Query psy8856
Match_columns 312
No_of_seqs 108 out of 1199
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:06:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00292 ribokinase; Provision 100.0 1.7E-45 3.7E-50 328.5 31.1 293 1-304 16-325 (326)
2 PRK11142 ribokinase; Provision 100.0 2.7E-45 5.9E-50 324.5 31.7 287 1-304 3-304 (306)
3 PLN02323 probable fructokinase 100.0 3.7E-44 8.1E-49 320.4 30.6 291 1-307 11-329 (330)
4 PLN02813 pfkB-type carbohydrat 100.0 8.1E-44 1.8E-48 325.3 29.1 304 1-308 70-410 (426)
5 cd01174 ribokinase Ribokinase 100.0 7.4E-43 1.6E-47 307.0 31.1 277 2-295 1-292 (292)
6 cd01942 ribokinase_group_A Rib 100.0 8.2E-43 1.8E-47 304.7 30.3 274 2-289 1-278 (279)
7 PLN02341 pfkB-type carbohydrat 100.0 1.4E-42 2.9E-47 321.5 30.8 300 1-307 73-411 (470)
8 PLN02543 pfkB-type carbohydrat 100.0 1.1E-42 2.3E-47 319.6 29.2 305 2-309 127-493 (496)
9 PLN02967 kinase 100.0 1.4E-42 3E-47 321.5 29.4 298 2-302 198-544 (581)
10 cd01944 YegV_kinase_like YegV- 100.0 2.5E-42 5.5E-47 303.2 29.7 273 2-288 1-289 (289)
11 COG0524 RbsK Sugar kinases, ri 100.0 6.8E-42 1.5E-46 303.5 29.8 295 2-306 1-310 (311)
12 cd01945 ribokinase_group_B Rib 100.0 7.2E-42 1.6E-46 299.6 29.2 277 2-295 1-284 (284)
13 cd01168 adenosine_kinase Adeno 100.0 2E-42 4.3E-47 307.0 25.6 282 2-290 3-310 (312)
14 PRK09850 pseudouridine kinase; 100.0 7.7E-42 1.7E-46 303.2 27.8 288 2-306 6-309 (313)
15 PRK09434 aminoimidazole ribosi 100.0 1.5E-41 3.2E-46 300.4 27.9 275 2-299 4-303 (304)
16 PLN02379 pfkB-type carbohydrat 100.0 1.3E-41 2.9E-46 306.0 26.5 303 1-305 20-357 (367)
17 PTZ00247 adenosine kinase; Pro 100.0 2.2E-41 4.7E-46 304.1 24.6 285 1-291 6-336 (345)
18 cd01167 bac_FRK Fructokinases 100.0 7.3E-41 1.6E-45 294.7 26.7 268 2-289 1-294 (295)
19 cd01166 KdgK 2-keto-3-deoxyglu 100.0 2.1E-40 4.5E-45 291.7 27.9 271 2-289 1-293 (294)
20 PRK15074 inosine/guanosine kin 100.0 7.1E-41 1.5E-45 304.0 25.2 295 2-298 35-425 (434)
21 TIGR02152 D_ribokin_bact ribok 100.0 5.1E-40 1.1E-44 289.1 29.4 278 7-300 1-293 (293)
22 cd01947 Guanosine_kinase_like 100.0 5.8E-40 1.2E-44 284.7 28.8 262 2-290 1-265 (265)
23 cd01939 Ketohexokinase Ketohex 100.0 3.7E-40 8.1E-45 289.5 26.6 272 2-289 1-289 (290)
24 PRK09954 putative kinase; Prov 100.0 6.5E-40 1.4E-44 296.2 28.4 286 2-304 59-360 (362)
25 TIGR03828 pfkB 1-phosphofructo 100.0 1.6E-39 3.4E-44 287.5 29.1 275 5-305 4-301 (304)
26 PRK09513 fruK 1-phosphofructok 100.0 4.2E-39 9.2E-44 285.6 29.1 287 1-312 4-312 (312)
27 KOG2855|consensus 100.0 2.2E-39 4.9E-44 276.2 26.0 296 1-307 10-328 (330)
28 TIGR02198 rfaE_dom_I rfaE bifu 100.0 5.2E-39 1.1E-43 285.5 29.3 280 2-303 9-314 (315)
29 PF00294 PfkB: pfkB family car 100.0 3.1E-40 6.8E-45 291.4 20.3 278 2-295 3-300 (301)
30 PRK13508 tagatose-6-phosphate 100.0 7.4E-39 1.6E-43 283.6 27.7 281 1-306 1-304 (309)
31 PRK10294 6-phosphofructokinase 100.0 1.5E-38 3.3E-43 281.6 28.6 280 1-305 3-306 (309)
32 cd01940 Fructoselysine_kinase_ 100.0 1.2E-38 2.5E-43 276.4 26.9 254 2-290 1-264 (264)
33 cd01172 RfaE_like RfaE encodes 100.0 2.6E-38 5.6E-43 279.7 28.7 270 2-291 1-296 (304)
34 TIGR03168 1-PFK hexose kinase, 100.0 9.5E-38 2.1E-42 275.9 28.8 277 5-306 4-302 (303)
35 PRK09813 fructoselysine 6-kina 100.0 1.4E-38 3E-43 275.2 22.8 254 1-290 1-260 (260)
36 cd01943 MAK32 MAK32 kinase. M 100.0 1.1E-38 2.4E-43 283.9 21.0 274 2-299 1-312 (328)
37 cd01164 FruK_PfkB_like 1-phosp 100.0 1.4E-37 3E-42 273.1 27.4 265 1-289 1-288 (289)
38 TIGR01231 lacC tagatose-6-phos 100.0 3E-37 6.4E-42 273.4 27.4 282 3-306 2-304 (309)
39 PRK11316 bifunctional heptose 100.0 1.4E-36 3E-41 283.8 27.6 284 1-305 11-314 (473)
40 cd01941 YeiC_kinase_like YeiC- 100.0 9E-37 2E-41 267.8 24.6 268 2-285 1-287 (288)
41 PLN02630 pfkB-type carbohydrat 100.0 3.1E-36 6.6E-41 266.9 27.3 264 2-306 13-292 (335)
42 COG1105 FruK Fructose-1-phosph 100.0 6.8E-36 1.5E-40 255.0 27.2 284 1-310 1-308 (310)
43 PLN02548 adenosine kinase 100.0 1.6E-36 3.4E-41 271.4 24.1 283 6-291 1-325 (332)
44 cd01946 ribokinase_group_C Rib 100.0 8.6E-36 1.9E-40 260.1 23.6 265 2-290 1-276 (277)
45 cd01937 ribokinase_group_D Rib 100.0 1.5E-35 3.2E-40 255.5 23.2 250 2-285 1-254 (254)
46 KOG2854|consensus 100.0 1.9E-33 4E-38 237.0 19.1 285 3-290 9-335 (343)
47 KOG2947|consensus 100.0 1.4E-31 2.9E-36 215.3 22.9 272 3-290 7-299 (308)
48 COG2870 RfaE ADP-heptose synth 100.0 1.6E-30 3.5E-35 223.9 24.0 278 2-301 12-309 (467)
49 cd00287 ribokinase_pfkB_like r 100.0 1.9E-28 4.1E-33 202.8 20.7 185 2-264 1-196 (196)
50 PRK12413 phosphomethylpyrimidi 99.8 5.9E-18 1.3E-22 145.6 16.7 210 63-286 3-242 (253)
51 PRK12412 pyridoxal kinase; Rev 99.8 5.6E-17 1.2E-21 140.5 19.8 211 65-286 3-246 (268)
52 TIGR00097 HMP-P_kinase phospho 99.7 7.5E-17 1.6E-21 138.7 15.7 140 145-286 79-240 (254)
53 PRK08573 phosphomethylpyrimidi 99.7 1.6E-16 3.5E-21 146.9 18.9 139 145-285 83-243 (448)
54 cd01173 pyridoxal_pyridoxamine 99.7 6.8E-17 1.5E-21 139.1 14.7 140 145-285 87-250 (254)
55 cd01169 HMPP_kinase 4-amino-5- 99.7 3E-16 6.6E-21 134.2 17.7 149 134-284 68-239 (242)
56 PRK05756 pyridoxamine kinase; 99.7 1.3E-16 2.9E-21 139.6 14.5 140 145-286 89-255 (286)
57 PRK07105 pyridoxamine kinase; 99.7 5.5E-16 1.2E-20 135.6 15.8 158 146-305 91-278 (284)
58 PRK06427 bifunctional hydroxy- 99.7 3.9E-16 8.5E-21 135.3 14.5 140 145-286 85-248 (266)
59 PRK08176 pdxK pyridoxal-pyrido 99.7 1.6E-15 3.5E-20 132.2 15.2 150 134-286 88-266 (281)
60 TIGR00687 pyridox_kin pyridoxa 99.7 1.1E-15 2.4E-20 133.9 13.9 149 133-283 73-253 (286)
61 PRK12616 pyridoxal kinase; Rev 99.7 2.6E-15 5.6E-20 130.2 14.7 140 145-286 86-249 (270)
62 PTZ00347 phosphomethylpyrimidi 99.5 1.7E-12 3.6E-17 122.3 19.1 139 145-286 311-478 (504)
63 COG0351 ThiD Hydroxymethylpyri 99.5 1.2E-11 2.6E-16 104.0 18.7 149 133-285 74-244 (263)
64 PLN02898 HMP-P kinase/thiamin- 99.4 1.6E-12 3.5E-17 122.3 14.2 141 145-287 90-254 (502)
65 PTZ00344 pyridoxal kinase; Pro 99.4 2.8E-12 6E-17 112.8 14.6 138 146-286 93-258 (296)
66 cd01171 YXKO-related B.subtili 99.4 1.2E-12 2.7E-17 112.6 12.1 152 133-288 76-237 (254)
67 PRK09517 multifunctional thiam 99.4 4.2E-12 9.1E-17 124.4 15.7 150 133-286 312-484 (755)
68 KOG3009|consensus 99.4 3.4E-12 7.4E-17 112.5 11.7 230 2-284 342-598 (614)
69 PRK14713 multifunctional hydro 99.4 1.8E-11 3.8E-16 115.8 16.3 130 146-278 114-264 (530)
70 TIGR00196 yjeF_cterm yjeF C-te 99.3 6.7E-11 1.5E-15 102.8 15.8 166 133-306 91-269 (272)
71 PF08543 Phos_pyr_kin: Phospho 99.3 2.9E-11 6.2E-16 103.4 13.2 139 145-285 72-233 (246)
72 PLN02978 pyridoxal kinase 99.3 4.1E-11 8.9E-16 105.7 13.3 151 134-286 89-267 (308)
73 cd01170 THZ_kinase 4-methyl-5- 99.2 9E-10 1.9E-14 93.8 14.9 149 133-285 48-221 (242)
74 PTZ00493 phosphomethylpyrimidi 99.1 8.8E-09 1.9E-13 90.3 16.8 153 133-286 75-285 (321)
75 COG2240 PdxK Pyridoxal/pyridox 98.9 3.5E-08 7.6E-13 83.7 13.6 137 146-285 89-249 (281)
76 PRK09355 hydroxyethylthiazole 98.8 4.3E-07 9.3E-12 78.4 15.5 133 148-284 73-224 (263)
77 TIGR00694 thiM hydroxyethylthi 98.6 6.4E-07 1.4E-11 76.7 13.1 135 146-284 66-219 (249)
78 KOG2598|consensus 97.8 0.00011 2.4E-09 65.5 8.9 127 157-284 117-281 (523)
79 PF02110 HK: Hydroxyethylthiaz 97.8 0.00069 1.5E-08 57.3 13.0 133 146-281 66-216 (246)
80 COG2145 ThiM Hydroxyethylthiaz 97.7 0.00083 1.8E-08 56.4 12.1 135 140-277 66-219 (265)
81 PRK14039 ADP-dependent glucoki 97.6 0.0021 4.5E-08 58.9 14.2 161 40-203 84-297 (453)
82 PRK10565 putative carbohydrate 97.6 0.0032 7E-08 59.5 15.2 141 134-283 320-472 (508)
83 KOG2599|consensus 97.5 0.0014 3E-08 55.1 10.5 129 146-276 97-253 (308)
84 PF01256 Carb_kinase: Carbohyd 97.4 0.0073 1.6E-07 51.4 14.4 163 132-303 65-240 (242)
85 PRK03979 ADP-specific phosphof 97.4 0.003 6.6E-08 58.1 12.4 45 157-201 262-307 (463)
86 TIGR02045 P_fruct_ADP ADP-spec 97.2 0.013 2.9E-07 53.7 14.4 52 149-200 239-292 (446)
87 PRK14038 ADP-dependent glucoki 97.2 0.012 2.6E-07 54.0 13.9 68 133-200 223-300 (453)
88 PF04587 ADP_PFK_GK: ADP-speci 96.2 0.071 1.5E-06 49.6 11.7 69 133-201 208-293 (444)
89 COG0063 Predicted sugar kinase 95.0 0.8 1.7E-05 39.9 12.8 168 133-306 100-280 (284)
90 cd01938 ADPGK_ADPPFK ADP-depen 93.9 0.21 4.5E-06 46.3 7.1 160 42-201 101-287 (445)
91 KOG3974|consensus 93.2 0.77 1.7E-05 38.9 8.6 149 133-287 100-268 (306)
92 KOG3361|consensus 72.6 5.5 0.00012 30.0 3.5 64 247-310 85-151 (157)
93 PRK10076 pyruvate formate lyas 58.8 52 0.0011 27.4 7.2 64 136-202 40-112 (213)
94 KOG0174|consensus 55.8 5.1 0.00011 32.3 0.7 46 247-292 145-191 (224)
95 PRK14057 epimerase; Provisiona 53.4 84 0.0018 27.0 7.7 120 58-187 15-157 (254)
96 PHA00438 hypothetical protein 52.1 12 0.00025 25.3 1.8 17 248-264 46-62 (81)
97 KOG1145|consensus 49.5 1.8E+02 0.004 28.1 9.7 104 59-167 148-261 (683)
98 TIGR00444 mazG MazG family pro 49.1 42 0.0009 28.7 5.2 56 251-306 185-247 (248)
99 COG1433 Uncharacterized conser 45.8 56 0.0012 24.5 4.9 43 43-88 47-89 (121)
100 COG1180 PflA Pyruvate-formate 45.1 74 0.0016 27.4 6.3 67 134-203 83-158 (260)
101 PF00070 Pyr_redox: Pyridine n 44.4 43 0.00094 22.5 3.9 40 50-89 11-58 (80)
102 PF10911 DUF2717: Protein of u 42.6 20 0.00042 24.3 1.8 18 248-265 46-63 (77)
103 PF10678 DUF2492: Protein of u 42.2 59 0.0013 22.3 4.1 33 53-85 26-60 (78)
104 PF02775 TPP_enzyme_C: Thiamin 42.2 24 0.00053 27.3 2.7 118 48-166 31-153 (153)
105 TIGR00282 metallophosphoestera 39.3 2.1E+02 0.0046 24.7 8.1 106 48-170 46-155 (266)
106 COG1331 Highly conserved prote 38.9 52 0.0011 32.3 4.6 50 146-195 30-89 (667)
107 PF03190 Thioredox_DsbH: Prote 38.0 28 0.0006 27.6 2.3 50 149-198 27-86 (163)
108 PRK12333 nucleoside triphospha 36.8 54 0.0012 27.0 3.9 29 250-278 165-193 (204)
109 TIGR03853 matur_matur probable 36.7 83 0.0018 21.5 4.1 34 52-85 23-58 (77)
110 COG1058 CinA Predicted nucleot 35.6 98 0.0021 26.6 5.4 35 48-82 21-55 (255)
111 PF03853 YjeF_N: YjeF-related 33.9 56 0.0012 26.0 3.5 44 45-88 36-84 (169)
112 cd00562 NifX_NifB This CD repr 33.2 58 0.0013 22.9 3.3 39 47-88 47-85 (102)
113 TIGR01093 aroD 3-dehydroquinat 31.2 2.5E+02 0.0055 23.4 7.3 88 135-226 93-193 (228)
114 PRK11869 2-oxoacid ferredoxin 30.7 3.7E+02 0.0079 23.5 9.6 126 48-173 63-197 (280)
115 COG4809 Archaeal ADP-dependent 30.1 34 0.00074 31.1 1.8 57 147-203 253-311 (466)
116 cd01483 E1_enzyme_family Super 30.1 2.3E+02 0.005 21.4 6.4 32 132-163 87-118 (143)
117 COG0036 Rpe Pentose-5-phosphat 29.8 1.7E+02 0.0038 24.5 5.8 53 133-188 83-135 (220)
118 PF02579 Nitro_FeMo-Co: Dinitr 28.5 53 0.0011 22.7 2.3 42 44-88 36-77 (94)
119 PRK08091 ribulose-phosphate 3- 28.5 2.4E+02 0.0052 23.8 6.5 114 64-187 14-143 (228)
120 KOG3040|consensus 28.4 1.7E+02 0.0038 24.4 5.4 112 53-167 28-146 (262)
121 PRK06732 phosphopantothenate-- 27.7 63 0.0014 27.2 3.0 47 1-68 1-47 (229)
122 PRK08883 ribulose-phosphate 3- 27.2 2.6E+02 0.0057 23.3 6.6 53 133-188 80-132 (220)
123 COG1921 SelA Selenocysteine sy 26.8 96 0.0021 28.5 4.1 46 148-193 176-222 (395)
124 PRK08745 ribulose-phosphate 3- 26.6 2.5E+02 0.0055 23.5 6.4 53 133-188 84-136 (223)
125 PF02593 dTMP_synthase: Thymid 26.6 3.8E+02 0.0083 22.4 10.1 128 129-276 46-177 (217)
126 PF02659 DUF204: Domain of unk 26.5 1.3E+02 0.0028 19.5 3.8 25 253-278 4-28 (67)
127 PRK09562 mazG nucleoside triph 26.3 94 0.002 26.8 3.8 58 250-307 193-257 (262)
128 PRK09628 oorB 2-oxoglutarate-a 25.4 4.6E+02 0.0099 22.8 10.2 124 46-169 69-201 (277)
129 PRK06598 aspartate-semialdehyd 25.3 3.5E+02 0.0076 24.7 7.4 37 133-170 64-101 (369)
130 TIGR02826 RNR_activ_nrdG3 anae 25.0 3.3E+02 0.0071 21.1 6.8 54 137-194 64-119 (147)
131 TIGR02177 PorB_KorB 2-oxoacid: 24.7 4.8E+02 0.01 22.9 9.4 123 48-170 56-187 (287)
132 cd04924 ACT_AK-Arch_2 ACT doma 24.7 1.8E+02 0.004 18.1 4.9 30 64-93 1-37 (66)
133 PRK03673 hypothetical protein; 24.2 1.8E+02 0.0039 26.9 5.4 48 49-96 22-69 (396)
134 PF11469 Ribonucleas_3_2: Ribo 24.1 1.1E+02 0.0023 22.2 3.0 32 246-277 53-85 (120)
135 cd05565 PTS_IIB_lactose PTS_II 23.8 1.1E+02 0.0025 21.9 3.3 37 133-169 46-83 (99)
136 cd04919 ACT_AK-Hom3_2 ACT doma 23.8 2E+02 0.0043 18.1 4.9 29 65-93 2-37 (66)
137 PF13344 Hydrolase_6: Haloacid 23.6 1.8E+02 0.0039 20.7 4.4 40 50-89 19-59 (101)
138 PF13808 DDE_Tnp_1_assoc: DDE_ 23.5 1.7E+02 0.0038 20.4 4.2 56 252-307 22-77 (90)
139 PRK08005 epimerase; Validated 23.4 3.1E+02 0.0068 22.8 6.3 52 133-187 80-131 (210)
140 PRK11866 2-oxoacid ferredoxin 23.3 5E+02 0.011 22.6 9.6 123 48-170 62-193 (279)
141 cd00885 cinA Competence-damage 23.2 2.4E+02 0.0052 22.4 5.4 35 49-83 20-54 (170)
142 PRK01215 competence damage-ind 23.1 2.2E+02 0.0048 24.5 5.6 47 49-95 24-70 (264)
143 PF06626 DUF1152: Protein of u 22.8 3.4E+02 0.0074 24.0 6.6 80 4-88 28-120 (297)
144 PF02515 CoA_transf_3: CoA-tra 22.7 1.4E+02 0.003 24.2 4.1 52 162-220 1-55 (191)
145 PRK12334 nucleoside triphospha 22.5 1.3E+02 0.0027 26.3 3.9 30 250-279 226-255 (277)
146 TIGR00177 molyb_syn molybdenum 22.4 2.5E+02 0.0055 21.4 5.3 36 49-84 28-63 (144)
147 PF10627 CsgE: Curli assembly 22.2 1.5E+02 0.0033 21.7 3.7 50 67-116 11-63 (107)
148 COG2117 Predicted subunit of t 21.6 1.2E+02 0.0025 24.2 3.1 43 47-89 9-55 (198)
149 PRK13575 3-dehydroquinate dehy 21.2 5E+02 0.011 22.0 7.3 78 144-225 110-199 (238)
150 PF11167 DUF2953: Protein of u 20.4 68 0.0015 19.8 1.4 18 248-265 2-19 (53)
No 1
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=1.7e-45 Score=328.50 Aligned_cols=293 Identities=20% Similarity=0.299 Sum_probs=245.4
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
++|+++|.+++|++..++ ++|. ++ .+.+.......+||.+.|+|.+|++||.++.++|.+|+| ++.++
T Consensus 16 ~~vlviG~~~vD~~~~~~-~~~~---~~------~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~ 85 (326)
T PTZ00292 16 PDVVVVGSSNTDLIGYVD-RMPQ---VG------ETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTI 85 (326)
T ss_pred CCEEEEccceeeEEEecC-CCCC---CC------CceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHH
Confidence 479999999999999998 7654 22 234455667889999999999999999999999999999 78899
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEe-cCCCeeEEEeCCccccCCccccCC----cCC-ceEEEECCCC-hHHHHHH
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTD-VNNNQITIFHPGAMQLSYDDNCIN----NAD-IKIAIISPDN-CCNMIKH 151 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~-~~~~~~~ 151 (312)
+.|++.||+++++...++.+|+++++.++ .++++.+..++++...++++.+.. +.. +++++++... .+...++
T Consensus 86 ~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 165 (326)
T PTZ00292 86 KNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQNICKYLICQNEIPLETTLDA 165 (326)
T ss_pred HHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhhhCCEEEECCCCCHHHHHHH
Confidence 99999999999997777778999999988 778888877777666666655432 445 7888887543 4777888
Q ss_pred HHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHH-------HHhh-cCCEEEEeeCCC
