Query psy8855
Match_columns 200
No_of_seqs 216 out of 2222
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:06:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r94_A Protein YFHF; tetrameri 100.0 5.4E-35 1.9E-39 216.2 11.2 104 97-200 3-107 (118)
2 2d2a_A SUFA protein; iron-sulf 100.0 2.5E-34 8.5E-39 219.3 10.8 104 97-200 41-145 (145)
3 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 4.8E-35 1.7E-39 214.7 5.0 104 97-200 2-109 (112)
4 1nwb_A Hypothetical protein AQ 100.0 1.9E-34 6.4E-39 215.1 6.4 105 96-200 9-115 (124)
5 2apn_A Protein HI1723; HI1723 100.0 6.5E-34 2.2E-38 209.3 6.0 104 97-200 9-114 (114)
6 3lvl_A NIFU-like protein; prot 100.0 4.9E-33 1.7E-37 208.5 9.8 102 2-103 3-104 (129)
7 4eb5_C NIFU protein (NIFU-1); 100.0 2.1E-32 7.2E-37 209.6 8.7 98 2-103 1-99 (153)
8 2z7e_A ISCU protein, NIFU-like 100.0 1E-31 3.4E-36 207.1 8.7 100 1-103 3-104 (157)
9 2qq4_A Iron-sulfur cluster bio 100.0 2.2E-30 7.5E-35 196.2 8.2 88 2-93 7-94 (138)
10 1su0_B NIFU like protein ISCU; 100.0 4E-29 1.4E-33 193.3 9.0 85 2-91 9-93 (159)
11 1xjs_A NIFU-like protein; SR17 100.0 2.1E-29 7.3E-34 192.6 7.0 85 2-91 10-94 (147)
12 2k4z_A DSRR; ISCA/SUFA/HESB li 99.9 9E-24 3.1E-28 157.3 9.7 95 96-193 22-121 (125)
13 2p2e_A Putative Fe-S biosynthe 99.8 4.2E-19 1.4E-23 132.5 6.8 93 97-190 5-116 (128)
14 2qgo_A Putative Fe-S biosynthe 99.7 1.2E-17 4.2E-22 126.3 4.5 86 97-187 6-103 (141)
15 3g0m_A Cysteine desulfuration 87.1 1.6 5.4E-05 32.2 6.2 61 35-98 52-113 (141)
16 3r07_C Putative lipoate-protei 84.3 1.6 5.5E-05 29.6 4.7 57 31-90 11-67 (91)
17 1ni7_A ER75, hypothetical prot 71.6 2.9 0.0001 31.3 3.1 61 35-98 59-120 (155)
18 2wpn_B Periplasmic [nifese] hy 64.4 19 0.00066 31.6 7.4 63 40-110 30-109 (495)
19 1wlo_A SUFE protein; structura 63.2 6.6 0.00023 28.6 3.5 61 35-98 45-106 (136)
20 1cc1_L Hydrogenase (large subu 60.8 25 0.00086 30.9 7.5 63 40-110 25-104 (498)
21 1wui_L Periplasmic [NIFE] hydr 55.5 33 0.0011 30.5 7.4 63 41-111 19-98 (534)
22 2k02_A Ferrous iron transport 53.9 14 0.00049 24.6 3.7 40 87-128 16-56 (87)
23 1yqw_Q Periplasmic [NIFE] hydr 53.2 38 0.0013 30.3 7.4 63 41-111 28-107 (549)
24 1yq9_H Periplasmic [NIFE] hydr 51.7 43 0.0015 29.8 7.5 63 41-111 21-100 (536)
25 1e3d_B [NIFE] hydrogenase larg 49.6 46 0.0016 29.7 7.3 63 41-111 27-106 (542)
26 1vqz_A Lipoate-protein ligase, 46.9 49 0.0017 27.5 6.7 43 38-83 268-310 (341)
27 1i4j_A 50S ribosomal protein L 43.1 14 0.00048 25.8 2.3 20 70-89 17-36 (110)
28 2ftc_M Mitochondrial ribosomal 43.0 18 0.00063 25.1 3.0 35 70-111 13-48 (110)
29 2zqe_A MUTS2 protein; alpha/be 42.9 51 0.0017 21.5 5.1 38 77-114 9-59 (83)
30 2e5a_A Lipoyltransferase 1; li 42.3 33 0.0011 28.6 5.0 43 40-83 269-311 (347)
31 3ayx_A Membrane-bound hydrogen 41.3 85 0.0029 28.4 7.8 65 40-111 30-111 (596)
32 3r8s_S 50S ribosomal protein L 40.7 17 0.00058 25.3 2.5 20 70-89 17-36 (110)
33 3myr_B Nickel-dependent hydrog 40.3 84 0.0029 28.2 7.5 63 41-111 17-96 (561)
34 3hug_A RNA polymerase sigma fa 38.6 35 0.0012 22.2 3.7 38 76-113 50-88 (92)
35 3a7r_A Lipoate-protein ligase 37.9 58 0.002 26.9 5.8 43 38-83 261-303 (337)
36 3uqy_L Hydrogenase-1 large cha 37.2 1.1E+02 0.0037 27.7 7.7 64 41-111 31-111 (582)
37 3o6u_A Uncharacterized protein 36.3 79 0.0027 22.4 5.6 24 37-61 17-40 (128)
38 3fp5_A Acyl-COA binding protei 35.9 40 0.0014 23.3 3.7 36 75-110 66-104 (106)
39 2zjr_P 50S ribosomal protein L 35.0 21 0.00072 25.9 2.3 23 68-90 36-58 (134)
40 1fs1_B SKP1, cyclin A/CDK2-ass 34.8 14 0.00049 26.6 1.3 21 69-89 113-133 (141)
41 2vv5_A MSCS, small-conductance 28.8 18 0.00061 29.3 1.1 97 37-137 132-239 (286)
42 1xn7_A Hypothetical protein YH 27.5 52 0.0018 21.2 3.0 40 87-128 16-56 (78)
43 3v7d_A Suppressor of kinetocho 27.5 22 0.00076 26.5 1.3 35 70-108 126-161 (169)
44 2elr_A Zinc finger protein 406 26.3 35 0.0012 16.9 1.7 11 189-199 9-20 (36)
45 2p1m_A SKP1-like protein 1A; F 26.3 24 0.00083 25.9 1.3 36 69-108 117-153 (160)
46 1zfd_A SWI5; DNA binding motif 25.8 26 0.00088 17.0 1.1 9 191-199 5-16 (32)
47 1sp2_A SP1F2; zinc finger, tra 25.4 25 0.00087 16.9 1.0 9 191-199 4-15 (31)
48 1dd4_C 50S ribosomal protein L 25.3 29 0.00098 19.7 1.2 25 73-98 6-30 (40)
49 2ast_A S-phase kinase-associat 24.7 24 0.00082 25.9 1.1 37 68-108 117-154 (159)
50 1va1_A Transcription factor SP 22.0 23 0.00077 18.2 0.3 10 190-199 9-21 (37)
51 3mzy_A RNA polymerase sigma-H 21.4 90 0.0031 21.6 3.7 40 75-114 120-160 (164)
52 1bhi_A CRE-BP1, ATF-2; CRE bin 20.6 25 0.00086 17.9 0.3 10 190-199 7-19 (38)
53 2l0z_A Glycoprotein G2; zinc-b 20.3 38 0.0013 19.3 1.1 10 187-196 19-28 (42)
No 1
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=5.4e-35 Score=216.24 Aligned_cols=104 Identities=50% Similarity=1.020 Sum_probs=89.1
Q ss_pred Hh-hhhhHHHHHHhhhhcCcceeEEEEEecCCCCCceEEEEEecccCCCcEEEEeCCEEEEEecccccccCCcEEEeEec
Q psy8855 97 LV-TKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELDFEFD 175 (200)
Q Consensus 97 l~-~~~a~~~i~~~l~~~~~~~~lRi~v~~~GC~G~~~~l~l~~~~~~~D~v~e~~gi~v~id~~~~~~l~g~~IDy~~~ 175 (200)
+. ||+|+++|++++++++++.+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+||+.+++||+|++|||+++
T Consensus 3 I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~~~ 82 (118)
T 1r94_A 3 ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKE 82 (118)
T ss_dssp CEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEEEE
T ss_pred eEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEEcC
Confidence 45 89999999999987755678999999999999999999988889999999999999999999999999999999999
Q ss_pred CCccceEEeCCCCCCCccCCCCCCC
Q psy8855 176 GLNKGFKFKNPNIKNKCGCGKSFQI 200 (200)
Q Consensus 176 ~~~~~F~i~nP~~~~~C~CG~sf~~ 200 (200)
..+++|+|+|||++++||||+||++
T Consensus 83 ~~g~gF~~~NPna~~~CgCG~SF~~ 107 (118)
T 1r94_A 83 GLNEGFKFTNPNVKDECGCGESFKL 107 (118)
T ss_dssp TTEEEEEEECTTCCC----------
T ss_pred CCcCceEEeCCCCCCCCCCCCCcCC
Confidence 9999999999999999999999985
No 2
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=100.00 E-value=2.5e-34 Score=219.27 Aligned_cols=104 Identities=40% Similarity=0.802 Sum_probs=98.8
Q ss_pred Hh-hhhhHHHHHHhhhhcCcceeEEEEEecCCCCCceEEEEEecccCCCcEEEEeCCEEEEEecccccccCCcEEEeEec
Q psy8855 97 LV-TKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELDFEFD 175 (200)
Q Consensus 97 l~-~~~a~~~i~~~l~~~~~~~~lRi~v~~~GC~G~~~~l~l~~~~~~~D~v~e~~gi~v~id~~~~~~l~g~~IDy~~~ 175 (200)
+. ||+|+++|++++++++++.+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+||+.+++||+|++|||+++
T Consensus 41 ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy~e~ 120 (145)
T 2d2a_A 41 LTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVRE 120 (145)
