BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8856
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 291 bits (744), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 192/311 (61%), Gaps = 2/311 (0%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
M +LICGS+A+DNIM FEG+F +LPDQ+ IN+SF PTM++E+GGCAGNIAY L LL
Sbjct: 1 MATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLL 60
Query: 61 NGNPLIVSILGK-DGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPG 119
G+ ++ LG D YL + LG+S +Y++ + ++AQ I TD++NNQIT FHPG
Sbjct: 61 GGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPG 120
Query: 120 AMQLSYDDNCINNADIKIAIISPDNCCNMXXXXXXXXXXXXXXXXDPGQSLSMFTKEELX 179
AM S+ ++ DIK+AI+ PD M DPGQ L +F L
Sbjct: 121 AMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLR 180
Query: 180 XXXXXXXXXXVNEYEXXXXXXXXXXXXXXINEQVKVLIVTRGELGSDIFLNNERKIKIPC 239
VN+YE I +V+ LI+TRGE G+ I + + +IP
Sbjct: 181 RSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATI-RHRDGTEQIPA 239
Query: 240 VKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEI 299
V+A+R++DPTGCGDAFR G+L+GI + DW T GRL+SLMG+ +I+HQG Q + P+ +EI
Sbjct: 240 VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEI 299
Query: 300 DQRFKEAFGYR 310
D RF+ AFGYR
Sbjct: 300 DARFETAFGYR 310
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 290 bits (743), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 192/311 (61%), Gaps = 2/311 (0%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
M +LICGS+A+DNIM FEG+F +LPDQ+ IN+SF PTM++E+GGCAGNIAY L LL
Sbjct: 9 MATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLL 68
Query: 61 NGNPLIVSILGK-DGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPG 119
G+ ++ LG D YL + LG+S +Y++ + ++AQ I TD++NNQIT FHPG
Sbjct: 69 GGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPG 128
Query: 120 AMQLSYDDNCINNADIKIAIISPDNCCNMXXXXXXXXXXXXXXXXDPGQSLSMFTKEELX 179
AM S+ ++ DIK+AI+ PD M DPGQ L +F L
Sbjct: 129 AMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLR 188
Query: 180 XXXXXXXXXXVNEYEXXXXXXXXXXXXXXINEQVKVLIVTRGELGSDIFLNNERKIKIPC 239
VN+YE I +V+ LI+TRGE G+ I + + +IP
Sbjct: 189 RSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATI-RHRDGTEQIPA 247
Query: 240 VKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEI 299
V+A+R++DPTGCGDAFR G+L+GI + DW T GRL+SLMG+ +I+HQG Q + P+ +EI
Sbjct: 248 VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEI 307
Query: 300 DQRFKEAFGYR 310
D RF+ AFGYR
Sbjct: 308 DARFETAFGYR 318
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 136/315 (43%), Gaps = 10/315 (3%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
M + GS+A D++MRF G+FS LLP+ L K+++SF + GG AGN+A+ + +L
Sbjct: 11 MTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVL 70
Query: 61 NGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGA 120
G +V G D + Y LK G++ ++ + TA+ TDV+ QI F+PGA
Sbjct: 71 GGEVALVGAAGADFADYRDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFYPGA 130
Query: 121 MQLSYDDNCINNADI-------KIAIISPDNCCNMXXXXXXXXXXXXXXXXDPGQSLSMF 173
M + I AD+ ++ II ++ M DP Q L+
Sbjct: 131 MS---EARNIKLADVVSAIGKPELVIIGANDPEAMFLHTEECRKLGLAFAADPSQQLARL 187
Query: 174 TKEELXXXXXXXXXXXVNEYEXXXXXXXXXXXXXXINEQVKVLIVTRGELGSDIFLNNER 233
+ EE+ N+YE + Q+ + + T G G D+ +
Sbjct: 188 SGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEADVMAQIDLRVTTLGPKGVDLVEPDGT 247
Query: 234 KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHC 293
I + V DPTG GDAFR+G L G L + +L SL+ + G Q+
Sbjct: 248 TIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGTQEWQ 307
Query: 294 PSLSEIDQRFKEAFG 308
R A+G
Sbjct: 308 WDYEAAASRLAGAYG 322
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 18/309 (5%)
Query: 1 MNSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKL 59
M + C G A D I E + + N S P+ +K YGG A N A +K
Sbjct: 5 MEKITCVGHTALDYIFNVE----------KFPEPNTSIQIPSARKYYGGAAANTAVGIKK 54
Query: 60 LNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH 117
L N ++S +G D S Y ++LK L I+ + T + +I TD +NNQIT F
Sbjct: 55 LGVNSELLSCVGYDFKNSGYERYLKNLDINISKLYYSEEEETPKAWIFTDKDNNQITFFL 114
Query: 118 PGAMQLSYDDNCIN-NADIKIAIISPDNCCNMXXXXXXXXXXXXXXXXDPGQSLSMFTKE 176
GA + + N N N +I + I + D N+ DPGQ L ++KE
Sbjct: 115 WGAAKHYKELNPPNFNTEI-VHIATGDPEFNLKCAKKAYGNNLVSF--DPGQDLPQYSKE 171