Q psy8856 152 IKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQ-------KINE-QVKVLIVTRGEL 223 (312)
Q Consensus 152 ~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~-------~l~~-g~~~vvvt~G~~ 223 (312)
++.++++++++++|++++...|..+.+.++++++|++++|++|++.+++....+.+ .+.+ +++.++||+|++
T Consensus 166 ~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~ 245 (326)
T PTZ00292 166 LKEAKERGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGAN 245 (326)
T ss_pred HHHHHHcCCEEEEECCCCccccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 99999999999999987665555567889999999999999999999886432221 2222 889999999999
Q ss_pred ceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHH
Q psy8856 224 GSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRF 303 (312)
Q Consensus 224 G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~ 303 (312)
|++++++++..+++|+++++ ++||+||||+|.|||++++++|+++++|+++|+++|++++++.|+..+.|+.+++++.+
T Consensus 246 Ga~~~~~~~~~~~~~~~~~~-vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~~ 324 (326)
T PTZ00292 246 GCLIVEKENEPVHVPGKRVK-AVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAISVTRHGTQSSYPHPSELPADV 324 (326)
T ss_pred cEEEEeCCCceEEccCCccc-cCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHh
Confidence 99998872345899999886 99999999999999999999999999999999999999999999987789999998765
Q ss_pred H
Q psy8856 304 K 304 (312)
Q Consensus 304 ~ 304 (312)
+
T Consensus 325 ~ 325 (326)
T PTZ00292 325 K 325 (326)
T ss_pred c
Confidence 4
No 2
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=2.7e-45 Score=324.55 Aligned_cols=287 Identities=18% Similarity=0.250 Sum_probs=242.9
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
.+|+++|++++|++..++ ++|. + +...+.......+||++.|+|.+|++||.++.++|.+|+| |..++
T Consensus 3 ~~i~~iG~~~~D~~~~~~-~~p~---~------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~ 72 (306)
T PRK11142 3 GKLVVLGSINADHVLNLE-SFPR---P------GETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMR 72 (306)
T ss_pred CcEEEECCceeeEEEEeC-CCCC---C------CCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHH
Confidence 159999999999999998 7754 2 2344456667889999999999999999999999999999 78899
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC----CcCCceEEEECCCC-hHHHHHHHH
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI----NNADIKIAIISPDN-CCNMIKHIK 153 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~ 153 (312)
+.|+++||+++++...++.+|+.+++.+++++++.+..+++....++++.+. .+..+++++++... .+.+.++++
T Consensus 73 ~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~ 152 (306)
T PRK11142 73 QQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADALLMQLETPLETVLAAAK 152 (306)
T ss_pred HHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHH
Confidence 9999999999999888888999999989888888888777765556655442 25788899988654 467788889
Q ss_pred HHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH-------HHHh-hcCCEEEEeeCCCce
Q psy8856 154 KILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL-------QKIN-EQVKVLIVTRGELGS 225 (312)
Q Consensus 154 ~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~-------~~l~-~g~~~vvvt~G~~G~ 225 (312)
.+++.+.++++|++..... ...+++++|++++|++|++.+++....+. +.+. .+++.++||+|++|+
T Consensus 153 ~a~~~g~~v~~d~~~~~~~-----~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~ 227 (306)
T PRK11142 153 IAKQHGTKVILNPAPAREL-----PDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGV 227 (306)
T ss_pred HHHHcCCEEEEECCCCccc-----CHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcE
Confidence 9999999999999754322 25688999999999999999988643322 1222 289999999999999
Q ss_pred EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHH
Q psy8856 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFK 304 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~ 304 (312)
+++++ ++.+++|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+.+|++.|+..+.|+.++++++++
T Consensus 228 ~~~~~-~~~~~~~~~~v~-vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 228 WLSEN-GEGQRVPGFRVQ-AVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred EEEeC-CcceeccCCCcc-cccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence 99888 888899999986 999999999999999999999999999999999999999999999876789999988776
No 3
>PLN02323 probable fructokinase
Probab=100.00 E-value=3.7e-44 Score=320.36 Aligned_cols=291 Identities=22% Similarity=0.289 Sum_probs=238.3
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
|+|+++|+.++|++..++ ++|. .....+...+||++.|+|.+|++||.++.++|.+|+| ++.++
T Consensus 11 ~~i~~iG~~~vD~~~~~~-~~~~-------------~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~ 76 (330)
T PLN02323 11 SLVVCFGEMLIDFVPTVS-GVSL-------------AEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLA 76 (330)
T ss_pred CcEEEechhhhhhccCCC-CCCc-------------ccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHH
Confidence 689999999999997776 4432 0123446889999999999999999999999999998 78899
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeC--CccccCCccccC--CcCCceEEEECCC------ChHHH
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP--GAMQLSYDDNCI--NNADIKIAIISPD------NCCNM 148 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~ 148 (312)
+.|++.||+++++.+.++.+|+.+++..++++++.+.++. ++...++.+++. .++.+++++++.. .....
T Consensus 77 ~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (330)
T PLN02323 77 DILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCRSAH 156 (330)
T ss_pred HHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHHHHH
Confidence 9999999999999888888999999988888888776653 333334444443 2456777766532 12455
Q ss_pred HHHHHHHHhcCCcEEEcCCCCcccCC-----HHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHH----HhhcCCEEEEe
Q psy8856 149 IKHIKKILKLKIPFIFDPGQSLSMFT-----KEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQK----INEQVKVLIVT 219 (312)
Q Consensus 149 ~~~~~~~~~~~~~v~~D~~~~~~~~~-----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~----l~~g~~~vvvt 219 (312)
..+++.+++.+.++++|++++...|. .+.++++++++|++++|++|++.+++....+.++ +..+++.+|||
T Consensus 157 ~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~g~~~vvvt 236 (330)
T PLN02323 157 LAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDTVVKLWHPNLKLLLVT 236 (330)
T ss_pred HHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHHHHHHHhcCCCEEEEe
Confidence 67888889899999999998766653 2446778899999999999999998865433222 23489999999
Q ss_pred eCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCC-------HHHHHHHHHHHhchheeeccCCCC
Q psy8856 220 RGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD-------WYTTGRLSSLMGSTEISHQGGQKH 292 (312)
Q Consensus 220 ~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~-------~~~a~~~a~a~aa~~~~~~g~~~~ 292 (312)
+|++|++++++ ++.+++|+++++ ++||+||||+|.|||++++++|++ +++|+++|+++|+++|++.|+..+
T Consensus 237 ~G~~G~~~~~~-~~~~~~~~~~v~-vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~ 314 (330)
T PLN02323 237 EGEEGCRYYTK-DFKGRVEGFKVK-AVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGAIPA 314 (330)
T ss_pred cCCCceEEEeC-CCceEeCCccCC-CCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccCCccC
Confidence 99999999998 777889999886 999999999999999999999986 899999999999999999999777
Q ss_pred CCChHHHHHHHHHhh
Q psy8856 293 CPSLSEIDQRFKEAF 307 (312)
Q Consensus 293 ~~~~~ev~~~~~~~~ 307 (312)
.|+.+|+++++++..
T Consensus 315 ~~~~~~v~~~l~~~~ 329 (330)
T PLN02323 315 LPTKEAVLKLLKKAV 329 (330)
T ss_pred CCCHHHHHHHHHHhc
Confidence 899999999887653
No 4
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.1e-44 Score=325.26 Aligned_cols=304 Identities=17% Similarity=0.208 Sum_probs=244.1
Q ss_pred CcEeeecceeeeeEEecCCc-------ccCCC----CccccccceeeeecCCcccccCCchHHHHHHHHHhC--------
Q psy8856 1 MNSLICGSLAFDNIMRFEGK-------FSNSL----LPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLN-------- 61 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG-------- 61 (312)
++|+++|++++|++..++ + +|..- ...+...+.++.........+||++.|+|++|++||
T Consensus 70 ~~vl~iG~~~vDi~~~v~-~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~~~ 148 (426)
T PLN02813 70 WDVLGLGQAMVDFSGMVD-DEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAGPA 148 (426)
T ss_pred ceEEEeCCceeEEEEecC-HHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccCCC
Confidence 579999999999999999 5 55310 001111122333445667889999999999999999
Q ss_pred CCceEEEEeecC--hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC--CcCCceE
Q psy8856 62 GNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI--NNADIKI 137 (312)
Q Consensus 62 ~~~~~~~~vG~d--~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 137 (312)
.++.++|.+|+| |+.+++.|++.||++.++.. ...+|+.++++.++++++.+..+.+....++.+++. .++.+++
T Consensus 149 ~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~~~~i~~adi 227 (426)
T PLN02813 149 LNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCLASAISKSRV 227 (426)
T ss_pred CcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceeeeccCchhhCCccccCHHHHhcCCE
Confidence 799999999999 88899999999999988764 445899999999988998888887776555443332 2578889
Q ss_pred EEECCC------ChHHHHHHHHHHHhcCCcEEEcCCCCcc--cCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC-CH--
Q psy8856 138 AIISPD------NCCNMIKHIKKILKLKIPFIFDPGQSLS--MFTKEELIKIIKKSSYIIVNEYESKLLVSKTSL-SL-- 206 (312)
Q Consensus 138 ~~~~~~------~~~~~~~~~~~~~~~~~~v~~D~~~~~~--~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~-~~-- 206 (312)
+++++. ..+.+.++++.+++.+.++++|+.+... .+....+..+++++|++++|++|++.+++.... +.
T Consensus 228 v~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~~~~~~~~ 307 (426)
T PLN02813 228 LVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGLGSEESPES 307 (426)
T ss_pred EEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCCCCCCHHH
Confidence 988752 2366778888899999999999875321 121223345668999999999999999886322 22
Q ss_pred --HHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCC-CHHHHHHHHHHHhchh
Q psy8856 207 --QKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL-DWYTTGRLSSLMGSTE 283 (312)
Q Consensus 207 --~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~-~~~~a~~~a~a~aa~~ 283 (312)
+.+.++++.+|||+|.+|++++++ ++.+++|+++++ ++||+||||+|.|||++++.+|+ ++++++++|+++|+.+
T Consensus 308 a~~~L~~~~~~VVVT~G~~Ga~~~~~-~~~~~~pa~~v~-vVDTtGAGDAF~Agfl~~l~~G~~~l~~al~~A~a~Aa~~ 385 (426)
T PLN02813 308 ATRYLSHFCPLVSVTDGARGSYIGVK-GEAVYIPPSPCV-PVDTCGAGDAYAAGILYGLLRGVSDLRGMGELAARVAATV 385 (426)
T ss_pred HHHHHHcCCCEEEEEeCCCCeEEEEC-CEEEEeCCCCCC-cccCCChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 234558999999999999999888 888999999986 99999999999999999999999 9999999999999999
Q ss_pred eeeccCCCCCCChHHHHHHHHHhhc
Q psy8856 284 ISHQGGQKHCPSLSEIDQRFKEAFG 308 (312)
Q Consensus 284 ~~~~g~~~~~~~~~ev~~~~~~~~~ 308 (312)
|++.|+..+.|+++|+.+.++.++.
T Consensus 386 v~~~Ga~~~~~~~~e~~~~~~~~~~ 410 (426)
T PLN02813 386 VGQQGTRLRVEDAVELAESFALHLD 410 (426)
T ss_pred HcccCCCcCHHHHHHHHHHHHHHhc
Confidence 9999999888899999999988764
No 5
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=7.4e-43 Score=306.98 Aligned_cols=277 Identities=19% Similarity=0.308 Sum_probs=232.9
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|+.++|.+..++ ++|. + +...+.......+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~il~iG~~~~D~~~~~~-~~~~---~------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (292)
T cd01174 1 KVVVVGSINVDLVTRVD-RLPK---P------GETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLE 70 (292)
T ss_pred CEEEEeeceeEEEEEec-CCCC---C------CCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHH
Confidence 69999999999999888 6543 2 2234456667899999999999999999999999999998 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC----CcCCceEEEECCCC-hHHHHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI----NNADIKIAIISPDN-CCNMIKHIKK 154 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~ 154 (312)
.|+++||+++++...++.+|+.+++.+++++++.+..+.+....++.+.+. .++.+++++++... .+....+++.
T Consensus 71 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (292)
T cd01174 71 NLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADVLLLQLEIPLETVLAALRA 150 (292)
T ss_pred HHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCEEEEeCCCCHHHHHHHHHH
Confidence 999999999998777778999999999888888887777665545444332 25788899888655 4677788999
Q ss_pred HHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHH-------HHh-hcCCEEEEeeCCCceE
Q psy8856 155 ILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQ-------KIN-EQVKVLIVTRGELGSD 226 (312)
Q Consensus 155 ~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~-------~l~-~g~~~vvvt~G~~G~~ 226 (312)
+++.+.++++|++..... .+.+++++|++++|++|++.+++....+.+ .+. .+++.+++|+|++|++
T Consensus 151 a~~~g~~v~~D~~~~~~~-----~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 225 (292)
T cd01174 151 ARRAGVTVILNPAPARPL-----PAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGAL 225 (292)
T ss_pred HHhcCCEEEEeCCCcCcC-----cHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCceE
Confidence 999999999999864332 267899999999999999999987554322 222 3899999999999999
Q ss_pred EEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCC
Q psy8856 227 IFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPS 295 (312)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~ 295 (312)
++++ ++.+++|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+.++++.|+..++|+
T Consensus 226 ~~~~-~~~~~~~~~~~~-~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 226 LASG-GEVEHVPAFKVK-AVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred EEeC-CceEEecCCCcc-cCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence 9998 888899999876 999999999999999999999999999999999999999999999876653
No 6
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.2e-43 Score=304.74 Aligned_cols=274 Identities=32% Similarity=0.570 Sum_probs=228.1
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
+|+++|++++|++..++ ++|. + +...+.......+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~v~~iG~~~~D~~~~v~-~~p~---~------~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~ 70 (279)
T cd01942 1 DVAVVGHLNYDIILKVE-SFPG---P------FESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLE 70 (279)
T ss_pred CEEEEecceeeeEeecc-cCCC---C------CceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHH
Confidence 58999999999999988 7764 2 2234456678899999999999999999999999999999 678999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccc-cCCcCCceEEEECCCChHHHHHHHHHHHhc
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDN-CINNADIKIAIISPDNCCNMIKHIKKILKL 158 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (312)
.|++.||+++++...++.+|+.+++..+.++++.....++....+..++ ...++.+++++++... ...++++.+++.
