~DDVq~ 234 (240)
T 1mw7_A 156 FALIDYGLEELEE-VEDKIIIRGDYNSFKLLNEGFESLKLPILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVA 234 (240)
T ss_dssp HHHGGGTEEEEEE-ETTEEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCBCCCHHHHHHHHHHHHHHHTSTTEEE
T ss_pred HHHHHCCCceeec-CCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEeCCCCCcccCHHHHHHHHHHHHHHhcccCcch
Confidence 9999999999995 556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccc
Q psy8853 234 VYTNAL 239 (242)
Q Consensus 234 Vy~Ni~ 239 (242)
||||++
T Consensus 235 Vy~N~~ 240 (240)
T 1mw7_A 235 LYTNIE 240 (240)
T ss_dssp EEESBC
T ss_pred hhcCCC
Confidence 999974
No 5
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=87.97 E-value=0.35 Score=36.09 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=48.6
Q ss_pred eEEEEeCcccHHHHHHHHHHC-CCceeeceeeeecC--cceecCHHHHHHHHHHHHHHhcCCCccc---ceecccc
Q psy8853 171 KITIITSPSKFIEIKNSLEMT-GFKAESSGIVMRPY--TNIVFKDGEAIKLQKLLNELKKLHDVKK---VYTNALI 240 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~-g~~v~~sel~~~P~--~~v~l~~e~~~~~~~li~~Lee~dDV~~---Vy~Ni~~ 240 (242)
.+.|.|.|..+..|.++|.+. |.++..+ +-+. --|.+..+....+.+++++++.+|.|.+ ||++.+-
T Consensus 9 slvV~~~p~~~~~V~~~L~~ipgvEi~~~---~~~~GkiVV~iEa~~~~~l~~~i~~I~~i~GVlst~lvy~~~e~ 81 (95)
T 2jsx_A 9 SLVVQAKSERISDISTQLNAFPGCEVAVS---DAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEE 81 (95)
T ss_dssp EEEEEECTTSHHHHHHHHTTSTTEEEEEE---ETTTTEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESSCCCCC
T ss_pred EEEEEECCCCHHHHHHHHHCCCCeEEEEe---cCCCCCEEEEEEeCCHHHHHHHHHHHhcCCCccEEeEEEEEecc
Confidence 478999999999999999876 4433211 1122 2345677777888889999999999876 6777653
No 6
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=86.70 E-value=0.67 Score=32.50 Aligned_cols=55 Identities=11% Similarity=0.023 Sum_probs=37.6
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNEL 225 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~L 225 (242)
.|.+.|+...+..|+..|++.|+.+.+.+-.---.-.+.+++++.+.+...+..+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~ 63 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADF 63 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHH
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHH
Confidence 4899999999999999999999988766544332334556666655555444433
No 7
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=86.55 E-value=0.92 Score=33.68 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=49.3
Q ss_pred eEEEEeCcccHHHHHHHHHHC----CCceeeceeeeecCcceec------CHHHHHHHHHHHHHHhcCCCcccceecc
Q psy8853 171 KITIITSPSKFIEIKNSLEMT----GFKAESSGIVMRPYTNIVF------KDGEAIKLQKLLNELKKLHDVKKVYTNA 238 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~----g~~v~~sel~~~P~~~v~l------~~e~~~~~~~li~~Lee~dDV~~Vy~Ni 238 (242)
.+.++|++.+-..|+..|.+. +|.+.+-+..-++...|+| +..+-..++.++..|.-.|.|.+++=++
T Consensus 10 ~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~W~~ 87 (94)
T 2lqj_A 10 QVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYA 87 (94)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred EEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 467899999998888776544 7877665544444433543 2344568999999999999999998665
No 8
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=86.36 E-value=1.3 Score=30.88 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred CcccHHHHHHHHHHCCCceeeceeeeecC-cce--ecCHHHHHHHHHHHHHHhcCCCccccee
Q psy8853 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPY-TNI--VFKDGEAIKLQKLLNELKKLHDVKKVYT 236 (242)
Q Consensus 177 ~p~~~~~v~~~L~~~g~~v~~sel~~~P~-~~v--~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 236 (242)
.|--+..|...|.+.|+++.+........ ..+ .++-.+.+.+..++++|++.++|..|..
T Consensus 15 r~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~ 77 (88)
T 2ko1_A 15 KNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVER 77 (88)
T ss_dssp CTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEE
Confidence 47779999999999999997766543322 112 2222334678899999999999998854
No 9
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=80.19 E-value=4.5 Score=31.05 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=35.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---ee------------------eceeeeecCcceec--CHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AE------------------SSGIVMRPYTNIVF--KDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~------------------~sel~~~P~~~v~l--~~e~~~~~~~li~~ 224 (242)
.++.+..|..+..|+++|.+.|+. +. .-.+.++|+..+++ ++++.+.+...|-.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~ 79 (118)
T 3t9z_A 3 MVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVS 79 (118)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHH
Confidence 367888999999999999998775 21 11256788877775 77776665544443
No 10
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=78.65 E-value=5 Score=30.83 Aligned_cols=54 Identities=28% Similarity=0.420 Sum_probs=37.6
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---ee------------------eceeeeecCcceec--CHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AE------------------SSGIVMRPYTNIVF--KDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~------------------~sel~~~P~~~v~l--~~e~~~~~~~li~~ 224 (242)
.++.++.|..+..|+++|.+.|+. +. .-.+.++|+..+++ ++++.+.+...|-.
T Consensus 3 ~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~ 79 (119)
T 3ncq_A 3 KIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVN 79 (119)
T ss_dssp EEEEEECTTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHH
Confidence 367889999999999999999775 21 12256778777775 77776655444433
No 11
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=75.11 E-value=4.8 Score=28.04 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.1
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHHH-HHhcCCCcccceeccccC
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLLN-ELKKLHDVKKVYTNALIF 241 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li~-~Lee~dDV~~Vy~Ni~~~ 241 (242)
.+.+.|+|.....+.++|.+. -+|.++-...=+.+ .+.+--.+++.+.+|++ .|..+|.|.++.+.+-+.
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~-peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~~~l~~~~gV~~~~T~ivl~ 76 (83)
T 2cvi_A 5 FILMVTAAGKEREVMEKLLAM-PEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTSTMIAIL 76 (83)
T ss_dssp EEEEEECTTCHHHHHHHHHTS-TTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHhCC-CCeeEEEEEcccCCEEEEEEECCHHHHHHHHHHHhccCCCEeEEEEEEEEe
Confidence 467889999999999999875 23444433332333 23344456778888996 899999999998887543
No 12
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=73.38 E-value=6.4 Score=31.93 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=46.7
Q ss_pred eCcccHHHHHHHHHHCCCceeeceeeeecC---cce--ecCHHHHHHHHHHHHHHhcCCCcccceec
Q psy8853 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPY---TNI--VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237 (242)
Q Consensus 176 c~p~~~~~v~~~L~~~g~~v~~sel~~~P~---~~v--~l~~e~~~~~~~li~~Lee~dDV~~Vy~N 237 (242)
=.|--|+.|...|...||++.+-....... ..+ .++ .+...++.++..|+.++||.+|++-
T Consensus 12 NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d~~~leqI~kqL~Kl~dV~~V~r~ 77 (164)
T 2f1f_A 12 NESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GDEKVLEQIEKQLHKLVDVLRVSEL 77 (164)
T ss_dssp CCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred CCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-ccHHHHHHHHHHHcCCCCEEEEEEc
Confidence 468889999999999999998777654432 223 334 3357889999999999999999864
No 13
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=73.24 E-value=6.1 Score=30.07 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=35.3
Q ss_pred eEEEEeCcccHHHHHHHHHHCCC-c------ee---------------eceeeeecCcceec--CHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGF-K------AE---------------SSGIVMRPYTNIVF--KDGEAIKLQKLL 222 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~-~------v~---------------~sel~~~P~~~v~l--~~e~~~~~~~li 222 (242)
.++.++.|+.+..|+++|.+.|+ . +. .-.+.++|+..+++ ++++.+.+-..|
T Consensus 5 kI~AIIrp~kl~~Vk~AL~~~G~d~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pk~kieivV~d~~ve~vv~~I 80 (115)
T 3l7p_A 5 KIEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGNQRGYTEYVRGQKITPTLLAKVKVEIVAHDAAVEEMITTI 80 (115)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHTCGGGEEEEEEEEEC----------------CEEEEEEEEEEECGGGHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCccEEEEEEEeEcccCCCceeeccceeeecccceEEEEEEEcHHHHHHHHHHH
Confidence 36788899999999999998888 3 11 11245788887775 777766544444
No 14
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=72.94 E-value=10 Score=28.81 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=36.8
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---ee------------------eceeeeecCcceec--CHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AE------------------SSGIVMRPYTNIVF--KDGEAIKLQKLL 222 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~------------------~sel~~~P~~~v~l--~~e~~~~~~~li 222 (242)
.++.+..|..+..|+++|.+.|+. +. .-.+.++|+..+++ ++++.+.+...|
T Consensus 3 ~I~AIIrp~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I 77 (116)
T 4aff_A 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKI 77 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHH
Confidence 367889999999999999999765 21 11245788877775 777766554444
No 15
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=71.15 E-value=9 Score=28.84 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=35.6
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---ee------------------eceeeeecCcceec--CHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AE------------------SSGIVMRPYTNIVF--KDGEAIKLQKLL 222 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~------------------~sel~~~P~~~v~l--~~e~~~~~~~li 222 (242)
.++++..|+.+..|+++|.+.|+. +. .-.+.++|+..+++ ++++.+.+.+.|
T Consensus 3 ~I~aIIr~~kl~~vk~AL~~~G~~g~Tv~~v~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~v~~vv~~I 77 (112)
T 3mhy_A 3 LVMAIIKPFKLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDDQYEQVVEAI 77 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTCCCEEEEEEEEECTTTTCC---------CCCEEEEEEEEEECTTTHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEEEEeEccccCCcceeccceeeecccceEEEEEEEchHHHHHHHHHH
Confidence 367889999999999999998765 21 11245778877775 676665544443
No 16
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.65 E-value=6.3 Score=29.83 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=42.0
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHH-HHHhcCCCcccceecccc
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLL-NELKKLHDVKKVYTNALI 240 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li-~~Lee~dDV~~Vy~Ni~~ 240 (242)
.+.+.|+|..+..+.+.|.+.. ++..+...-=+.+ .+.+...+.+.+..|+ +.|...|+|.++.+.+-+
T Consensus 67 ~v~~~~~~~~~~~~~~~l~~~~-~v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ivl 137 (141)
T 1i1g_A 67 ITGVDTKPEKLFEVAEKLKEYD-FVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVCPAIIL 137 (141)
T ss_dssp EEEEEECGGGHHHHHHHHHHST-TEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEECS
T ss_pred EEEEEECchhHHHHHHHHhcCC-CeEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhhcCCCEeEEEEEEEE
Confidence 3556677778888888887752 2322211111112 2334445567778888 888888888888776644
No 17