Query: 177 ELXXXXXXXXXXXVNEYEXXXXXXXXXXXXXXINEQVKVLIVTRGELGSDIFLNNERKIK 236
L +N++E E+V LIVT+G GS I+ ++KI+
Sbjct: 172 MLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERVDALIVTKGSKGSVIY-TKDKKIE 230
Query: 237 IPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL 296
IPC+KA +++DPTG GD++R+G L + D G + + S + +G Q + P+
Sbjct: 231 IPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGCQTNLPTW 290
Query: 297 SEIDQRFKE 305
++ +R ++
Sbjct: 291 DKVVERLEK 299
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 91/241 (37%), Gaps = 48/241 (19%)
Query: 42 MKKEYGGCAGNIAYNLKLLNGNPLIVSILG-KDGSSYLKHLKYLGISNKYIQKINSMFTA 100
++ +GG AGN A + + S +G K YL ++ GI+ +++K
Sbjct: 51 LRPRFGGTAGNFAIVAQKFRIPFDLYSAVGXKTHREYLAXIESXGINTGHVEKFEDESGP 110
Query: 101 QCFIVTDVNNNQITIFHPGA--------------MQLSYDDNCINNA-DIKIAIISPDNC 145
C+I TD Q++ H GA + S N ++ A I+ II
Sbjct: 111 ICYIATD-GKKQVSFXHQGAXAAWAPQLADEYEYVHFSTGPNYLDXAKSIRSKII----- 164
Query: 146 CNMXXXXXXXXXXXXXXXXDPGQSLSMFTKEELXXXXXXXXXXXVNEYEXXXXXXXXXXX 205
DP Q + ++K+EL N++E
Sbjct: 165 ------------------FDPSQEIHKYSKDELKKFHEISYXSIFNDHEYRVFREXTGLS 206
Query: 206 XXXINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIIN 265
+ IVT GE GS +F + +K P + + D G GD+FR+G+ + N
Sbjct: 207 SPKV-----TTIVTNGERGSSLFXDG-KKYDFPAIPSSG--DTVGAGDSFRAGLYLALYN 258
Query: 266 N 266
Sbjct: 259 R 259
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 213 VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTT 272
VK +I+T GE G I + E I+IP D VD TG GDAF SG + G+ LD YT
Sbjct: 237 VKAVILTLGEEGV-IASDGEEIIRIPAFSED-AVDVTGAGDAFWSGFICGL---LDGYTV 291
Query: 273 GR---LSSLMGSTEISHQGGQKHCPSLSEIDQRF 303
R L + + + +I G PS +I + +
Sbjct: 292 KRSIKLGNGVAAFKIRGVGALSPVPSKEDIIKEY 325
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 31 DKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISN 88
+++N S + +GG NIA NL L ++S LG D G+ L LK I
Sbjct: 38 EEVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKGEQIIT 97
Query: 89 KYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDD 127
IQ+ T ++ + L DD
Sbjct: 98 DGIQQDKERRTTIVYVSKSTRTPDWLPYREADXYLQEDD 136
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 216 LIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRL 275
+++ RG G+ F++ R+++ + VDP G GDAF +G L G + L RL
Sbjct: 216 VVLKRGAKGAWAFVDG-RRVEGSAFAVE-AVDPVGAGDAFAAGYLAGAVWGLPVEERLRL 273
Query: 276 SSLMGSTEISHQGGQKHCPSLSEIDQRFK 304
++L+G++ + +G + P +++ K
Sbjct: 274 ANLLGASVAASRGDHEGAPYREDLEVLLK 302
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 209 INEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD 268
I K+ VT E G+ I ER + ++ +VD TG GD F SG L+G
Sbjct: 257 IAADCKIAAVTXSENGAVILKGRERYY-VNAIRIREVVDTTGAGDLFASGFLYGYTQGRS 315
Query: 269 WYTTGRLSSLMGSTEISHQGGQKHCPSLSE 298
G+L L I Q G + SLSE
Sbjct: 316 LEDCGKLGCLAAGIVI-QQIGPRPXTSLSE 344
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 214 KVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTG 273
K+ VT E GS + ER +++ +++VD TG GD + +G LFG YT+G
Sbjct: 242 KLAAVTLSEEGSVVVRGAER-VRVGASVLEQVVDTTGAGDLYAAGFLFG-------YTSG 293
Query: 274 R 274
R
Sbjct: 294 R 294
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 210 NEQVKVLIVTRGELGSDIFLNNERKIKIPCVK--ADRIVDPTGCGDAFRSGVLFGIINNL 267
N VK ++V RG + + E + +P VK ++++D T GD+F +G L +
Sbjct: 221 NAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGG 280
Query: 268 DWYTTGRLSSLMGSTEISHQGG 289
+ L ST I ++G
Sbjct: 281 SAENAAKRGHLTASTVIQYRGA 302
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 214 KVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260
K LI+ +GE G+ +F +N P + I DPTG GD F G +
Sbjct: 201 KTLIIKKGEHGALLFTDNG-IFAAPAFPLESIYDPTGAGDTFAGGFI 246
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 209 INEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD 268
+ E VK +IV RG G+ + NE + + + VDPTG GD F + D
Sbjct: 218 LEEGVKEVIVKRGNQGASYYSANE-QFHVESYPVEE-VDPTGAGDCFGGAWIACRQLGFD 275
Query: 269 WYTTGRLSSLMGSTEISHQGGQKHCPSLSEID 300
+ + ++ G+ ++ +G + L EI+
Sbjct: 276 AHRALQYANACGALAVTRRGPXEGTSRLXEIE 307
>pdb|3ALW|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I,
Mv-H-Slam(N102hR108Y) FUSION)
Length = 559
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG--------------VLFG 262
I + G L D+ L E KIKI I +G D ++S + G