T Consensus 71 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 148 (279)
T cd01942 71 ELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPNDEADPDGLADIVHLSSGP--GLIELARELAAG 148 (279)
T ss_pred HHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCCchhhhcccCEEEeCCch--HHHHHHHHHHHc
Confidence 9999999999997767778999999888888887776666655454433 2335788999998764 466777777888
Q ss_pred CCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHHhhcCCEEEEeeCCCceEEEecCCceEEcC
Q psy8856 159 KIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIP 238 (312)
Q Consensus 159 ~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~ 238 (312)
+.++++|++++...|..+.+.++++++|++++|++|++.+....+........+.+.+++|+|++|++++++ ++.+++|
T Consensus 149 g~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~~~ 227 (279)
T cd01942 149 GITVSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKERTGLSEAELASGVRVVVVTLGPKGAIVFED-GEEVEVP 227 (279)
T ss_pred CCeEEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCCChHHHhcCCCEEEEEECCCceEEEEC-CceEEcc
Confidence 999999999876666667788999999999999999954322222222223478999999999999999998 8889999
Q ss_pred Cc-ccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccC
Q psy8856 239 CV-KADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGG 289 (312)
Q Consensus 239 ~~-~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~ 289 (312)
++ +++ ++||+||||+|+|||++++.+|+++++|+++|+++|++++++.|+
T Consensus 228 ~~~~~~-vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 228 AVPAVK-VVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred CcCcCC-CcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcccCC
Confidence 87 775 999999999999999999999999999999999999999999986
No 7
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.4e-42 Score=321.54 Aligned_cols=300 Identities=18% Similarity=0.235 Sum_probs=234.6
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccc--cceeee---ecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLD--KINVSF---YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-- 73 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-- 73 (312)
|+|+++|++++|.++.++ ++|. +++.. .....+ .........|| +.|+|.+|++||.++.++|.+|+|
T Consensus 73 ~~vl~lG~~~vD~i~~V~-~lP~---~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~ 147 (470)
T PLN02341 73 IDVATLGNLCVDIVLPVP-ELPP---PSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIY 147 (470)
T ss_pred ccEEEECCcceeEEEecC-CCCC---CCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHH
Confidence 589999999999999999 8875 33210 000000 00123445677 789999999999999999999999
Q ss_pred hHHHHHHHHHcCCccceeeecC--------CcccceEEEEEecCCCeeEEEeCCcccc--------CCccccCCcCCceE
Q psy8856 74 GSSYLKHLKYLGISNKYIQKIN--------SMFTAQCFIVTDVNNNQITIFHPGAMQL--------SYDDNCINNADIKI 137 (312)
Q Consensus 74 ~~~i~~~l~~~gi~~~~~~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 137 (312)
|+.+++.|++.||++.++...+ ..+|+.+++++++++++.+......... +..+....++.+++
T Consensus 148 G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adi 227 (470)
T PLN02341 148 GKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKA 227 (470)
T ss_pred HHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCE
Confidence 7889999999999999887654 3468899999998887654432211111 11111122567889
Q ss_pred EEECCC-----ChHHHHHHHHHHHhcCCcEEEcCCCCccc-C-----CHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC-
Q psy8856 138 AIISPD-----NCCNMIKHIKKILKLKIPFIFDPGQSLSM-F-----TKEELIKIIKKSSYIIVNEYESKLLVSKTSLS- 205 (312)
Q Consensus 138 ~~~~~~-----~~~~~~~~~~~~~~~~~~v~~D~~~~~~~-~-----~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~- 205 (312)
+++++. ..+.+.++++.+++.+.++++|++++... | ..+.++++++++|++++|++|++.+++..+..
T Consensus 228 v~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~~~ 307 (470)
T PLN02341 228 LFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPIL 307 (470)
T ss_pred EEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCHHH
Confidence 988864 34677888899999999999999875322 2 12457889999999999999999998864321
Q ss_pred -HHHHhh-c--CCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhc
Q psy8856 206 -LQKINE-Q--VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGS 281 (312)
Q Consensus 206 -~~~l~~-g--~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa 281 (312)
.+.+.+ + .+.||||+|++|++++++ ++.+++|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+
T Consensus 308 a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~-~~~~~vpa~~v~-vVDTtGAGDaF~Agfl~gll~G~~l~eal~~A~a~aA 385 (470)
T PLN02341 308 AGQELLRPGIRTKWVVVKMGSKGSILVTR-SSVSCAPAFKVN-VVDTVGCGDSFAAAIALGYIHNLPLVNTLTLANAVGA 385 (470)
T ss_pred HHHHHHhcCCCCCEEEEeeCCCCeEEEEC-CeeEEeCCCCcC-CCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 123332 4 589999999999999998 888999999986 9999999999999999999999999999999999999
Q ss_pred hheeeccCCCCCCChHHHHHHHHHhh
Q psy8856 282 TEISHQGGQKHCPSLSEIDQRFKEAF 307 (312)
Q Consensus 282 ~~~~~~g~~~~~~~~~ev~~~~~~~~ 307 (312)
+++++.|+..+.|+++++++++++..
T Consensus 386 ~~v~~~Ga~~~~p~~~ev~~~l~~~~ 411 (470)
T PLN02341 386 ATAMGCGAGRNVATLEKVLELLRASN 411 (470)
T ss_pred HHHcCcCCCCCCCCHHHHHHHHHhcC
Confidence 99999999888999999999988654
No 8
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.1e-42 Score=319.60 Aligned_cols=305 Identities=15% Similarity=0.165 Sum_probs=231.3
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccce-eeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKIN-VSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
+|+++|++.+|++....+.. ....|+-..++. .......+...+||++.|+|.++++||.++.|+|.+|+| |+.++
T Consensus 127 ~v~~~Ge~liDf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~ 205 (496)
T PLN02543 127 LVCCFGAVQKEFVPTVRVHD-NQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELV 205 (496)
T ss_pred eEEEeChhhhhhcCCCcccc-cccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 38999999999986532111 000011111110 001124457889999999999999999999999999999 78899
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEe--cCCCeeEEE-eCCccccCCccccCC--cCCceEEEECCCC------hHH
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTD--VNNNQITIF-HPGAMQLSYDDNCIN--NADIKIAIISPDN------CCN 147 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~ 147 (312)
+.|++.||+++++.+.++.+|+.+++.++ .++++++.. ..++...+..+++.. +..+++++++... .+.
T Consensus 206 ~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh~~~~~l~~~~~~~a 285 (496)
T PLN02543 206 LMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNLAVLKEARMFHFNSEVLTSPSMQST 285 (496)
T ss_pred HHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCHhHhCCCceEEECChhhcCchHHHH
Confidence 99999999999999888889999998874 445444322 334444455555443 5688899887543 467
Q ss_pred HHHHHHHHHhcCCcEEEcCCCCcccCC-----HHHHHHHhhcccEEEeCHHHHHHhhcCCC-------------------
Q psy8856 148 MIKHIKKILKLKIPFIFDPGQSLSMFT-----KEELIKIIKKSSYIIVNEYESKLLVSKTS------------------- 203 (312)
Q Consensus 148 ~~~~~~~~~~~~~~v~~D~~~~~~~~~-----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~------------------- 203 (312)
...+++.+++.|++|+||++++..+|. .+.+.++++++||+++|++|++.+++...
T Consensus 286 ~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~~~ 365 (496)
T PLN02543 286 LFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFEQT 365 (496)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhhhh
Confidence 788899999999999999999888884 23467789999999999999999988531
Q ss_pred --------CCHH---HH-hhcCCEEEEeeCCCceEEEecCCceEEcCCc-----ccCCcCCCCCchhhhHHHHHHHHHc-
Q psy8856 204 --------LSLQ---KI-NEQVKVLIVTRGELGSDIFLNNERKIKIPCV-----KADRIVDPTGCGDAFRSGVLFGIIN- 265 (312)
Q Consensus 204 --------~~~~---~l-~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-----~~~~~vdt~GaGDaf~ag~~~~l~~- 265 (312)
.+.+ .+ ..+++.|+||+|++|++++++ +....++.. +.. +||||||||+|.|||++++..
T Consensus 366 ~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~-~~~g~v~~~~~~~v~~~-~VDTTGAGDAF~AGfL~~Ll~~ 443 (496)
T PLN02543 366 KNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTP-KFDGVVVGTEDVLITPF-TCDRTGSGDAVVAAIMRKLTTC 443 (496)
T ss_pred hcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEEC-CCcccccccccccCCCC-CcCCCchHHHHHHHHHHHHHhc
Confidence 0112 22 237999999999999999986 322222111 122 489999999999999999985
Q ss_pred ------CCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHHHhhcc
Q psy8856 266 ------NLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEAFGY 309 (312)
Q Consensus 266 ------g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~~~~~~ 309 (312)
+.+++++++||+++||++|++.|+..++|+++|+++++++.+-.
T Consensus 444 ~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~~~~ 493 (496)
T PLN02543 444 PEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYVP 493 (496)
T ss_pred cccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhhccc
Confidence 67999999999999999999999999999999999999986544
No 9
>PLN02967 kinase
Probab=100.00 E-value=1.4e-42 Score=321.53 Aligned_cols=298 Identities=17% Similarity=0.156 Sum_probs=232.5
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccce--eeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKIN--VSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSY 77 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i 77 (312)
.|+|+|++.+|++... +.-..+...+++... .......+...+||++.|+|.+|++||.++.|+|.+|+| |+.+
T Consensus 198 ~V~~iGe~l~D~~p~g--~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~l 275 (581)
T PLN02967 198 LVCCFGAAQHAFVPSG--RPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAM 275 (581)
T ss_pred eEEEECchhheecccC--ccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 4899999999997532 111000111111100 011234457789999999999999999999999999999 7889
Q ss_pred HHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEE-EeCCccccCCccccCC--cCCceEEEECCC------ChHHH
Q psy8856 78 LKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITI-FHPGAMQLSYDDNCIN--NADIKIAIISPD------NCCNM 148 (312)
Q Consensus 78 ~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~ 148 (312)
++.|+++||+++++.+.++.+|+.+++.++++|++.+. ..++++..+..+++.. +..++++|++.. ..+.+
T Consensus 276 l~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~al 355 (581)
T PLN02967 276 LYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTT 355 (581)
T ss_pred HHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHH
Confidence 99999999999999888888999999999988876554 3566655565555443 567888887763 23678
Q ss_pred HHHHHHHHhcCCcEEEcCCCCcccCC-----HHHHHHHhhcccEEEeCHHHHHHhhcCCCC----------------C--
Q psy8856 149 IKHIKKILKLKIPFIFDPGQSLSMFT-----KEELIKIIKKSSYIIVNEYESKLLVSKTSL----------------S-- 205 (312)
Q Consensus 149 ~~~~~~~~~~~~~v~~D~~~~~~~~~-----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~----------------~-- 205 (312)
..+++.+++.|++|+||++++..+|. .+.+.++++++||+++|++|++.+++.... .
T Consensus 356 l~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e 435 (581)
T PLN02967 356 LRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPE 435 (581)
T ss_pred HHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHH
Confidence 88899999999999999999888884 234778999999999999999999985321 0
Q ss_pred -HHHH-hhcCCEEEEeeCCCceEEEecCCc---eEEcCCcccCC-cCCCCCchhhhHHHHHHHHHcC-------CCHHHH
Q psy8856 206 -LQKI-NEQVKVLIVTRGELGSDIFLNNER---KIKIPCVKADR-IVDPTGCGDAFRSGVLFGIINN-------LDWYTT 272 (312)
Q Consensus 206 -~~~l-~~g~~~vvvt~G~~G~~~~~~~~~---~~~~~~~~~~~-~vdt~GaGDaf~ag~~~~l~~g-------~~~~~a 272 (312)
...+ ..+++.|+||+|++|++++++ ++ ...+|+++++. +||||||||+|.|||++++.+| .+++++
T Consensus 436 ~a~~l~~~g~k~VVVTlG~~Ga~~~~~-~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~Leea 514 (581)
T PLN02967 436 VVAPLWHENLKVLFVTNGTSKIHYYTK-EHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKT 514 (581)
T ss_pred HHHHHHhCCCCEEEEEECccceEEEEC-CCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHHH
Confidence 1122 237899999999999999987 44 34456666641 4899999999999999999974 679999
Q ss_pred HHHHHHHhchheeeccCCCCCCChHHHHHH
Q psy8856 273 GRLSSLMGSTEISHQGGQKHCPSLSEIDQR 302 (312)
Q Consensus 273 ~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~ 302 (312)
++||+++||+++++.|+..++|+.++++.-
T Consensus 515 LrfAnAaAAL~vt~~GA~~glPt~~eV~~~ 544 (581)
T PLN02967 515 IKYAIDCGVIDQWLLARTRGFPPKEDMEDE 544 (581)
T ss_pred HHHHHHHHHHHhccCCCccCCCCHHHHhhh
Confidence 999999999999999999999999999653
No 10
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.5e-42 Score=303.15 Aligned_cols=273 Identities=17% Similarity=0.199 Sum_probs=223.9
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|++++|++..++ ++|. ++ ...+.....+.+|| +.|+|.+|++||.++.++|.+|+| |+.+++
T Consensus 1 ~i~~iG~~~~D~i~~~~-~~~~---~~------~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~ 69 (289)
T cd01944 1 KVLVIGAAVVDIVLDVD-KLPA---SG------GDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQ 69 (289)
T ss_pred CeEEEcceeEEEEeecc-cCCC---CC------CccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHH
Confidence 69999999999999998 7754 22 23344556788999 999999999999999999999998 889999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEECCCC-------hHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPDN-------CCNMIK 150 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~ 150 (312)
.|++.||+++++... +.+|+.+++.+++++++.+..+.+....++.+.+.. +++++++++++.. .+.+.+
T Consensus 70 ~l~~~gi~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (289)
T cd01944 70 AMRDEGIEILLPPRG-GDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILLE 148 (289)
T ss_pred HHHHcCCcccccccc-CCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHHH
Confidence 999999999988764 567887778888888888877776655555554443 5688888876532 344455
Q ss_pred HHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH----HHHh-hcCCEEEEeeCCCce
Q psy8856 151 HIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL----QKIN-EQVKVLIVTRGELGS 225 (312)
Q Consensus 151 ~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~----~~l~-~g~~~vvvt~G~~G~ 225 (312)
+++.++ .+.++++|++++...+..+.++++++++|++++|++|++.+++....+. +.+. .+.+.++||+|++|+
T Consensus 149 ~~~~~~-~~~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~vvvt~G~~Ga 227 (289)
T cd01944 149 WLEALP-AGTTLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERGDPAAEASALRIYAKTAAPVVVRLGSNGA 227 (289)
T ss_pred HHHhcc-CCCEEEEcCcccccccCHHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHHHHHHHhccCCeEEEEECCCcE
Confidence 555533 5789999999887777777889999999999999999999998654332 2233 378899999999999
Q ss_pred EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeecc
Q psy8856 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g 288 (312)
++++++++.+++|+++++ ++||+||||+|+|||++++.+|+++++|+++|+++|+++|++.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~-vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 228 WIRLPDGNTHIIPGFKVK-AVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred EEEecCCCeEEecCCCCC-CccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCC
Confidence 999853667889989886 99999999999999999999999999999999999999999876
No 11
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-42 Score=303.45 Aligned_cols=295 Identities=20% Similarity=0.314 Sum_probs=244.4
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
+|+++|+.++|.+....+++|. +.. ..........+||++.|+|+++++||.++.++|.+|+| ++.+++
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~---~~~------~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~ 71 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPE---PGE------TVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLE 71 (311)
T ss_pred CEEEECchhhheehhhccCCCC---Ccc------cccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHH
Confidence 5899999999999875546654 211 22222346788999999999999999999999999998 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCc-cccCCccccC--CcCCceEEEECCCCh----HHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGA-MQLSYDDNCI--NNADIKIAIISPDNC----CNMIKHI 152 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~ 152 (312)
.+++.||+++++....+.+|+.+++.+++++++.+.++++. ...+.++.+. .+..+++++++.... +....++
T Consensus 72 ~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 151 (311)
T COG0524 72 ELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVLHISGIQLEIPPEALLAAL 151 (311)
T ss_pred HHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCeeeEEEeecCCChHHHHHHH
Confidence 99999999999988777789999999999899999888774 4445665555 245667776654332 7888999
Q ss_pred HHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcC-CCCCHH---HHhhcCCEEEEeeCCCceEEE
Q psy8856 153 KKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSK-TSLSLQ---KINEQVKVLIVTRGELGSDIF 228 (312)
Q Consensus 153 ~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~-~~~~~~---~l~~g~~~vvvt~G~~G~~~~ 228 (312)
+.+++.+.++++|++++...|..+.++++++++|++++|++|++.+++. ...... ....+++.+++|+|++|++++
T Consensus 152 ~~a~~~g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~ 231 (311)
T COG0524 152 ELAKAAGVTVSFDLNPRPALWDRELLEELLALADILFPNEEEAELLTGLEEDAEAAAALLLAKGVKTVVVTLGAEGAVVF 231 (311)
T ss_pred HHHHHcCCeEEEecCCCccccchhhHHHHHhhCCEEeCCHHHHHHHhCCCccHHHHHHHHhhcCCCEEEEEeCCCcEEEE
Confidence 9999999999999999888877788899999999999999999999885 221111 123489999999999999999
Q ss_pred ecCCc--eEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHHHh
Q psy8856 229 LNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEA 306 (312)
Q Consensus 229 ~~~~~--~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~~~ 306 (312)
+++++ ....++++++ ++|||||||+|.|||++++.+|+++++++++|+++|++++++.|+....|+.++++.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~-vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~~~~~~~~ 310 (311)
T COG0524 232 TGGGEVTVPVPAAFKVK-VVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAALAVTRPGARPSLPTREEVEAFLEEL 310 (311)
T ss_pred eCCCceeeccCCCCccc-cccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCCCCCCHHHHHHHHhcc
Confidence 98332 3334466675 99999999999999999999999999999999999999999999998899999999988764
No 12
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=7.2e-42 Score=299.56 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=224.4
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|++++|++..++ ++|. + +...+.......+||.+.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~i~~iG~~~iD~~~~~~-~~p~---~------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (284)
T cd01945 1 RVLGVGLAVLDLIYLVA-SFPG---G------DGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILA 70 (284)
T ss_pred CEEEECcceeEEEEEec-cCCC---C------CCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHH
Confidence 69999999999999998 7754 2 2233445667889999999999999999999999999999 778999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEECCCChHHHHHHHHHHHh
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPDNCCNMIKHIKKILK 157 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (312)
.|++.||+++++...++.+|+.+++ ...++++....+.+....+..+++.. +++++++++++..++...++++.+++
T Consensus 71 ~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~ 149 (284)
T cd01945 71 ELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVLVDGRQPEAALHLAQEARA 149 (284)
T ss_pred HHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEEEcCCCHHHHHHHHHHHHH
Confidence 9999999999998877778888776 33344433444434433344444433 57899999999888888899999999
Q ss_pred cCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC-HHHHh-hcCCEEEEeeCCCceEEEe-cCCce
Q psy8856 158 LKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS-LQKIN-EQVKVLIVTRGELGSDIFL-NNERK 234 (312)
Q Consensus 158 ~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~-~~~l~-~g~~~vvvt~G~~G~~~~~-~~~~~ 234 (312)
++.++++|+.+... .+ ++++++++|++++|++|++.+++..... .+.+. .+++.++||+|++|+++++ + ++.
