BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8855
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt)
Length = 128
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 1 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 60
M+YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACGDVMKLQIKVN G+I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKT 60
Query: 61 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
YGCGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 97
>pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex
Length = 129
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 88/96 (91%)
Query: 2 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTY 61
+YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACGDVMKLQIKVN G+I DA+FKTY
Sbjct: 3 AYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTY 62
Query: 62 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
GCGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 63 GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 98
>pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a)
Length = 128
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/97 (82%), Positives = 88/97 (90%)
Query: 1 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 60
M+YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACG VMKLQIKVN G+I DA+FKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGAVMKLQIKVNDEGIIEDARFKT 60
Query: 61 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
YGCGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 61 YGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 97
>pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae
Iron- Sulfur Cluster Assembly Protein U (Iscu) With
Zinc Bound At The Active Site. Northeast Structural
Genomics Consortium Target Ir24. This Protein Is Not
Apo, It Is A Model Without Zinc Binding Constraints.
pdb|1R9P|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae
Iron- Sulfur Cluster Assembly Protein U (Iscu) With
Zinc Bound At The Active Site. Northeast Structural
Genomics Consortium Target Ir24
Length = 134
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/97 (79%), Positives = 89/97 (91%)
Query: 1 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 60
M+YSEKV+DHYENPRNVG +K D+ VGTGMVGAPACGDVM+LQIKV+ NG+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60
Query: 61 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
YGCGSAIASSSL+TEWVKGK+L+EA +IKN+ IAEEL
Sbjct: 61 YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEEL 97
>pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U
(Iscu)
Length = 130
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 12 ENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSS 71
ENPRNVG +K VGTG+VGAPACGDVMKLQI+V++ G I DA+FKT+GCGSAIASSS
Sbjct: 8 ENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSS 67
Query: 72 LVTEWVKGKTLDEAMSIKNTDIAEEL 97
L TEWVKGKT++EA++IKNTDIA+EL
Sbjct: 68 LATEWVKGKTVEEALTIKNTDIAKEL 93
>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative)
pdb|1R94|B Chain B, Crystal Structure Of Isca (mercury Derivative)
pdb|1R95|A Chain A, Crystal Structure Of Isca (Native)
pdb|1R95|B Chain B, Crystal Structure Of Isca (Native)
Length = 118
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 76/103 (73%)
Query: 98 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 157
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 5 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 64
Query: 158 NEKDLLYFNGIELDFEFDGLNKGFKFKNPNIKNKCGCGKSFQI 200
+ K L + +G +LDF +GLN+GFKF NPN+K++CGCG+SF++
Sbjct: 65 DGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107
>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A
pdb|1S98|B Chain B, E.Coli Isca Crystal Structure To 2.3 A
Length = 107
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 75/103 (72%)
Query: 98 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 157
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 5 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 64
Query: 158 NEKDLLYFNGIELDFEFDGLNKGFKFKNPNIKNKCGCGKSFQI 200
+ K + + +G +LDF +GLN+GFKF NPN+K++CGCG+SF +
Sbjct: 65 DGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV 107
>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|B Chain B, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|C Chain C, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
Length = 157
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 3 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 61
Y+EKVLDH+ NPRNVGV E + G G G PACG M IKVN +N VI D +FKT+
Sbjct: 5 YNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTF 61
Query: 62 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
GCGSAIA SS++TE VKGK + A+++ DI EEL
Sbjct: 62 GCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL 97
>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|D Chain D, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
Length = 153
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 4/95 (4%)
Query: 3 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 62
YS+KV DH++NPRNVG E D G G VG P CGD+M + IKV K+ I D KF+T+G
Sbjct: 2 YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKV-KDNRIEDIKFQTFG 57
Query: 63 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
C +AIA+SS+ TE KGKT++EA+ I +AE L
Sbjct: 58 CAAAIATSSMATEMAKGKTIEEALKITRDAVAEAL 92
>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
Length = 145
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 68/103 (66%)
Query: 98 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 157
+T AA +I + + K+ +G+RLGV GC+G Y L+ V E K+D +F+ +G ++F+
Sbjct: 43 LTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFV 102
Query: 158 NEKDLLYFNGIELDFEFDGLNKGFKFKNPNIKNKCGCGKSFQI 200
+ + + +G E+DF +GLN+ FKF NP +N+CGCG+SF +
Sbjct: 103 PLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145
>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex
Aeolicus: Northeast Structural Genomics Consortium
Target Qr6
Length = 124
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 98 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 156
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 157 INEKDLLYFNGIELDFEFDGLNKGFKFKNPNIKNKCGCGKSF 198
I+ + Y NG ELD+ D + GF +NPN CGCG SF
Sbjct: 72 IDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSF 113
>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly
Protein Iscu From Bacillus Subtilis, With Zinc Bound At
The Active Site. Northeast Structural Genomics
Consortium Target Sr17
pdb|2AZH|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly
Protein Sufu From Bacillus Subtilis, With Zinc Bound At
The Active Site. Northeast Structural Genomics
Consortium Target Sr17
Length = 147
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 60/86 (69%), Gaps = 5/86 (5%)
Query: 3 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 62
Y + ++DHY+NPRN GV ND+ V + P CGD ++L +K++ + ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVL--NDSIVVD--MNNPTCGDRIRLTMKLDGD-IVEDAKFEGEG 65
Query: 63 CGSAIASSSLVTEWVKGKTLDEAMSI 88
C ++AS+S++T+ +KGK ++ A+S+
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSM 91
>pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|B Chain B, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|C Chain C, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|D Chain D, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|E Chain E, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|F Chain F, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|G Chain G, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|H Chain H, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|I Chain I, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|J Chain J, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
Length = 138
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 3 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 62
Y E +LDHY++PRN GV + G GM P+CGD +++ + + + I D +F+ G
Sbjct: 8 YREILLDHYQSPRNFGVLPQATKQAG-GM--NPSCGDQVEVMVLLEGD-TIADIRFQGQG 63
Query: 63 CGSAIASSSLVTEWVKGKTLDEAMSIKN 90
C + AS+SL+TE VKGK + EA+ +
Sbjct: 64 CAISTASASLMTEAVKGKKVAEALELSR 91
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 92 DIAEELV-TKKAAKYINKYI-QKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFK 149
D+A L T AA + I ++ + LR+ + GCSG Y + ++ D +
Sbjct: 4 DMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIE 63
Query: 150 LNGVQIFINEKDLLYFNGIELDFEFDGLNKG-FKFKNPNIKNKCGCGKSFQI 200
+GVQ+ I+ L Y G +D+ +GL F NPN + CGCG SF I
Sbjct: 64 KSGVQLVIDPMSLQYLIGGTVDYT-EGLEGSRFTVNNPNATSTCGCGSSFSI 114
>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|B Chain B, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|C Chain C, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|D Chain D, Crystal Structure Of Isca With The [2fe-2s] Cluster
Length = 112
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 112 KRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELD 171
+RG+ LR+ V C Y L V E + D + + G I I + G+ +D
Sbjct: 21 RRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD 80
Query: 172 FEFDGLNKGFKFKNPNIKNKCGCGKSFQI 200
+ D + F+F NPN CGCG +F++
Sbjct: 81 YIEDLMGGAFRFHNPNASQTCGCGMAFRV 109
>pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A
Resolution
Length = 159
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 3 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 62
Y V DH + P + G + V + P CGDV+ L +K +++ I D F G
Sbjct: 10 YMAVVADHSKRPHHHGQLDG----VEAVQLNNPTCGDVISLTVKFDEDK-IEDIAFAGNG 64
Query: 63 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 98
C + ASSS++T+ V GK+ +EA+++ DI E+V
Sbjct: 65 CTISTASSSMMTDAVIGKSKEEALAL--ADIFSEMV 98
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 79 GKTLDEAMSIKNTDIAEELVTKKAAKYINKYIQKRGKGIGLRLGVYN 125
G+T E ++ ++ EE+V +A + + RGK +GL + V+N
Sbjct: 418 GQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFN 464
>pdb|3VSK|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSK|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSL|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form.
pdb|3VSL|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form
Length = 646
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 31 MVGAPACGDVMKLQIK-VNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK 89
+V P GD++ L K +NK+G +TD T+ A+ SS VKG TL K
Sbjct: 308 VVQNPKNGDILALAGKQINKSGKMTDYDIGTFTSQFAVGSS------VKGGTLLAGYQNK 361
Query: 90 NTDIAEELV 98
+ E +V
Sbjct: 362 AIKVGETMV 370
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 72 LVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKYINKYIQKR 113
++ + + GK L A+ +T + EELVT+ +AKY N IQK+
Sbjct: 93 IIWDRITGKPLYNAIVWLDTRV-EELVTEFSAKYNNNDIQKK 133
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 72 LVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKYINKYIQKR 113
++ + + GK L A+ +T + EELVT+ +AKY N IQK+
Sbjct: 89 IIWDRITGKPLYNAIVWLDTRV-EELVTEFSAKYNNNDIQKK 129
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 104 KYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLL 163
+ + Y+ +G +G+ V N+ C+G Y D + Q F GV DLL
Sbjct: 87 RQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYD---IDAQTFADWGV-------DLL 136
Query: 164 YFNGIELDFEFDGLNKGFK 182
F+G D + L G+K
Sbjct: 137 KFDGCYCD-SLENLADGYK 154
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 104 KYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLL 163
+ + Y+ +G +G+ V N+ C+G Y D + Q F GV DLL
Sbjct: 87 RQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYD---IDAQTFADWGV-------DLL 136
Query: 164 YFNGIELDFEFDGLNKGFK 182
F+G D + L G+K
Sbjct: 137 KFDGCYCD-SLENLADGYK 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,309,985
Number of Sequences: 62578
Number of extensions: 270817
Number of successful extensions: 783
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 48
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)