Sbjct: 227 IPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGM-DLYKSNHNNVYWLTIPPMKNLALG 285
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL--SEIDQRFK 304
+IN L+W ++S + + I GG H P+ +E+D K
Sbjct: 286 VINTLEWIPRFKVSPYLFTVPIKEAGGDCHAPTYLPAEVDGDVK 329
>pdb|2ZB5|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
(Complex-Sugar- Type)
pdb|2ZB6|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
(Oligo-Sugar Type)
pdb|3ALZ|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam (Form I)
Length = 481
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG--------------VLFG 262
I + G L D+ L E KIKI I +G D ++S + G
Sbjct: 262 IPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGM-DLYKSNHNNVYWLTIPPMKNLALG 320
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL--SEIDQRFK 304
+IN L+W ++S + + I GG H P+ +E+D K
Sbjct: 321 VINTLEWIPRFKVSPYLFTVPIKEAGGDCHAPTYLPAEVDGDVK 364
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 223 LGSD--IFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLF 261
LG+D + + E + P + D +VD TG GDAF G+LF
Sbjct: 241 LGADGALLITAEGEFHFPAPRVD-VVDTTGAGDAFVGGLLF 280
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 223 LGSD--IFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLF 261
LG+D + + E + P + D +VD TG GDAF G+LF
Sbjct: 241 LGADGALLITAEGEFHFPAPRVD-VVDTTGAGDAFVGGLLF 280
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 36 SFYSPTMKKEYGGCAG-NIAYNLKLLNGNPLIVSILGKDGSS--YLKHLKYLGISNKYIQ 92
+ + +K +GG G N A + + ++ +G DG + L+ K I YI
Sbjct: 28 TLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYII 87
Query: 93 KINSMFTAQCFIVTDVN-NNQITIFHPGAMQLSYDD-----NCINNADIKIA 138
K T Q FI + N I ++ M ++ +D + I NAD +A
Sbjct: 88 KTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVA 139
>pdb|3ALX|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|C Chain C, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|D Chain D, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
Length = 559
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG--------------VLFG 262
I + G L D+ L E KIKI I +G D ++S + G
Sbjct: 227 IPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGM-DLYKSNHNNVYWLTIPPMKNLALG 285
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL--SEIDQRFK 304
+IN L+W ++S + I GG H P+ +E+D K
Sbjct: 286 VINTLEWIPRFKVSPYRFTVPIKEAGGDCHAPTYLPAEVDGDVK 329
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 214 KVLIVTRGE---LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260
+++I+TRG+ L +D + + + K D+I+D G GDAF +G +
Sbjct: 280 RLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFI 329
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 214 KVLIVTRGE---LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260
+++I+TRG+ L +D + + + K D+I+D G GDAF +G +
Sbjct: 280 RLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFI 329
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 214 KVLIVTRGE---LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260
+++I+TRG+ L +D + + + K D+I+D G GDAF +G +
Sbjct: 278 RLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFI 327
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 242 ADRIVDPTGCGDAFRSGVLFGI 263
A++IVD G GDAF G L+G+
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYGL 328
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 242 ADRIVDPTGCGDAFRSGVLFGI 263
A++IVD G GDAF G L+G+
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYGL 328
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 214 KVLIVTRG-------ELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINN 266
+++I+T+G E G+D N R+ + + +++VD G GDAF G L ++ +
Sbjct: 275 RIVIITQGSDPVLLIEAGTD----NVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQS 330
>pdb|2RKC|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin
Length = 462
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG--------------VLFG 262
I + G L D+ L E KIKI I +G D ++S + G
Sbjct: 252 IPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGM-DLYKSNHNNVYWLTIPPMKNLALG 310
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL--SEIDQRFK 304
+IN L+W ++S + + I G H P+ +E+D K
Sbjct: 311 VINTLEWIPRFKVSPYLFTVPIKEAGEDCHAPTYLPAEVDGDVK 354
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 81 LKYLGISNKYIQKINSMFTAQCFIVTDVNNNQI 113