T Consensus 150 ~g~~v~~~~~~~~~---~~-~~~~~~~~dil~~n~~e~~~l~~~~~~~~~~~l~~~~~~~vivt~G~~G~~~~~~~-~~~ 224 (284)
T cd01945 150 RGIPIPLDLDGGGL---RV-LEELLPLADHAICSENFLRPNTGSADDEALELLASLGIPFVAVTLGEAGCLWLERD-GEL 224 (284)
T ss_pred cCCCeeEeccCCcc---cc-hHHHhccCCEEEeChhHHhhhcCCCHHHHHHHHHhcCCcEEEEEECCCCeEEEcCC-CCE
Confidence 99987777754322 12 6789999999999999999988764321 12222 3899999999999999998 5 788
Q ss_pred EEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCC
Q psy8856 235 IKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPS 295 (312)
Q Consensus 235 ~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~ 295 (312)
+++|+++++ ++||+||||+|+|||++++++|+++++|+++|+++|+++|++.|+..++|+
T Consensus 225 ~~~~~~~~~-vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 225 FHVPAFPVE-VVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred EecCCCccc-cccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 899999886 999999999999999999999999999999999999999999998876553
No 13
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=2e-42 Score=306.99 Aligned_cols=282 Identities=19% Similarity=0.241 Sum_probs=226.9
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecC-----------CcccccCCchHHHHHHHHHhCCCceEEEEe
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSP-----------TMKKEYGGCAGNIAYNLKLLNGNPLIVSIL 70 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~GG~~~n~a~~l~~lG~~~~~~~~v 70 (312)
+|+++|++++|++..++ ++|. +......+.+.... .....+||++.|+|.+|++||.++.++|.+
T Consensus 3 ~v~~vG~~~~D~~~~v~-~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~v 78 (312)
T cd01168 3 DVLGLGNALVDILAQVD-DAFL---EKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRV 78 (312)
T ss_pred eEEEECCCeEEEEEecC-HHHH---HHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEe
Confidence 69999999999999998 7752 10000011122221 357889999999999999999999999999
Q ss_pred ecC--hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEECCC---
Q psy8856 71 GKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPD--- 143 (312)
Q Consensus 71 G~d--~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--- 143 (312)
|+| ++.+++.|+++||+++++... +.+|+.+++.+++++++.+..+.+....++.+++.. ++.++++++++.
T Consensus 79 G~D~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~ 157 (312)
T cd01168 79 GDDKLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYLYLEGYLLT 157 (312)
T ss_pred ccChhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEEEEEEEecC
Confidence 999 788999999999999988754 568999999999888888777776665566555543 568889988763
Q ss_pred -ChHHHHHHHHHHHhcCCcEEEcCCCCcc-cCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC----HHHHh-hcCCEE
Q psy8856 144 -NCCNMIKHIKKILKLKIPFIFDPGQSLS-MFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS----LQKIN-EQVKVL 216 (312)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~----~~~l~-~g~~~v 216 (312)
..+....+++.+++.+.++++|++.... ....+.++++++++|++++|++|++.+++....+ .+.+. .+++.+
T Consensus 158 ~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~a~~l~~~g~~~v 237 (312)
T cd01168 158 VPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEAETTDDLEAALKLLALRCRIV 237 (312)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCCCChHHHHHHHHhcCCCEE
Confidence 2377788888888899999999975211 1113447789999999999999999998842111 12233 388999
Q ss_pred EEeeCCCceEEEecCCceEEcCCcc-cCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCC
Q psy8856 217 IVTRGELGSDIFLNNERKIKIPCVK-ADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ 290 (312)
Q Consensus 217 vvt~G~~G~~~~~~~~~~~~~~~~~-~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~ 290 (312)
|||+|++|++++++ ++.+++|+++ ++ ++||+||||+|+|||++++++|+++++|+++|+++|+++|++.|+.
T Consensus 238 vvt~G~~G~~~~~~-~~~~~~~~~~~~~-vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~Aa~~v~~~G~~ 310 (312)
T cd01168 238 VITQGAKGAVVVEG-GEVYPVPAIPVEK-IVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAAAEVIQQLGPR 310 (312)
T ss_pred EEecCCCCeEEEEC-CEEEeCCCCCCCC-cccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999998 8889999998 65 9999999999999999999999999999999999999999999986
No 14
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=7.7e-42 Score=303.16 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=227.4
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
+|+++|+.++|.+...+ ..+. ++. .........+||++.|+|.+|++||.++.++|.+|+| |..+++
T Consensus 6 ~i~~iG~~~vD~~~~~~-~~~~---~~~-------~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~ 74 (313)
T PRK09850 6 YVVIIGSANIDVAGYSH-ESLN---YAD-------SNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLT 74 (313)
T ss_pred cEEEECcEEEeeeccCC-CcCc---CCC-------CCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Confidence 69999999999998765 3221 111 1112346779999999999999999999999999998 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeC-CccccCCccccC----CcCCceEEEECCCCh-HHHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP-GAMQLSYDDNCI----NNADIKIAIISPDNC-CNMIKHIK 153 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~ 153 (312)
.|++.||+++++...++.+|+++++++++++++.+.+.. +....+....+. .++++++++++.... +....+++
T Consensus 75 ~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 154 (313)
T PRK09850 75 QTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILD 154 (313)
T ss_pred HHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHH
Confidence 999999999998777888899999999988888776542 333333333222 256788888876544 44444444
Q ss_pred HHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH---H----HHh-hcCCEEEEeeCCCce
Q psy8856 154 KILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL---Q----KIN-EQVKVLIVTRGELGS 225 (312)
Q Consensus 154 ~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~---~----~l~-~g~~~vvvt~G~~G~ 225 (312)
.+ .+.++++|++.. |....+.++++++|++++|++|++.+++....+. + .+. .+++.++||+|++|+
T Consensus 155 ~~--~g~~v~~D~~~~---~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~ 229 (313)
T PRK09850 155 NA--ANVPVFVDPVSA---WKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGV 229 (313)
T ss_pred hc--cCCCEEEEcCCH---HHHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCceE
Confidence 32 588999999853 3234567889999999999999999988543221 1 222 278999999999999
Q ss_pred EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHHH
Q psy8856 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~~ 305 (312)
++++++++..++|+++++ ++||+||||+|+|||++++.+|+++.+|+++|+++|++++.+.+.....|+.++++.++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~-vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~ 308 (313)
T PRK09850 230 YYSDISGESGWSAPIKTN-VINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVEN 308 (313)
T ss_pred EEEcCCCCeEecCCCCcc-cccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 999853566778888876 9999999999999999999999999999999999999999999999999999999998874
Q ss_pred h
Q psy8856 306 A 306 (312)
Q Consensus 306 ~ 306 (312)
.
T Consensus 309 ~ 309 (313)
T PRK09850 309 A 309 (313)
T ss_pred h
Confidence 3
No 15
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.5e-41 Score=300.40 Aligned_cols=275 Identities=19% Similarity=0.240 Sum_probs=224.3
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|+.++|.+.... ......+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 4 ~il~iG~~~iD~~~~~~---------------------~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~ 62 (304)
T PRK09434 4 KVWVLGDAVVDLIPEGE---------------------NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQ 62 (304)
T ss_pred cEEEecchheeeecCCC---------------------CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHH
Confidence 79999999999983211 1225678999999999999999999999999999 678999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeC--CccccCCccccCCcCCceEEEECCCC------hHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP--GAMQLSYDDNCINNADIKIAIISPDN------CCNMIKH 151 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 151 (312)
.|+++||+++++...++.+|+.+++.+++++++.+.+.. +....+...++..+.+++++++++.. ++...++
T Consensus 63 ~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (304)
T PRK09434 63 TLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLPPFRQGEWLHLCSIALSAEPSRSTTFEA 142 (304)
T ss_pred HHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhhhhcCCCEEEEccccccCchHHHHHHHH
Confidence 999999999998888888999999998887777654332 22223444455445678888876432 3456778
Q ss_pred HHHHHhcCCcEEEcCCCCcccCC-----HHHHHHHhhcccEEEeCHHHHHHhhcCCCCC--HHHHhh--cCCEEEEeeCC
Q psy8856 152 IKKILKLKIPFIFDPGQSLSMFT-----KEELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKINE--QVKVLIVTRGE 222 (312)
Q Consensus 152 ~~~~~~~~~~v~~D~~~~~~~~~-----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~--~~~l~~--g~~~vvvt~G~ 222 (312)
++.+++.+.++++|++.+...|. .+.++++++++|++++|++|+..+++..... .+.+.+ +.+.++||+|+
T Consensus 143 ~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~~~~~~~l~~~~g~~~vvvt~G~ 222 (304)
T PRK09434 143 MRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQLEDAIYALADRYPIALLLVTLGA 222 (304)
T ss_pred HHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCHHHHHHHHHhhcCCcEEEEEecC
Confidence 88899999999999997655552 2345678899999999999999998864321 234443 68899999999
Q ss_pred CceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCC------CHHHHHHHHHHHhchheeeccCCCCCCCh
Q psy8856 223 LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL------DWYTTGRLSSLMGSTEISHQGGQKHCPSL 296 (312)
Q Consensus 223 ~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~------~~~~a~~~a~a~aa~~~~~~g~~~~~~~~ 296 (312)
+|++++++ ++.+++|+++++ ++||+||||+|+|||++++++|+ ++++|+++|+++|++++++.|+..+.|+.
T Consensus 223 ~G~~~~~~-~~~~~~~~~~~~-~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~ 300 (304)
T PRK09434 223 EGVLVHTR-GQVQHFPAPSVD-PVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAEIIAQAQACGALATTAKGAMTALPNR 300 (304)
T ss_pred CceEEEeC-CceeEeCCCCCC-CCcCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHcccCCcCCCCCh
Confidence 99999988 888999999886 99999999999999999999997 99999999999999999999988777887
Q ss_pred HHH
Q psy8856 297 SEI 299 (312)
Q Consensus 297 ~ev 299 (312)
+++
T Consensus 301 ~~~ 303 (304)
T PRK09434 301 QEL 303 (304)
T ss_pred HHc
Confidence 765
No 16
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.3e-41 Score=305.98 Aligned_cols=303 Identities=17% Similarity=0.220 Sum_probs=232.9
Q ss_pred CcEeeec-ceeeeeEEecCCcccC----------CCCccccccceeeee---------cCCcccccCCchHHHHHHHHH-
Q psy8856 1 MNSLICG-SLAFDNIMRFEGKFSN----------SLLPDQLDKINVSFY---------SPTMKKEYGGCAGNIAYNLKL- 59 (312)
Q Consensus 1 m~i~~~G-~~~~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~---------~~~~~~~~GG~~~n~a~~l~~- 59 (312)
++|+++| |+.+|+...+++.|-. .+..++...+..... .......+||++.|++.+|++
T Consensus 20 ~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~~ 99 (367)
T PLN02379 20 PLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLSAG 99 (367)
T ss_pred CcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHHHh
Confidence 5799999 9999999998766611 111122222211111 112456789999999999986
Q ss_pred hCCCceEEEEeecC--hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCc
Q psy8856 60 LNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADI 135 (312)
Q Consensus 60 lG~~~~~~~~vG~d--~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 135 (312)
||.++.++|.+|+| |+.+++.|++.||+++++...+ .+|++++++++++++|.+..+.+....++.+++.. ++++
T Consensus 100 LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~-~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~~~~~~~ 178 (367)
T PLN02379 100 FGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKK-GPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTKEDFKGS 178 (367)
T ss_pred cCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCC-CCCceEEEEECCCCCccccCCccccccCChhHCCHHHHhcC
Confidence 99999999999999 7889999999999988875543 48999999999888887765555444444444432 5788
Q ss_pred eEEEECCC--ChHHHHHHHHHHHhcCCcEEEcCCCCccc-CCHHHHHHHhh--cccEEEeCHHHHHHhhcCCC-CCH---
Q psy8856 136 KIAIISPD--NCCNMIKHIKKILKLKIPFIFDPGQSLSM-FTKEELIKIIK--KSSYIIVNEYESKLLVSKTS-LSL--- 206 (312)
Q Consensus 136 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~D~~~~~~~-~~~~~l~~ll~--~~dvl~~n~~E~~~l~~~~~-~~~--- 206 (312)
++++++-. .++.+.++++.++++++++++|++..... ...+.++++++ ++|++++|++|++.+++... .+.
T Consensus 179 ~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~~~ 258 (367)
T PLN02379 179 KWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPEAA 258 (367)
T ss_pred CEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHHHH
Confidence 99988821 35778888999999999999999863221 22455777775 89999999999999986432 122
Q ss_pred -HHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhee
Q psy8856 207 -QKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEIS 285 (312)
Q Consensus 207 -~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~ 285 (312)
+.+.++++.++||+|++|++++.+ ++.+++|++++.+++||+||||+|.|||+|++.+|+++++|+++|+++|+.+|+
T Consensus 259 ~~~l~~~~~~vvvT~G~~Ga~~~~~-~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a~~~g~~aAa~vi~ 337 (367)
T PLN02379 259 LEFLAKYCNWAVVTLGSKGCIARHG-KEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVGACSGGSVVR 337 (367)
T ss_pred HHHHHhcCCEEEEEECCCCeEEEEC-CEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHh
Confidence 234458999999999999999998 888999998754599999999999999999999999999999999999999999
Q ss_pred eccCCCCCCChHHHHHHHHH
Q psy8856 286 HQGGQKHCPSLSEIDQRFKE 305 (312)
Q Consensus 286 ~~g~~~~~~~~~ev~~~~~~ 305 (312)
+.|+......++++.++++.
T Consensus 338 ~~G~~~~~~~~~~~~~~~~~ 357 (367)
T PLN02379 338 ALGGEVTPENWQWMYKQMQL 357 (367)
T ss_pred ccCCCCChHHHHHHHHHHHH
Confidence 99987544444555555543
No 17
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=2.2e-41 Score=304.06 Aligned_cols=285 Identities=17% Similarity=0.152 Sum_probs=224.5
Q ss_pred CcEeeecceeeeeEEecCCc-----ccCCCCcccc--------ccceeeeecCCcccccCCchHHHHHHHHHhC---C-C
Q psy8856 1 MNSLICGSLAFDNIMRFEGK-----FSNSLLPDQL--------DKINVSFYSPTMKKEYGGCAGNIAYNLKLLN---G-N 63 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG---~-~ 63 (312)
|+|+++|++++|++..++.. .|. +++. +.++.+.........+||++.|+|+++++|| . +
T Consensus 6 ~~i~~iG~~~~D~~~~v~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 6 KKLLGFGNPLLDISAHVSDEFLEKYGLE---LGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred ceEEEECCceEEEEEeeCHHHHHHcCCC---CCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 68999999999999998831 132 2211 1112222333457889999999999999885 5 9
Q ss_pred ceEEEEeecC--hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC------cCCc
Q psy8856 64 PLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN------NADI 135 (312)
Q Consensus 64 ~~~~~~vG~d--~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 135 (312)
+.++|.+|+| |+.+++.|++.||+++++. .++.+|+.+++.++. +++.+..+.+.+..++.+++.. ++.+
T Consensus 83 v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~ 160 (345)
T PTZ00247 83 VCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVANLGAANHLSAEHMQSHAVQEAIKTA 160 (345)
T ss_pred EEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccccCcchhhcCChHHcCcHHHHHHHhhC
Confidence 9999999999 7889999999999998775 566789999998875 5676666677766666665542 4678
Q ss_pred eEEEECCC----ChHHHHHHHHHHHhcCCcEEEcCCCCccc-CCHHHHHHHhhcccEEEeCHHHHHHhhcCCC---CCHH
Q psy8856 136 KIAIISPD----NCCNMIKHIKKILKLKIPFIFDPGQSLSM-FTKEELIKIIKKSSYIIVNEYESKLLVSKTS---LSLQ 207 (312)
Q Consensus 136 ~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~D~~~~~~~-~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~---~~~~ 207 (312)
++++++.. ..+....+++.+++.++++++|++..... ...+.+.++++++|++++|++|++.+++... .+.+
T Consensus 161 ~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~ 240 (345)
T PTZ00247 161 QLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLK 240 (345)
T ss_pred CEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHH
Confidence 89988863 35778888999999999999998642111 1124578899999999999999999998311 1222
Q ss_pred ----HHhh-------cCCEEEEeeCCCceEEEecCCceEEcCCcccC--CcCCCCCchhhhHHHHHHHHHcCCCHHHHHH
Q psy8856 208 ----KINE-------QVKVLIVTRGELGSDIFLNNERKIKIPCVKAD--RIVDPTGCGDAFRSGVLFGIINNLDWYTTGR 274 (312)
Q Consensus 208 ----~l~~-------g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~--~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~ 274 (312)
.+.+ +.+.++||+|++|++++++ ++.+++|+++++ +++||+||||+|.|||++++.+|+++++|++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~-~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~al~ 319 (345)
T PTZ00247 241 EIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATK-DGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCVE 319 (345)
T ss_pred HHHHHHHhccccccCCCCEEEEecCCCceEEEEC-CEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2321 3779999999999999998 888889988873 4899999999999999999999999999999
Q ss_pred HHHHHhchheeeccCCC
Q psy8856 275 LSSLMGSTEISHQGGQK 291 (312)
Q Consensus 275 ~a~a~aa~~~~~~g~~~ 291 (312)
+|+++|+++|++.|+..