T ss_dssp CEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEEEE
T ss_pred EEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEEEcC
Confidence 56 99999999999988765678999999999999999999988888999999999999999999999999999999999
Q ss_pred CCccceEEeCCCCCCCccCCCCCCC
Q psy8855 176 GLNKGFKFKNPNIKNKCGCGKSFQI 200 (200)
Q Consensus 176 ~~~~~F~i~nP~~~~~C~CG~sf~~ 200 (200)
..+++|+|+|||++++||||+||++
T Consensus 121 l~g~gF~f~NPna~~~CGCG~SF~v 145 (145)
T 2d2a_A 121 GLNQIFKFHNPKAQNECGCGESFGV 145 (145)
T ss_dssp TTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred CCcceEEEeCCCCCcccCCCCCccC
Confidence 9999999999999999999999985
No 3
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=100.00 E-value=4.8e-35 Score=214.69 Aligned_cols=104 Identities=26% Similarity=0.494 Sum_probs=93.1
Q ss_pred Hh-hhhhHHHHHHhhhhc-Cc--ceeEEEEEecCCCCCceEEEEEecccCCCcEEEEeCCEEEEEecccccccCCcEEEe
Q psy8855 97 LV-TKKAAKYINKYIQKR-GK--GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELDF 172 (200)
Q Consensus 97 l~-~~~a~~~i~~~l~~~-~~--~~~lRi~v~~~GC~G~~~~l~l~~~~~~~D~v~e~~gi~v~id~~~~~~l~g~~IDy 172 (200)
+. ||+|+++|+++++++ +. +.+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+||+.+++||+|++|||
T Consensus 2 i~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~IDy 81 (112)
T 1x0g_A 2 VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVDY 81 (112)
T ss_dssp CEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEEE
T ss_pred eEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEEE
Confidence 45 899999999999876 43 568999999999999999999988778899999999999999999999999999999
Q ss_pred EecCCccceEEeCCCCCCCccCCCCCCC
Q psy8855 173 EFDGLNKGFKFKNPNIKNKCGCGKSFQI 200 (200)
Q Consensus 173 ~~~~~~~~F~i~nP~~~~~C~CG~sf~~ 200 (200)
+++..+++|+|+|||++++||||+||++
T Consensus 82 ~~~~~g~gF~~~nPna~~~CgCG~SF~~ 109 (112)
T 1x0g_A 82 IEDLMGGAFRFHNPNASQTCGCGMAFRV 109 (112)
T ss_dssp EEETTEEEEEEECTTCSEECSSSSEEEC
T ss_pred EecCCCCEEEEeCCCCCcCCCCCCcccc
Confidence 9999999999999999999999999975
No 4
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=100.00 E-value=1.9e-34 Score=215.09 Aligned_cols=105 Identities=37% Similarity=0.672 Sum_probs=85.4
Q ss_pred HHh-hhhhHHHHHHhhhhcCc-ceeEEEEEecCCCCCceEEEEEecccCCCcEEEEeCCEEEEEecccccccCCcEEEeE
Q psy8855 96 ELV-TKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELDFE 173 (200)
Q Consensus 96 ~l~-~~~a~~~i~~~l~~~~~-~~~lRi~v~~~GC~G~~~~l~l~~~~~~~D~v~e~~gi~v~id~~~~~~l~g~~IDy~ 173 (200)
++. ||+|+++|++++++++. +.+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+||+.+++||+|++|||+
T Consensus 9 ~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy~ 88 (124)
T 1nwb_A 9 IFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYV 88 (124)
T ss_dssp CCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEEEEE
T ss_pred eEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEEEEE
Confidence 366 99999999999988753 6789999999999999999999887788999999999999999999999999999999
Q ss_pred ecCCccceEEeCCCCCCCccCCCCCCC
Q psy8855 174 FDGLNKGFKFKNPNIKNKCGCGKSFQI 200 (200)
Q Consensus 174 ~~~~~~~F~i~nP~~~~~C~CG~sf~~ 200 (200)
++..+++|+|+|||++++||||+||++
T Consensus 89 ~~~~g~gF~~~NPna~~~CgCG~SF~~ 115 (124)
T 1nwb_A 89 VDFMGGGFTIRNPNATGSCGCGSSFSC 115 (124)
T ss_dssp EETTEEEEEEECC--------------
T ss_pred cCCCcceEEEeCCCCCcCCCCCCCcCC
Confidence 999999999999999999999999985
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=100.00 E-value=6.5e-34 Score=209.29 Aligned_cols=104 Identities=31% Similarity=0.575 Sum_probs=97.9
Q ss_pred Hh-hhhhHHHHHHhhhhcC-cceeEEEEEecCCCCCceEEEEEecccCCCcEEEEeCCEEEEEecccccccCCcEEEeEe
Q psy8855 97 LV-TKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELDFEF 174 (200)
Q Consensus 97 l~-~~~a~~~i~~~l~~~~-~~~~lRi~v~~~GC~G~~~~l~l~~~~~~~D~v~e~~gi~v~id~~~~~~l~g~~IDy~~ 174 (200)
+. ||+|+++|++++++++ ++.+|||+++++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|||++
T Consensus 9 i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~IDy~~ 88 (114)
T 2apn_A 9 LTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTE 88 (114)
T ss_dssp CEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEEEEEC
T ss_pred EEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEEEEEc
Confidence 56 9999999999998765 467899999999999999999998777789999999999999999999999999999999
Q ss_pred cCCccceEEeCCCCCCCccCCCCCCC
Q psy8855 175 DGLNKGFKFKNPNIKNKCGCGKSFQI 200 (200)
Q Consensus 175 ~~~~~~F~i~nP~~~~~C~CG~sf~~ 200 (200)
+..+++|+|+|||++++||||+||++
T Consensus 89 ~~~g~~F~~~nPna~~~CgCG~SF~~ 114 (114)
T 2apn_A 89 GLEGSRFTVNNPNATSTCGCGSSFSI 114 (114)
T ss_dssp SSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred CCCcceEEEeCCCCCcCCCCCCCccC
Confidence 99999999999999999999999986
No 6
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=100.00 E-value=4.9e-33 Score=208.47 Aligned_cols=102 Identities=78% Similarity=1.221 Sum_probs=94.6
Q ss_pred cchHHHHHHHcCCCCCCCCCCCCCceeeEEecCCCcccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCC
Q psy8855 2 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 81 (200)
Q Consensus 2 ~Y~~~il~~~~~p~~~g~l~~~~~~~~~~~~~~~~CGD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~ 81 (200)
+|+++|||||+||+|.|.|++|+..+++++.+||+|||+|+|+|+++++++|+|++|+++||++++||+|+|+++++|||
T Consensus 3 ~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt 82 (129)
T 3lvl_A 3 AYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKS 82 (129)
T ss_dssp CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCc
Confidence 79999999999999999999887555678889999999999999998447999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhHHHHhhhhhH
Q psy8855 82 LDEAMSIKNTDIAEELVTKKAA 103 (200)
Q Consensus 82 ~~ea~~l~~~~i~~~l~~~~a~ 103 (200)
++||..|..+++.+.|++|+++
T Consensus 83 ~~ea~~i~~~~i~~~L~l~p~r 104 (129)
T 3lvl_A 83 LDEAQAIKNTDIAEELELPPVK 104 (129)
T ss_dssp HHHHHTCCHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999976654
No 7
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=99.97 E-value=2.1e-32 Score=209.59 Aligned_cols=98 Identities=52% Similarity=0.883 Sum_probs=92.2
Q ss_pred cchHHHHHHHcCCCCCCCCCCCCCceeeEEecCCCcccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCC
Q psy8855 2 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 81 (200)
Q Consensus 2 ~Y~~~il~~~~~p~~~g~l~~~~~~~~~~~~~~~~CGD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~ 81 (200)
+|+++|++||+||+|.|.|++|+ ++++.+||+|||+|+|+|+|++ ++|+|++|+++||++++||||+|+++++|||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~nP~CGD~i~l~lkv~d-~~I~D~~F~g~GCais~ASaS~mtelv~GKt 76 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKD-NRIEDIKFQTFGCAAAIATSSMATEMAKGKT 76 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCS---EEEEEECTTTCCEEEEEEEESS-SBEEEEEEEEESCHHHHHHHHHHHHHHTTCB