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=70.52 E-value=17 Score=29.59 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCc-ceEeecCceEEEEeCcccHHHHHHHHHHCCCce-eeceee-eecCcceecCH-HHHHHHHH-----H
Q psy8853 151 TLLDLALEKGAE-DFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA-ESSGIV-MRPYTNIVFKD-GEAIKLQK-----L 221 (242)
Q Consensus 151 ~~~e~Aie~Gae-Dve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v-~~sel~-~~P~~~v~l~~-e~~~~~~~-----l 221 (242)
+++...-+.|.. +.+.+++|.+.|..+..++..++-.|...|++- ....++ +.+....-.++ ++..++.. |
T Consensus 16 ~i~~~L~~~gI~~~y~~~~~g~~~I~Vp~~~~~~ar~~La~~GLP~~~~~g~e~lf~~~~~g~T~~~e~~~~~~alegEL 95 (171)
T 1yj7_A 16 QMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKFADIEVIFPPSQLVASPSQENAKINYLKEQDI 95 (171)
T ss_dssp HHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCSCCCCCCHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCceEECCCCCEEEEeCHHHHHHHHHHHHHcCCCCCCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455555567875 777766777899999999999999999999964 234555 45655544444 23233332 4
Q ss_pred HHHHhcCCCcccceeccccC
Q psy8853 222 LNELKKLHDVKKVYTNALIF 241 (242)
Q Consensus 222 i~~Lee~dDV~~Vy~Ni~~~ 241 (242)
-..|+.++.|..---.+.+|
T Consensus 96 artI~~i~~V~~ARVhl~lP 115 (171)
T 1yj7_A 96 ERLLSKIPGVIDCSVSLNVN 115 (171)
T ss_dssp HHHHTTSTTEEEEEEEEEC-
T ss_pred HHHHHcCCCeeEEEEEEECC
Confidence 45678888887654444443
No 18
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=68.60 E-value=8.4 Score=31.30 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=46.5
Q ss_pred eCcccHHHHHHHHHHCCCceeeceeeeecC---cce--ecCHHHHHHHHHHHHHHhcCCCcccceec
Q psy8853 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPY---TNI--VFKDGEAIKLQKLLNELKKLHDVKKVYTN 237 (242)
Q Consensus 176 c~p~~~~~v~~~L~~~g~~v~~sel~~~P~---~~v--~l~~e~~~~~~~li~~Lee~dDV~~Vy~N 237 (242)
=.|--|..|...+...||+|.+-.+..... ..+ .++ .+...++.+...|+.+.||.+|++-
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d~~~leql~kQL~Kl~dV~~V~~~ 78 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GPDEIVEQITKQLNKLIEVVKLIDL 78 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-ECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-ccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 468889999999999999998877654332 223 233 3356888999999999999999863
No 19
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=64.79 E-value=12 Score=25.44 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=46.8
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHHH-HHhcCCCcccceecccc
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLLN-ELKKLHDVKKVYTNALI 240 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li~-~Lee~dDV~~Vy~Ni~~ 240 (242)
.+.+.|+|.....+.++|.+. -+|.++....=+.+ .+.+--.+.+.+..|+. .|..+|.|.++.+.+-+
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~-peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t~ivl 75 (83)
T 2zbc_A 5 IVLINTDAGGEDEVFERLKSM-SEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTLTMIIV 75 (83)
T ss_dssp EEEEEESTTCHHHHHHHHTTC-TTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEEEEECC
T ss_pred EEEEEEcCCCHHHHHHHHhCC-CCeEEEEEEeccCCEEEEEEECCHHHHHHHHHHHhcCCCCEeEEEEEEEE
Confidence 467889999999999999764 23444333222333 23344456677888885 89999999998887654
No 20
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=60.93 E-value=59 Score=26.22 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCc-ceEeecCceEEEEeCcccHHHHHHHHHHCCCce-eecee-eeecCcceecCH-HHHHHHHH-----H
Q psy8853 151 TLLDLALEKGAE-DFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA-ESSGI-VMRPYTNIVFKD-GEAIKLQK-----L 221 (242)
Q Consensus 151 ~~~e~Aie~Gae-Dve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v-~~sel-~~~P~~~v~l~~-e~~~~~~~-----l 221 (242)
+++...-+.|.. .+..+.++...|..+..++...+-.|...|++- ....+ +..+....-.++ ++..++.+ |
T Consensus 14 ~i~~~L~~~~I~y~~~~~~~~g~~I~Vp~~~~~~ar~~La~~GLP~~~~~g~~elf~~~~~g~T~~~e~~~~~rale~EL 93 (170)
T 2y9j_Y 14 EVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEKARLYSAIEQRL 93 (170)
T ss_dssp HHHHHHHHTTCCEEEEECTTSCEEEEECGGGHHHHHHHHHHTTCSCCCCCCTTCCTTTCSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCCCCeEEEECHHHHHHHHHHHHHcCCCCCCCCCHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455555566776 343332234899999999999999999999963 23344 446765555554 33344443 4
Q ss_pred HHHHhcCCCcccceeccccC
Q psy8853 222 LNELKKLHDVKKVYTNALIF 241 (242)
Q Consensus 222 i~~Lee~dDV~~Vy~Ni~~~ 241 (242)
-..|+.+|.|..--=.+.+|
T Consensus 94 artI~~i~gV~~ArVhl~lP 113 (170)
T 2y9j_Y 94 EQSLQTMEGVLSARVHISYD 113 (170)
T ss_dssp HHHHTTSTTEEEEEEEEEEC
T ss_pred HHHHHcCCCeeEEEEEEEcC
Confidence 44578888887654444443
No 21
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=58.69 E-value=13 Score=31.55 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=39.2
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc--ceecCHHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT--NIVFKDGEAIKLQKLLNEL 225 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~--~v~l~~e~~~~~~~li~~L 225 (242)
.+.|.|+...+..|...|++.++.+.+.+ |-..- .+.+++++.+.+...+..+
T Consensus 141 ~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~--y~~~V~~~l~v~~~~~~~~~~~l~~~ 195 (217)
T 1vi7_A 141 EYTLQCEYHQLTGIEALLGQCDGKIINSD--YQAFVLLRVALPAAKVAEFSAKLADF 195 (217)
T ss_dssp EEEEEECTTTHHHHHHHHHHTTCEEEEEE--ESSSEEEEEEECSSTHHHHHHHHHHH
T ss_pred EEEEEEccchHHHHHHHHHHCCCEEEceE--ecCCEEEEEEECHHHHHHHHHHHHHH
Confidence 58999999999999999999998876655 43322 3445677777766655554
No 22
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=57.90 E-value=15 Score=29.33 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=33.3
Q ss_pred EEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHHHHHhcCCCcccceeccc
Q psy8853 172 ITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239 (242)
Q Consensus 172 ~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni~ 239 (242)
+.+.|+|..+..+.+.|.+. -+|..+...-=+.+ .+.+--.+.+.+..|++.|...+.|.++.+.+-
T Consensus 91 v~v~~~~~~~~~v~~~l~~~-peV~~~~~vtG~~d~l~~v~~~d~~~l~~~l~~l~~~~gV~~~~t~iv 158 (171)
T 2e1c_A 91 ILVKVKAGKYSEVASNLAKY-PEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIV 158 (171)
T ss_dssp EEEEECTTCHHHHHHHHHTS-TTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHHSTTEEEEEEEEC
T ss_pred EEEEECcchHHHHHHHHhcC-cCeEEEEEeeCCCCEEEEEEECCHHHHHHHHHHHhcCCCcceEEEEEE
Confidence 44556666666666666543 12222221111222 122333444556666677777777776665543
No 23
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=55.27 E-value=20 Score=27.46 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred EEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHHHHHhcCCCcccceeccc
Q psy8853 172 ITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239 (242)
Q Consensus 172 ~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni~ 239 (242)
+.+.++|..+..+.+.|.+. -+|.++...-=+.+ .+.+--.+.+.+..|++.|..++.|.++.+.+-
T Consensus 71 v~v~~~~~~~~~~~~~l~~~-p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~~~~l~~~~gV~~~~t~iv 138 (151)
T 2cyy_A 71 ILVKVKAGKYSEVASNLAKY-PEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIV 138 (151)
T ss_dssp EEEEECTTCHHHHHHHHHTC-TTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred EEEEECcccHHHHHHHHhcC-CCeeEeeEecCCCCEEEEEEECCHHHHHHHHHHHhCCCCEeEEEEEEE
Confidence 44556666666666666653 12222221111222 122333444556666677777777766665543
No 24
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=55.15 E-value=65 Score=24.26 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=61.0
Q ss_pred EEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhcCCcceEeecCceEEEEeCcc
Q psy8853 100 VDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179 (242)
Q Consensus 100 ve~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~ 179 (242)
+.+.-.|+...++.|-.+|.++|-++-.- ++ ......|++.+. ..+.+.+.+..-+.|..-...+== .+.+--.|-
T Consensus 9 i~v~v~d~~G~l~~i~~~la~~~inI~~i-~~-~~~~~~~~~~~~-~~d~~~a~~~L~~~G~~v~~~svv-~v~~~d~pG 84 (144)
T 2f06_A 9 LSIFLENKSGRLTEVTEVLAKENINLSAL-CI-AENADFGILRGI-VSDPDKAYKALKDNHFAVNITDVV-GISCPNVPG 84 (144)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCCEEEE-EE-EECSSCEEEEEE-ESCHHHHHHHHHHTTCCEEEEEEE-EEEEESSTT
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCCEEEE-EE-EecCCCCEEEEE-eCCHHHHHHHHHHcCCeEeeeeEE-EEEeCCCCc
Confidence 34455778888999999999999876311 11 122333665554 236666666655678765433100 133455688
Q ss_pred cHHHHHHHHHHCCCceee
Q psy8853 180 KFIEIKNSLEMTGFKAES 197 (242)
Q Consensus 180 ~~~~v~~~L~~~g~~v~~ 197 (242)
-++.+.+.|.+.|++|..
T Consensus 85 vla~i~~~L~~~~InI~~ 102 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEY 102 (144)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHCCCCEEE
Confidence 999999999999999854
No 25
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=52.86 E-value=17 Score=27.67 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC
Q psy8853 53 EKALDANIPKNNIFRAIQKNNS 74 (242)
Q Consensus 53 ~~Ak~~nmPk~~Ie~AIkk~~g 74 (242)
+-|+..|++..++-+.|++-..
T Consensus 22 ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 22 EIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 3455667888888888876654
No 26
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.65 E-value=12 Score=28.78 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=24.1
Q ss_pred ccCCeEEEEEEecCC-cchhHHHHHHHhhhcC
Q psy8853 92 SVNGAAIIVDCITNN-RMRTVSNIRNIFNKNG 122 (242)
Q Consensus 92 gPgGv~iive~lTdN-~nRt~~~vr~~f~K~g 122 (242)
-|-|+.|.|.-+.++ . +..+|+.+|+++|
T Consensus 15 ~~~G~il~v~~l~~~~~--sredLke~F~~~G 44 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQT--CREDLHILFSNHG 44 (121)
T ss_dssp CCCCCEEEEEESCCSSC--CHHHHHHHTCSSC
T ss_pred ccCCeEEEEecCCCCcC--CHHHHHHHHHhcC
Confidence 478999999988888 5 4889999998864
No 27
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=49.34 E-value=32 Score=28.64 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=37.1
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecC-c--ceecCHHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPY-T--NIVFKDGEAIKLQKLLNEL 225 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~-~--~v~l~~e~~~~~~~li~~L 225 (242)
.+.|.|+...+..|...|++.+ .+.+.+ |-.. - .+.+++++.+.+...+..+
T Consensus 129 ~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~--y~~~gV~~~~~v~~~~~~~~~~~l~~~ 183 (191)
T 2cve_A 129 GLAFLVPFAEVGRVYALLEARA-LKAEET--YTPEGVRFALLLPKPEREGFLRALLDA 183 (191)
T ss_dssp EEEEEECGGGHHHHHHHHHHTT-CCEEEE--EETTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEEEchhhHHHHHHHHHHcC-ceeccE--EcCCeEEEEEEECHHHHHHHHHHHHHH
Confidence 5899999999999999999988 765554 4433 1 3445677766665555443
No 28
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=49.06 E-value=19 Score=27.60 Aligned_cols=22 Identities=32% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC
Q psy8853 53 EKALDANIPKNNIFRAIQKNNS 74 (242)
Q Consensus 53 ~~Ak~~nmPk~~Ie~AIkk~~g 74 (242)
+-|+..|++..++-+.|++-..
T Consensus 28 ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 28 ELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 3456778888888888887653
No 29
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=48.89 E-value=24 Score=28.94 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHH
Q psy8853 146 NTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNEL 225 (242)
Q Consensus 146 ~~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~L 225 (242)
..+.++.++.+-++|.+-||...+....-..+..++..+++.|++.|+.+.+....| |-+. .+++..+.+.+.++..