T Consensus 320 ~a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 320 AGHYSAQVIIQHNGCTY 336 (345)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 99999999999999883
No 18
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=7.3e-41 Score=294.74 Aligned_cols=268 Identities=21% Similarity=0.299 Sum_probs=221.1
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|++++|.+...+ +. .......+||++.|+|.++++||.++.++|.+|+| ++.+++
T Consensus 1 ~ilviG~~~~D~~~~~~-~~-----------------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~ 62 (295)
T cd01167 1 KVVCFGEALIDFIPEGS-GA-----------------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLE 62 (295)
T ss_pred CEEEEcceeEEEecCCC-CC-----------------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHH
Confidence 79999999999997665 22 23447789999999999999999999999999999 778999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccC--Cc-cccCCcCCceEEEECCC------ChHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLS--YD-DNCINNADIKIAIISPD------NCCNMIK 150 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (312)
.|+++||++.++.+.++.+|+++++.+++++++.+..+.+..... .. .....++++++++++.. ..+...+
T Consensus 63 ~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 142 (295)
T cd01167 63 TLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADILHFGSIALASEPSRSALLE 142 (295)
T ss_pred HHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEEEEechhhccchHHHHHHH
Confidence 999999999988877778999999999878888877765543222 11 12233567888887642 2356778
Q ss_pred HHHHHHhcCCcEEEcCCCCcccCC-----HHHHHHHhhcccEEEeCHHHHHHhhcCCCCC--HHHH-hhcCCEEEEeeCC
Q psy8856 151 HIKKILKLKIPFIFDPGQSLSMFT-----KEELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKI-NEQVKVLIVTRGE 222 (312)
Q Consensus 151 ~~~~~~~~~~~v~~D~~~~~~~~~-----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~--~~~l-~~g~~~vvvt~G~ 222 (312)
+++.+++.+.++++|++.+...|. .+.++++++++|++++|++|++.+++....+ .+.+ ..+++.++||+|+
T Consensus 143 ~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~~l~~~g~~~vvvt~G~ 222 (295)
T cd01167 143 LLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEEIAALLLLFGLKLVLVTRGA 222 (295)
T ss_pred HHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHHHHHHHHhhcCCCEEEEecCC
Confidence 888889899999999987654453 2346789999999999999999998864322 1223 2389999999999
Q ss_pred CceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCC-------CHHHHHHHHHHHhchheeeccC
Q psy8856 223 LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL-------DWYTTGRLSSLMGSTEISHQGG 289 (312)
Q Consensus 223 ~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~-------~~~~a~~~a~a~aa~~~~~~g~ 289 (312)
+|++++++ ++.+++|+++++ ++||+||||+|+|||++++++|+ ++++|+++|+++|+.+|+++|+
T Consensus 223 ~G~~~~~~-~~~~~~~a~~~~-vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 223 DGALLYTK-GGVGEVPGIPVE-VVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred cceEEEEC-CcceeeCCCCcc-eeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhHHHhcccCC
Confidence 99999998 888999999876 99999999999999999999999 9999999999999999999986
No 19
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=2.1e-40 Score=291.70 Aligned_cols=271 Identities=18% Similarity=0.282 Sum_probs=221.8
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|+.++|++...++.. .........+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~~---------------~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~ 65 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGGRL---------------EQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILA 65 (294)
T ss_pred CeEEechhheeeecCCCCcc---------------chhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 69999999999986655211 1234457789999999999999999999999999998 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCC--ccccCCccccC--CcCCceEEEECCCCh-------HHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPG--AMQLSYDDNCI--NNADIKIAIISPDNC-------CNM 148 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~ 148 (312)
.|++.||+++++...++.+|+.+++.+++++++.+....+ +...++.+.+. .+++++++++++..+ +.+
T Consensus 66 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (294)
T cd01166 66 ELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREAL 145 (294)
T ss_pred HHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHH
Confidence 9999999999998878889999999988777776665532 22334444432 257889999987542 566
Q ss_pred HHHHHHHHhcCCcEEEcCCCCcccCC----HHHHHHHhhcccEEEeCHHHHHHhhcCCCC-CH-HHHh---hcCCEEEEe
Q psy8856 149 IKHIKKILKLKIPFIFDPGQSLSMFT----KEELIKIIKKSSYIIVNEYESKLLVSKTSL-SL-QKIN---EQVKVLIVT 219 (312)
Q Consensus 149 ~~~~~~~~~~~~~v~~D~~~~~~~~~----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~-~~-~~l~---~g~~~vvvt 219 (312)
.++++.+++.+.++++||+.+...|. .+.++.+++++|++++|+.|++.+++.... +. +.+. .+++.++||
T Consensus 146 ~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l~~g~~~viit 225 (294)
T cd01166 146 LEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALALALGVKAVVVK 225 (294)
T ss_pred HHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHHhhcCCccEEEEE
Confidence 77888888889999999987543332 234667899999999999999999886432 21 2222 478999999
Q ss_pred eCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccC
Q psy8856 220 RGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGG 289 (312)
Q Consensus 220 ~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~ 289 (312)
.|++|++++++ ++.+++|+++++ ++||+||||+|+|||++++.+|+++++|+++|+++|+.+|++.|+
T Consensus 226 ~G~~G~~~~~~-~~~~~~~~~~~~-~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 226 LGAEGALVYTG-GGRVFVPAYPVE-VVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred EcCCceEEEEC-CceEEeCCCCcc-cccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999988 888999999885 999999999999999999999999999999999999999999986
No 20
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=7.1e-41 Score=303.98 Aligned_cols=295 Identities=16% Similarity=0.207 Sum_probs=227.4
Q ss_pred cEeeecceeeeeEEecCCcccC----------CCCccccccceeeeecCC--cccccCCchHHHHHHHHHhC-CCceEEE
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSN----------SLLPDQLDKINVSFYSPT--MKKEYGGCAGNIAYNLKLLN-GNPLIVS 68 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~GG~~~n~a~~l~~lG-~~~~~~~ 68 (312)
+|+++||+.+|+...+++.|-. .+.+++...+...+.-.. ....+||++.|+|++|++|| .++.++|
T Consensus 35 ~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~~fig 114 (434)
T PRK15074 35 YIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRSVLLG 114 (434)
T ss_pred cEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999999999998766611 111112222221211111 24568999999999999996 9999999
Q ss_pred EeecC---hHHHHHHHH--HcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEEC
Q psy8856 69 ILGKD---GSSYLKHLK--YLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIIS 141 (312)
Q Consensus 69 ~vG~d---~~~i~~~l~--~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 141 (312)
.+|+| |+.+++.|+ +.||++.++...+ .+|+.++++++++++|.+.+++++...++.+++.. ++.+++++++
T Consensus 115 ~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~~~i~~a~ilyl~ 193 (434)
T PRK15074 115 VMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFAISPGHMNQLRPESIPEDVIAGASALVLT 193 (434)
T ss_pred EeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEEEecChhhcCChhHCCHhHhccCCEEEEe
Confidence 99966 677788887 5899999886654 48999999999999999999888877777776654 6788899886
Q ss_pred CC---------ChHHHHHHHHHHHhcCCcEEEcCCCCcccCC-HHHH-HHHhhcccEEEeCHHHHHHhhcCCCCC--HHH
Q psy8856 142 PD---------NCCNMIKHIKKILKLKIPFIFDPGQSLSMFT-KEEL-IKIIKKSSYIIVNEYESKLLVSKTSLS--LQK 208 (312)
Q Consensus 142 ~~---------~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~l-~~ll~~~dvl~~n~~E~~~l~~~~~~~--~~~ 208 (312)
+. .++...++++.+++.|+++++|++++...+. .+.+ ..+++++|++++|++|++.+++..+.+ .+.
T Consensus 194 Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~LtG~~d~eea~~~ 273 (434)
T PRK15074 194 AYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEALTGESDPLLASDK 273 (434)
T ss_pred eeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHHhCCCCHHHHHHH
Confidence 53 3567788999999999999999998643332 2233 346679999999999999999864321 234
Q ss_pred HhhcCCEEEEeeCCCceEEEecCC------ce--------------------------------EEcCCc---ccCCcCC
Q psy8856 209 INEQVKVLIVTRGELGSDIFLNNE------RK--------------------------------IKIPCV---KADRIVD 247 (312)
Q Consensus 209 l~~g~~~vvvt~G~~G~~~~~~~~------~~--------------------------------~~~~~~---~~~~~vd 247 (312)
+.++++.|+||+|++|++++..+. .. .++|++ +++ ++|
T Consensus 274 L~~~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vD 352 (434)
T PRK15074 274 ALDWVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEK-IMN 352 (434)
T ss_pred HHcCCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccccccccccCcccCCCCc-cee
Confidence 555789999999999999975301 21 278888 665 999
Q ss_pred CCCchhhhHHHHHHHHHcCC--------------------CHHHHHHHHHHHhchheeeccC--CCCCCChHH
Q psy8856 248 PTGCGDAFRSGVLFGIINNL--------------------DWYTTGRLSSLMGSTEISHQGG--QKHCPSLSE 298 (312)
Q Consensus 248 t~GaGDaf~ag~~~~l~~g~--------------------~~~~a~~~a~a~aa~~~~~~g~--~~~~~~~~e 298 (312)
||||||+|.|||+|++.+|+ ++.+|+++|+++|+..+++.|+ ..++|+.++
T Consensus 353 ttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p~~~~ 425 (434)
T PRK15074 353 TNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLPERED 425 (434)
T ss_pred CCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Confidence 99999999999999999998 8999999999999999999999 434566543
No 21
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=5.1e-40 Score=289.07 Aligned_cols=278 Identities=21% Similarity=0.319 Sum_probs=230.8
Q ss_pred cceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHHHHHHc
Q psy8856 7 GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYL 84 (312)
Q Consensus 7 G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~~l~~~ 84 (312)
|+.++|.+..++ ++|. + +...+.......+||++.|+|.+|++||.++.+++.+|+| +..+++.|++.
T Consensus 1 G~~~~D~~~~~~-~~p~---~------~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~ 70 (293)
T TIGR02152 1 GSINMDLVLRTD-RLPK---P------GETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSN 70 (293)
T ss_pred CCceEeEEEEeC-CCCC---C------CCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHc
Confidence 789999999998 7654 2 3345566778999999999999999999999999999999 78899999999
Q ss_pred CCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC----CcCCceEEEECCCC-hHHHHHHHHHHHhcC
Q psy8856 85 GISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI----NNADIKIAIISPDN-CCNMIKHIKKILKLK 159 (312)
Q Consensus 85 gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (312)
||++++++..++.+|+++++++++++++.+..+.+....++++++. .++.+++++++... .+.+..+++.+++.+
T Consensus 71 gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
T TIGR02152 71 GIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAKIAKKHG 150 (293)
T ss_pred CCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecCCCHHHHHHHHHHHHHcC
Confidence 9999998877777899999999887887777666655555554443 25678888887654 467778888888899
Q ss_pred CcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC---H----HHHhh-cCCEEEEeeCCCceEEEecC
Q psy8856 160 IPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS---L----QKINE-QVKVLIVTRGELGSDIFLNN 231 (312)
Q Consensus 160 ~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~---~----~~l~~-g~~~vvvt~G~~G~~~~~~~ 231 (312)
.++++|++..... ...++++++|++++|++|++.+.+....+ . +.+.+ +++.++||.|++|++++++
T Consensus 151 ~~v~~D~~~~~~~----~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~- 225 (293)
T TIGR02152 151 VKVILNPAPAIKD----LDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSK- 225 (293)
T ss_pred CEEEEECCcCccc----chHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeC-
Confidence 9999999754221 12578899999999999999998864322 1 22323 8999999999999999998
Q ss_pred CceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHH
Q psy8856 232 ERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEID 300 (312)
Q Consensus 232 ~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~ 300 (312)
++.+++|+++++ ++||+||||+|+|||++++.+|+++++|+++|+++|+.++++.|+....|+.++++
T Consensus 226 ~~~~~~~~~~~~-~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 226 DESKLIPAFKVK-AVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred CceeEccCCCCc-eeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCcccCCCChHHcC
Confidence 788899998886 99999999999999999999999999999999999999999999987668887763
No 22
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=5.8e-40 Score=284.66 Aligned_cols=262 Identities=23% Similarity=0.287 Sum_probs=213.7
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|++++|++..++ ++|. + +...+.......+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~il~iG~~~iD~~~~~~-~~~~---~------~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~ 70 (265)
T cd01947 1 KIAVVGHVEWDIFLSLD-APPQ---P------GGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLE 70 (265)
T ss_pred CEEEEeeeeEEEEEEec-CCCC---C------CceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHH
Confidence 69999999999999988 6543 2 3344556778999999999999999999999999999999 778999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCCcCCceEEEECCCChHHHHHHHHHHHhcC
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLK 159 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (312)
.|++ ++++.++... ...|+.+++.+++++++.+....+.. ........++.++++++++... ..++++.+++.+
T Consensus 71 ~l~~-~~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~ 144 (265)
T cd01947 71 ELES-GGDKHTVAWR-DKPTRKTLSFIDPNGERTITVPGERL--EDDLKWPILDEGDGVFITAAAV--DKEAIRKCRETK 144 (265)
T ss_pred HHHh-cCCcceEEec-CCCCceEEEEECCCCcceEEecCCCC--cccCCHhHhccCCEEEEecccc--cHHHHHHHHHhC
Confidence 9999 9988887654 45899998988888887776544332 1112223356889999988652 345666777664
Q ss_pred CcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHHh-hcCCEEEEeeCCCceEEEecCCceEEcC
Q psy8856 160 IPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKIN-EQVKVLIVTRGELGSDIFLNNERKIKIP 238 (312)
Q Consensus 160 ~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~ 238 (312)
.+++|++.+.. ...++++++++|++++|++|+..+.+ .+.+. .+++.++||+|++|++++++ ++.+++|
T Consensus 145 -~~~~d~~~~~~---~~~~~~~~~~~d~~~~n~~e~~~l~~-----~~~~~~~~~~~viit~G~~Ga~~~~~-~~~~~~~ 214 (265)
T cd01947 145 -LVILQVTPRVR---VDELNQALIPLDILIGSRLDPGELVV-----AEKIAGPFPRYLIVTEGELGAILYPG-GRYNHVP 214 (265)
T ss_pred -CeEeccCcccc---chhHHHHhhhCCEEEeCHHHHHHhhh-----HHHHHhccCCEEEEEeCCCCeEEEEC-CeeEECC
Confidence 57889876533 24567899999999999999998864 23343 48999999999999999998 8889999
Q ss_pred CcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCC
Q psy8856 239 CVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ 290 (312)
Q Consensus 239 ~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~ 290 (312)
+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+.++++.|++
T Consensus 215 ~~~~~-vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 215 AKKAK-VPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHFGPY 265 (265)
T ss_pred CCCCC-CCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99886 9999999999999999999999999999999999999999999863
No 23
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=3.7e-40 Score=289.48 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=216.2
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
.|+++|+.++|++..++ ++|. +++ ..+.......+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~v~~iG~~~vD~~~~v~-~~p~---~~~------~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~ 70 (290)
T cd01939 1 AVLCVGLTVLDFITTVD-KYPF---EDS------DQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLD 70 (290)
T ss_pred CEEEEeeeeeEEEeeec-CCCC---CCc------ceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHH
Confidence 48999999999999998 7754 222 22334456779999999999999999999999999998 888999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEECCCChHHHHHHHHHHHh
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPDNCCNMIKHIKKILK 157 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (312)
.|+++||+++++...++..+..++++.++++++.+....+....++.+++.. .+.++++++++..++...++++.+++
T Consensus 71 ~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 150 (290)
T cd01939 71 DFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIHFEGRNPDETLRMMQHIEE 150 (290)
T ss_pred HHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEEEeccCHHHHHHHHHHHHH
Confidence 9999999999886666555666677777777776766666655565555443 36889999999887777788877777
Q ss_pred cC-------CcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH--HHH---hhcCCEEEEeeCCCce
Q psy8856 158 LK-------IPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL--QKI---NEQVKVLIVTRGELGS 225 (312)
Q Consensus 158 ~~-------~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~--~~l---~~g~~~vvvt~G~~G~ 225 (312)
.+ .++++|+... .+.+.++++++|++++|++|++.+ +....+. ..+ .++++.++||+|++|+
T Consensus 151 ~~~~~~~~~~~v~~d~~~~-----~~~~~~~l~~~di~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvvt~G~~G~ 224 (290)
T cd01939 151 HNNRRPEIRITISVEVEKP-----REELLELAAYCDVVFVSKDWAQSR-GYKSPEECLRGEGPRAKKAALLVCTWGDQGA 224 (290)
T ss_pred hcCcCCCcceEEEEEeccC-----chhhhhHHhhCCEEEEEhHHHHhc-CcCCHHHHHHhhhhhccCCcEEEEEcccCCe
Confidence 65 6788888653 234568999999999999988865 4322111 111 2368899999999999
Q ss_pred EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCC-HHHHHHHHHHHhchheeeccC
Q psy8856 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD-WYTTGRLSSLMGSTEISHQGG 289 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~-~~~a~~~a~a~aa~~~~~~g~ 289 (312)
++++++++.+++|+++..+++||+||||+|.|||+|++.+|++ +++|+++|+++|++++++.|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 225 GALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred EEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhhhcC
Confidence 9988635677899887545899999999999999999999995 999999999999999999874
No 24
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=6.5e-40 Score=296.23 Aligned_cols=286 Identities=13% Similarity=0.161 Sum_probs=220.4
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
.|+++|+.++|.+..++.++|. +++ ........+||++.|+|.++++||.++.++|.+|+| |+.+++
T Consensus 59 ~v~viG~~~vD~~~~~~~~~p~---~~~--------~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~ 127 (362)
T PRK09954 59 YCVVVGAINMDIRGMADIRYPQ---AAS--------HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLE 127 (362)
T ss_pred cEEEEEEEEEEEEEeeCCcCcC---CCC--------CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHH
Confidence 4889999999999887645653 222 122346779999999999999999999999999999 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCC-ccccCCccccCC----cCCceEEEECCCChH-HHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPG-AMQLSYDDNCIN----NADIKIAIISPDNCC-NMIKHIK 153 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~ 153 (312)
.|++.||+++++...++.+|+.++++.++++++.+..... ....++++.+.. +..+++++++...+. ....+++
T Consensus 128 ~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 207 (362)
T PRK09954 128 ETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCNLTAEALEWVFT 207 (362)
T ss_pred HHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHH
Confidence 9999999999988888878888888777766666544321 223344432222 356777877765443 3333444
Q ss_pred HHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH-------HHHh-hcCCEEEEeeCCCce
Q psy8856 154 KILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL-------QKIN-EQVKVLIVTRGELGS 225 (312)
Q Consensus 154 ~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~-------~~l~-~g~~~vvvt~G~~G~ 225 (312)
.+ ++.++++|+..... ...++++++++|++++|++|++.+++....+. +.+. .+++.++||+|++|+
T Consensus 208 ~a--~~~~v~~D~~~~~~---~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~ 282 (362)
T PRK09954 208 LA--DEIPVFVDTVSEFK---AGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDESV 282 (362)
T ss_pred hC--CCCcEEEECCCHHH---hhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCccE
Confidence 33 47999999975321 12357789999999999999999988643221 1232 389999999999999
Q ss_pred EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHH
Q psy8856 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFK 304 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~ 304 (312)
++++++++.+++|+++++ ++|||||||+|+|||++++.+|+++++|+++|+++|+++..+..+....++++.++++++
T Consensus 283 ~~~~~~~~~~~~~~~~v~-vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~~ 360 (362)
T PRK09954 283 FCSEKDGEQFLLTAPAHT-TVDSFGADDGFMAGLVYSFLEGYSFRDSARFAMACAAISRASGSLNNPTLSADNALSLVP 360 (362)
T ss_pred EEEeCCCceEeccCCCcc-cccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHhc
Confidence 888763556788888886 999999999999999999999999999999999999999777666666788888888764
No 25
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=1.6e-39 Score=287.45 Aligned_cols=275 Identities=17% Similarity=0.188 Sum_probs=222.3
Q ss_pred eecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHHHHHH
Q psy8856 5 ICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKY 83 (312)
Q Consensus 5 ~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~l~~ 83 (312)
|.-++++|.+..++ ++|. +...+..+....+||++.|+|.+|++||.++.++|.+|+| ++.+++.|++
T Consensus 4 ~~~~~~~D~~~~~~-~~~~----------g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D~g~~~~~~L~~ 72 (304)
T TIGR03828 4 VTLNPAIDLTIELD-GLTL----------GEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGFTGDFIEALLRE 72 (304)
T ss_pred EEcchHHeEEEEcc-cccc----------CceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHH
Confidence 44589999999999 6742 3344566778999999999999999999999999999999 8899999999
Q ss_pred cCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC--------CcCCceEEEECCC-----ChHHHHH
Q psy8856 84 LGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI--------NNADIKIAIISPD-----NCCNMIK 150 (312)
Q Consensus 84 ~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~ 150 (312)
.||+++++...+ .++.+++..+.+++++.....+.. ++...+. .+++++++++++. ..+.+..