T ss_pred CcHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEecC-CeEEEEEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999887 6889999999999999999985 8999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhHHHHh-hhhhH
Q psy8855 82 LDEAMSIKNTDIAEELV-TKKAA 103 (200)
Q Consensus 82 ~~ea~~l~~~~i~~~l~-~~~a~ 103 (200)
++||..|+.+++.++|+ +|+++
T Consensus 77 leEA~~i~~~~i~~~L~glpp~R 99 (153)
T 4eb5_C 77 IEEALKITRDAVAEALGGLPKQK 99 (153)
T ss_dssp HHHHTTCCHHHHHHHHTCCCTTS
T ss_pred HHHHHHhhHHHHHHHhcCCCcch
Confidence 99999999999999998 77653
No 8
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=99.97 E-value=1e-31 Score=207.06 Aligned_cols=100 Identities=55% Similarity=0.889 Sum_probs=93.2
Q ss_pred CcchHHHHHHHcCCCCCCCCCCCCCceeeEEecCCCcccEEEEEEEEc-cCCcEEEEEEEecCccceeechhhhhhhhcC
Q psy8855 1 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTYGCGSAIASSSLVTEWVKG 79 (200)
Q Consensus 1 ~~Y~~~il~~~~~p~~~g~l~~~~~~~~~~~~~~~~CGD~i~i~l~i~-~~~~I~~~~f~~~GC~~~~Asas~~~~~i~g 79 (200)
++|+++||+||+||+|.|.|++|+ ++++.+||+|||+|+|+|+|+ ++++|+|++|+++||++++||+|+|+++++|
T Consensus 3 ~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~G 79 (157)
T 2z7e_A 3 FEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKG 79 (157)
T ss_dssp THHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999887 788999999999999999994 3489999999999999999999999999999
Q ss_pred CChhHHhhhhhhhhHHHHh-hhhhH
Q psy8855 80 KTLDEAMSIKNTDIAEELV-TKKAA 103 (200)
Q Consensus 80 k~~~ea~~l~~~~i~~~l~-~~~a~ 103 (200)
||++||..|..+++.+.|+ +|+++
T Consensus 80 kt~~EA~~i~~~~i~e~Lg~l~p~R 104 (157)
T 2z7e_A 80 KPIQYALNLTYKDIFEELGGLPPQK 104 (157)
T ss_dssp SBHHHHHHCCHHHHHHHHTCCCCSS
T ss_pred CcHHHHHHHHhccHHHHhcccCcch
Confidence 9999999999999999998 77653
No 9
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=99.96 E-value=2.2e-30 Score=196.20 Aligned_cols=88 Identities=36% Similarity=0.614 Sum_probs=83.4
Q ss_pred cchHHHHHHHcCCCCCCCCCCCCCceeeEEecCCCcccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCC
Q psy8855 2 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 81 (200)
Q Consensus 2 ~Y~~~il~~~~~p~~~g~l~~~~~~~~~~~~~~~~CGD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~ 81 (200)
+|+++|++||+||+|+|.+++|+ ++++.+||+|||+|+|+|++++ ++|+|++|+++||++++||+|+|+++++|||
T Consensus 7 lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~~-~~I~d~~f~~~GCais~ASaS~~te~i~Gkt 82 (138)
T 2qq4_A 7 LYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLEG-DTIADIRFQGQGCAISTASASLMTEAVKGKK 82 (138)
T ss_dssp HHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEET-TEEEEEEEEEECCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEECC-CEEEEEEEEecCCHHHHHHHHHHHHHHcCCc
Confidence 79999999999999999999876 7889999999999999999975 8999999999999999999999999999999
Q ss_pred hhHHhhhhhhhh
Q psy8855 82 LDEAMSIKNTDI 93 (200)
Q Consensus 82 ~~ea~~l~~~~i 93 (200)
++||..+..+.+
T Consensus 83 ~~ea~~i~~~~~ 94 (138)
T 2qq4_A 83 VAEALELSRKFQ 94 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 10
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=99.96 E-value=4e-29 Score=193.26 Aligned_cols=85 Identities=33% Similarity=0.563 Sum_probs=80.8
Q ss_pred cchHHHHHHHcCCCCCCCCCCCCCceeeEEecCCCcccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCC
Q psy8855 2 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 81 (200)
Q Consensus 2 ~Y~~~il~~~~~p~~~g~l~~~~~~~~~~~~~~~~CGD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~ 81 (200)
+|+++|++||+||+|+|.+ +|+ ++++.+||+|||+|+|+|+|++ ++|+|++|+++||++++||+|+|+++++|||
T Consensus 9 lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~~-g~I~d~~F~~~GCais~ASaS~mte~v~Gkt 83 (159)
T 1su0_B 9 LYMAVVADHSKRPHHHGQL-DGV---EAVQLNNPTCGDVISLTVKFDE-DKIEDIAFAGNGCTISTASSSMMTDAVIGKS 83 (159)
T ss_dssp HHHHHHHHHHHSCSSBSCC-TTC---CCEEEECSSSCCEEEEEEEESS-SSEEEEEEEEECCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEECC-CEEEEEEEEecCCHHHHHHHHHHHHHHcCCc
Confidence 7999999999999999999 886 5788899999999999999985 8999999999999999999999999999999
Q ss_pred hhHHhhhhhh
Q psy8855 82 LDEAMSIKNT 91 (200)
Q Consensus 82 ~~ea~~l~~~ 91 (200)
++||..|...
T Consensus 84 ~~Ea~~i~~~ 93 (159)
T 1su0_B 84 KEEALALADI 93 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 11
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=99.96 E-value=2.1e-29 Score=192.60 Aligned_cols=85 Identities=36% Similarity=0.738 Sum_probs=81.2
Q ss_pred cchHHHHHHHcCCCCCCCCCCCCCceeeEEecCCCcccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCC
Q psy8855 2 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 81 (200)
Q Consensus 2 ~Y~~~il~~~~~p~~~g~l~~~~~~~~~~~~~~~~CGD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~ 81 (200)
+|+++|++||+||+|+|.+ +|+ ++++.+||+|||+|+|+|+|++ ++|+|++|+++||++++||+|+|+++++|||
T Consensus 10 lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~~-~~I~d~~f~~~GCais~ASaS~mte~v~Gkt 84 (147)
T 1xjs_A 10 LYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLDG-DIVEDAKFEGEGCSISMASASMMTQAIKGKD 84 (147)
T ss_dssp HHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECCS-SBCCEEEEEEESSHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEECC-CeEEEEEEEecCCHHHHHHHHHHHHHHcCCc
Confidence 7999999999999999999 886 6889999999999999999985 8999999999999999999999999999999
Q ss_pred hhHHhhhhhh
Q psy8855 82 LDEAMSIKNT 91 (200)
Q Consensus 82 ~~ea~~l~~~ 91 (200)
++||..|..+
T Consensus 85 ~~Ea~~i~~~ 94 (147)
T 1xjs_A 85 IETALSMSKI 94 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 12
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.90 E-value=9e-24 Score=157.29 Aligned_cols=95 Identities=24% Similarity=0.324 Sum_probs=87.6
Q ss_pred HHh-hhhhHHHHHHhhhhcCc-ceeEEEEEe--cCCCCCceEEEEEecccCCCcEEEEeCCEEEEEecccccccCCcEEE
Q psy8855 96 ELV-TKKAAKYINKYIQKRGK-GIGLRLGVY--NRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNGIELD 171 (200)
Q Consensus 96 ~l~-~~~a~~~i~~~l~~~~~-~~~lRi~v~--~~GC~G~~~~l~l~~~~~~~D~v~e~~gi~v~id~~~~~~l~g~~ID 171 (200)
++. ||+|+++|++++++++. +.+|||+|+ ++| |++|.|.|+++ .++|.+++.+|++|+||+.+++||+|++||
T Consensus 22 ~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G~~ID 98 (125)
T 2k4z_A 22 MFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQTTLD 98 (125)
T ss_dssp CEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTTEEEE
T ss_pred EEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCCCEEE
Confidence 356 99999999999988753 578999999 888 99999999876 889999999999999999999999999999
Q ss_pred eEe-cCCccceEEeCCCCCCCcc
Q psy8855 172 FEF-DGLNKGFKFKNPNIKNKCG 193 (200)
Q Consensus 172 y~~-~~~~~~F~i~nP~~~~~C~ 193 (200)
|++ +..+++|+|+|||+++.|.