T Consensus 18 ~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~-~~~~--~~~~~~~~~~~~i~~a 94 (272)
T 2q02_A 18 GLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVY-PFNQ--LTEEVVKKTEGLLRDA 94 (272)
T ss_dssp TSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEET-TTTS--CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhh-ccCC--cHHHHHHHHHHHHHHH
Confidence 357899999999999998887422100001135788999999999999876554322 3221 1344556666666665
Q ss_pred hcC
Q psy8853 226 KKL 228 (242)
Q Consensus 226 ee~ 228 (242)
.++
T Consensus 95 ~~l 97 (272)
T 2q02_A 95 QGV 97 (272)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 30
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.64 E-value=10 Score=28.61 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCCcccc
Q psy8853 214 EAIKLQKLLNELKKLHDVKKV 234 (242)
Q Consensus 214 ~~~~~~~li~~Lee~dDV~~V 234 (242)
+...+.+|+.-|++..|||+|
T Consensus 14 eAAaFRrL~~HL~~r~DVQNI 34 (104)
T 3fyb_A 14 EAAAFRHLLRHLDEHKDVQNI 34 (104)
T ss_dssp HHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHHHHHHHHhCcchhHH
Confidence 456799999999999999987
No 31
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=44.30 E-value=45 Score=21.46 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=27.7
Q ss_pred HHHHHHh--cCCcceEee-cCceEEEEeCcc--cHHHHHHHHHHCCCceee
Q psy8853 152 LLDLALE--KGAEDFLID-KDNKITIITSPS--KFIEIKNSLEMTGFKAES 197 (242)
Q Consensus 152 ~~e~Aie--~GaeDve~~-ed~~~~~~c~p~--~~~~v~~~L~~~g~~v~~ 197 (242)
..+.++. -|+.++..+ ..+...|..++. +...+.+++++.||.+..
T Consensus 19 ~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 69 (74)
T 3dxs_X 19 SVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEI 69 (74)
T ss_dssp HHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEE
Confidence 3445554 266666553 234556655553 677888888888887543
No 32
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=44.00 E-value=55 Score=28.46 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=39.9
Q ss_pred hhHHHHHHHhcCCcceEeecCc---eEEEEeCcccHHHHHHHHHHCCCceeece
Q psy8853 149 KNTLLDLALEKGAEDFLIDKDN---KITIITSPSKFIEIKNSLEMTGFKAESSG 199 (242)
Q Consensus 149 ~d~~~e~Aie~GaeDve~~ed~---~~~~~c~p~~~~~v~~~L~~~g~~v~~se 199 (242)
.|++.+.|.++||-=.....-| ++..+|+++...++.+.|++.|+.+....
T Consensus 259 l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~g~~v~~~~ 312 (321)
T 4hac_A 259 LSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGAGGKVTITK 312 (321)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhCCCeEEEEE
Confidence 5788999999998877665433 67778899999999999999887654433
No 33
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=43.65 E-value=10 Score=26.83 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=45.8
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHH-HHHhcCCCcccceecccc
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLL-NELKKLHDVKKVYTNALI 240 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li-~~Lee~dDV~~Vy~Ni~~ 240 (242)
.+.+.|+|..+..+.+.|.+. -+|.++....=+.+ .+.+--.+.+.+.+|+ +.|..+|.|.++.+.+-+
T Consensus 5 ~v~v~~~~~~~~~~~~~l~~~-peV~~~~~vtG~~D~ll~v~~~d~~~l~~~l~~~l~~~~gV~~~~T~ivl 75 (92)
T 2djw_A 5 FVLIRPRGNRVQALGEAIAEL-PQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQGILSLEGVERTETLLAF 75 (92)
T ss_dssp EEEEEECGGGHHHHHHHHTTS-TTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHhcC-CCeEEEEEeecCCCEEEEEEECCHHHHHHHHHHhcccCCCEeEEEEEEEE
Confidence 467888999899999888764 23444443333333 2334344566778887 688999999988877643
No 34
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=42.98 E-value=13 Score=34.17 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHH
Q psy8853 49 RLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIR 115 (242)
Q Consensus 49 ~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr 115 (242)
.+|+.-|...++|.+.|.++|+...+- .+ -+|.+. ..+|+.+|.++.-.|+.-+..-++
T Consensus 284 laAia~a~~lgi~~~~i~~~L~~f~~~---~g-R~e~v~----~~~g~~vi~D~~a~np~a~~~al~ 342 (451)
T 3lk7_A 284 LATIAVAKLAGISNQVIRETLSNFGGV---KH-RLQSLG----KVHGISFYNDSKSTNILATQKALS 342 (451)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHCCCC---TT-SSEEEE----EETTEEEEECTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-cEEEEe----eeCCcEEEEeCCCCCHHHHHHHHH
Confidence 467788889999999999999998764 22 233221 247888999887777776666554
No 35
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=42.65 E-value=13 Score=28.12 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCCcccc
Q psy8853 214 EAIKLQKLLNELKKLHDVKKV 234 (242)
Q Consensus 214 ~~~~~~~li~~Lee~dDV~~V 234 (242)
+...+.+|+.-|.+..|||+|
T Consensus 15 eAAaFRRLv~HL~~r~DVQNI 35 (105)
T 2o35_A 15 EAAVFRRLLEHLRERSDVQNI 35 (105)
T ss_dssp HHHHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHHhCcchhHH
Confidence 456799999999999999987
No 36
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=42.42 E-value=24 Score=26.07 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=36.7
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eee------------------ceeeeecCcceec--CHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AES------------------SGIVMRPYTNIVF--KDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~------------------sel~~~P~~~v~l--~~e~~~~~~~li~~ 224 (242)
.+++++.|..+..|+++|.+.|+. +.+ -++.++|+..+++ ++++.+.+.+.|..
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 1hwu_A 3 QVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIK 79 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHH
Confidence 367899999999999999999764 311 1223467777764 77776654444443
No 37
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=41.26 E-value=26 Score=26.00 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=36.1
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eeec------------------eeeeecCcceec--CHHHHHHHHHHH-HHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AESS------------------GIVMRPYTNIVF--KDGEAIKLQKLL-NEL 225 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~s------------------el~~~P~~~v~l--~~e~~~~~~~li-~~L 225 (242)
.+++++.|..+..|+++|.+.|+. +.+. ++.++|+..+++ ++++.+.+.+.| +.+
T Consensus 5 ~I~aIIr~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~ 83 (114)
T 3bzq_A 5 LITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAA 83 (114)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHh
Confidence 377899999999999999999764 3110 124477777775 566655544444 444
No 38
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=41.23 E-value=26 Score=26.22 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=37.6
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eee------------------ceeeeecCcceec--CHHHHHHHHHHH-HHHh
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AES------------------SGIVMRPYTNIVF--KDGEAIKLQKLL-NELK 226 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~------------------sel~~~P~~~v~l--~~e~~~~~~~li-~~Le 226 (242)
.+++++.|..+..|+++|.+.|+. +.+ -++.++|+..+++ ++++.+.+.+.| +.+.
T Consensus 7 ~I~aIIr~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~ 86 (116)
T 2ns1_B 7 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAY 86 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhc
Confidence 478999999999999999999764 211 1233467777775 666665544444 4443
No 39
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=41.03 E-value=1.2e+02 Score=25.69 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=51.9
Q ss_pred ChhHHHHHHHhcCCcceEeec--CceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCccee--------cC----HH
Q psy8853 148 KKNTLLDLALEKGAEDFLIDK--DNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIV--------FK----DG 213 (242)
Q Consensus 148 ~~d~~~e~Aie~GaeDve~~e--d~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~--------l~----~e 213 (242)
+.++.++.+-++|.+-||... ++. . .+.+...+++.|++.|+.+.+....+.|..... +. ++
T Consensus 30 ~~~~~l~~~a~~G~~~VEl~~~~~~~---~-~~~~~~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 105 (303)
T 3l23_A 30 DVAANLRKVKDMGYSKLELAGYGKGA---I-GGVPMMDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPK 105 (303)
T ss_dssp CHHHHHHHHHHTTCCEEEECCEETTE---E-TTEEHHHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHH
T ss_pred CHHHHHHHHHHcCCCEEEeccccCcc---c-CCCCHHHHHHHHHHcCCeEEEEecccccccccCcccccccccchhhHHH
Confidence 688999999999999998732 221 1 345789999999999999877665554432111 11 23
Q ss_pred HHHHHHHHHHHHhcC
Q psy8853 214 EAIKLQKLLNELKKL 228 (242)
Q Consensus 214 ~~~~~~~li~~Lee~ 228 (242)
..+.+.+.++...++
T Consensus 106 ~~~~~~~~i~~A~~l 120 (303)
T 3l23_A 106 IMEYWKATAADHAKL 120 (303)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 355666777666555
No 40
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=40.95 E-value=44 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q psy8853 40 NNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSN 75 (242)
Q Consensus 40 ~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~ 75 (242)
..++.....-..|.+||+.||+.+-|..-+..-..+
T Consensus 7 ~~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp --CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC---
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccC
Confidence 356777888899999999999999999999866543
No 41
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=40.57 E-value=9 Score=32.85 Aligned_cols=56 Identities=7% Similarity=0.093 Sum_probs=39.1
Q ss_pred CcccHHHHHHHHHHCCCceeeceeeeecC---------cceecCHHHHHHHHHHHHHHhcCCCccccee
Q psy8853 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPY---------TNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236 (242)
Q Consensus 177 ~p~~~~~v~~~L~~~g~~v~~sel~~~P~---------~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 236 (242)
.|--|+.|...|.+.+.++..... .+|. -.++++ +. .+..++++|+.+++|.+|+.
T Consensus 14 RpGLLsDIt~vLAe~kiNIltIn~-~~~~kG~~ng~A~I~IEV~--d~-~Le~LL~kLrkI~gV~~V~R 78 (223)
T 1y7p_A 14 KIGVLRDLTTIIAEEGGNITFAQT-FLIKHGEHEGKALIYFEIE--GG-DFEKILERVKTFDYIIEIEE 78 (223)
T ss_dssp CTTHHHHHHHHCC----CEEEEEE-EECCSSTTTTEEEEEEEEC--SS-CHHHHHHHHHTCTTEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCceEEEE-EccccCCcCCEEEEEEEEC--CC-CHHHHHHHHhCCCCeeEEEE
Confidence 466789999999999888866665 4443 124454 34 89999999999999999985
No 42
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=40.56 E-value=27 Score=25.85 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=36.2
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eeec------------------eeeeecCcceec--CHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AESS------------------GIVMRPYTNIVF--KDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~s------------------el~~~P~~~v~l--~~e~~~~~~~li~~ 224 (242)
.++.++.|..+..|+++|.+.|+. +.+. ++.++|+..+++ ++++.+.+.+.|..
T Consensus 3 ~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 2eg2_A 3 KIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVK 79 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHH
Confidence 367899999999999999999764 3211 123467766664 77776665554433
No 43
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=38.58 E-value=30 Score=25.71 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=37.3
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eeec------------------eeeeecCcceec--CHHHHHHHHHHH-HHHh
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AESS------------------GIVMRPYTNIVF--KDGEAIKLQKLL-NELK 226 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~s------------------el~~~P~~~v~l--~~e~~~~~~~li-~~Le 226 (242)
.+++++.|..+..|+++|.+.|+. +.+. ++.++|+..+++ ++++.+.+.+.| +.+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~ 84 (114)
T 2gw8_A 5 KIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVAR 84 (114)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhC
Confidence 377899999999999999999764 3111 124467777775 666666544444 4443
No 44
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=38.27 E-value=15 Score=33.57 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRN 116 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~ 116 (242)
..+|+.-|...++|.+.|.++|+...+- .+ -++.+. ..+|+.+|.++.-.|+.-+..-++.
