RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8855
         (200 letters)



>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 134

 Score =  126 bits (318), Expect = 3e-38
 Identities = 77/97 (79%), Positives = 89/97 (91%)

Query: 1  MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 60
          M+YSEKV+DHYENPRNVG  +K D+ VGTGMVGAPACGDVM+LQIKV+ NG+I DAKFKT
Sbjct: 1  MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60

Query: 61 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
          YGCGSAIASSSL+TEWVKGK+L+EA +IKN+ IAEEL
Sbjct: 61 YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEEL 97


>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU)
          {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
          Length = 130

 Score =  116 bits (292), Expect = 3e-34
 Identities = 64/89 (71%), Positives = 76/89 (85%)

Query: 9  DHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIA 68
             ENPRNVG  +K    VGTG+VGAPACGDVMKLQI+V++ G I DA+FKT+GCGSAIA
Sbjct: 5  SSGENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIA 64

Query: 69 SSSLVTEWVKGKTLDEAMSIKNTDIAEEL 97
          SSSL TEWVKGKT++EA++IKNTDIA+EL
Sbjct: 65 SSSLATEWVKGKTVEEALTIKNTDIAKEL 93


>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF)
           {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 92.3 bits (229), Expect = 3e-25
 Identities = 45/94 (47%), Positives = 67/94 (71%)

Query: 98  VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 157
           ++  AA  +N ++  RGKG GLRLGV   GCSG++Y LE+VDE   ED VF+  GV++ +
Sbjct: 4   LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 63

Query: 158 NEKDLLYFNGIELDFEFDGLNKGFKFKNPNIKNK 191
           + K + + +G +LDF  +GLN+GFKF NPN+K++
Sbjct: 64  DGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKDE 97


>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
          Length = 147

 Score = 89.3 bits (221), Expect = 2e-23
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 15/120 (12%)

Query: 3   YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 62
           Y + ++DHY+NPRN GV   +        +  P CGD ++L +K++   ++ DAKF+  G
Sbjct: 11  YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65

Query: 63  CGSAIASSSLVTEWVKGKTLDEA----------MSIKNTDIAEELVTKKAAKYINKYIQK 112
           C  ++AS+S++T+ +KGK ++ A          M  K  D + +L   +A + ++K+  +
Sbjct: 66  CSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPAR 125


>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus
          pyogenes [TaxId: 1314]}
          Length = 136

 Score = 83.1 bits (205), Expect = 2e-21
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 3  YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 62
          Y   V DH + P + G  +  +       +  P CGDV+ L +K +    I D  F   G
Sbjct: 5  YMAVVADHSKRPHHHGQLDGVE----AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 59

Query: 63 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIA 94
          C  + ASSS++T+ V GK+ +EA+++ +    
Sbjct: 60 CTISTASSSMMTDAVIGKSKEEALALADIFSE 91


>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 101

 Score = 75.9 bits (186), Expect = 6e-19
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 98  VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 156
           VT KA + I K  Q+   +   LR+ V   GCSG  Y + + D   + D VF+ +GV++ 
Sbjct: 12  VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71

Query: 157 INEKDLLYFNGIELDFEFDGLNKGFKFKNP 186
           I+   + Y NG ELD+  D +  GF  +NP
Sbjct: 72  IDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101


>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon
           Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}
          Length = 89

 Score = 23.9 bits (52), Expect = 6.8
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 64  GSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKYIN 107
           G AI+ +    E V+ + L + + IK   +  ++VT +  +   
Sbjct: 35  GRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQDGRQSR 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 747,970
Number of extensions: 34207
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 13
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)