T Consensus 99 y~~~~l~g~gF~~~NPna~~~~p 121 (125)
T 2k4z_A 99 YVELEPGQFHFIFLNPRDPTYRP 121 (125)
T ss_dssp EEEEETTEEEEEEECSSSCSSCC
T ss_pred EEeCCCCcCeEEECCCCCCccCC
Confidence 999 9999999999999998885
No 13
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.77 E-value=4.2e-19 Score=132.49 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=83.8
Q ss_pred Hh-hhhhHHHHHHhhhhcCcceeEEEEEecC-------CCCC-ceEEEEEecccCC----CcEEEEeCCEEEEEeccccc
Q psy8855 97 LV-TKKAAKYINKYIQKRGKGIGLRLGVYNR-------GCSG-LSYKLEYVDEKRK----EDQVFKLNGVQIFINEKDLL 163 (200)
Q Consensus 97 l~-~~~a~~~i~~~l~~~~~~~~lRi~v~~~-------GC~G-~~~~l~l~~~~~~----~D~v~e~~gi~v~id~~~~~ 163 (200)
+. ||+|+++|++++++++....||+. +++ ||+| +.|.|.|++++.+ .|.+++.+|++|+||+.++.
T Consensus 5 ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~s~~ 83 (128)
T 2p2e_A 5 ITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYSKM 83 (128)
T ss_dssp EEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGGGG
T ss_pred EEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcchHH
Confidence 45 899999999999887555789999 666 8999 6999999988877 89999999999999999999
Q ss_pred ccCC-cEEEeEecC----Cccc-eEEeCCCCCC
Q psy8855 164 YFNG-IELDFEFDG----LNKG-FKFKNPNIKN 190 (200)
Q Consensus 164 ~l~g-~~IDy~~~~----~~~~-F~i~nP~~~~ 190 (200)
||+| ++|||+++. ++++ |.|.|||++.
T Consensus 84 ~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~~ 116 (128)
T 2p2e_A 84 YMDDNMKISLNTNNSLLRLTGDNSGELMPALSI 116 (128)
T ss_dssp GSCSEEEEEECSSSSCEEEEETTTEEEEEEECE
T ss_pred hhCCCeEEEEeCCCceEEecCCccEEECCCCee
Confidence 9996 999999998 8999 9999999863
No 14
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.69 E-value=1.2e-17 Score=126.31 Aligned_cols=86 Identities=14% Similarity=0.309 Sum_probs=70.8
Q ss_pred Hh-hhhhHHHHHHhhhhcCcceeE-------EEEEecCCCC-CceEEEEEecccCCC-cEEEEeC-CEEEEEeccccccc
Q psy8855 97 LV-TKKAAKYINKYIQKRGKGIGL-------RLGVYNRGCS-GLSYKLEYVDEKRKE-DQVFKLN-GVQIFINEKDLLYF 165 (200)
Q Consensus 97 l~-~~~a~~~i~~~l~~~~~~~~l-------Ri~v~~~GC~-G~~~~l~l~~~~~~~-D~v~e~~-gi~v~id~~~~~~l 165 (200)
+. ||+|+++|+++++.++ ...| |+.+.++||+ |++|.|.|++++.++ |.+++.+ |++|+||+.+++||
T Consensus 6 ItlTd~Aa~~ik~~l~~~~-~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl~yL 84 (141)
T 2qgo_A 6 IKFTDNAVDYLKRREILDK-ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDKTML 84 (141)
T ss_dssp EEECHHHHHHHHHTTCTTS-EEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHHTTS
T ss_pred EEECHHHHHHHHHHHhhcc-ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHHHHh
Confidence 45 8999999999998874 6789 9999999999 999999999888888 9999999 59999999999999
Q ss_pred C-CcEEEeEecCCccceEEeCCC
Q psy8855 166 N-GIELDFEFDGLNKGFKFKNPN 187 (200)
Q Consensus 166 ~-g~~IDy~~~~~~~~F~i~nP~ 187 (200)
+ |++|||++ ..|.+++|.
T Consensus 85 d~G~~IDy~~----~~l~Lks~s 103 (141)
T 2qgo_A 85 GPNMVMDYNA----GSLSLSSDE 103 (141)
T ss_dssp CSSEEEEEET----TEEEEEETT
T ss_pred cCCCEEeEEC----CEEEEcCCC
Confidence 9 99999995 489998875
No 15
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=87.07 E-value=1.6 Score=32.20 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=50.0
Q ss_pred CCcccEEEEEEEEccCCcEEEEEEEec-CccceeechhhhhhhhcCCChhHHhhhhhhhhHHHHh
Q psy8855 35 PACGDVMKLQIKVNKNGVITDAKFKTY-GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 98 (200)
Q Consensus 35 ~~CGD~i~i~l~i~~~~~I~~~~f~~~-GC~~~~Asas~~~~~i~gk~~~ea~~l~~~~i~~~l~ 98 (200)
+.|-..|=+...++++|+ +.|.+. ==.|...-++++...+.|+|.+|+..+......+.||
T Consensus 52 ~GCqS~VWl~~~~~~~g~---l~f~adSDA~IvkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lG 113 (141)
T 3g0m_A 52 HGCQSQVWIVMRRNANGI---IELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMA 113 (141)
T ss_dssp CSSSSCEEEEEEECTTSB---EEEEEEESSHHHHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHT
T ss_pred CCCccCeeEEEEEcCCCE---EEEEecCccHHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcC
Confidence 679999988888854565 778876 3567788889999999999999999999866667776
No 16
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=84.31 E-value=1.6 Score=29.61 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=38.8
Q ss_pred EecCCCcccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhhh
Q psy8855 31 MVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIKN 90 (200)
Q Consensus 31 ~~~~~~CGD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~~ 90 (200)
+.+-| .| .|++++.+++ |+|+++++.|+==....-...-+.+.++|.+.+++.....
T Consensus 11 ~~kf~-~G-~v~v~l~v~~-G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~~l~ 67 (91)
T 3r07_C 11 NWKAK-KG-LIRVTLDLDG-NRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKINDIIR 67 (91)
T ss_dssp EEECS-SC-EEEEEEEEET-TEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHHHHH
T ss_pred EEEcC-Cc-EEEEEEEEcC-CEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHHHHH
Confidence 33334 46 8999999985 8999999999732111123466778888988885544433
No 17
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=71.59 E-value=2.9 Score=31.29 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCcccEEEEEEEEccCCcEEEEEEEecC-ccceeechhhhhhhhcCCChhHHhhhhhhhhHHHHh
Q psy8855 35 PACGDVMKLQIKVNKNGVITDAKFKTYG-CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 98 (200)
Q Consensus 35 ~~CGD~i~i~l~i~~~~~I~~~~f~~~G-C~~~~Asas~~~~~i~gk~~~ea~~l~~~~i~~~l~ 98 (200)
+.|-..|=|+..++++| .+.|.+.. -.|...-++++...+.|+|.+|+..+...+..+.||
T Consensus 59 ~GCqS~VWl~~~~~~dg---~l~F~adSDA~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lG 120 (155)
T 1ni7_A 59 AGCENRVWLGYTVAENG---KMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELG 120 (155)
T ss_dssp CSSSSCEEEECCCCSSS---CCCCEEEESSHHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHT
T ss_pred CCCccCeeEEEEEcCCC---EEEEeeCCccHHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcC
Confidence 56999987776653445 36777763 567788899999999999999999999876667776
No 18
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=64.45 E-value=19 Score=31.58 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=43.6
Q ss_pred EEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhh
Q psy8855 40 VMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKA 102 (200)
Q Consensus 40 ~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a 102 (200)
.++|.|.+++ ++|+++.+.+.== ==+-.+++|++..|+..++ ..+++.++| .|+.