T Consensus 73 ~gId~~~~~~~~--~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~ 148 (304)
T TIGR03828 73 EGIKTDFVRVPG--ETRINVKIKEPSGTETKLNGPGPE--ISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAE 148 (304)
T ss_pred CCCcceEEECCC--CCeeeEEEEeCCCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHH
Confidence 999999887653 566777777777777665554432 2222221 3568899999754 2467788
Q ss_pred HHHHHHhcCCcEEEcCCCCcccCCHHHHHHHh-hcccEEEeCHHHHHHhhcCCCCCHHH-------Hh-hcCCEEEEeeC
Q psy8856 151 HIKKILKLKIPFIFDPGQSLSMFTKEELIKII-KKSSYIIVNEYESKLLVSKTSLSLQK-------IN-EQVKVLIVTRG 221 (312)
Q Consensus 151 ~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll-~~~dvl~~n~~E~~~l~~~~~~~~~~-------l~-~g~~~vvvt~G 221 (312)
+++.+++.+.++++|++.. .+.+.+ ..+|++++|++|++.+++....+.++ +. .+.+.+|||+|
T Consensus 149 ~~~~~~~~~~~v~~D~~~~-------~~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G 221 (304)
T TIGR03828 149 LIALAREKGAKVILDTSGE-------ALRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLG 221 (304)
T ss_pred HHHHHHHcCCEEEEECChH-------HHHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccC
Confidence 8888999999999999742 223333 46789999999999999865333221 22 38899999999
Q ss_pred CCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHH
Q psy8856 222 ELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301 (312)
Q Consensus 222 ~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~ 301 (312)
++|++++++ ++.+++|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+++|++.|+. +|+++|+++
T Consensus 222 ~~G~~~~~~-~~~~~~~~~~~~-vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~Aa~~~~~~G~~--~p~~~~~~~ 297 (304)
T TIGR03828 222 ADGALLVTK-EGALFAQPPKGE-VVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAFSEGTG--LPDPEDIEE 297 (304)
T ss_pred CCCcEEEcC-CceEEEeCCCcc-ccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCC--CCCHHHHHH
Confidence 999999988 777888988886 9999999999999999999999999999999999999999999986 789999998
Q ss_pred HHHH
Q psy8856 302 RFKE 305 (312)
Q Consensus 302 ~~~~ 305 (312)
++++
T Consensus 298 ~~~~ 301 (304)
T TIGR03828 298 LLPQ 301 (304)
T ss_pred HHhc
Confidence 8765
No 26
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=4.2e-39 Score=285.57 Aligned_cols=287 Identities=15% Similarity=0.144 Sum_probs=227.2
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLK 79 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~ 79 (312)
|-..+.=|+++|.+..++ +||. +...+..+..+.+||++.|+|.+|++||.++.++|.+|+| +..+++
T Consensus 4 ~~~~~~~~p~~D~~~~~~-~~~~----------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~~~ 72 (312)
T PRK09513 4 RVATITLNPAYDLVGFCP-EIER----------GEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGFQQ 72 (312)
T ss_pred eEEEEecChHHeEEEEcC-ceec----------CCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHHHH
Confidence 434466699999999999 7752 3345567778999999999999999999999999999999 444578
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccc--------cCCcCCceEEEECCCC-----hH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDN--------CINNADIKIAIISPDN-----CC 146 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~ 146 (312)
.|+++||++.++ ..++ +++.++++.++++++......+. .++..+ ...+++++++++++.. .+
T Consensus 73 ~l~~~gv~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~ 148 (312)
T PRK09513 73 LFSELGIANRFQ-VVQG-RTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPE 148 (312)
T ss_pred HHHHcCCCccEE-ECCC-CCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHH
Confidence 999999998765 4344 67777777777777654444432 122111 2235788998888653 36
Q ss_pred HHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHH-------Hh-hcCCEEEE
Q psy8856 147 NMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQK-------IN-EQVKVLIV 218 (312)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~-------l~-~g~~~vvv 218 (312)
.+.++++.+++++.++++|++.. .....+....+++++|++|+..+++....+.++ +. .+++.++|
T Consensus 149 ~~~~~~~~a~~~g~~v~~D~~~~------~~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv 222 (312)
T PRK09513 149 AFTDWMTRLRSQCPCIIFDSSRE------ALVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVI 222 (312)
T ss_pred HHHHHHHHHHhcCCEEEEECChH------HHHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 77788888888899999999742 112234457889999999999999875443322 32 37999999
Q ss_pred eeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHH
Q psy8856 219 TRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSE 298 (312)
Q Consensus 219 t~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~e 298 (312)
|+|.+|++++.+ ++.++.++++++ ++||+||||+|+|||++++++|+++++|+++|+++|+.++++.|.. .++.+|
T Consensus 223 t~G~~G~~~~~~-~~~~~~~~~~~~-~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~Aa~~~~~~~~~--~~~~~e 298 (312)
T PRK09513 223 SLGAEGALWVNA-SGEWIAKPPACD-VVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVSALAVSQSNVG--ITDRPQ 298 (312)
T ss_pred EeCCCCcEEEeC-CceEEecCCCcc-ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCC--CCCHHH
Confidence 999999999888 777888888886 9999999999999999999999999999999999999999999854 889999
Q ss_pred HHHHHHHhhcccCC
Q psy8856 299 IDQRFKEAFGYRYN 312 (312)
Q Consensus 299 v~~~~~~~~~~~~~ 312 (312)
+++++.+..-+++|
T Consensus 299 ~~~~l~~~~~~~~~ 312 (312)
T PRK09513 299 LAAMMARVDLTPFN 312 (312)
T ss_pred HHHHHhceEEEeCC
Confidence 99999888877776
No 27
>KOG2855|consensus
Probab=100.00 E-value=2.2e-39 Score=276.25 Aligned_cols=296 Identities=21% Similarity=0.298 Sum_probs=244.2
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
+.|+++|+..+|++.... ++|. + +.+...+.+..-+||.+.|+|++++|||.++.|+|.+|+| |..++
T Consensus 10 ~~vv~fGs~~~D~V~~~~-~~p~---~------ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~ 79 (330)
T KOG2855|consen 10 PLVVVFGSMLIDFVPSTR-RLPN---A------GETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLL 79 (330)
T ss_pred ceEEEeccceeeeeeccc-cCCC---c------cccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHH
Confidence 358999999999999998 7765 3 2255567778899999999999999999999999999999 78899
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccc----cCCcCCceEEEECCCC------hHHH
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDN----CINNADIKIAIISPDN------CCNM 148 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~ 148 (312)
+.|++.||+++++...++.+|+..++.+..+|++...+..+++....++. ...++.+.+++..... +...
T Consensus 80 ~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~ 159 (330)
T KOG2855|consen 80 DILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLH 159 (330)
T ss_pred HHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHH
Confidence 99999999999999999999999999999999988888877765544432 1225677777665432 1222
Q ss_pred HHHHHHHHhcCCcEEEcCCCCcccCC-----HHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHH-hhcCCEEEEeeCC
Q psy8856 149 IKHIKKILKLKIPFIFDPGQSLSMFT-----KEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKI-NEQVKVLIVTRGE 222 (312)
Q Consensus 149 ~~~~~~~~~~~~~v~~D~~~~~~~~~-----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l-~~g~~~vvvt~G~ 222 (312)
...++.+++.+..++.||+.+.++|. ...+..++..+|++..+++|++.+++.......+| ..+.+.+|||.|+
T Consensus 160 ~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~~~~~L~~~~~k~viVTlG~ 239 (330)
T KOG2855|consen 160 IAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDDKILKLWHMKLKLVIVTLGE 239 (330)
T ss_pred HhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccchHHHHhccCCCEEEEEeCC
Confidence 22245667778888889998888873 45578889999999999999999987633333233 3477999999999
Q ss_pred CceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcC--CC---HHHHHHHHHHHhchheeeccCCCCCCChH
Q psy8856 223 LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINN--LD---WYTTGRLSSLMGSTEISHQGGQKHCPSLS 297 (312)
Q Consensus 223 ~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g--~~---~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ 297 (312)
+|+.||+++.+..++|+++++ +||||||||+|.||++..|.+| .+ +++++++|+++++..+++.|..+.+|+.+
T Consensus 240 kG~~y~tk~~~~~~v~~~~V~-~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~ 318 (330)
T KOG2855|consen 240 KGCRYYTKDFKGSHVPAFKVK-AVDTTGAGDSFVGALAVQLVRGSLLPELSLEEALRFANACGAITVQRKGAIPSMPTEK 318 (330)
T ss_pred CceEEEecCCCCCCCCCcccc-cccCCCchHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhhHHhhccCCCccCccHH
Confidence 999999983333599999997 9999999999999999999999 66 99999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy8856 298 EIDQRFKEAF 307 (312)
Q Consensus 298 ev~~~~~~~~ 307 (312)
+++..++...
T Consensus 319 ~~~~~~~~~~ 328 (330)
T KOG2855|consen 319 EVQSLLKSSV 328 (330)
T ss_pred HHHHHhhhcc
Confidence 9998877543
No 28
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=5.2e-39 Score=285.54 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=216.7
Q ss_pred cEeeecceeeeeEEe--cCCcc-cCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHH
Q psy8856 2 NSLICGSLAFDNIMR--FEGKF-SNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSS 76 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~ 76 (312)
+|+++|+.++|.+.. ++ ++ |....|. .........+|| +.|+|.+|++||.++.++|.+|+| +..
T Consensus 9 ~il~iG~~~iD~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~ 78 (315)
T TIGR02198 9 KVLVVGDVMLDRYWYGKVS-RISPEAPVPV--------VKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKR 78 (315)
T ss_pred cEEEECceeEeeeeeeccc-ccCCCCCCce--------EEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHH
Confidence 699999999999877 44 44 2111121 122344667888 799999999999999999999999 778
Q ss_pred HHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCc----cc----cCCcCCceEEEECCC-----
Q psy8856 77 YLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYD----DN----CINNADIKIAIISPD----- 143 (312)
Q Consensus 77 i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~----- 143 (312)
+++.|+++||++.++.+.++.+|+.+++..++++ ............++. .. ...++.++++++++.
T Consensus 79 i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~ 157 (315)
T TIGR02198 79 LEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ-QLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVL 157 (315)
T ss_pred HHHHHHHCCCCcceEEECCCCCcceEEEEEcCCe-EEEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCcc
Confidence 8999999999999888877788998888887643 332222211111221 11 122568889988643
Q ss_pred ChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC--CH----HHHh--hcCCE
Q psy8856 144 NCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSL--SL----QKIN--EQVKV 215 (312)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~--~~----~~l~--~g~~~ 215 (312)
.++.+..+++.+++.+.++++|++... ...++.+|++++|++|++.+++.... +. +.+. .|++.
T Consensus 158 ~~~~~~~~~~~a~~~g~~v~~D~~~~~--------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~l~~~~g~~~ 229 (315)
T TIGR02198 158 TPRVVQEVIAAARKHGKPVLVDPKGKD--------FSRYRGATLITPNRKEAEAAVGACDTEAELVQAAEKLLEELDLEA 229 (315)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeCCCcc--------hhhcCCCcEECCCHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 256678888999999999999998541 23578999999999999999883211 11 1232 27999
Q ss_pred EEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCC
Q psy8856 216 LIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPS 295 (312)
Q Consensus 216 vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~ 295 (312)
++||+|++|+++++++++.+++|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+++|++.|+. .++
T Consensus 230 vivT~G~~G~~~~~~~~~~~~~~~~~~~-vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~A~~~aa~~~~~~G~~--~~~ 306 (315)
T TIGR02198 230 LLVTRSEKGMTLFTREGEPIHIPAQARE-VYDVTGAGDTVIATLALALAAGASLEEACRLANAAAGVVVGKLGTA--TVS 306 (315)
T ss_pred EEEEcCCCCeEEEecCCCeEEecCCCCC-CCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCC--CCC
Confidence 9999999999998842678899998885 9999999999999999999999999999999999999999999988 579
Q ss_pred hHHHHHHH
Q psy8856 296 LSEIDQRF 303 (312)
Q Consensus 296 ~~ev~~~~ 303 (312)
.+++++.+
T Consensus 307 ~~~~~~~~ 314 (315)
T TIGR02198 307 PAELANAL 314 (315)
T ss_pred HHHHHHHh
Confidence 99997755
No 29
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=3.1e-40 Score=291.43 Aligned_cols=278 Identities=24% Similarity=0.392 Sum_probs=224.2
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
+|+++|+.++|++..++ ++ . ++ ..+.......+||.+.|+|.+|++||.++.++|.+|+| |+.+++
T Consensus 3 ~v~~iG~~~iD~~~~~~-~~-~---~~-------~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~ 70 (301)
T PF00294_consen 3 KVLVIGEVNIDIIGYVD-RF-K---GD-------LVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILE 70 (301)
T ss_dssp EEEEESEEEEEEEEESS-SH-T---TS-------EEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHH
T ss_pred cEEEECccceEEEeecC-Cc-C---Cc-------ceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhh
Confidence 59999999999999988 43 1 11 12455668889999999999999999999999999999 778999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCcccc--CCcCCceEEEECC-----CChHHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNC--INNADIKIAIISP-----DNCCNMIKHI 152 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~ 152 (312)
.|++.||+++++.+.++.+|+++++..++++++.+....+....+..+.+ ..+...+++++++ ..++...+.+
T Consensus 71 ~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (301)
T PF00294_consen 71 ELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLLEAL 150 (301)
T ss_dssp HHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHHHHH
T ss_pred ccccccccccccccccccccceeEeeecccccceeeeccccccccccccccccccccccceeecccccccccccceeeec
Confidence 99999999999988787899999999998888888887776655554433 2246788999888 5555544444
Q ss_pred -HHHHhcC--CcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHH--------hhcCCEEEEeeC
Q psy8856 153 -KKILKLK--IPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKI--------NEQVKVLIVTRG 221 (312)
Q Consensus 153 -~~~~~~~--~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l--------~~g~~~vvvt~G 221 (312)
+.+++.+ .+++.++.... ..+.+.++++++|++++|++|++.+++....+.+++ ..+++.+++|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G 227 (301)
T PF00294_consen 151 AKAAKKNGPFDPVFRDPSWDD---LREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLG 227 (301)
T ss_dssp HHHHHHTTEEEEEEEGGGSHH---HHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEG
T ss_pred ccccccccccccccccccccc---cchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhcccc
Confidence 4444444 23444443211 256788899999999999999999999875444332 138999999999
Q ss_pred CCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCC
Q psy8856 222 ELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPS 295 (312)
Q Consensus 222 ~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~ 295 (312)
++|++++++ ++.+++++++..+++||+||||+|+|||++++.+|+++++|+++|+++|+.+|++.|+..++||
T Consensus 228 ~~G~~~~~~-~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 228 EDGALYYTN-DESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp GGEEEEEET-TEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred ccCcccccc-cccccccccccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence 999999998 9999998854334999999999999999999999999999999999999999999999877665
No 30
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=7.4e-39 Score=283.62 Aligned_cols=281 Identities=17% Similarity=0.197 Sum_probs=221.6
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLK 79 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~ 79 (312)
|-+.+..||++|++..++ ++|. + .........+.+||++.|+|.+|++||.++.++|.+|++ |+.+++
T Consensus 1 ~~~~~t~np~~D~~~~~~-~~~~---~-------~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd~~G~~i~~ 69 (309)
T PRK13508 1 MILTVTLNPSIDISYPLD-ELKL---D-------TVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGGELGQFIAE 69 (309)
T ss_pred CEEEEecChHHeEEEEeC-Ceee---C-------CeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecChhHHHHHH
Confidence 667889999999999999 7743 1 122345567889999999999999999999999999977 889999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccc--------cCCcCCceEEEECCCCh-----H
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDN--------CINNADIKIAIISPDNC-----C 146 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~ 146 (312)
.|++ ||+++++.. ++ +|+.+++.++ ++++++...++.. +..+. ...+.+++++++++..+ +
T Consensus 70 ~l~~-gI~~~~~~~-~~-~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 143 (309)
T PRK13508 70 HLDD-QIKHAFYKI-KG-ETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVD 143 (309)
T ss_pred HHHc-CCCceEEEC-CC-CCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHH
Confidence 9999 999987654 33 5666666665 5677666655542 21111 11256889999886532 4
Q ss_pred HHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC-CHH---H----H-hhcCCEEE
Q psy8856 147 NMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSL-SLQ---K----I-NEQVKVLI 217 (312)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~-~~~---~----l-~~g~~~vv 217 (312)
....+++.+++.+.++++|++... ...+...+..+|++++|++|++.+++.... +.+ + + ..+++.++
T Consensus 144 ~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vv 219 (309)
T PRK13508 144 YYAQLIELANQAGKPVVLDCSGAA----LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWII 219 (309)
T ss_pred HHHHHHHHHHHCCCEEEEECCcHH----HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 567788888999999999997421 122223356899999999999999986421 221 1 1 23899999
Q ss_pred EeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChH
Q psy8856 218 VTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLS 297 (312)
Q Consensus 218 vt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ 297 (312)
||+|++|++++++ ++.+++|+++++ ++||+||||+|+|||++++.+|+++++|+++|+++|++++++.+.. ..+..
T Consensus 220 vT~G~~G~~~~~~-~~~~~~~~~~v~-vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~aa~~~~~~~~~--~~~~~ 295 (309)
T PRK13508 220 VSLGADGAFAKHN-DTFYKVDIPKIE-VVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLGMLNAQEKQTG--HVNMA 295 (309)
T ss_pred EecCCCceEEEeC-CceEEEeCCCcc-ccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCcC--CCCHH
Confidence 9999999999887 888889999886 9999999999999999999999999999999999999999999988 67888
Q ss_pred HHHHHHHHh
Q psy8856 298 EIDQRFKEA 306 (312)
Q Consensus 298 ev~~~~~~~ 306 (312)
++++++++.
T Consensus 296 ~~~~~~~~i 304 (309)
T PRK13508 296 NYDELYNQI 304 (309)
T ss_pred HHHHHHhce
Confidence 888887654
No 31
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.5e-38 Score=281.60 Aligned_cols=280 Identities=16% Similarity=0.145 Sum_probs=223.8
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLK 79 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~ 79 (312)
|-+.+.-||.+|.++.++ +++. +...+.......+||++.|+|.+|++||.++.+++.+|++ |+.+++
T Consensus 3 ~i~~~~~~p~~d~~~~~~-~~~~----------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~~~g~~i~~ 71 (309)
T PRK10294 3 RIYTLTLAPSLDSATITP-QIYP----------EGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGGATGEHLVS 71 (309)
T ss_pred eEEEEecChHHeEEEEeC-ceee----------CCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecCccHHHHHH
Confidence 446777899999999999 7742 3355666677889999999999999999999999999977 889999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCcccc-------CCcCCceEEEECCCCh-----HH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNC-------INNADIKIAIISPDNC-----CN 147 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~ 147 (312)
.|++.||+++++...+. .+...++..++++++++...++.. ++.+.+ ..++..+++++++..+ +.