T Consensus 272 alaA~a~~~~lgi~~~~i~~~L~~f~~~---~g-R~e~~~----~~~~~~vi~Ds~a~np~a~~~al~~ 332 (439)
T 2x5o_A 272 ALAALALADAAGLPRASSLKALTTFTGL---PH-RFEVVL----EHNGVRWINDSKATNVGSTEAALNG 332 (439)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCC---TT-SSEEEE----EETTEEEEECTTCCSHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-ceEEEE----EECCEEEEEeCCCCCHHHHHHHHHh
Confidence 4467777888999999999999998764 22 333332 1357888888877777766666654
No 45
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=38.20 E-value=26 Score=32.08 Aligned_cols=62 Identities=6% Similarity=0.074 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNI 117 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~ 117 (242)
+.+|+.-|...++|.+.|.++|+...+- .+ -++.+. .++|+.+|.++.-.|+.-+..-++.+
T Consensus 286 alaA~a~~~~lgi~~~~i~~~L~~~~~~---~g-R~e~~~----~~~~~~vidDsyahnp~s~~~~l~~l 347 (452)
T 1gg4_A 286 ALAAAALSMSVGATLDAIKAGLANLKAV---PG-RLFPIQ----LAENQLLLDDSYNANVGSMTAAVQVL 347 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTCCCC---TT-SSEEEE----EETTEEEEECCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-CceEEE----CCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3467888889999999999999987654 22 344332 23578899998888887666666554
No 46
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=37.19 E-value=32 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.4
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK 194 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~ 194 (242)
.+++++.|..+..|+++|.+.|+.
T Consensus 5 ~I~aII~~~~~~~v~~aL~~~G~~ 28 (119)
T 2j9c_A 5 KVEAIIRPEKLEIVKKALSDAGYV 28 (119)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHHCCCC
Confidence 377899999999999999999774
No 47
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=36.57 E-value=27 Score=26.33 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=37.2
Q ss_pred eEEEEeCcccHHHHHHHHHHC---CCceee------------ce---eeeecCcceec---CHHHHHHHHH-HHHHH-hc
Q psy8853 171 KITIITSPSKFIEIKNSLEMT---GFKAES------------SG---IVMRPYTNIVF---KDGEAIKLQK-LLNEL-KK 227 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~---g~~v~~------------se---l~~~P~~~v~l---~~e~~~~~~~-li~~L-ee 227 (242)
.+++++.|..+..|+++|.+. ||+|.. .+ ..+.|+-.+++ +++..+.+.. +.+.+ ..
T Consensus 8 kIeaIi~p~kl~~V~~aL~~~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~vv~~I~~~~~t~ 87 (111)
T 3dfe_A 8 KLVIVTEKVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFTD 87 (111)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHHHHHHHHHhhCC
Confidence 488999999999999999998 455411 11 24678776664 4777776644 44544 44
Q ss_pred CC
Q psy8853 228 LH 229 (242)
Q Consensus 228 ~d 229 (242)
.+
T Consensus 88 ~~ 89 (111)
T 3dfe_A 88 YA 89 (111)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 48
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=36.40 E-value=34 Score=25.44 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=36.4
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eeec------------------eeeeecCcceec--CHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AESS------------------GIVMRPYTNIVF--KDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~s------------------el~~~P~~~v~l--~~e~~~~~~~li~~ 224 (242)
.+++++.|..+..|+++|.+.|+. +.+. ++.++|+..+++ ++++.+.+.+.|..
T Consensus 3 ~I~aII~~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~ 79 (116)
T 1vfj_A 3 LIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILK 79 (116)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHH
Confidence 377899999999999999999764 3211 123366666664 77776665544443
No 49
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=35.88 E-value=64 Score=26.37 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=39.5
Q ss_pred CChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeece
Q psy8853 147 TKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSG 199 (242)
Q Consensus 147 ~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~se 199 (242)
.+.+++++.+-++|.+-||..... +.+-.++.++..+++.|++.|+++....
T Consensus 30 ~~~~~~l~~~~~~G~~~vEl~~~~-~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 81 (257)
T 3lmz_A 30 FDLDTTLKTLERLDIHYLCIKDFH-LPLNSTDEQIRAFHDKCAAHKVTGYAVG 81 (257)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTT-SCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHhCCCEEEEeccc-CCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 478999999999999999885331 1112356778999999999999876544
No 50
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=35.51 E-value=22 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCC
Q psy8853 49 RLAIEKALDANIPKNNIFRAIQKNNSN 75 (242)
Q Consensus 49 ~~ai~~Ak~~nmPk~~Ie~AIkk~~g~ 75 (242)
.+|.+-||+.|+||.+|.|+|-+-...
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKE 56 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 467888999999999999999877653
No 51
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=35.23 E-value=38 Score=28.21 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=44.3
Q ss_pred eCcccHHHHHHHHHHCCCceeeceeeeecC---ccee--cCHHHHHHHHHHHHHHhcCCCccccee
Q psy8853 176 TSPSKFIEIKNSLEMTGFKAESSGIVMRPY---TNIV--FKDGEAIKLQKLLNELKKLHDVKKVYT 236 (242)
Q Consensus 176 c~p~~~~~v~~~L~~~g~~v~~sel~~~P~---~~v~--l~~e~~~~~~~li~~Lee~dDV~~Vy~ 236 (242)
=.|--|..|...+...||+|.+-.+..... ..+. ++.+ -..++.|...|..+.||.+|.+
T Consensus 38 N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-e~~ieqL~kQL~KLidVikV~d 102 (193)
T 2fgc_A 38 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-DKTIEQIEKQAYKLVEVVKVTP 102 (193)
T ss_dssp CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-TTHHHHHHHHHTTSTTEEEEEE
T ss_pred CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-HHHHHHHHHHhcCcCceEEEEE
Confidence 478899999999999999998766654333 2232 3322 3577888889999999999875
No 52
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=35.03 E-value=39 Score=31.29 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=61.9
Q ss_pred ccceeeEEEECCCCChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHH-HHHHHHHCCCceee--ce----e------
Q psy8853 134 MFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIE-IKNSLEMTGFKAES--SG----I------ 200 (242)
Q Consensus 134 ~F~~kG~i~v~~~~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~-v~~~L~~~g~~v~~--se----l------ 200 (242)
+|.|.|++.+. +.+++++.+.-..- ..-.++.+-+++.---+.. ..+.++..|+++-. .+ |
T Consensus 264 afRqaGv~~v~---~~~El~~~~~~l~~---~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~ 337 (457)
T 2csu_A 264 AFKQSGVLVAN---TIDEMLSMARAFSQ---PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPP 337 (457)
T ss_dssp HHHHTTCEEES---SHHHHHHHHTTTTS---CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCT
T ss_pred HHHhCCCeEEC---CHHHHHHHHHHhcC---CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCcc
Confidence 45556655544 34454443332222 1112345777777766644 57788888887521 00 0
Q ss_pred eeecCcceecC-HHHHHHHHHHHHHHhcCCCcccceeccc
Q psy8853 201 VMRPYTNIVFK-DGEAIKLQKLLNELKKLHDVKKVYTNAL 239 (242)
Q Consensus 201 ~~~P~~~v~l~-~e~~~~~~~li~~Lee~dDV~~Vy~Ni~ 239 (242)
.+-|.|++++. +-+.+.+.+.++.+-++|+|.-|.-|+.
T Consensus 338 ~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~ 377 (457)
T 2csu_A 338 MAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICV 377 (457)
T ss_dssp TCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEE
T ss_pred ccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 15578999994 3456788999999999999998887764
No 53
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=33.77 E-value=40 Score=28.02 Aligned_cols=42 Identities=2% Similarity=0.010 Sum_probs=34.1
Q ss_pred hHHHHHHHh-cCCcceEeec----C---c-eEEEEeCc-ccHHHHHHHHHHC
Q psy8853 150 NTLLDLALE-KGAEDFLIDK----D---N-KITIITSP-SKFIEIKNSLEMT 191 (242)
Q Consensus 150 d~~~e~Aie-~GaeDve~~e----d---~-~~~~~c~p-~~~~~v~~~L~~~ 191 (242)
--++|..++ +||-||-... . | .+.++|+| ++...+.+.|-..
T Consensus 28 g~~~e~L~~~aGAlDV~~tPi~MKKnRPg~~L~VLc~~~e~~e~l~~iif~e 79 (186)
T 3c19_A 28 GDAIQKLIEREEVLACHAVPCVTKKNRPGHVLVVLVDGGEDPDRVAEDVARD 79 (186)
T ss_dssp HHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCeEEEeeeceEeCCCceEEEEEEECCcccHHHHHHHHHhh
Confidence 457999999 9999997632 2 2 58899999 9999999987655
No 54
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=33.76 E-value=45 Score=25.41 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC
Q psy8853 53 EKALDANIPKNNIFRAIQKNNS 74 (242)
Q Consensus 53 ~~Ak~~nmPk~~Ie~AIkk~~g 74 (242)
+-|+..|++..++-+-|++-..
T Consensus 27 ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 27 ELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 3355667888888888877653
No 55
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=33.74 E-value=82 Score=24.24 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHH
Q psy8853 25 CTRIMRELRVAINF-GNNPDTNIKLRLAIEK-ALDANIPKNNIFRAIQ 70 (242)
Q Consensus 25 f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~-Ak~~nmPk~~Ie~AIk 70 (242)
+..+...+..|.-. |.|......|+.+++. |++.|++.+.+++++.
T Consensus 93 ~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~ 140 (195)
T 3c7m_A 93 FKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALK 140 (195)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHc
Confidence 45667788888777 7777667778888777 8889999999988874
No 56
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=32.92 E-value=48 Score=27.53 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=38.1
Q ss_pred CChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceee
Q psy8853 147 TKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAES 197 (242)
Q Consensus 147 ~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~ 197 (242)
.+.++.++.+-++|.+-||..... + .-.++.++..+++.|++.|+.+..
T Consensus 17 ~~~~~~l~~~~~~G~~~vEl~~~~-~-~~~~~~~~~~~~~~l~~~gl~i~~ 65 (294)
T 3vni_A 17 ADYKYYIEKVAKLGFDILEIAASP-L-PFYSDIQINELKACAHGNGITLTV 65 (294)
T ss_dssp CCHHHHHHHHHHHTCSEEEEESTT-G-GGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHHHHHcCCCEEEecCcc-c-CCcCHHHHHHHHHHHHHcCCeEEE
Confidence 368899999999999998885332 1 012577889999999999998865
No 57
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=32.30 E-value=30 Score=24.07 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=21.5
Q ss_pred hhHHHHHHHhhhcCc--cccCCCccccc
Q psy8853 109 RTVSNIRNIFNKNGG--NLSKEGSVLFM 134 (242)
Q Consensus 109 Rt~~~vr~~f~K~gg--~l~~~gsv~~~ 134 (242)
-+.+.|+++||.-+| +|.++|.++|.
T Consensus 24 lcl~SiqTafNQGaGt~sLs~SG~isf~ 51 (73)
T 1p65_A 24 LCLSSIQTAFNQGAGTCTLSDSGRISYT 51 (73)
T ss_dssp HHHHHHHHHHHHTCSEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhCCCceEEeccCCceeEE
Confidence 478899999999877 78888887764
No 58
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=32.29 E-value=56 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEec-cCCeEEEEEEecCCcchhHHHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYS-VNGAAIIVDCITNNRMRTVSNIRNI 117 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~g-PgGv~iive~lTdN~nRt~~~vr~~ 117 (242)
+.+|+.-|...++|.+.|.++|+...+- .+ -+ |... .+|+.+|++ .-.|+.-+..-++.+
T Consensus 311 alaAia~~~~lGi~~~~i~~~L~~~~~~---~g-R~-----e~v~~~~~~~vi~D-yahnP~s~~a~l~~l 371 (498)
T 1e8c_A 311 LLLALATLLALGYPLADLLKTAARLQPV---CG-RM-----EVFTAPGKPTVVVD-YAHTPDALEKALQAA 371 (498)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCCC---TT-SS-----EEECCTTSCEEEEE-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-ce-----EEEEcCCCCEEEEE-CCCCHHHHHHHHHHH
Confidence 4567788888999999999999988754 22 23 3333 357899999 777876655555544
No 59
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=31.41 E-value=47 Score=31.16 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNI 117 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~ 117 (242)
..+|+.-|...++|.+.|.++|+...+- .+ -++.+. ..+|+.+|+|+- .|+.-..+-++.+
T Consensus 347 alaA~a~~~~lgi~~~~i~~~L~~~~~~---~g-R~e~~~----~~~g~~vi~D~a-hnp~~~~a~l~~l 407 (524)
T 3hn7_A 347 ALVAIAAAYNIGVSVKTACAALSAFAGI---KR-RMELIG----DVNDILVFDDFA-HHPTAITTTLDGA 407 (524)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCCB---TT-SSEEEE----EETTEEEEEECC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---Cc-eEEEEE----ecCCcEEEEECC-CCHHHHHHHHHHH
Confidence 3467788899999999999999988764 22 233221 247899999995 6765554444443
No 60
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=30.48 E-value=54 Score=25.28 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=18.1
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC
Q psy8853 52 IEKALDANIPKNNIFRAIQKNNSN 75 (242)
Q Consensus 52 i~~Ak~~nmPk~~Ie~AIkk~~g~ 75 (242)
-+-|+..|++..++-+-|++-...