T Consensus 30 ~lri~l~vd~-~~V~~a~~~g~~~-------RG~Ekil~gr~~~~a~~i~~RIcGiC~~aH~~A~~~AvE~a~gi~vP~~ 101 (495)
T 2wpn_B 30 HLKAEVVVEN-GKVVDARLSGGMY-------RGFETILRGRDPRDASQIVQRICGVCPTAHSTASVLALDEAFGAKVPNN 101 (495)
T ss_dssp CEEEEEEEET-TEEEEEEEEECBC-------CCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred cEEEEEEEeC-CEEEEEEEecccc-------chHHHHHCCCCHHHHHHHhhhhheeCHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3788888885 8999998744210 1144677899999998885 446777888 5665
Q ss_pred HHHHHHhh
Q psy8855 103 AKYINKYI 110 (200)
Q Consensus 103 ~~~i~~~l 110 (200)
++.|+.++
T Consensus 102 a~~iR~l~ 109 (495)
T 2wpn_B 102 GRITRNLI 109 (495)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66565555
No 19
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=63.24 E-value=6.6 Score=28.60 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=48.3
Q ss_pred CCcccEEEEEEEEccCCcEEEEEEEecC-ccceeechhhhhhhhcCCChhHHhhhhhhhhHHHHh
Q psy8855 35 PACGDVMKLQIKVNKNGVITDAKFKTYG-CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 98 (200)
Q Consensus 35 ~~CGD~i~i~l~i~~~~~I~~~~f~~~G-C~~~~Asas~~~~~i~gk~~~ea~~l~~~~i~~~l~ 98 (200)
+.|-..|=+...++++| ..+.|.++- =.|...-++++...+.|+|.+|+..+..+ ..+.||
T Consensus 45 ~GCqS~VWl~~~~~~~g--~~l~f~~dSDA~IvkGl~alL~~~~~G~tp~eIl~~d~~-~~~~lG 106 (136)
T 1wlo_A 45 HECQTPFFVHADVEGGK--VRLYFHVPDEAPTVKAFAGLLREGLEGESPEAVLEVPPG-FYRGYG 106 (136)
T ss_dssp TTSSSCCEEEEEEETTE--EEEEEECSSCCHHHHHHHHHHHHTTTTCCTTTTTSSCTT-TTTTTT
T ss_pred CCCccCeEEEEEEeCCc--eEEEEecCCccHHHHHHHHHHHHHHcCCCHHHHHhCCHH-HHHHcC
Confidence 57999998887766533 258898874 56778889999999999999999999884 555555
No 20
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=60.80 E-value=25 Score=30.87 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=42.7
Q ss_pred EEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhh
Q psy8855 40 VMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKA 102 (200)
Q Consensus 40 ~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a 102 (200)
.++|.|.+++ ++|+++.+.+.== ==+-.+++|++..|+..++ ..+++.++| .|+.
T Consensus 25 ~lri~l~vdg-~~V~~a~~~g~~~-------RG~Ekil~gr~~~~a~~i~~RIcGiC~~aH~~A~~~AvE~a~gi~vP~~ 96 (498)
T 1cc1_L 25 HLKIEVEVKD-GKVVDAKCSGGMF-------RGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAFGVKVTTN 96 (498)
T ss_dssp CEEEEEEEET-TEEEEEEEEECBC-------CCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred cEEEEEEEeC-CEEEEEEEecCcC-------ccHHHHhCCCCHHHHHHHhhHHHhcCHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3788888885 8999998744210 1134577899999998885 446777788 5665
Q ss_pred HHHHHHhh
Q psy8855 103 AKYINKYI 110 (200)
Q Consensus 103 ~~~i~~~l 110 (200)
++.|+.++
T Consensus 97 a~~iR~l~ 104 (498)
T 1cc1_L 97 GRITRNLI 104 (498)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 21
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=55.55 E-value=33 Score=30.50 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=44.0
Q ss_pred EEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhhH
Q psy8855 41 MKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKAA 103 (200)
Q Consensus 41 i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a~ 103 (200)
++|.+.+++ ++|+++...+.= . ==+-.+++|++..++..++ ..+++.++| .|+.+
T Consensus 19 lri~l~vd~-~~V~~a~~~g~~--~-----RG~Ekil~gR~~~da~~it~RICGiC~~~H~~A~~~AvE~a~gi~vP~~A 90 (534)
T 1wui_L 19 LRIEVEVEN-GKVKNAYSSSTL--F-----RGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDNAVGVHIPKNA 90 (534)
T ss_dssp EEEEEEEET-TEEEEEEEEECB--C-----CCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHH
T ss_pred eEEEEEEcC-CEEEEEEEcccc--c-----hHHHHHHcCCCHHHHHhHhcccccccHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 678888885 899999874421 1 1133577899999998885 456777888 56666
Q ss_pred HHHHHhhh
Q psy8855 104 KYINKYIQ 111 (200)
Q Consensus 104 ~~i~~~l~ 111 (200)
+.|+.++.
T Consensus 91 ~~iR~L~~ 98 (534)
T 1wui_L 91 TYIRNLVL 98 (534)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 22
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=53.89 E-value=14 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=27.3
Q ss_pred hhhhhhhHHHHh-hhhhHHHHHHhhhhcCcceeEEEEEecCCC
Q psy8855 87 SIKNTDIAEELV-TKKAAKYINKYIQKRGKGIGLRLGVYNRGC 128 (200)
Q Consensus 87 ~l~~~~i~~~l~-~~~a~~~i~~~l~~~~~~~~lRi~v~~~GC 128 (200)
.++.++|++.|+ ++......-+.|++. +...|+.....||
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~Le~~--G~l~R~~~~~~~C 56 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERMEAM--GKVVRISETSEGC 56 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHTT--CCSEEEEEECCSS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCCC
Confidence 345678899999 777777666666665 4567775445555
No 23
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=53.23 E-value=38 Score=30.26 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=43.9
Q ss_pred EEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhhH
Q psy8855 41 MKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKAA 103 (200)
Q Consensus 41 i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a~ 103 (200)
++|.+.+++ ++|+++...+.= . ==+-.+++|++..++..++ ..+++.++| .|+.+
T Consensus 28 lri~v~vd~-~~V~~a~~~g~~--~-----RG~Ekil~gR~~~da~~it~RICGiC~~~H~~A~~~AvE~a~gi~vP~~A 99 (549)
T 1yqw_Q 28 LRIMVEVEN-GKVKDAWSSSQL--F-----RGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANA 99 (549)
T ss_dssp EEEEEEEET-TEEEEEEEEECB--C-----CCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTCCCCHHH
T ss_pred eEEEEEEcC-CEEEEEEEcccc--c-----hHHHHHHcCCCHHHHHHHhcccccccHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 788888885 899999864421 1 1133567899999998885 456778888 56666
Q ss_pred HHHHHhhh
Q psy8855 104 KYINKYIQ 111 (200)
Q Consensus 104 ~~i~~~l~ 111 (200)
+.|+.++.
T Consensus 100 ~~iR~L~~ 107 (549)
T 1yqw_Q 100 RMMRNLVM 107 (549)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 24
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=51.68 E-value=43 Score=29.79 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=43.7
Q ss_pred EEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhhH
Q psy8855 41 MKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKAA 103 (200)
Q Consensus 41 i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a~ 103 (200)
++|.+.+++ ++|+++...+. .. ==+-.+++|++..++..++ ..+++.++| .|+.+
T Consensus 21 lri~~~vd~-~~V~~a~~~g~--~~-----RG~E~il~gr~~~da~~~~~RICGiC~~~H~~a~~~AvE~a~gi~vP~~a 92 (536)
T 1yq9_H 21 LRIEVEVEG-GKIKNAWSMST--LF-----RGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVGVKIPENA 92 (536)
T ss_dssp EEEEEEEET-TEEEEEEEEEC--BC-----CCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHH
T ss_pred eEEEEEEeC-CEEEEEEEccc--ch-----HHHHHHHcCCCHHHHHHHhcccccccHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 788888885 89998886332 10 1134577899999998885 456777888 56666
Q ss_pred HHHHHhhh
Q psy8855 104 KYINKYIQ 111 (200)
Q Consensus 104 ~~i~~~l~ 111 (200)
+.|+.++.