T Consensus 72 ~l~~~gv~~~~~~~~~~-~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~ 148 (309)
T PRK10294 72 LLADENVPVATVEAKDW-TRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEK 148 (309)
T ss_pred HHHHcCCCceEEECCCC-CeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHH
Confidence 99999999999877554 344445667777777666555432 333222 1245678888876543 67
Q ss_pred HHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHH--hhcccEEEeCHHHHHHhhcCCCCCHH-------HHhh-c-CCEE
Q psy8856 148 MIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKI--IKKSSYIIVNEYESKLLVSKTSLSLQ-------KINE-Q-VKVL 216 (312)
Q Consensus 148 ~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~l--l~~~dvl~~n~~E~~~l~~~~~~~~~-------~l~~-g-~~~v 216 (312)
+.++++.+++.+.++++|++.. .+... ++++|++++|++|++.+++....+.+ .+.+ + ++.+
T Consensus 149 ~~~~~~~a~~~g~~v~~D~~~~-------~~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~v 221 (309)
T PRK10294 149 LTQLISAAQKQGIRCIIDSSGD-------ALSAALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRV 221 (309)
T ss_pred HHHHHHHHHHcCCeEEEeCCCH-------HHHHHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEE
Confidence 7788888999999999999632 12333 45899999999999999986543322 2322 4 7899
Q ss_pred EEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCCh
Q psy8856 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL 296 (312)
Q Consensus 217 vvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~ 296 (312)
+||+|.+|++++++ ++.+++++++++ ++||+||||+|.|||++++.+|+++.+|+++|+++|+++|++.|+. ..+.
T Consensus 222 vvT~G~~G~~~~~~-~~~~~~~~~~v~-vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~aa~~v~~~G~~--~~~~ 297 (309)
T PRK10294 222 VVSLGPQGALGVDS-ENCIQVVPPPVK-SQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTR--LCSH 297 (309)
T ss_pred EEecCCCceEEEcC-CccEEEeCCCcc-cCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCC--CCCH
Confidence 99999999999988 777888888886 9999999999999999999999999999999999999999999998 5788
Q ss_pred HHHHHHHHH
Q psy8856 297 SEIDQRFKE 305 (312)
Q Consensus 297 ~ev~~~~~~ 305 (312)
++++++.++
T Consensus 298 ~~~~~~~~~ 306 (309)
T PRK10294 298 DDTQKIYAY 306 (309)
T ss_pred HHHHHHHHH
Confidence 888888764
No 32
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=1.2e-38 Score=276.36 Aligned_cols=254 Identities=18% Similarity=0.212 Sum_probs=204.5
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
||+++|+.++|.+... ....+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~v~~iG~~~~D~~~~~------------------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~ 56 (264)
T cd01940 1 RLAAIGDNVVDKYLHL------------------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRS 56 (264)
T ss_pred CeEEEcceEEEEeccC------------------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHH
Confidence 7999999999998432 15678999999999999999999999999998 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeC-CccccCC--ccccCCcCCceEEEECCCC-hHHHHHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP-GAMQLSY--DDNCINNADIKIAIISPDN-CCNMIKHIKKI 155 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 155 (312)
.|++.||+++++...++ +|+.+++. .+++++.+..+. +...... ...+..+.++++++++... .+.+.++++.+
T Consensus 57 ~l~~~gI~~~~v~~~~~-~t~~~~~~-~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 134 (264)
T cd01940 57 TLKRLGVDISHCRVKEG-ENAVADVE-LVDGDRIFGLSNKGGVAREHPFEADLEYLSQFDLVHTGIYSHEGHLEKALQAL 134 (264)
T ss_pred HHHHcCCChhheEEcCC-CCceEEEE-ecCCceEEEeecCCcHHhcccCcccHhHHhcCCEEEEcccccHHHHHHHHHHH
Confidence 99999999999877554 78887754 455666665543 3322221 1222335788999998765 46778888999
Q ss_pred HhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC--CHHHH-hhcCCEEEEeeCCCceEEEecCC
Q psy8856 156 LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSL--SLQKI-NEQVKVLIVTRGELGSDIFLNNE 232 (312)
Q Consensus 156 ~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~--~~~~l-~~g~~~vvvt~G~~G~~~~~~~~ 232 (312)
++.++++++|++.+ |..+.+.++++++|++++|++|... ... ..+.+ ..+++.++||+|++|++++++ +
T Consensus 135 ~~~g~~v~~D~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~-~ 206 (264)
T cd01940 135 VGAGALISFDFSDR---WDDDYLQLVCPYVDFAFFSASDLSD----EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDG-A 206 (264)
T ss_pred HHcCCEEEEcCccc---CCHHHHHhhcccCCEEEechhhcCc----chHHHHHHHHHHcCCCEEEEEECCCCeEEEeC-C
Confidence 99999999999875 3345577889999999999876531 110 11223 338999999999999999998 8
Q ss_pred ceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCC-HHHHHHHHHHHhchheeeccCC
Q psy8856 233 RKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD-WYTTGRLSSLMGSTEISHQGGQ 290 (312)
Q Consensus 233 ~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~-~~~a~~~a~a~aa~~~~~~g~~ 290 (312)
+.+++|+++++ ++||+||||+|.|||++++.+|++ +++++++|+++|++++++.|+.
T Consensus 207 ~~~~~~~~~~~-~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~~G~~ 264 (264)
T cd01940 207 VFYSVAPRPVE-VVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGHEGAF 264 (264)
T ss_pred eEEecCCcCCC-CCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcccCCC
Confidence 88899999886 999999999999999999999999 9999999999999999999863
No 33
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=2.6e-38 Score=279.71 Aligned_cols=270 Identities=20% Similarity=0.235 Sum_probs=209.6
Q ss_pred cEeeecceeeeeEEecC-CcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 2 NSLICGSLAFDNIMRFE-GKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
||+++|+.++|++...+ +++|. +.... . .........+|| +.|+|.+|++||.++.++|.+|+| |+.++
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~---~~~~~--~--~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~ 72 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISP---EAPVP--V--VKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLR 72 (304)
T ss_pred CEEEEcceeEEeeEeeccccccC---CCCcc--e--EEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHH
Confidence 79999999999988753 25532 11111 1 112334667899 699999999999999999999999 78899
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCcc--------ccCCcCCceEEEECCC-----Ch
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDD--------NCINNADIKIAIISPD-----NC 145 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~ 145 (312)
+.|+++||+++++ ..++.+|+.++++.+++ ++.+....+....++.. ....++.++++++++. ..
T Consensus 73 ~~l~~~gI~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~ 150 (304)
T cd01172 73 KLLEKEGIDTDGI-VDEGRPTTTKTRVIARN-QQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTP 150 (304)
T ss_pred HHHHhCCCCcceE-ecCCCCceEEEEEecCC-cEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCH
Confidence 9999999999884 45666788887777654 44444433222222211 1122578899988642 34
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC---H----HHHh--hcCCEE
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS---L----QKIN--EQVKVL 216 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~---~----~~l~--~g~~~v 216 (312)
+....+++.+++.+.++++|++.+.. .+++++|++++|++|++.+++....+ . +.+. .+++.+
T Consensus 151 ~~~~~~~~~a~~~~~~v~~D~~~~~~--------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~v 222 (304)
T cd01172 151 RVIEALIAAARELGIPVLVDPKGRDY--------SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEAL 222 (304)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCcch--------hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCeE
Confidence 56778888888899999999986421 56789999999999999998864222 1 2232 279999
Q ss_pred EEeeCCCceEEEe-cCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCC
Q psy8856 217 IVTRGELGSDIFL-NNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQK 291 (312)
Q Consensus 217 vvt~G~~G~~~~~-~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~ 291 (312)
+||+|++|+++++ + ++.+++|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+++|++.|+..
T Consensus 223 vvt~G~~G~~~~~~~-~~~~~~~~~~~~-vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~Aa~~~~~~g~~~ 296 (304)
T cd01172 223 LVTLGEEGMTLFERD-GEVQHIPALAKE-VYDVTGAGDTVIATLALALAAGADLEEAAFLANAAAGVVVGKVGTAP 296 (304)
T ss_pred EEEcCCCccEEEcCC-CcEEEecCCCCC-CCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhheeeecCCCCC
Confidence 9999999999998 6 788999999986 99999999999999999999999999999999999999999999874
No 34
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=9.5e-38 Score=275.92 Aligned_cols=277 Identities=19% Similarity=0.207 Sum_probs=220.3
Q ss_pred eecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHHHHHH
Q psy8856 5 ICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKY 83 (312)
Q Consensus 5 ~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~l~~ 83 (312)
|-=++.+|++..++ +++ + +...+.......+||.+.|+|.++++||.++.++|.+|+| ++.+++.|++
T Consensus 4 ~~~~~~~D~~~~~~-~~~----~------~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D~g~~i~~~l~~ 72 (303)
T TIGR03168 4 VTLNPAIDLTIEVD-GLT----P------GEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGFTGEFIEALLAE 72 (303)
T ss_pred EEcchHHeEEEEcC-ccc----c------CceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCchhHHHHHHHHH
Confidence 34478899999998 552 2 2344455667889999999999999999999999999999 8889999999
Q ss_pred cCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC--------CcCCceEEEECCC-----ChHHHHH
Q psy8856 84 LGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI--------NNADIKIAIISPD-----NCCNMIK 150 (312)
Q Consensus 84 ~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~ 150 (312)
.||++.++.... .|+.+++..++++++......+. .++.+.+. .++++++++++.. ..+....
T Consensus 73 ~gI~~~~i~~~~--~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 148 (303)
T TIGR03168 73 EGIKNDFVEVKG--ETRINVKIKESSGEETELNEPGP--EISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQ 148 (303)
T ss_pred cCCCceEEECCC--CCEEeEEEEeCCCCEEEEeCcCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHH
Confidence 999999887642 56666676777777665554433 23333222 2568899988753 2356778
Q ss_pred HHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHH-------HHh-hcCCEEEEeeCC
Q psy8856 151 HIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQ-------KIN-EQVKVLIVTRGE 222 (312)
Q Consensus 151 ~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~-------~l~-~g~~~vvvt~G~ 222 (312)
+++.+++.++++++|++.. .....+..++|++++|++|+..+++....+.+ .+. .+.+.++||+|.
T Consensus 149 ~~~~~~~~g~~v~~D~~~~------~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~ 222 (303)
T TIGR03168 149 LIAIARKRGAKVILDTSGE------ALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGA 222 (303)
T ss_pred HHHHHHHCCCEEEEECCcH------HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecC
Confidence 8888889999999999742 11123345899999999999999987433222 122 378899999999
Q ss_pred CceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHH
Q psy8856 223 LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQR 302 (312)
Q Consensus 223 ~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~ 302 (312)
+|++++++ ++.+++|+++++ ++||+||||+|.|+|++++.+|+++.+|+++|+++|+++|++.|+. .|+.+|++++
T Consensus 223 ~G~~~~~~-~~~~~~~~~~~~-~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~aa~~~~~~G~~--~~~~~~~~~~ 298 (303)
T TIGR03168 223 DGALLVTK-EGALKATPPKVE-VVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFSPGTG--LPDPEDVEEL 298 (303)
T ss_pred CCcEEEeC-CceEEeeCCcce-eecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcC--CCCHHHHHHH
Confidence 99999998 888899998886 8999999999999999999999999999999999999999999996 6899999998
Q ss_pred HHHh
Q psy8856 303 FKEA 306 (312)
Q Consensus 303 ~~~~ 306 (312)
+.+.
T Consensus 299 ~~~~ 302 (303)
T TIGR03168 299 LDQV 302 (303)
T ss_pred Hhhc
Confidence 8753
No 35
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=1.4e-38 Score=275.19 Aligned_cols=254 Identities=18% Similarity=0.188 Sum_probs=200.5
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYL 78 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~ 78 (312)
|+|+++|++++|.+...+ +..+||++.|+|.+|++||.++.++|.+|+| ++.++
T Consensus 1 ~~v~~iG~~~~D~~~~~~------------------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~ 56 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG------------------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLK 56 (260)
T ss_pred CeEEEeccceeeecccCC------------------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHH
Confidence 899999999999985543 3678999999999999999999999999999 77889
Q ss_pred HHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEe-CCcccc--CCccccCCcCCceEEEECCCChHHHHHHHHHH
Q psy8856 79 KHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH-PGAMQL--SYDDNCINNADIKIAIISPDNCCNMIKHIKKI 155 (312)
Q Consensus 79 ~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (312)
+.|++.||+++++...++ +|+.+++.++ ++++.+... .+.... +++.++..+..+++++++... ...++++.+
T Consensus 57 ~~l~~~gI~~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~--~~~~~~~~~ 132 (260)
T PRK09813 57 QDLARMGVDISHVHTKHG-VTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHAAIWG--HAEDAFPQL 132 (260)
T ss_pred HHHHHcCCcchheeeecC-CCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEEEEeccc--hHHHHHHHH
Confidence 999999999999887664 7888777775 466655433 233332 233333345678888886422 235667777
Q ss_pred HhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHH-hhcCCEEEEeeCCCceEEEecCCce
Q psy8856 156 LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKI-NEQVKVLIVTRGELGSDIFLNNERK 234 (312)
Q Consensus 156 ~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l-~~g~~~vvvt~G~~G~~~~~~~~~~ 234 (312)
++.++++++|++.+. ..+.+..+++++|+++.|+++...-.. ...+.+ ..+++.++||+|++|++++++ ++.
T Consensus 133 ~~~~~~v~~D~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~g~~~viit~G~~Ga~~~~~-~~~ 205 (260)
T PRK09813 133 HAAGKLTAFDFSDKW---DSPLWQTLVPHLDYAFASAPQEDEFLR---LKMKAIVARGAGVVIVTLGENGSIAWDG-AQF 205 (260)
T ss_pred HHcCCeEEEEcCCCc---cHHHHHHhCCceeEEEecCCcchHHHH---HHHHHHHHcCCCEEEEEECCCceEEEEC-CEE
Confidence 889999999998653 234567889999999888653111000 011223 348899999999999999988 888
Q ss_pred EEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCC
Q psy8856 235 IKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ 290 (312)
Q Consensus 235 ~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~ 290 (312)
+++|+++++ ++||+||||+|.|||++++.+|+++++++++|+++|++++++.|+.
T Consensus 206 ~~~~~~~~~-~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~G~~ 260 (260)
T PRK09813 206 WRQAPEPVT-VVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYHGAW 260 (260)
T ss_pred EecCCcccC-CCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999986 9999999999999999999999999999999999999999999863
No 36
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=1.1e-38 Score=283.88 Aligned_cols=274 Identities=15% Similarity=0.139 Sum_probs=220.5
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHh-CC--Cc--eEEEEeecC-hH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL-NG--NP--LIVSILGKD-GS 75 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l-G~--~~--~~~~~vG~d-~~ 75 (312)
+++++|++++|.+...++ ..+...+||++.|+|+++++| |. ++ .+++.+|+| |+
T Consensus 1 ~~~~~G~~~~d~i~~~~~--------------------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D~G~ 60 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS--------------------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSDFPK 60 (328)
T ss_pred CccccCcEEeeccccCCC--------------------CccccccCCchhhHhhceeeecCCccccceeeEEecCCCCCH
Confidence 478999999999966651 234677999999999999999 54 66 889999999 88
Q ss_pred HHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEECCCCh---HHHHH
Q psy8856 76 SYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPDNC---CNMIK 150 (312)
Q Consensus 76 ~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~ 150 (312)
.+++.|++.||++++ ...++.+|+.+++.+++++++.+....+....+..+++.. +..++++++++... +...+
T Consensus 61 ~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~~~~~~~~~ 139 (328)
T cd01943 61 SVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIRSSCIHLICSPERCASIVDD 139 (328)
T ss_pred HHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccCCCeEEEECCHHHHHHHHHH
Confidence 999999999999988 6667778999888888888887777666655566655543 56788999876642 56777
Q ss_pred HHHHHHh------cCCcEEEcCCCCccc-CCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC---H---H------HH--
Q psy8856 151 HIKKILK------LKIPFIFDPGQSLSM-FTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS---L---Q------KI-- 209 (312)
Q Consensus 151 ~~~~~~~------~~~~v~~D~~~~~~~-~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~---~---~------~l-- 209 (312)
+++.+++ .+..+++|+++.... ...+.+.++++++|++++|++|++.+++....+ . . .+
T Consensus 140 ~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 219 (328)
T cd01943 140 IINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSG 219 (328)
T ss_pred HHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHh
Confidence 8888887 788899999753211 123557899999999999999999999865421 1 1 11
Q ss_pred --hhcCCEEEEeeCCCceEEEec-CCceEEcCCccc---CCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchh
Q psy8856 210 --NEQVKVLIVTRGELGSDIFLN-NERKIKIPCVKA---DRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTE 283 (312)
Q Consensus 210 --~~g~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~---~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~ 283 (312)
..+.+.+|||+|++|+++++. +++.+++|++++ + ++||+||||+|+|||++++.+|+++++|+++|+++|+++
T Consensus 220 ~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~-vvDttGAGDaF~agfl~~l~~g~~~~~al~~a~a~Aa~~ 298 (328)
T cd01943 220 ILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTK-VVDPTGGGNSFLGGFAAGLALTKSIDEACIYGSVAASFA 298 (328)
T ss_pred hhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCc-ccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 237899999999999999883 277889999887 5 999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCChHHH
Q psy8856 284 ISHQGGQKHCPSLSEI 299 (312)
Q Consensus 284 ~~~~g~~~~~~~~~ev 299 (312)
+++.|.. ..+.+|-
T Consensus 299 v~~~G~~--~~~~~~~ 312 (328)
T cd01943 299 IEQVGLP--RLTKVEG 312 (328)
T ss_pred HccCCCC--cccCCCc
Confidence 9999965 4455433
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=1.4e-37 Score=273.06 Aligned_cols=265 Identities=18% Similarity=0.195 Sum_probs=213.4
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLK 79 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~ 79 (312)
|...++|++++|++..++ ++|. +...+.......+||.+.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~~~~~~~~~~~D~~~~~~-~~~~----------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D~g~~i~~ 69 (289)
T cd01164 1 MIYTVTLNPAIDLTIELD-QLQP----------GEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGFTGDFFEA 69 (289)
T ss_pred CEEEEecChHHeEEEEcC-cccC----------CceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCchhHHHHH
Confidence 667899999999999999 7753 2344556678899999999999999999999999999999 888999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCcccc--------CCcCCceEEEECCCCh-----H
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNC--------INNADIKIAIISPDNC-----C 146 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~ 146 (312)
.|++.||++.++... .+|++.++..+.++++......+.. ++.+.+ ..+++++++++++..+ +
T Consensus 70 ~l~~~gi~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 145 (289)
T cd01164 70 LLKEEGIPDDFVEVA--GETRINVKIKEEDGTETEINEPGPE--ISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPAD 145 (289)
T ss_pred HHHHcCCCceEEECC--CCCEEEEEEEeCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHH
Confidence 999999999988764 3466666767766665554443322 222222 1246789999986543 5
Q ss_pred HHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHh-hcccEEEeCHHHHHHhhcCCCCCHH-------HH-hhcCCEEE
Q psy8856 147 NMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKII-KKSSYIIVNEYESKLLVSKTSLSLQ-------KI-NEQVKVLI 217 (312)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll-~~~dvl~~n~~E~~~l~~~~~~~~~-------~l-~~g~~~vv 217 (312)
....+++.+++.+.++++|++.. .+.+++ +.+|++++|++|++.+++....+.+ .+ .++++.++
T Consensus 146 ~~~~~~~~~~~~~~~i~~D~~~~-------~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vi 218 (289)
T cd01164 146 FYAELVRLAREKGARVILDTSGE-------ALLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVL 218 (289)
T ss_pred HHHHHHHHHHHcCCeEEEECChH-------HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 67788888888899999999752 123444 7999999999999999986543322 22 23788999
Q ss_pred EeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccC
Q psy8856 218 VTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGG 289 (312)
Q Consensus 218 vt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~ 289 (312)
||+|++|++++.+ ++.+++++++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+++|++.|+
T Consensus 219 vt~G~~G~~~~~~-~~~~~~~~~~~~-vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 219 VSLGADGALLVTK-DGVYRASPPKVK-VVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred EecCCCCCEEEcC-CcEEEecCCCcc-ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccC
Confidence 9999999999988 788899998886 999999999999999999999999999999999999999999885
No 38
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=3e-37 Score=273.38 Aligned_cols=282 Identities=16% Similarity=0.170 Sum_probs=220.3
Q ss_pred EeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHHHH
Q psy8856 3 SLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLKHL 81 (312)
Q Consensus 3 i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~l 81 (312)
+.+.=|+++|....++ ++|. +...+..+....+||++.|+|.+|++||.++.++|.+|++ |+.+++.|
T Consensus 2 ~~~~~~p~~d~~~~~~-~~~~----------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~~G~~i~~~l 70 (309)
T TIGR01231 2 LTVTLNPSVDISYPLT-ALKL----------DTVNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGKLGEFIEKEL 70 (309)
T ss_pred EEEEcchHHeEEEEcC-Ceee----------CceEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecChhHHHHHHHH
Confidence 4567799999988888 6643 1133456678889999999999999999999999999988 88999999
Q ss_pred HHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccC--Cc---ccc-CCcCCceEEEECCCC-----hHHHHH
Q psy8856 82 KYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLS--YD---DNC-INNADIKIAIISPDN-----CCNMIK 150 (312)
Q Consensus 82 ~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~-~~~~~~~~~~~~~~~-----~~~~~~ 150 (312)
++.||++.++...+ .|+.++.++. ++++++...++..... .. ..+ ..+.+++++++++.. ...+..