T Consensus 28 ~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 28 VELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566789999999999887643
No 61
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=30.25 E-value=69 Score=24.36 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=32.5
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceee-cee-eee--cCcceec--CHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAES-SGI-VMR--PYTNIVF--KDGEAIKLQKLL 222 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~-sel-~~~--P~~~v~l--~~e~~~~~~~li 222 (242)
.++-+..|.++..|+++|.+.||.... ++. .|. .++.+++ ++++.+.+...|
T Consensus 8 lI~AIIrp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I 65 (114)
T 3m05_A 8 LVIAIVQDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEII 65 (114)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHH
Confidence 366678899999999999999987422 222 222 2344543 666666544444
No 62
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=30.17 E-value=1.5e+02 Score=21.49 Aligned_cols=57 Identities=7% Similarity=0.179 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHhc-CCcceEe-e-cCceEEEEeCcccHHHHHHHHHHC-CCc-eeeceeeee
Q psy8853 146 NTKKNTLLDLALEK-GAEDFLI-D-KDNKITIITSPSKFIEIKNSLEMT-GFK-AESSGIVMR 203 (242)
Q Consensus 146 ~~~~d~~~e~Aie~-GaeDve~-~-ed~~~~~~c~p~~~~~v~~~L~~~-g~~-v~~sel~~~ 203 (242)
+..++++.+..... |+ ++-. + ++|.+.+..+-.+...+.+.+.+. .++ |.++.+.|-
T Consensus 16 p~~~~~V~~~L~~ipgv-Ei~~~~~~~GkiVV~iEa~~~~~l~~~i~~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 16 SERISDISTQLNAFPGC-EVAVSDAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVYH 77 (95)
T ss_dssp TTSHHHHHHHHTTSTTE-EEEEEETTTTEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESSC
T ss_pred CCCHHHHHHHHHCCCCe-EEEEecCCCCCEEEEEEeCCHHHHHHHHHHHhcCCCccEEeEEEE
Confidence 34667776666554 77 5533 3 367899999999999999988765 454 788887775
No 63
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=30.12 E-value=56 Score=29.76 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEec-cCCeEEEEEEecCCcchhHHHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYS-VNGAAIIVDCITNNRMRTVSNIRNI 117 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~g-PgGv~iive~lTdN~nRt~~~vr~~ 117 (242)
+.+|+.-|...++|.+.|.++|+...+- .+ -++ -.. ++|+.+|-++.-.|+.-+..-++.+
T Consensus 278 alaA~a~~~~lgi~~~~i~~~L~~~~~~---~g-R~e-----~~~~~~~~~iiDDsyahnp~s~~~~l~~l 339 (454)
T 2am1_A 278 AMIASYVALQEGVSEEQIRLAFQHLELT---RN-RTE-----WKKAANGADILSDVYNANPTAMKLILETF 339 (454)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCCC---CC-CSC-----EECCTTTCEEEEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCc---cC-Cee-----EEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4567778888999999999999988754 22 233 333 3567777777777877666655554
No 64
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.95 E-value=1.4e+02 Score=21.98 Aligned_cols=62 Identities=10% Similarity=-0.035 Sum_probs=42.8
Q ss_pred EEeccCCeEEEEEEecCC-------cchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhc
Q psy8853 89 EGYSVNGAAIIVDCITNN-------RMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK 159 (242)
Q Consensus 89 Eg~gPgGv~iive~lTdN-------~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~ 159 (242)
.-+||.+-.|+|-.+.++ ..-.+.+|...|..+| . .-.+++.-++ |.|++... +-...||+.
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~---Vilvr~v~d~-~fVtF~d~----~sAl~AI~l 77 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-T---IVLVRINQGQ-MLVTFADS----HSALSVLDV 77 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-C---CSEEEEETTE-EEEECSCS----HHHHHHHHG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-C---EEEEEEecCc-EEEEEcCh----HHHHHHHhc
Confidence 346999999999998643 4446788999999887 2 2356666565 99998732 334456653
No 65
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.66 E-value=38 Score=29.95 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=43.7
Q ss_pred eEEEEeCc--------ccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccceec
Q psy8853 171 KITIITSP--------SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTN 237 (242)
Q Consensus 171 ~~~~~c~p--------~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~N 237 (242)
++-|+++. ..+....+.|++.||+|......+.-... ++..+.++...|.+++. +|+|..|+.-
T Consensus 14 ~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~--~agtd~~Ra~dL~~a~~-Dp~i~aI~~~ 85 (327)
T 4h1h_A 14 EIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCM--MSSSIRSRVADIHEAFN-DSSVKAILTV 85 (327)
T ss_dssp EEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTT--SSCCHHHHHHHHHHHHH-CTTEEEEEES
T ss_pred EEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCc--ccCCHHHHHHHHHHHhh-CCCCCEEEEc
Confidence 56677654 34667788899999998766544433332 55556668888888876 4788888763
No 66
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=29.65 E-value=1.5e+02 Score=24.34 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=53.9
Q ss_pred eeeEEEECC-CCChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHH-
Q psy8853 137 HCGQLLFLP-NTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE- 214 (242)
Q Consensus 137 ~kG~i~v~~-~~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~- 214 (242)
+.|+-...- ..+.++.++.+-++|.+-||..-.. .+.++..+++.|++.|+.+...... .|.+....+++.
T Consensus 27 klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~------~~~~~~~~~~~l~~~gl~v~~~~~~-~~~~l~~~d~~~r 99 (287)
T 3kws_A 27 KLSFQEGIAPGESLNEKLDFMEKLGVVGFEPGGGG------LAGRVNEIKQALNGRNIKVSAICAG-FKGFILSTDPAIR 99 (287)
T ss_dssp EEEEETTSSCCSSHHHHHHHHHHTTCCEEECBSTT------CGGGHHHHHHHHTTSSCEECEEECC-CCSCTTBSSHHHH
T ss_pred eEEEEecccCCCCHHHHHHHHHHcCCCEEEecCCc------hHHHHHHHHHHHHHcCCeEEEEecC-CCCcCCCCCHHHH
Confidence 455443221 2578999999999999988874332 2678999999999999987544321 222333334432
Q ss_pred ---HHHHHHHHHHHhcC
Q psy8853 215 ---AIKLQKLLNELKKL 228 (242)
Q Consensus 215 ---~~~~~~li~~Lee~ 228 (242)
.+.+.+.++....+
T Consensus 100 ~~~~~~~~~~i~~a~~l 116 (287)
T 3kws_A 100 KECMDTMKEIIAAAGEL 116 (287)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34556666665555
No 67
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=29.20 E-value=54 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy8853 32 LRVAINFGNNPD-TNIKLRLAIEKALDANIPKNNIFRAIQKN 72 (242)
Q Consensus 32 I~~Avk~G~dP~-~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~ 72 (242)
|..|++-=.||. .|.-|..-++==++.|+..+-|+.|++|+
T Consensus 13 i~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 13 IATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 566777611332 35557788888889999999999999985
No 68
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=29.04 E-value=51 Score=28.00 Aligned_cols=56 Identities=11% Similarity=-0.032 Sum_probs=36.2
Q ss_pred hhHHHHHHHhcCCcceEeec---CceEEEEe-CcccHHHHHHHHHHCCCcee-eceeeeecC
Q psy8853 149 KNTLLDLALEKGAEDFLIDK---DNKITIIT-SPSKFIEIKNSLEMTGFKAE-SSGIVMRPY 205 (242)
Q Consensus 149 ~d~~~e~Aie~GaeDve~~e---d~~~~~~c-~p~~~~~v~~~L~~~g~~v~-~sel~~~P~ 205 (242)
.|.+.+.|.+.|+- -.... .|+...+| +.+....|++++++.|+++. ...+.|-|+
T Consensus 274 ld~l~~~a~~~g~~-akltGAG~Ggc~ial~~~~~~~~~i~~~~~~~Gi~~~y~~~~g~~~~ 334 (335)
T 3gon_A 274 LRQLKEASQDLQAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQERIGHDDK 334 (335)
T ss_dssp HHHHHHTTTTSSEE-EEECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCEEEEEEEC-----
T ss_pred HHHHHHHHHhCCcE-EEEccccchheEEEEECCHHHHHHHHHHHHHCCCcEEeehhhcCCCC
Confidence 57788888888872 33332 23666677 46778999999999999864 455666554
No 69
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=28.65 E-value=53 Score=25.48 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=36.5
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc---eeece------------------e-eeecCcceec--CHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK---AESSG------------------I-VMRPYTNIVF--KDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~---v~~se------------------l-~~~P~~~v~l--~~e~~~~~~~li~~ 224 (242)
.++.++.|..+..|+++|.+.|+. +.+.. . .++|+..+++ ++++.+.+.+.|..
T Consensus 15 ~I~AIIr~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~ 92 (135)
T 2o66_A 15 KVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIE 92 (135)
T ss_dssp EEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHH
Confidence 488999999999999999999764 31110 1 3467766664 66666654444433
No 70
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=28.11 E-value=62 Score=26.80 Aligned_cols=60 Identities=7% Similarity=0.061 Sum_probs=44.3
Q ss_pred eeeEEEECCCCChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeece
Q psy8853 137 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSG 199 (242)
Q Consensus 137 ~kG~i~v~~~~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~se 199 (242)
+.|++... ..++++.++.+-++|.+-||..-.... ..++.++..+++.|++.|+++....
T Consensus 12 ~lg~~t~~-~~~l~~~l~~~~~~G~~~vEl~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~ 71 (290)
T 3tva_A 12 PIGVFTSV-DAGLGVHLEVAQDLKVPTVQVHAPHPH--TRTREHAQAFRAKCDAAGIQVTVIF 71 (290)
T ss_dssp CEEEEEES-SSSSSBCHHHHHHTTCSEEEEECCCGG--GCSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEecC-CCCHHHHHHHHHHcCCCEEEecCCCCC--cCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 46777633 567888999999999999888422111 1356779999999999999876653
No 71
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=28.11 E-value=51 Score=29.29 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCccccee
Q psy8853 179 SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236 (242)
Q Consensus 179 ~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 236 (242)
..+....+.|++.||+|......+.-.. -++..+.++...|.+++.+ |+|..|+.