T Consensus 93 ~~iR~l~~ 100 (536)
T 1yq9_H 93 TLMRNLTM 100 (536)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666664
No 25
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=49.58 E-value=46 Score=29.67 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=43.7
Q ss_pred EEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhhH
Q psy8855 41 MKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKAA 103 (200)
Q Consensus 41 i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a~ 103 (200)
++|.+.+++ ++|+++...+. .. ==+-.+++|++..++..++ ..+++.++| .|..+
T Consensus 27 lri~~~vd~-~~V~~a~~~g~--~~-----RG~Ekil~gr~~~da~~~t~RICGiC~~~H~~a~~~AvE~a~gi~vP~~A 98 (542)
T 1e3d_B 27 LRIEVEVEG-GVIKEARSCAT--LF-----RGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLEDAINKPIPANA 98 (542)
T ss_dssp EEEEEEEET-TEEEEEEEEEC--BC-----CCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHCCCCCHHH
T ss_pred eEEEEEEcC-CEEEEEEEccc--cc-----cHHHHHHcCCCHHHHHHHhcccccccHhHHHHHHHHHHHHHhCCCCCHHH
Confidence 788888885 89999986432 11 1133567899999998885 456777788 56666
Q ss_pred HHHHHhhh
Q psy8855 104 KYINKYIQ 111 (200)
Q Consensus 104 ~~i~~~l~ 111 (200)
+.|+.++.
T Consensus 99 ~~iR~l~~ 106 (542)
T 1e3d_B 99 TYIRNLVL 106 (542)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 26
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=46.93 E-value=49 Score=27.54 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=31.6
Q ss_pred ccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChh
Q psy8855 38 GDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLD 83 (200)
Q Consensus 38 GD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ 83 (200)
+-.|++.+.|++ |+|+++++.++- +......-+.+.++|.+.+
T Consensus 268 ~G~v~~~~~v~~-g~I~~~~i~gDf--~~~~~~~~l~~~L~G~~~~ 310 (341)
T 1vqz_A 268 SGKVEVFANVTE-SKIQDIKIYGDF--FGIEDVAAVEDVLRGVKYE 310 (341)
T ss_dssp TEEEEEEEEEET-TEEEEEEEEESC--CCSSCTHHHHHHHTTCBSS
T ss_pred CCcEEEEEEEeC-CEEEEEEEECCc--CCcchHHHHHHHhCCCCCC
Confidence 457999999985 999999999873 2223334577888888765
No 27
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=43.06 E-value=14 Score=25.79 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=17.1
Q ss_pred hhhhhhhhcCCChhHHhhhh
Q psy8855 70 SSLVTEWVKGKTLDEAMSIK 89 (200)
Q Consensus 70 as~~~~~i~gk~~~ea~~l~ 89 (200)
+-.++.+|.|++++||..+.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L 36 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNIL 36 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 45688999999999998875
No 28
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=43.01 E-value=18 Score=25.15 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=23.6
Q ss_pred hhhhhhhhcCCChhHHhhhhhhhhHHHHhhh-hhHHHHHHhhh
Q psy8855 70 SSLVTEWVKGKTLDEAMSIKNTDIAEELVTK-KAAKYINKYIQ 111 (200)
Q Consensus 70 as~~~~~i~gk~~~ea~~l~~~~i~~~l~~~-~a~~~i~~~l~ 111 (200)
+-.++.+|.|++++||..+..- +| +|+..+.++|.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~f-------~pkkaa~~v~klL~ 48 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLEF-------NDKKGAKIIKEVLL 48 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHHH-------CCHHHHHHHHHHHH
Confidence 3467899999999999886532 23 44455555554
No 29
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=42.94 E-value=51 Score=21.45 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred hcCCChhHHhhhhhhhhHHHH-------------hhhhhHHHHHHhhhhcC
Q psy8855 77 VKGKTLDEAMSIKNTDIAEEL-------------VTKKAAKYINKYIQKRG 114 (200)
Q Consensus 77 i~gk~~~ea~~l~~~~i~~~l-------------~~~~a~~~i~~~l~~~~ 114 (200)
+.|++.+||.....+.|.+.. |+..=++.+.++|.+.+
T Consensus 9 LhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~GvLr~~V~~~L~~~~ 59 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDK 59 (83)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhcCC
Confidence 579999999988888887764 24344678888887764
No 30
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=42.28 E-value=33 Score=28.58 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=34.3
Q ss_pred EEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChh
Q psy8855 40 VMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLD 83 (200)
Q Consensus 40 ~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ 83 (200)
.+++.+.+++ |+|+++++.+.|=........-+.+.++|.+.+
T Consensus 269 ~v~~~~~v~~-g~I~~~~i~~~~d~~~~~~~~~l~~~L~G~~~~ 311 (347)
T 2e5a_A 269 EIKVFIDVKN-GRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFS 311 (347)
T ss_dssp EEEEEEEEET-TEEEEEEEECCTTTSCHHHHHHHHHHHTTSBSC
T ss_pred EEEEEEEEcC-CEEEEEEEEecCCcCChhHHHHHHHHhCCCCCC
Confidence 6788888875 899999999777666666666778889999775
No 31
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=41.30 E-value=85 Score=28.35 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=43.1
Q ss_pred EEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhh
Q psy8855 40 VMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKA 102 (200)
Q Consensus 40 ~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a 102 (200)
.++|.|.++++++|.++...+.- . --+-.+++|++..++..+. ..+++.++| .|..
T Consensus 30 ~lr~~l~~d~ge~V~~a~~~g~~--h-----RG~Ek~legr~~~~a~~~~~Ricgic~~~h~~a~~~AvE~a~gi~vP~~ 102 (596)
T 3ayx_A 30 HMRCEVNVDENNVIQNAVSTGTM--W-----RGLEVILRGRDPRDAWAFVERICGVCTGCHALASVRAVEDALDIKIPHN 102 (596)
T ss_dssp CEEEEEEECTTSBEEEEEEEECB--C-----CCHHHHTTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHH
T ss_pred cEEEEEEEeCCCeEEEEEECCcc--h-----hHHHHHHcCCCHHHHHHHhhhhhhccHHHHHHHHHHHHHHHhCCCCCHH
Confidence 37888889833799988753321 1 1234577899999988775 456667787 5666
Q ss_pred HHHHHHhhh
Q psy8855 103 AKYINKYIQ 111 (200)
Q Consensus 103 ~~~i~~~l~ 111 (200)
++.|+.++.
T Consensus 103 a~~iR~l~~ 111 (596)
T 3ayx_A 103 ATLIREIMA 111 (596)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 32
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=40.69 E-value=17 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=16.9
Q ss_pred hhhhhhhhcCCChhHHhhhh
Q psy8855 70 SSLVTEWVKGKTLDEAMSIK 89 (200)
Q Consensus 70 as~~~~~i~gk~~~ea~~l~ 89 (200)
+-.++.+|.|++++||..+.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L 36 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDIL 36 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 34688999999999998765
No 33
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.18.1.0
Probab=40.34 E-value=84 Score=28.20 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=41.9
Q ss_pred EEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhhH
Q psy8855 41 MKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKAA 103 (200)
Q Consensus 41 i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a~ 103 (200)
++|.+.+++ ++|.++...+. .. -=+-.+++|++..++..+. ..+++.++| .|+.+
T Consensus 17 lri~l~ldg-e~V~~a~~~g~--~h-----RG~Ekilegr~~~~a~~l~~RIcGiC~~ah~~A~~~AvE~a~GievP~rA 88 (561)
T 3myr_B 17 LRIEAQMDG-ATIAQAYSSGT--MV-----RGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNA 88 (561)
T ss_dssp EEEEEEEET-TEEEEEEEEEC--BC-----CCHHHHTTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTCCCCHHH
T ss_pred EEEEEEEeC-CEEEEEEEecC--cc-----hHHHHHHcCCCHHHHHHHhcccccccHhHHHHHHHHHHHHHhCCCCCHHH
Confidence 788888886 79998863221 11 1245778899999988775 345667777 56666
Q ss_pred HHHHHhhh
Q psy8855 104 KYINKYIQ 111 (200)
Q Consensus 104 ~~i~~~l~ 111 (200)
+.|+.++.
