RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8853
         (242 letters)



>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
           [TaxId: 562]}
          Length = 244

 Score =  189 bits (482), Expect = 6e-61
 Identities = 94/241 (39%), Positives = 148/241 (61%), Gaps = 4/241 (1%)

Query: 3   GHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIP 61
           GHSKWAN + +K   DAKRGKI T+I+REL  A    G +PD N +LR A++KAL  N+ 
Sbjct: 1   GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMT 60

Query: 62  KNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKN 121
           ++ + RAI +      +++ N   + YEGY   G AI+++C+++NR RTV+ +R+ F+K 
Sbjct: 61  RDTLNRAIARGVGG--DDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC 118

Query: 122 GGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKF 181
           GGNL  +GSV ++F   G + F     ++T+++ ALE GAED +   D  I + T+  + 
Sbjct: 119 GGNLGTDGSVAYLFSKKGVISFEKGD-EDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEM 177

Query: 182 IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIF 241
            +++++LE  G KA+S+ + M P T        A KL +L++ L+   DV++VY N  I 
Sbjct: 178 GKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEIS 237

Query: 242 D 242
           D
Sbjct: 238 D 238


>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 243

 Score =  167 bits (423), Expect = 4e-52
 Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 4/240 (1%)

Query: 5   SKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKN 63
           S WA IK KK  VDA+RGK+ ++++RE+ VA    G NP+ N +LR AIE+A  AN+P  
Sbjct: 1   SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWE 60

Query: 64  NIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGG 123
           NI RAI       + E   + EV YEGY+  G A++V   T+NR RT S +R++F K+GG
Sbjct: 61  NIERAI--KKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGG 118

Query: 124 NLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIE 183
           NL   G V ++F+  G +           L     +   + +   +    I T P +  E
Sbjct: 119 NLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYE 178

Query: 184 IKNSLEMTGFKAESSGIVMRPYTNIVFKDGE-AIKLQKLLNELKKLHDVKKVYTNALIFD 242
           +K +LE  G   E + I  +P + +   D E A K+ KLLN L++L DV++V  N  I +
Sbjct: 179 VKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANFEIPE 238


>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
           pylori [TaxId: 210]}
          Length = 220

 Score =  124 bits (313), Expect = 7e-36
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 11/223 (4%)

Query: 23  KICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENI 81
           K+  ++ + + +A  + G+ PDTN KLR AI  A   N+PK+NI  AI++ +    ++  
Sbjct: 1   KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRAS----SKEG 56

Query: 82  NYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKN-GGNLSKEGSVLFMFKHCGQ 140
           N  E+ YEG +  G  II++C+T+N  RT++N+++ FNK  G ++   GS+ FMF     
Sbjct: 57  NLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSV 116

Query: 141 LLFLPNTKKNTLLDL-ALEKGAEDFLIDK----DNKITIITSPSKFIEIKNSLEMTGFKA 195
              L N  +N  L L  LE    D+ +++    ++KI I    + F  +    E      
Sbjct: 117 FECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPI 176

Query: 196 ESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA 238
             + +     T I   D +    +KLL+ ++   DV  +YTN 
Sbjct: 177 LKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNI 219


>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 253

 Score = 26.4 bits (58), Expect = 3.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 89  EGYSVNGAAIIVDCITNNRMRTVSNIRN 116
             YS   A +I D  T+     + N RN
Sbjct: 130 SMYSTAAAHLIRDLETDEGKIHIVNTRN 157


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 25.2 bits (55), Expect = 9.0
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 114 IRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKIT 173
           +  I +K G    +   ++    H G     PN  +   +D A+EK  E          +
Sbjct: 68  VFAIADKVGFARER---IILGGDHLG-----PNCWQQENVDAAMEKSVELVKAYVRAGFS 119

Query: 174 II 175
            I
Sbjct: 120 KI 121


>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
           polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 181

 Score = 24.6 bits (53), Expect = 9.7
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 199 GIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKV 234
            + +  + + +  D E   L     +L ++ DV  V
Sbjct: 144 AVPVASWFDNM-SDTELHDLLPFFEQLSRVDDVYSV 178


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 900,654
Number of extensions: 42994
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 21
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)