T Consensus 30 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~--~~ag~d~~Ra~dL~~a~~D-p~i~aI~~ 84 (331)
T 4e5s_A 30 ENRRLAVKRLTELGFHVTFSTHAEEIDR--FASSSISSRVQDLHEAFRD-PNVKAILT 84 (331)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCCT--TSSCCHHHHHHHHHHHHHC-TTEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEECCchhcccC--ccCCCHHHHHHHHHHHhhC-CCCCEEEE
Confidence 4566778889999999876554443322 3455556688888888865 78888875
No 72
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=27.86 E-value=44 Score=25.82 Aligned_cols=69 Identities=10% Similarity=-0.000 Sum_probs=45.1
Q ss_pred eEEEEeCccc--HHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHH-HHHhcCCCcccceecccc
Q psy8853 171 KITIITSPSK--FIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLL-NELKKLHDVKKVYTNALI 240 (242)
Q Consensus 171 ~~~~~c~p~~--~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li-~~Lee~dDV~~Vy~Ni~~ 240 (242)
.+.+.++|.. +..+.+.|.+. -+|.++-..-=+.+ .+.+-..+++.+..|+ +.|..++.|.++.+.+-+
T Consensus 73 ~v~v~~~~~~~~~~~~~~~l~~~-peV~~~~~vtG~~d~~~~v~~~d~~~l~~~l~~~l~~~~gV~~~~t~ivl 145 (162)
T 2p5v_A 73 FIRVSIRKAKDAREDFAASVRKW-PEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVL 145 (162)
T ss_dssp EEEEEECSSTTHHHHHHHHHTTC-TTEEEEEEESSSCSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEE
T ss_pred EEEEEEcCCchHHHHHHHHHhcC-hhhhEeeeecCCCCEEEEEEECCHHHHHHHHHHHhhcCCCeeEEEEEEEE
Confidence 3567778876 88888888653 23443332111222 3345556677889988 689999999998887643
No 73
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=27.59 E-value=72 Score=28.67 Aligned_cols=51 Identities=10% Similarity=0.225 Sum_probs=36.3
Q ss_pred EEEEeCcccH--HHHHHHHHHCCCceeeceeeeecCcceecCHHH-HHHHHHHHHHHhc
Q psy8853 172 ITIITSPSKF--IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKK 227 (242)
Q Consensus 172 ~~~~c~p~~~--~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~-~~~~~~li~~Lee 227 (242)
....|.|..+ ..+++.|++.|+++..-+..|-.. +.++ ..+++.|+|.|+.
T Consensus 321 ~~~~C~~~~~~~~~~~~~~~~~giP~l~ie~D~~~~-----~~~q~~TRieAF~Eml~~ 374 (385)
T 3o3m_B 321 MMKFCDPEEYDYPLVRKDIEDSGIPTLYVEIDQQTQ-----NNEQARTRIQTFAEMMSL 374 (385)
T ss_dssp EETTCHHHHHHHHHHHHHHHTTTCCEEEEEECTTCS-----CCHHHHHHHHHHHHHTC-
T ss_pred ccCCCCccHhhHHHHHHHHHHCCCCEEEEEecCCCC-----ChHHHHHHHHHHHHHHHH
Confidence 3456888755 568899988899988777555422 4444 5689999999953
No 74
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=27.11 E-value=1.4e+02 Score=24.92 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCcceEeecCceEEEEe--CcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcC
Q psy8853 151 TLLDLALEKGAEDFLIDKDNKITIIT--SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKL 228 (242)
Q Consensus 151 ~~~e~Aie~GaeDve~~ed~~~~~~c--~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~ 228 (242)
+++..+++.|+=|..+ +++.+ +...+..+.+...+.|..+.-|...|-.+.. .+.+..++++..+.
T Consensus 87 ~ll~~~~~~~~~d~iD-----vEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~-------~~el~~~~~~~~~~ 154 (238)
T 1sfl_A 87 NLISDLANINGIDMID-----IEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPP-------LDELQFIFFKMQKF 154 (238)
T ss_dssp HHHHHGGGCTTCCEEE-----EECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCEEE-----EEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcC-------HHHHHHHHHHHHHc
Confidence 4778888875444443 34444 5555666666666667777777766533221 23444555555555
Q ss_pred C-Ccccce
Q psy8853 229 H-DVKKVY 235 (242)
Q Consensus 229 d-DV~~Vy 235 (242)
. ||.+|-
T Consensus 155 gaDivKia 162 (238)
T 1sfl_A 155 NPEYVKLA 162 (238)
T ss_dssp CCSEEEEE
T ss_pred CCCEEEEE
Confidence 4 666654
No 75
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=27.10 E-value=1.1e+02 Score=26.53 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCC-
Q psy8853 151 TLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLH- 229 (242)
Q Consensus 151 ~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~d- 229 (242)
+++..|++.|.=|..+ +++..+.+.+..+.+...+.|..|.-|-..|-.+- + .+.+..++++.....
T Consensus 123 ~ll~~~l~~g~~dyID-----vEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP----~---~~el~~~~~~~~~~Ga 190 (276)
T 3o1n_A 123 DLNRAAVDSGLVDMID-----LELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTP----A---AEEIVQRLRKMQELGA 190 (276)
T ss_dssp HHHHHHHHHTCCSEEE-----EEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCC----C---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCEEE-----EECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCc----C---HHHHHHHHHHHHHcCC
Confidence 5888889988434433 33444555667777766777888777765543221 1 233444455555553
Q ss_pred Ccccce
Q psy8853 230 DVKKVY 235 (242)
Q Consensus 230 DV~~Vy 235 (242)
||.++-
T Consensus 191 DIvKia 196 (276)
T 3o1n_A 191 DIPKIA 196 (276)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 666653
No 76
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.01 E-value=45 Score=29.67 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=42.7
Q ss_pred eEEEEeCcc--------cHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCccccee
Q psy8853 171 KITIITSPS--------KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236 (242)
Q Consensus 171 ~~~~~c~p~--------~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 236 (242)
++-|+++.+ .+....+.|++.||+|......+.-.. -++..+.++...|.+++. +|+|..|+.
T Consensus 15 ~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~--~~ag~d~~Ra~dL~~a~~-Dp~i~aI~~ 85 (336)
T 3sr3_A 15 TIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDY--YRSGSIQERAKELNALIR-NPNVSCIMS 85 (336)
T ss_dssp EEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBT--TBSSCHHHHHHHHHHHHH-CTTEEEEEE
T ss_pred EEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEccccccccc--ccCCCHHHHHHHHHHHhh-CCCCCEEEE
Confidence 577776654 456667789999999876544333222 255556678888888886 478888875
No 77
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.70 E-value=1.2e+02 Score=21.75 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=11.0
Q ss_pred CcccHHHHHHHHHHCCC
Q psy8853 177 SPSKFIEIKNSLEMTGF 193 (242)
Q Consensus 177 ~p~~~~~v~~~L~~~g~ 193 (242)
+++.+..+-+.|+++||
T Consensus 41 ~~~Tvt~~l~rLe~kGl 57 (126)
T 1sd4_A 41 SDKTIRTLITRLYKKEI 57 (126)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHCCc
Confidence 45666666666666666
No 78
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
Probab=26.55 E-value=1.1e+02 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccce
Q psy8853 177 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235 (242)
Q Consensus 177 ~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy 235 (242)
.|+.+.++-+.+...|.+|.-+|+..... ++.+.+.+..++..+.+++.|..|.
T Consensus 213 ~~~~~~~~l~~~a~~g~pi~iTE~di~~~-----~~~qa~~~~~~~~~~~~~~~v~git 266 (302)
T 1nq6_A 213 VPSDFQANLQRFADLGVDVQITELDIEGS-----GSAQAANYTKVVNACLAVTRCTGIT 266 (302)
T ss_dssp CCTTHHHHHHHHHTTTCEEEEEEEEECCC-----HHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred CHHHHHHHHHHHHhcCCcEEEeeCCCCCc-----hHHHHHHHHHHHHHHHhCCCceEEE
Confidence 47888888888888899999999886531 2346678899999999999988764
No 79
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=25.72 E-value=54 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=21.3
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCc
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFK 194 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~ 194 (242)
.+++++.|..+..|.++|.+.|+.
T Consensus 27 ~I~aIIr~~k~e~V~~aL~~~Gi~ 50 (119)
T 2cz4_A 27 LVTIVAESLLEKRLVEEVKRLGAK 50 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred EEEEEECHHHHHHHHHHHHhCCCC
Confidence 488999999999999999999653
No 80
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=25.48 E-value=41 Score=28.32 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=37.7
Q ss_pred CChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeece
Q psy8853 147 TKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSG 199 (242)
Q Consensus 147 ~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~se 199 (242)
.+.++.++.|-++|.+-||..-.....+...+.+...+++.|++.|+++....
T Consensus 36 ~~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 88 (296)
T 2g0w_A 36 VSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVE 88 (296)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEeeh
Confidence 57899999999999988876321100011135678999999999999876643
No 81
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=25.46 E-value=90 Score=28.65 Aligned_cols=55 Identities=7% Similarity=-0.019 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEe--c-cCCeEEEEEEecCCcchhHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGY--S-VNGAAIIVDCITNNRMRTVS 112 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~--g-PgGv~iive~lTdN~nRt~~ 112 (242)
..+|+..|...++|.+.|.++|+...+- .+ - +|.. + .+|+.+|.| .-.|+.-..+
T Consensus 282 alaAia~a~~lgi~~~~i~~~L~~f~g~---~g-R-----~e~v~~~~~~g~~vi~D-~aHnp~~~~a 339 (469)
T 1j6u_A 282 ALAVIALFDSLGYDLAPVLEALEEFRGV---HR-R-----FSIAFHDPETNIYVIDD-YAHTPDEIRN 339 (469)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCCCC---TT-S-----SEEEEEETTTTEEEEEE-CCCSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-C-----cEEEcccccCCcEEEEe-CCCCHHHHHH
Confidence 4567778888999999999999998864 22 2 3333 3 368899999 5445443333
No 82
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.44 E-value=42 Score=28.45 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhc--C-CCCCCCHHHHHHHHHHHHcCCCHHHH
Q psy8853 27 RIMRELRVAINF--G-NNPDTNIKLRLAIEKALDANIPKNNI 65 (242)
Q Consensus 27 kl~reI~~Avk~--G-~dP~~N~~L~~ai~~Ak~~nmPk~~I 65 (242)
.++|.+.+.+-+ | +||..=..--++.+.+...|||-..|
T Consensus 70 ~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 70 FIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLF 111 (213)
T ss_dssp HHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 356666666666 8 89987777778889999999999887
No 83
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=25.27 E-value=1.4e+02 Score=25.34 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCC-
Q psy8853 151 TLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLH- 229 (242)
Q Consensus 151 ~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~d- 229 (242)
+++..|++.|.=|..+ +++.++. .+..+.+...+.|..+.-|...|-.+.. .+.+..++++..+..
T Consensus 104 ~ll~~~~~~g~~d~iD-----vEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~-------~~el~~~~~~~~~~ga 170 (257)
T 2yr1_A 104 RLIEAICRSGAIDLVD-----YELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPR-------KETLLADMRQAERYGA 170 (257)
T ss_dssp HHHHHHHHHTCCSEEE-----EEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCC-------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCEEE-----EECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcC-------HHHHHHHHHHHHhcCC
Confidence 5788899988434433 2333344 5556666555667777666665432221 223444444444444
Q ss_pred Ccccce
Q psy8853 230 DVKKVY 235 (242)
Q Consensus 230 DV~~Vy 235 (242)
||.+|-
T Consensus 171 DivKia 176 (257)
T 2yr1_A 171 DIAKVA 176 (257)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 655543
No 84
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=25.27 E-value=93 Score=25.66 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=47.7
Q ss_pred CChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCH----HHHHHHHHHH
Q psy8853 147 TKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD----GEAIKLQKLL 222 (242)
Q Consensus 147 ~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~----e~~~~~~~li 222 (242)
.+.+++++.+-++|.+-||... .+ | +...+++.|++.|+.+... +.|.. +++ +..+.+.+.+
T Consensus 31 ~~~~~~l~~~~~~G~~~vEl~~--~~-----~-~~~~~~~~l~~~gl~~~~~---~~~~~---~~~~~~~~~~~~~~~~i 96 (301)
T 3cny_A 31 NNLQQLLSDIVVAGFQGTEVGG--FF-----P-GPEKLNYELKLRNLEIAGQ---WFSSY---IIRDGIEKASEAFEKHC 96 (301)
T ss_dssp CCHHHHHHHHHHHTCCEECCCT--TC-----C-CHHHHHHHHHHTTCEECEE---EEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEecC--CC-----C-CHHHHHHHHHHCCCeEEEE---eccCC---CChhhHHHHHHHHHHHH
Confidence 5789999999999999998852 12 3 7899999999999987765 33321 122 2345566666
Q ss_pred HHHhcC
Q psy8853 223 NELKKL 228 (242)
Q Consensus 223 ~~Lee~ 228 (242)
+...++
T Consensus 97 ~~a~~l 102 (301)
T 3cny_A 97 QYLKAI 102 (301)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666655
No 85
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=25.04 E-value=1.4e+02 Score=26.95 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=42.7
Q ss_pred eEEEECCC-CChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceee-ceeeeecCc
Q psy8853 139 GQLLFLPN-TKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAES-SGIVMRPYT 206 (242)
Q Consensus 139 G~i~v~~~-~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~-sel~~~P~~ 206 (242)
-+|.+.++ ...+++++.....+. .+.+.|.|+|..|..-...|.+.||.+.. .-+.+.|+|
T Consensus 358 D~Vv~dPPr~g~~~~~~~l~~~~p-------~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t 420 (433)
T 1uwv_A 358 DKVLLDPARAGAAGVMQQIIKLEP-------IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT 420 (433)
T ss_dssp SEEEECCCTTCCHHHHHHHHHHCC-------SEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECCSTTS
T ss_pred CEEEECCCCccHHHHHHHHHhcCC-------CeEEEEECChHHHHhhHHHHHHCCcEEEEEEEeccCCCC
Confidence 35666554 334456665554332 34566789999999988999999999877 557788875
No 86
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.98 E-value=53 Score=24.12 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=28.0
Q ss_pred ceEEEEeCcccH-HHHHHHHHHC-CCceeeceeee
Q psy8853 170 NKITIITSPSKF-IEIKNSLEMT-GFKAESSGIVM 202 (242)
Q Consensus 170 ~~~~~~c~p~~~-~~v~~~L~~~-g~~v~~sel~~ 202 (242)
..+.|-|+|++. ..+++.++++ |+++..-.|.|
T Consensus 32 kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 32 KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 479999999887 8899999866 99888878877
No 87
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=24.94 E-value=2.4e+02 Score=25.64 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEeccCCeEEEEEEecCCcch---hHHHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMR---TVSNIRNI 117 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~gPgGv~iive~lTdN~nR---t~~~vr~~ 117 (242)
..+|+.-|...++|.+.|.++|+...+- .+ -+|.+..-..+.+|+.+|+| .-.|+.- ++..++..