T Consensus 89 ~~iR~l~~ 96 (561)
T 3myr_B 89 QLIRNLMI 96 (561)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 34
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.63 E-value=35 Score=22.16 Aligned_cols=38 Identities=8% Similarity=0.007 Sum_probs=24.4
Q ss_pred hhcCCChhHHhhhhhhhhHHHHh-hhhhHHHHHHhhhhc
Q psy8855 76 WVKGKTLDEAMSIKNTDIAEELV-TKKAAKYINKYIQKR 113 (200)
Q Consensus 76 ~i~gk~~~ea~~l~~~~i~~~l~-~~~a~~~i~~~l~~~ 113 (200)
.+.|++..|+.....-.....-. .-.|.++|++.+...
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777665544333334 566778888888654
No 35
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=37.93 E-value=58 Score=26.94 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=31.8
Q ss_pred ccEEEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChh
Q psy8855 38 GDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLD 83 (200)
Q Consensus 38 GD~i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ 83 (200)
+-.|++.+.+++ |+|+++++.++- +......-+.+.++|...+
T Consensus 261 ~g~v~~~~~v~~-g~I~~~~i~gD~--~~~~~~~~l~~~L~G~~~~ 303 (337)
T 3a7r_A 261 WGGVELHFDVEK-GHITRAQVFTDS--LNPAPLEALAGRLQGCLYR 303 (337)
T ss_dssp TEEEEEEEEEET-TEEEEEEEEECC--SCCHHHHHHHHHTTTCBSS
T ss_pred CCcEEEEEEEcC-CEEEEEEEECCC--CCchHHHHHHHHhCCCCCC
Confidence 347999999985 899999999862 1223345577888898775
No 36
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_L* 3use_L*
Probab=37.18 E-value=1.1e+02 Score=27.66 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=42.1
Q ss_pred EEEEEEEccCCcEEEEEEEecCccceeechhhhhhhhcCCChhHHhhhh---------------hhhhHHHHh--hhhhH
Q psy8855 41 MKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK---------------NTDIAEELV--TKKAA 103 (200)
Q Consensus 41 i~i~l~i~~~~~I~~~~f~~~GC~~~~Asas~~~~~i~gk~~~ea~~l~---------------~~~i~~~l~--~~~a~ 103 (200)
++|.+.++++++|.++...+.-= -=+-.+++|++..++..+. ..+++.++| .|+-+
T Consensus 31 lrl~l~ldgE~vV~~a~~~G~~h-------RG~Ekilegr~~~da~~~t~RIcGic~~ah~~A~~~AvE~a~GievP~rA 103 (582)
T 3uqy_L 31 MRCEVNINDQNVITNAVSCGTMF-------RGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNA 103 (582)
T ss_dssp EEEEEEECTTSBEEEEEEEECBC-------CCHHHHTTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHH
T ss_pred EEEEEEEcCCcEEEEEEcCCccc-------hHHHHHHcCCCHHHHHHHhchhhhccHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 78888888656887775544310 1145677889988888765 445667777 56666
Q ss_pred HHHHHhhh
Q psy8855 104 KYINKYIQ 111 (200)
Q Consensus 104 ~~i~~~l~ 111 (200)
+.|+.++.
T Consensus 104 ~~iR~l~~ 111 (582)
T 3uqy_L 104 NIIRNIML 111 (582)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 37
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR biology; 2.50A {Clostridium perfringens}
Probab=36.32 E-value=79 Score=22.37 Aligned_cols=24 Identities=46% Similarity=0.696 Sum_probs=20.0
Q ss_pred cccEEEEEEEEccCCcEEEEEEEec
Q psy8855 37 CGDVMKLQIKVNKNGVITDAKFKTY 61 (200)
Q Consensus 37 CGD~i~i~l~i~~~~~I~~~~f~~~ 61 (200)
-|..+.+.|.|++ |+|+++.+...
T Consensus 17 ~g~~v~V~VTVkd-gkIt~i~~~~~ 40 (128)
T 3o6u_A 17 HGYKAKLSIKVSD-GKITEAKYNEF 40 (128)
T ss_dssp TSEEEEEEEEESS-SSEEEEEEEEE
T ss_pred cCCeEEEEEEEEC-CEEEEEEEecc
Confidence 5667999999986 89999999753
No 38
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=35.91 E-value=40 Score=23.34 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=27.9
Q ss_pred hhhcCCChhHHhhhhhhhhHHHHh---hhhhHHHHHHhh
Q psy8855 75 EWVKGKTLDEAMSIKNTDIAEELV---TKKAAKYINKYI 110 (200)
Q Consensus 75 ~~i~gk~~~ea~~l~~~~i~~~l~---~~~a~~~i~~~l 110 (200)
..+.|.|.+||+..--+.+.+.+. ++.|++.|.++-
T Consensus 66 ~~l~gmS~eeA~~~YI~~v~~l~~~~~~~~~~~~~~~le 104 (106)
T 3fp5_A 66 KSVEGTSKEVAYQKYVEKLLEILKKADTEESKKYIAEIE 104 (106)
T ss_dssp HTTTTCCHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 456899999999887666666665 888888887763
No 39
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=35.01 E-value=21 Score=25.85 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=18.6
Q ss_pred echhhhhhhhcCCChhHHhhhhh
Q psy8855 68 ASSSLVTEWVKGKTLDEAMSIKN 90 (200)
Q Consensus 68 Asas~~~~~i~gk~~~ea~~l~~ 90 (200)
==+-.++.+|.|+++++|..+..
T Consensus 36 kK~r~Va~~IRG~~v~eAl~~L~ 58 (134)
T 2zjr_P 36 RKVRLVVDVIRGKSVQDAEDLLR 58 (134)
T ss_dssp HHHHHHHHHSTTSBHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 33567899999999999987653
No 40
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=34.83 E-value=14 Score=26.64 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=15.8
Q ss_pred chhhhhhhhcCCChhHHhhhh
Q psy8855 69 SSSLVTEWVKGKTLDEAMSIK 89 (200)
Q Consensus 69 sas~~~~~i~gk~~~ea~~l~ 89 (200)
++..++.+++|||++|..++-
T Consensus 113 ~c~~vA~~ikgkt~eeiR~~f 133 (141)
T 1fs1_B 113 TCKTVANMIKGKTPEEIRKTF 133 (141)
T ss_dssp HHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHc
Confidence 345678889999998877653
No 41
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=28.81 E-value=18 Score=29.32 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=56.9
Q ss_pred cccEEEEEEEEccCCcEEEEEEEe------cCccceeechhhhhhhhcCCChhHHhhhhhhhhHHHHh--hhhhHHHHHH
Q psy8855 37 CGDVMKLQIKVNKNGVITDAKFKT------YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV--TKKAAKYINK 108 (200)
Q Consensus 37 CGD~i~i~l~i~~~~~I~~~~f~~------~GC~~~~Asas~~~~~i~gk~~~ea~~l~~~~i~~~l~--~~~a~~~i~~ 108 (200)
-||.|++. .. .|+|+++++.. +|-.+.+-=+.++...+.+.|......+.- .+.=..+ .+++++.+++
T Consensus 132 vGD~I~i~-g~--~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~-~v~v~y~~d~~~v~~~l~~ 207 (286)
T 2vv5_A 132 AGEYVDLG-GV--AGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEF-IIGVAYDSDIDQVKQILTN 207 (286)
T ss_dssp TTCEEESS-SC--EEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEE-EEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEC-CE--EEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCCcEEEEE-EEEEcCCCCHHHHHHHHHH
Confidence 35655543 11 24555555443 577787888788878888887764333211 0100112 4566777777
Q ss_pred hhhhcC---cceeEEEEEecCCCCCceEEEEE
Q psy8855 109 YIQKRG---KGIGLRLGVYNRGCSGLSYKLEY 137 (200)
Q Consensus 109 ~l~~~~---~~~~lRi~v~~~GC~G~~~~l~l 137 (200)
.+++++ .+...++.+...|-++..|.+.+
T Consensus 208 ~~~~~~~vl~~p~p~v~v~~~~~~~i~~~v~~ 239 (286)
T 2vv5_A 208 IIQSEDRILKDREMTVRLNELGASSINFVVRV 239 (286)
T ss_dssp HHHHCTTBCTTSCEEEEEEEECSSSEEEEEEE
T ss_pred HHHhCcccccCCCCEEEEEEecCCeEEEEEEE