L+YLG+SN ++K+ + + + DV+NN +
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165
>pdb|3INB|A Chain A, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3INB|B Chain B, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
Length = 466
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG--------------VLFG 262
I + G L D+ L E KIKI I +G D ++S + G
Sbjct: 256 IPSYGVLSVDLSLTVELKIKIASGFGPLITHGSGM-DLYKSNHNNVYWLTIPPMKNLALG 314
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL--SEIDQRFK 304
+IN L+W ++S + + I G H P+ +E+D K
Sbjct: 315 VINTLEWIPRFKVSPYLFTVPIKEAGEDCHAPTYLPAEVDGDVK 358
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 214 KVLIVTRGELGSDIFLNNERKIK-IPCVKADRIVDPTGCGDAFRSGVLFGII--NNLDWY 270
+V+I+T G G + E + K IP K + VD TG GD+F + F + NL
Sbjct: 239 QVVIITLGAEGCVVLSQTEPEPKHIPTEKV-KAVDTTGAGDSFVGALAFYLAYYPNLSLE 297
Query: 271 TTGRLSSLMGSTEISHQGGQKHCP 294
S+ + + + G Q P
Sbjct: 298 DMLNRSNFIAAVSVQAAGTQSSYP 321
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 228 FLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
+ NE + +P + + D TG GDAF + +L GI
Sbjct: 223 LIKNETVVDVPSYNVNPL-DTTGAGDAFXAALLVGI 257
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 215 VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
VL+ E G+D + + + R+VD G GD F + V+F +
Sbjct: 220 VLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 268
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 228 FLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
+ NE + +P + + D TG GDAF + +L GI
Sbjct: 223 LIKNETVVDVPSYNVNPL-DTTGAGDAFXAALLVGI 257
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 214 KVLIVTRGELGSDIFLNNE--RKIKIPCVKADRIVDPTGCGDAFRSGVL 260
+V++ TR ++ S + + + +P + D+++D G GDAF G L
Sbjct: 261 RVVVFTR-DIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFL 308
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 244 RIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEID 300
+++ G GD++ S L+ +I+ T + S S +S PS+ EI+
Sbjct: 264 KVLKTFGAGDSYASAFLYALISGKGIETALKYGSASASIVVSKHSSSDAXPSVEEIE 320
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 215 VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
VL+ E G+D + + + R+VD G GD F + V+F +
Sbjct: 220 VLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 268
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 215 VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
VL+ E G+D + + + R+VD G GD F + V+F +
Sbjct: 235 VLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 283
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 215 VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
VL+ E G+D + + + R+VD G GD F + V+F +
Sbjct: 234 VLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSL 282
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 213 VKVLIVTRGELGS--DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWY 270
K+++V G G+ D + R P + +VD G GD F GV+ +++ L
Sbjct: 246 AKLVVVKLGAEGAYFDGEAGSGRVAGFPVAE---VVDTVGAGDGFAVGVISALLDGLGVP 302
Query: 271 TTGRLSSLMGSTEISHQGGQKHCPSLSEID 300
+ + +G+ + G + P+ +E++
Sbjct: 303 EAVKRGAWIGARAVQVLGDSEGLPTRAELN 332
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 213 VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTT 272
VK +++ G+ G I + K+P V +D G GD F SG + ++ +
Sbjct: 223 VKTVVIKTGKDGCFI-KRGDXTXKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLREC 281
Query: 273 GRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301
R ++ + + G + ++Q
Sbjct: 282 ARFANATAAISVLSVGATTGVKNRKLVEQ 310
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 242 ADRIVDPTGCGDAFRSGVLFGI 263
A++IVD G GDAF G L+ +
Sbjct: 327 AEKIVDTNGAGDAFVGGFLYAL 348
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 242 ADRIVDPTGCGDAFRSGVLFGI 263
A++IVD G GDAF G L+ +
Sbjct: 307 AEKIVDTNGAGDAFVGGFLYAL 328
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 42 MKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLG 85
+K +GG NIA N + N SILG D G S ++H K +G
Sbjct: 37 VKISFGGVCRNIAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,160,449
Number of Sequences: 62578
Number of extensions: 310372
Number of successful extensions: 629
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 53
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)