T Consensus 296 alaAia~~~~lgi~~~~i~~~L~~f~~~---~g-R~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~ 363 (475)
T 1p3d_A 296 ATAALAVAKEEGIANEAILEALADFQGA---GR-RFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREG 363 (475)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTCCCB---TT-SSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-CCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhh
Confidence 3567788889999999999999988754 22 34433211111147889999 5555443 44444443
No 88
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=24.72 E-value=1.2e+02 Score=26.95 Aligned_cols=51 Identities=16% Similarity=-0.000 Sum_probs=39.0
Q ss_pred hhHHHHHHHhcCCcceEeecC---ceEEEEeCc-ccHHHHHHHHHHCCCceeecee
Q psy8853 149 KNTLLDLALEKGAEDFLIDKD---NKITIITSP-SKFIEIKNSLEMTGFKAESSGI 200 (242)
Q Consensus 149 ~d~~~e~Aie~GaeDve~~ed---~~~~~~c~p-~~~~~v~~~L~~~g~~v~~sel 200 (242)
.|.+.+.|.++||- .....- |++.++|+. ....++.++|++.|+.+....+
T Consensus 297 ld~l~~~a~~~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~g~~~~~~~~ 351 (365)
T 3k17_A 297 LKELADSAENMGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHT 351 (365)
T ss_dssp HHHHHHHHHHTTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHHTTCEECCCCB
T ss_pred HHHHHHHHHhcCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 58899999999997 666443 477778876 4589999999999987654443
No 89
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=24.68 E-value=78 Score=28.23 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHCCCceeeceeeeec---CcceecCHHHHHHHHHHHHHHhcCCCcccce
Q psy8853 179 SKFIEIKNSLEMTGFKAESSGIVMRP---YTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235 (242)
Q Consensus 179 ~~~~~v~~~L~~~g~~v~~sel~~~P---~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy 235 (242)
+++.+.-+.|.+.|++|.-+|+...- .++-+-.+.+.+.+..++..+.+++.|..|.
T Consensus 236 ~~~~~~l~~~a~lGl~v~iTElDv~~~~~~~~~~~~~~QA~~y~~~~~~~~~~~~v~git 295 (341)
T 3niy_A 236 DSFRRNLERFAKLGLQIYITEMDVRIPLSGSEDYYLKKQAEICAKIFDICLDNPAVKAIQ 295 (341)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCCCCChhHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 56777777777889999999987642 2111112356678999999999999887663
No 90
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=24.21 E-value=2.6e+02 Score=23.58 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=37.3
Q ss_pred ChhHHHHHHHhcCCcceEeec----Cce-EEE---EeCcccHHHHHHHHHHCCCceeece
Q psy8853 148 KKNTLLDLALEKGAEDFLIDK----DNK-ITI---ITSPSKFIEIKNSLEMTGFKAESSG 199 (242)
Q Consensus 148 ~~d~~~e~Aie~GaeDve~~e----d~~-~~~---~c~p~~~~~v~~~L~~~g~~v~~se 199 (242)
++++.++.|-++|.+-||... .+. +.+ ..+..+...+++.|++.|+.+.+..
T Consensus 37 ~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~ 96 (305)
T 3obe_A 37 DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISSSH 96 (305)
T ss_dssp THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEEEB
T ss_pred CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEEee
Confidence 788999999999999998842 111 111 1123388999999999999986654
No 91
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.09 E-value=69 Score=28.29 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=41.8
Q ss_pred eEEEEeCc-----ccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCccccee
Q psy8853 171 KITIITSP-----SKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYT 236 (242)
Q Consensus 171 ~~~~~c~p-----~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~ 236 (242)
++-|+++. ..+....+.|++.||+|......+.-.. -++..+.++...|.+++. +|+|..|+.
T Consensus 19 ~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~--~~agtd~~Ra~dL~~a~~-Dp~i~aI~~ 86 (311)
T 1zl0_A 19 RVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYR--YLAGTVEQRLEDLHNAFD-MPDITAVWC 86 (311)
T ss_dssp EEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBT--TBSSCHHHHHHHHHHHHH-STTEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECcccccccc--ccCCCHHHHHHHHHHHHh-CCCCCEEEE
Confidence 45565553 3467778889999999876654433222 255556668888888874 577877765
No 92
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.46 E-value=84 Score=20.29 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHh-cCCcceEee-cCceEEEEeCcccHHHHHHHHHHCCCcee
Q psy8853 153 LDLALE-KGAEDFLID-KDNKITIITSPSKFIEIKNSLEMTGFKAE 196 (242)
Q Consensus 153 ~e~Aie-~GaeDve~~-ed~~~~~~c~p~~~~~v~~~L~~~g~~v~ 196 (242)
.+.++. -|++++..+ ..+...|..+ +...+.+++++.||++.
T Consensus 23 ie~~l~~~gv~~~~v~~~~~~~~v~~~--~~~~i~~~i~~~Gy~~~ 66 (73)
T 3fry_A 23 VKKALEEAGAKVEKVDLNEAVVAGNKE--DVDKYIKAVEAAGYQAK 66 (73)
T ss_dssp HHHHHHHTTCEEEEECSSEEEEEEEGG--GHHHHHHHHHHTTCEEE
T ss_pred HHHHhccCCcEEEEEEccCCEEEEEEC--CHHHHHHHHHHcCCceE
Confidence 333443 566666553 2245666555 77888888888888754
No 93
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.20 E-value=39 Score=28.38 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhc--C-CCCCCCHHHHHHHHHHHHcCCCHHHH
Q psy8853 27 RIMRELRVAINF--G-NNPDTNIKLRLAIEKALDANIPKNNI 65 (242)
Q Consensus 27 kl~reI~~Avk~--G-~dP~~N~~L~~ai~~Ak~~nmPk~~I 65 (242)
.++|.+.+.+-+ | +||..=..--++.+.+...|||-..|
T Consensus 42 ~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 83 (201)
T 3bge_A 42 YVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGER 83 (201)
T ss_dssp HHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 356666666665 8 89987777778889999999999887
No 94
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=23.00 E-value=1.1e+02 Score=19.17 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHh--cCCcceEee-cCceEEEEeCcccHHHHHHHHHHCCCcee
Q psy8853 152 LLDLALE--KGAEDFLID-KDNKITIITSPSKFIEIKNSLEMTGFKAE 196 (242)
Q Consensus 152 ~~e~Aie--~GaeDve~~-ed~~~~~~c~p~~~~~v~~~L~~~g~~v~ 196 (242)
.++.++. -|+.++..+ ..+...+..++.....+.+.++..||.+.
T Consensus 20 ~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~ 67 (73)
T 1mwy_A 20 KVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLR 67 (73)
T ss_dssp HHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccc
Confidence 3445554 266666653 23456666666556778888888888653
No 95
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=22.92 E-value=1.1e+02 Score=18.82 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCcceEee-cCceEEEEeCcccHHHHHHHHHHCCCce
Q psy8853 160 GAEDFLID-KDNKITIITSPSKFIEIKNSLEMTGFKA 195 (242)
Q Consensus 160 GaeDve~~-ed~~~~~~c~p~~~~~v~~~L~~~g~~v 195 (242)
|+.++..+ ..+...+..++. ..+.++++..||.+
T Consensus 27 gv~~~~v~~~~~~~~v~~~~~--~~i~~~i~~~Gy~~ 61 (67)
T 2kyz_A 27 GVKNYEVSVEEKKVVVETENL--DSVLKKLEEIDYPV 61 (67)
T ss_dssp TCSEEEEETTTTEEEEECSCH--HHHHHHHHTTTCCC
T ss_pred CCeEEEEECCCCEEEEEECCH--HHHHHHHHHcCCce
Confidence 88777764 335667766665 88889999889875
No 96
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.60 E-value=70 Score=27.05 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=30.7
Q ss_pred HHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhh
Q psy8853 55 ALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120 (242)
Q Consensus 55 Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K 120 (242)
++..|+|.+.++.++..-... +. -+.+ +.++...+ +-.+...+..+.|...+..
T Consensus 24 ~~~~~l~~~~l~~~l~~l~~~----~~---~~~~---~~~~~~~~--~~~~~~~~~~~~l~~~L~~ 77 (258)
T 1lva_A 24 ATRASLSLEETRKLLQSMAAA----GQ---VTLL---RVENDLYA--ISTERYQAWWQAVTRALEE 77 (258)
T ss_dssp HHHHTCCHHHHHHHHHHHHHT----TS---EEEE---EETTEEEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhC----CC---EEEe---ccCCccEE--EcHHHHHHHHHHHHHHHHH
Confidence 556789999999888765532 11 1222 11111111 4456666777777777764
No 97
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=22.60 E-value=1.5e+02 Score=25.65 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=42.1
Q ss_pred CcccHHHHHHHHHHCCCceeeceeeee---cCcceecCHHHHHHHHHHHHHHhcCCCcccc
Q psy8853 177 SPSKFIEIKNSLEMTGFKAESSGIVMR---PYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234 (242)
Q Consensus 177 ~p~~~~~v~~~L~~~g~~v~~sel~~~---P~~~v~l~~e~~~~~~~li~~Lee~dDV~~V 234 (242)
.|+.+.+.-+.+...|.+|.-+|+... |.++.. .+.+.+.+..++..+.+++.|..|
T Consensus 211 ~~~~~~~~l~~~a~~g~pv~iTE~di~~~~~~~~~~-~~~qa~~~~~~~~~~~~~~~v~gi 270 (315)
T 3cui_A 211 VPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATK-LATQAADYKKVVQACMQVTRCQGV 270 (315)
T ss_dssp CCTTHHHHHHHHHTTTCEEEEEEEEEEEESSCCHHH-HHHHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHhcCCceEEEecccccCCCCChHH-HHHHHHHHHHHHHHHHhCCCceEE
Confidence 478888888888888999988888865 222111 134566788899999999988765
No 98
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=22.56 E-value=89 Score=28.78 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCcceeEEEEEEec-c---CC-eEEEEEEecCCcchhHHHHH
Q psy8853 48 LRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYS-V---NG-AAIIVDCITNNRMRTVSNIR 115 (242)
Q Consensus 48 L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~~~~~~~yEg~g-P---gG-v~iive~lTdN~nRt~~~vr 115 (242)
..+|+.-|...++|.+.|.++|+...+- .+ -++.+.....+ + +| +.+|+| .-.|+.-..+-++
T Consensus 297 alaAia~a~~lgi~~~~i~~~L~~f~~~---~g-R~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~ 364 (491)
T 2f00_A 297 AAAAVAVATEEGIDDEAILRALESFQGT---GR-RFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIK 364 (491)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHTCCCB---TT-SSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC---CC-CCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHH
Confidence 3467778888999999999999988754 22 34433211110 0 36 889999 5556544433333
No 99
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.31 E-value=66 Score=22.64 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHHHHHHhc-CC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q psy8853 29 MRELRVAINF-GN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSN 75 (242)
Q Consensus 29 ~reI~~Avk~-G~-dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~ 75 (242)
-++|..+.+. |+ ++- ++-+-|++.|||+.+|.++|.+-...