Confidence 776654 22346777777777888877766
No 42
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.54 E-value=52 Score=21.21 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=26.1
Q ss_pred hhhhhhhHHHHh-hhhhHHHHHHhhhhcCcceeEEEEEecCCC
Q psy8855 87 SIKNTDIAEELV-TKKAAKYINKYIQKRGKGIGLRLGVYNRGC 128 (200)
Q Consensus 87 ~l~~~~i~~~l~-~~~a~~~i~~~l~~~~~~~~lRi~v~~~GC 128 (200)
.++.++|++.|+ ++......-+.|++.+ ...|+...+++|
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~Le~~G--~l~R~~~~GgaC 56 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQLESMG--KAVRIQEEPDGC 56 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHHT--SEEEECCCCCCC
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEEecCcCCCC
Confidence 345678889999 7777766666666653 456763334555
No 43
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=27.49 E-value=22 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=22.0
Q ss_pred hhhhhhhhcCCChhHHhhhhhhhhHHHHh-hhhhHHHHHH
Q psy8855 70 SSLVTEWVKGKTLDEAMSIKNTDIAEELV-TKKAAKYINK 108 (200)
Q Consensus 70 as~~~~~i~gk~~~ea~~l~~~~i~~~l~-~~~a~~~i~~ 108 (200)
+-.++.+++|||++|+.++-.- .. . ||+..+++++
T Consensus 126 c~~vA~~ikgktpeeiR~~f~I--~n--d~t~eEe~~ir~ 161 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFNI--VN--DFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTC--CC--CCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHcCC--CC--CCCHHHHHHHHH
Confidence 4567889999999987765320 00 1 6666665544
No 44
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.27 E-value=35 Score=16.89 Aligned_cols=11 Identities=45% Similarity=1.232 Sum_probs=8.1
Q ss_pred CCCcc-CCCCCC
Q psy8855 189 KNKCG-CGKSFQ 199 (200)
Q Consensus 189 ~~~C~-CG~sf~ 199 (200)
.-.|. ||++|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elr_A 9 THLCDMCGKKFK 20 (36)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeecCcCCCCcC
Confidence 34674 999995
No 45
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=26.26 E-value=24 Score=25.95 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=23.1
Q ss_pred chhhhhhhhcCCChhHHhhhhhhhhHHHHh-hhhhHHHHHH
Q psy8855 69 SSSLVTEWVKGKTLDEAMSIKNTDIAEELV-TKKAAKYINK 108 (200)
Q Consensus 69 sas~~~~~i~gk~~~ea~~l~~~~i~~~l~-~~~a~~~i~~ 108 (200)
++-.++.+++|||++|..++-. |.. . ||...+++++
T Consensus 117 ~c~~vA~~ikgkt~eeir~~f~--I~n--d~t~eEe~~ir~ 153 (160)
T 2p1m_A 117 TCQTVADMIKGKTPEEIRTTFN--IKN--DFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHHTTTTCCHHHHHHHTT--CCC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHcC--CCC--CCCHHHHHHHHH
Confidence 3456789999999999877633 110 2 6665555544
No 46
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.83 E-value=26 Score=16.95 Aligned_cols=9 Identities=44% Similarity=1.224 Sum_probs=7.4
Q ss_pred Ccc---CCCCCC
Q psy8855 191 KCG---CGKSFQ 199 (200)
Q Consensus 191 ~C~---CG~sf~ 199 (200)
.|. ||++|.
T Consensus 5 ~C~~~~C~k~f~ 16 (32)
T 1zfd_A 5 SCDHPGCDKAFV 16 (32)
T ss_dssp CCCCTTCCCCBS
T ss_pred cCcCCCCCCccC
Confidence 585 999996
No 47
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=25.35 E-value=25 Score=16.87 Aligned_cols=9 Identities=56% Similarity=1.265 Sum_probs=7.4
Q ss_pred Cc---cCCCCCC
Q psy8855 191 KC---GCGKSFQ 199 (200)
Q Consensus 191 ~C---~CG~sf~ 199 (200)
.| .||++|.
T Consensus 4 ~C~~~~C~k~f~ 15 (31)
T 1sp2_A 4 MCTWSYCGKRFT 15 (31)
T ss_dssp BCCSTTCCCBCS
T ss_pred CCcCCCCCcccC
Confidence 58 5999996
No 48
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=25.32 E-value=29 Score=19.69 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.9
Q ss_pred hhhhhcCCChhHHhhhhhhhhHHHHh
Q psy8855 73 VTEWVKGKTLDEAMSIKNTDIAEELV 98 (200)
Q Consensus 73 ~~~~i~gk~~~ea~~l~~~~i~~~l~ 98 (200)
+.+.+.+.|+-|+.+|.. .+.+.+|
T Consensus 6 iie~i~~lTvlE~~eLvk-~leekfG 30 (40)
T 1dd4_C 6 IIEAIEKLTVSELAELVK-KLEDKFG 30 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHhCcHHHHHHHHH-HHHHHHC
Confidence 567889999999999866 6888888
No 49
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=24.74 E-value=24 Score=25.86 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred echhhhhhhhcCCChhHHhhhhhhhhHHHHh-hhhhHHHHHH
Q psy8855 68 ASSSLVTEWVKGKTLDEAMSIKNTDIAEELV-TKKAAKYINK 108 (200)
Q Consensus 68 Asas~~~~~i~gk~~~ea~~l~~~~i~~~l~-~~~a~~~i~~ 108 (200)
+++..++.+++|||++|..++-. |.. . ||+..+++++
T Consensus 117 ~~c~~va~~i~gkt~eeir~~f~--I~~--d~t~eEe~~ir~ 154 (159)
T 2ast_A 117 VTCKTVANMIKGKTPEEIRKTFN--IKN--DFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHTT--CCC--CSCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHcC--CCC--CCCHHHHHHHHH
Confidence 34556889999999999776633 100 1 5655555544
No 50
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=21.97 E-value=23 Score=18.18 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=8.0
Q ss_pred CCcc---CCCCCC
Q psy8855 190 NKCG---CGKSFQ 199 (200)
Q Consensus 190 ~~C~---CG~sf~ 199 (200)
-.|. ||++|.
T Consensus 9 ~~C~~~~C~k~f~ 21 (37)
T 1va1_A 9 HICHIQGCGKVYG 21 (37)
T ss_dssp EECCSTTCCCEES
T ss_pred CCCCCCCCCCccC
Confidence 4696 999995
No 51
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.39 E-value=90 Score=21.56 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=22.7
Q ss_pred hhhcCCChhHHhhhhhhhhHHHHh-hhhhHHHHHHhhhhcC
Q psy8855 75 EWVKGKTLDEAMSIKNTDIAEELV-TKKAAKYINKYIQKRG 114 (200)
Q Consensus 75 ~~i~gk~~~ea~~l~~~~i~~~l~-~~~a~~~i~~~l~~~~ 114 (200)
..+.|+|..|+.....-.....-. .-.|.++|++.+.+.+
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566666655554433333333 4567788888887653
No 52
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.61 E-value=25 Score=17.91 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=8.1
Q ss_pred CCcc---CCCCCC
Q psy8855 190 NKCG---CGKSFQ 199 (200)
Q Consensus 190 ~~C~---CG~sf~ 199 (200)
-.|. ||.+|.
T Consensus 7 ~~C~~~~C~k~f~ 19 (38)
T 1bhi_A 7 FLCTAPGCGQRFT 19 (38)
T ss_dssp EECCCTTTCCEES
T ss_pred eECCCCCCCcccC
Confidence 4688 999986
No 53
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=20.30 E-value=38 Score=19.30 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=7.0
Q ss_pred CCCCCccCCC
Q psy8855 187 NIKNKCGCGK 196 (200)
Q Consensus 187 ~~~~~C~CG~ 196 (200)
+..+.|+||.
T Consensus 19 ~~~~~C~CG~ 28 (42)
T 2l0z_A 19 NSLGGCRCGK 28 (42)
T ss_dssp CTTSSBTTTT
T ss_pred cCCceecccc
Confidence 3456899984
Done!