T Consensus 12 ~~~IL~~L~~~~pg~~~------t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 12 EQRILKFLEELGEGKAT------TAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHHCTTCCB------CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCc------CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456666777 62 332 35667888999999999999988743
No 100
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=22.23 E-value=1.3e+02 Score=24.65 Aligned_cols=78 Identities=13% Similarity=0.006 Sum_probs=47.8
Q ss_pred CChhHHHHHHHhcCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecC--cceecCHHH----HHHHHH
Q psy8853 147 TKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPY--TNIVFKDGE----AIKLQK 220 (242)
Q Consensus 147 ~~~d~~~e~Aie~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~--~~v~l~~e~----~~~~~~ 220 (242)
.+.++.++.+-++|.+-||..-..... ..+.++..+++.|++.|+.+... ...|. +....+++. .+.+.+
T Consensus 17 ~~~~~~l~~~~~~G~~~vEl~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~--~~~~~~~~l~~~d~~~r~~~~~~~~~ 92 (290)
T 2qul_A 17 VDFPATAKRIAGLGFDLMEISLGEFHN--LSDAKKRELKAVADDLGLTVMCC--IGLKSEYDFASPDKSVRDAGTEYVKR 92 (290)
T ss_dssp CCHHHHHHHHHHTTCSEEEEESTTGGG--SCHHHHHHHHHHHHHHTCEEEEE--EEECGGGCTTCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCEEEEecCCccc--cchhhHHHHHHHHHHcCCceEEe--cCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467899999999999988873221000 02367899999999999987663 22231 222223332 245666
Q ss_pred HHHHHhcC
Q psy8853 221 LLNELKKL 228 (242)
Q Consensus 221 li~~Lee~ 228 (242)
.++...++
T Consensus 93 ~i~~a~~l 100 (290)
T 2qul_A 93 LLDDCHLL 100 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66655554
No 101
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=22.04 E-value=1.4e+02 Score=24.18 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=39.2
Q ss_pred CChhHHHHHHHhcCCcceEeecCc--------eE-EEEeCcccHHHHHHHHHHCCCceeece
Q psy8853 147 TKKNTLLDLALEKGAEDFLIDKDN--------KI-TIITSPSKFIEIKNSLEMTGFKAESSG 199 (242)
Q Consensus 147 ~~~d~~~e~Aie~GaeDve~~ed~--------~~-~~~c~p~~~~~v~~~L~~~g~~v~~se 199 (242)
.+.+++++.+-++|.+-||..... .+ ....++.+...+++.|++.|+++....
T Consensus 22 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 83 (262)
T 3p6l_A 22 FPLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTG 83 (262)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 478999999999999999984321 11 111346678999999999999876554
No 102
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=21.95 E-value=29 Score=26.32 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=48.2
Q ss_pred EEEEeC--cccHHHHHHHHHHCCCceeeceeeeecCc-ceecCHHHHHHHHHHH-HHHhcCCCcccceecccc
Q psy8853 172 ITIITS--PSKFIEIKNSLEMTGFKAESSGIVMRPYT-NIVFKDGEAIKLQKLL-NELKKLHDVKKVYTNALI 240 (242)
Q Consensus 172 ~~~~c~--p~~~~~v~~~L~~~g~~v~~sel~~~P~~-~v~l~~e~~~~~~~li-~~Lee~dDV~~Vy~Ni~~ 240 (242)
+.+.|+ +..+..+.+.|.+. -+|.++...-=+.+ .+.+...+++.+..++ +.|..++.|.++.+.+-+
T Consensus 67 v~v~~~~~~~~~~~~~~~l~~~-p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~l~~~l~~~~gV~~~~t~ivl 138 (150)
T 2pn6_A 67 TSVKAKYGKNYHVELGNKLAQI-PGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVV 138 (150)
T ss_dssp EEEEECCCTTHHHHHHHHHHTS-TTEEEEEECSSSCSEEEEEEESSHHHHHHHTHHHHTTCTTEEEEEEEECS
T ss_pred EEEEecCChhHHHHHHHHHhcC-chhhhhhhhcCcCCEEEEEEECCHHHHHHHHHHHhccCCCeeEEEEEEEE
Confidence 556667 78899999999875 23433332211222 4456778899999999 899999999999887754
No 103
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=21.85 E-value=1.1e+02 Score=26.87 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccce
Q psy8853 178 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVY 235 (242)
Q Consensus 178 p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy 235 (242)
|+++.+.-+.|.+.|++|.-+|+... ..+.+.+..++..+.+++.|..|.
T Consensus 215 ~~~~~~~l~~~a~~G~pv~iTEldi~--------~~qa~~y~~~~~~~~~~~~v~git 264 (313)
T 1v0l_A 215 NSNFRTTLQNFAALGVDVAITELDIQ--------GAPASTYANVTNDCLAVSRCLGIT 264 (313)
T ss_dssp CTTHHHHHHHHHTTTCEEEEEEEEET--------TCCHHHHHHHHHHHHTCTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcc--------HHHHHHHHHHHHHHHhcCCceEEE
Confidence 67888888888888999988888765 345677888899988899887763
No 104
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.50 E-value=34 Score=28.84 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhc--C-CCCCCCHHHHHHHHHHHHcCCCHHHH
Q psy8853 27 RIMRELRVAINF--G-NNPDTNIKLRLAIEKALDANIPKNNI 65 (242)
Q Consensus 27 kl~reI~~Avk~--G-~dP~~N~~L~~ai~~Ak~~nmPk~~I 65 (242)
.++|.+.+.+-+ | +||..=..--++.+.+...|||-..|
T Consensus 48 ~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 89 (204)
T 2r9g_A 48 SICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARI 89 (204)
T ss_dssp HHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 466666666666 8 78876666668889999999999887
No 105
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=21.16 E-value=38 Score=24.99 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=30.2
Q ss_pred eceeeeecC---cceecC-HHHHHHHHHHHHHHhcCCCcccceeccccC
Q psy8853 197 SSGIVMRPY---TNIVFK-DGEAIKLQKLLNELKKLHDVKKVYTNALIF 241 (242)
Q Consensus 197 ~sel~~~P~---~~v~l~-~e~~~~~~~li~~Lee~dDV~~Vy~Ni~~~ 241 (242)
+++|.|..+ |.++=+ ++-++.+.++.+.+.+ ++.+|+.++.++
T Consensus 35 ~sGl~y~~~pm~T~IEGe~devm~vv~~~~e~~~~--g~~RV~~~iKid 81 (100)
T 2epi_A 35 KYDLKVETNAMGTVLEGDLDEILKAFKEAHSTVLN--DVDRVVSSLKID 81 (100)
T ss_dssp TSSCEEEEETTEEEEEEEHHHHHHHHHHHHHHHHT--TSSEEEEEEEEE
T ss_pred HcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHc--CCCEEEEEEEEE
Confidence 344455544 455533 4557888888888887 899999998874
No 106
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=20.97 E-value=3.4e+02 Score=22.10 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=36.0
Q ss_pred eEEEEeCcccHHHHHHHHHHCCCceeeceeeeecC--------cceecCHHHHHHHHHHHHH
Q psy8853 171 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPY--------TNIVFKDGEAIKLQKLLNE 224 (242)
Q Consensus 171 ~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~--------~~v~l~~e~~~~~~~li~~ 224 (242)
.|.+.-.|.++..+ -+.|+++.+-.+.-++. ..|.+++|+.+.+.+|.+.
T Consensus 100 v~il~k~p~d~~~l----ve~Gv~i~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~ 157 (187)
T 3lfj_A 100 VFLLFKNIDTCKRV----MDGGLPITTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTK 157 (187)
T ss_dssp EEEEESSHHHHHHH----HHTTCCCSEEEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHH----HHcCCCCCEEEECCCCCCCCCEEEeccEeeCHHHHHHHHHHHhc
Confidence 46666677766654 44688877766666553 4567899999999999886
No 107
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=20.87 E-value=49 Score=24.86 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCceeeceeeeecC---cceecC-HHHHHHHHHHHHHHhcCCCcccceeccccC
Q psy8853 182 IEIKNSLEMTGFKAESSGIVMRPY---TNIVFK-DGEAIKLQKLLNELKKLHDVKKVYTNALIF 241 (242)
Q Consensus 182 ~~v~~~L~~~g~~v~~sel~~~P~---~~v~l~-~e~~~~~~~li~~Lee~dDV~~Vy~Ni~~~ 241 (242)
..+.+.|++.|++ |..+ |.++=+ ++-++.+.++.+.+. .++.+|++++.++
T Consensus 36 a~~i~vi~~sGL~-------y~~~pmgT~IEGe~devm~vvk~~~e~~~--~g~~RV~t~iKId 90 (106)
T 1vk8_A 36 DRAIEKISSWGMK-------YEVGPSNTTVEGEFEEIMDRVKELARYLE--QFAKRFVLQLDID 90 (106)
T ss_dssp HHHHHHHHTTCSC-------EEECSSCEEEEECHHHHHHHHHHHHHHHT--TTCSEEEEEEEEE
T ss_pred HHHHHHHHHcCCC-------eEeCCCccEEEcCHHHHHHHHHHHHHHHH--cCCCEEEEEEEEE
Confidence 3445555555554 4443 555544 455778888888887 7999999998874
No 108
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=20.58 E-value=1e+02 Score=28.00 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=39.5
Q ss_pred ceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhc-CCCcccceecc
Q psy8853 170 NKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKK-LHDVKKVYTNA 238 (242)
Q Consensus 170 ~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee-~dDV~~Vy~Ni 238 (242)
+.|.| +..+...+.+.|++.|+++...- ..+.--.+.+++++ +++|.+ +|+|..|+-+.
T Consensus 45 ~~yiv--~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~-------~~~L~~~~p~V~~v~~~~ 104 (471)
T 3t41_A 45 LYYSV--EYKNTATFNKLVKKKSLNVVYNI-PELHVAQIKMTKMH-------ANALANYKNDIKYINATC 104 (471)
T ss_dssp EEEEE--EESCHHHHHHHHHHHTCEEEEEE-GGGTEEEEEECHHH-------HHHHHTCTTTEEEEEECC
T ss_pred eEEEE--EcCCHHHHHHHHHhCCCEEEEec-CCccEEEEEeCHHH-------HHHHHhcCCCCcEEEecc
Confidence 34555 45556699999999998874332 22333456677765 456778 89999888764
No 109
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=2.5e+02 Score=20.30 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=40.9
Q ss_pred eccCCeEEEEEEecC------CcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhc
Q psy8853 91 YSVNGAAIIVDCITN------NRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK 159 (242)
Q Consensus 91 ~gPgGv~iive~lTd------N~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~ 159 (242)
+||.+-.|+|-...+ ...-.+.+|...|..+| .. -++++ +..+|.|.+.. .+....||+.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~V---i~vr~-~~d~~fVtF~d----~~sAlaAi~m 68 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EV---ILIRF-VEDKMWVTFLE----GSSALNVLSL 68 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CE---EEEEE-CSSSEEEEESS----HHHHHHGGGG
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-Ce---EEEEE-ecCCEEEEECC----hHHHHHHHhc
Confidence 699888888888752 24447789999999987 22 24444 55558999972 3445566664
Done!