T Consensus 71 ~~~GV~~~~~~~~~--~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 147 (309)
T TIGR01231 71 DHSDIKHAFYKISG--ETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQ 147 (309)
T ss_pred HHcCCceeEEECCC--CCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHH
Confidence 99999998876533 4555555554 5667666555542111 00 111 124678899888653 356778
Q ss_pred HHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC-CHHH----H----hhcCCEEEEeeC
Q psy8856 151 HIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSL-SLQK----I----NEQVKVLIVTRG 221 (312)
Q Consensus 151 ~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~-~~~~----l----~~g~~~vvvt~G 221 (312)
+++.+++.+.++++|+++.. ...+.+.++++|++++|++|++.+++.... +.++ + ..|.+.+++|+|
T Consensus 148 ~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G 223 (309)
T TIGR01231 148 IIERCQNKGVPVVLDCSGAT----LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLG 223 (309)
T ss_pred HHHHHHhCCCeEEEECChHH----HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccC
Confidence 88889999999999998631 122334457899999999999999985322 2221 1 237999999999
Q ss_pred CCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHH
Q psy8856 222 ELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301 (312)
Q Consensus 222 ~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~ 301 (312)
++|++++++ ++.+++|+++++ ++||+||||+|+|||++++.+|+++++++++|+++|++++++.+.. ..+.+++++
T Consensus 224 ~~G~~~~~~-~~~~~~~~~~v~-vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~~~~~~--~~~~~~~~~ 299 (309)
T TIGR01231 224 AQGAFAKHG-HTFYKVNIPTIS-VVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNAQEAQTG--HVNLNNYDD 299 (309)
T ss_pred CCceEEEeC-CeeEEeeCCccC-cCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccC--CCCHHHHHH
Confidence 999999987 778889999886 9999999999999999999999999999999999999999998887 678888888
Q ss_pred HHHHh
Q psy8856 302 RFKEA 306 (312)
Q Consensus 302 ~~~~~ 306 (312)
++++.
T Consensus 300 ~~~~i 304 (309)
T TIGR01231 300 LFNQI 304 (309)
T ss_pred HHhce
Confidence 87763
No 39
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=1.4e-36 Score=283.82 Aligned_cols=284 Identities=18% Similarity=0.211 Sum_probs=217.1
Q ss_pred CcEeeecceeeeeEEecC-CcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHH
Q psy8856 1 MNSLICGSLAFDNIMRFE-GKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSY 77 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i 77 (312)
++|+++|+.++|++...+ .++++ +.. ..........+.+|| +.|+|.+|++||.++.++|.+|+| |+.+
T Consensus 11 ~~ilviG~~~lD~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i 82 (473)
T PRK11316 11 AGVLVVGDVMLDRYWYGPTSRISP---EAP----VPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARAL 82 (473)
T ss_pred CcEEEECccEEeeeeecccceeCC---CCC----CCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHH
Confidence 579999999999998753 14421 011 112334556778999 799999999999999999999999 7889
Q ss_pred HHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCcccc-----CCcCCceEEEECCCC---hHHHH
Q psy8856 78 LKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNC-----INNADIKIAIISPDN---CCNMI 149 (312)
Q Consensus 78 ~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~ 149 (312)
++.|++.||+++++.. ++.+|+.++++++.++..................+ ..++.++++++++.. .+...
T Consensus 83 ~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~ 161 (473)
T PRK11316 83 SKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQ 161 (473)
T ss_pred HHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHH
Confidence 9999999999988866 56688888887775443222111111111122221 114678888887532 25567
Q ss_pred HHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC------HHHHh--hcCCEEEEeeC
Q psy8856 150 KHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS------LQKIN--EQVKVLIVTRG 221 (312)
Q Consensus 150 ~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~------~~~l~--~g~~~vvvt~G 221 (312)
++++.+++.+.++++||+... ...++.+|++++|++|++.+++..... .+.+. .+++.++||.|
T Consensus 162 ~~~~~~k~~g~~vv~Dp~~~~--------~~~~~~~dil~pN~~Ea~~l~g~~~~~~~~~~~~~~l~~~~g~~~vvVT~G 233 (473)
T PRK11316 162 AMIQLARKAGVPVLIDPKGTD--------FERYRGATLLTPNLSEFEAVVGKCKDEAELVEKGMKLIADYDLSALLVTRS 233 (473)
T ss_pred HHHHHHHhcCCeEEEeCCCCC--------ccccCCCeEECcCHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 788888889999999997532 134578999999999999999852211 11222 27899999999
Q ss_pred CCceEEEecCCc-eEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHH
Q psy8856 222 ELGSDIFLNNER-KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEID 300 (312)
Q Consensus 222 ~~G~~~~~~~~~-~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~ 300 (312)
.+|++++++ ++ .+++|+++++ ++||+||||+|.|||++++++|+++++|+++|+++|++++++.|+. .++.++++
T Consensus 234 ~~G~~~~~~-~~~~~~~~~~~v~-vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a~Aa~~v~~~G~~--~~~~~~l~ 309 (473)
T PRK11316 234 EQGMTLLQP-GKAPLHLPTQARE-VYDVTGAGDTVISVLAAALAAGNSLEEACALANAAAGVVVGKLGTS--TVSPIELE 309 (473)
T ss_pred CCCcEEEec-CCceEEecCcCCC-CCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccCCCc--cCCHHHHH
Confidence 999988887 55 5889998886 9999999999999999999999999999999999999999999987 57899999
Q ss_pred HHHHH
Q psy8856 301 QRFKE 305 (312)
Q Consensus 301 ~~~~~ 305 (312)
++++.
T Consensus 310 ~~l~~ 314 (473)
T PRK11316 310 NALRG 314 (473)
T ss_pred HHHhc
Confidence 98884
No 40
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=9e-37 Score=267.78 Aligned_cols=268 Identities=19% Similarity=0.231 Sum_probs=207.9
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLK 79 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~ 79 (312)
.|+++|++++|.+..++ ++|. |+... . ......+||++.|+|.+|++||.++.++|.+|+| ++.+++
T Consensus 1 ~v~~~G~~~~D~~~~~~-~~~~---~~~~~------~-~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~ 69 (288)
T cd01941 1 EIVVIGAANIDLRGKVS-GSLV---PGTSN------P-GHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILE 69 (288)
T ss_pred CeEEEEeEEEeeeeccc-Cccc---cCCCC------C-eeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHH
Confidence 48999999999999888 5542 22211 1 1236779999999999999999999999999998 788999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEE-eCCccccCCcccc----CCcCCceEEEECCCC-hHHHHHHHH
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIF-HPGAMQLSYDDNC----INNADIKIAIISPDN-CCNMIKHIK 153 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 153 (312)
.|++.||+++.+. .++.+|+.+++.++.++++.+.. .++....+....+ ..+..+++++++... ++....+++
T Consensus 70 ~L~~~gI~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~ 148 (288)
T cd01941 70 ESEKAGLNVRGIV-FEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPIVVDANLPEEALEYLLA 148 (288)
T ss_pred HHHHcCCccceee-eCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHH
Confidence 9999999999887 56678999999988888877633 2222222222111 125678888886543 456777888
Q ss_pred HHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH-------HHHh-hcCCEEEEeeCCCce
Q psy8856 154 KILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL-------QKIN-EQVKVLIVTRGELGS 225 (312)
Q Consensus 154 ~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~-------~~l~-~g~~~vvvt~G~~G~ 225 (312)
.+++.+.++++|++.....+ .+.++++++|++++|++|++.+++....+. +.+. .+++.+++|+|++|+
T Consensus 149 ~a~~~~~~v~~d~~~~~~~~---~~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga 225 (288)
T cd01941 149 LAAKHGVPVAFEPTSAPKLK---KLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGV 225 (288)
T ss_pred hhhhcCCcEEEEccchHHhc---cchhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcE
Confidence 88888999999987532111 122588999999999999999988643221 1122 389999999999999
Q ss_pred EEEec--CCceEEcCC-cccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhee
Q psy8856 226 DIFLN--NERKIKIPC-VKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEIS 285 (312)
Q Consensus 226 ~~~~~--~~~~~~~~~-~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~ 285 (312)
+++++ ++..+++|+ ++.+ ++||+||||+|.|||++++++|+++++|+++|+++|+.+|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 226 LLSSREGGVETKLFPAPQPET-VVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred EEEecCCCceeEEecCCCCcc-ceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 99885 356788898 4665 99999999999999999999999999999999999999886
No 41
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.1e-36 Score=266.94 Aligned_cols=264 Identities=19% Similarity=0.238 Sum_probs=213.1
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecChHHHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHL 81 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l 81 (312)
+|+++|+.++|.+..+.+ . ....+||++.|+|.+|++||.++.++|.+|+|..
T Consensus 13 ~vlvvG~~~~D~i~~~g~-~--------------------~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~------ 65 (335)
T PLN02630 13 RVLIVGNYCHDVLIQNGS-V--------------------TAESLGGAASFISNVLDALSVECELVSKVGPDFL------ 65 (335)
T ss_pred CEEEEeeeeeeEEEeCCc-E--------------------EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc------
Confidence 699999999999977541 0 2567899999999999999999999999999942
Q ss_pred HHcCCccceeeecCCcccceEEEEEec-----CCCeeEEEeCCccccCCccccCC--cCCceEEEECCCC-hHHHHHHHH
Q psy8856 82 KYLGISNKYIQKINSMFTAQCFIVTDV-----NNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPDN-CCNMIKHIK 153 (312)
Q Consensus 82 ~~~gi~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 153 (312)
.+|+...+.. ++.+|+.+++++++ ++++.+....+++..++++++.. ++....+++.... ++....+++
T Consensus 66 --~~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~~~~~~~~~~l~~ei~~e~~~~~~~ 142 (335)
T PLN02630 66 --YQVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDMRYEFGMAVGVAGEILPETLERMVE 142 (335)
T ss_pred --ccccccceec-CCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHHHhcccceeeecCCCcHHHHHHHHH
Confidence 3666544433 66789998888876 45667777778877787777654 4556677776554 567777788
Q ss_pred HHHh-----cCCcEEEcCCCC-cccCCH--HHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHHhhcCCEEEEeeCCCce
Q psy8856 154 KILK-----LKIPFIFDPGQS-LSMFTK--EELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGS 225 (312)
Q Consensus 154 ~~~~-----~~~~v~~D~~~~-~~~~~~--~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l~~g~~~vvvt~G~~G~ 225 (312)
.++. ++..+++|+.+. ...|.. ..+.++++++|++++|++|++.+ +.+++. ....++||+|++|+
T Consensus 143 ~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~~iDil~~ne~Ea~~l------~~~~~~-~~~~vvvt~G~~G~ 215 (335)
T PLN02630 143 ICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPRIGFLKASSEEALFI------DVEEVR-QKCCVIVTNGKKGC 215 (335)
T ss_pred HhhhheeccCceEEecCCcccccccchhhHHHHHHHHHhCCEEEecHHHHhhc------CHHHHc-cCCEEEEEECCCce
Confidence 7776 788999999873 344432 23668999999999999999886 223333 23489999999999
Q ss_pred EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHHH
Q psy8856 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~~ 305 (312)
+++++ ++.+++|+++++ ++|||||||+|+|||++++.+|+++++|+++|+++|++++++.|.. ..+.+++++++++
T Consensus 216 ~~~~~-~~~~~~~~~~v~-~vDttGAGDaF~agfi~~l~~g~~~~~a~~~A~a~aa~~v~~~G~~--~~~~~~l~~~~~~ 291 (335)
T PLN02630 216 RIYWK-DGEMRVPPFPAI-QVDPTGAGDSFLGGFVAGLVQGLAVPDAALLGNYFGSLAVEQVGIP--KFDLRQLQRVKDE 291 (335)
T ss_pred EEEEC-CeeEEeCCCCCC-CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcCCCC--CCCHHHHHHHhhc
Confidence 99998 788899999986 9999999999999999999999999999999999999999999976 6799999988776
Q ss_pred h
Q psy8856 306 A 306 (312)
Q Consensus 306 ~ 306 (312)
.
T Consensus 292 i 292 (335)
T PLN02630 292 V 292 (335)
T ss_pred E
Confidence 4
No 42
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-36 Score=255.05 Aligned_cols=284 Identities=20% Similarity=0.230 Sum_probs=233.0
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHH
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLK 79 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~ 79 (312)
|-+.+.=|+.+|.+..++ .+- .+...+.......+||.++|||..|+.||.++...|++|.+ ++.+.+
T Consensus 1 mI~TvTLNPaiD~~~~l~-~l~----------~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~ 69 (310)
T COG1105 1 MIYTVTLNPALDYTVFLD-ELE----------LGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGFTGEFFVA 69 (310)
T ss_pred CeEEEecChhHhheeecc-ccc----------ccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCccHHHHHH
Confidence 667788899999999998 651 23344566678899999999999999999999999999999 999999
Q ss_pred HHHHcCCccceeeecCCcccceEEEEEecCC-CeeEEEeCCccccCCccccCC--------cCCceEEEECCCCh-----
Q psy8856 80 HLKYLGISNKYIQKINSMFTAQCFIVTDVNN-NQITIFHPGAMQLSYDDNCIN--------NADIKIAIISPDNC----- 145 (312)
Q Consensus 80 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~----- 145 (312)
.|++.||...++.+.. .|..++-+.++++ ..+....+++. ++...+.. +...+++.++++.|
T Consensus 70 ~l~~~gi~~~fv~v~g--~TRinvki~~~~~~~~Tein~~Gp~--is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~ 145 (310)
T COG1105 70 LLKDEGIPDAFVEVKG--DTRINVKILDEEDGEETEINFPGPE--ISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPP 145 (310)
T ss_pred HHHhcCCCceEEEccC--CCeeeEEEEecCCCcEEEecCCCCC--CCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCH
Confidence 9999999999887643 6777777777643 34443344442 33333322 56778888987643
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHh-hcccEEEeCHHHHHHhhcCCCCCHHH--------HhhcCCEE
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKII-KKSSYIIVNEYESKLLVSKTSLSLQK--------INEQVKVL 216 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll-~~~dvl~~n~~E~~~l~~~~~~~~~~--------l~~g~~~v 216 (312)
+.+.++++.+++++.+|++|.+. +.+.+.+ ....+++||.+|++.+++....+.++ +.+|+++|
T Consensus 146 d~y~~li~~~~~~g~~vilD~Sg-------~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~V 218 (310)
T COG1105 146 DAYAELIRILRQQGAKVILDTSG-------EALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENV 218 (310)
T ss_pred HHHHHHHHHHHhcCCeEEEECCh-------HHHHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEE
Confidence 88899999999999999999974 4454544 36889999999999999987664322 23499999
Q ss_pred EEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCCh
Q psy8856 217 IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL 296 (312)
Q Consensus 217 vvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~ 296 (312)
+||+|.+|+++.++ ++.|++.+|+++ +++|+||||++.|||++++.+++++++++++|+++++.++++.+.. .++.
T Consensus 219 iVSlG~~Gal~~~~-~~~~~a~~p~~~-vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~~~~~~~~--~~~~ 294 (310)
T COG1105 219 IVSLGADGALLVTA-EGVYFASPPKVQ-VVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQKGTG--IPDL 294 (310)
T ss_pred EEEecCcccEEEcc-CCeEEEeCCCcc-eecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCC--CCCH
Confidence 99999999999999 999999988886 9999999999999999999999999999999999999999999988 7899
Q ss_pred HHHHHHHHHhhccc
Q psy8856 297 SEIDQRFKEAFGYR 310 (312)
Q Consensus 297 ~ev~~~~~~~~~~~ 310 (312)
++++++.++..-++
T Consensus 295 ~~~~~~~~~v~v~~ 308 (310)
T COG1105 295 DQLKKIYAQVTVEK 308 (310)
T ss_pred HHHHHHhhheEEEe
Confidence 98888887765443
No 43
>PLN02548 adenosine kinase
Probab=100.00 E-value=1.6e-36 Score=271.36 Aligned_cols=283 Identities=17% Similarity=0.221 Sum_probs=211.9
Q ss_pred ecceeeeeEEecCCcc------c--C--CCCccccccceeeeecCCcccccCCchHHHHHHH---HHhCCCceEEEEeec
Q psy8856 6 CGSLAFDNIMRFEGKF------S--N--SLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNL---KLLNGNPLIVSILGK 72 (312)
Q Consensus 6 ~G~~~~D~~~~~~~~~------~--~--~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l---~~lG~~~~~~~~vG~ 72 (312)
+||+.+|++..+++.+ + . ......++..+...........+||++.|++..+ +++|.++.++|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 5999999998876433 1 0 0111223444556666777888999999986544 566999999999999
Q ss_pred C--hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccC------CcCCceEEEECCC-
Q psy8856 73 D--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCI------NNADIKIAIISPD- 143 (312)
Q Consensus 73 d--~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~- 143 (312)
| |+.+++.|+++||+++++.. .+.+|+.+++.++ ++++.+..+.+....++.+.+. .+...+++++++.
T Consensus 81 D~~g~~i~~~L~~~gVd~~~~~~-~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 158 (332)
T PLN02548 81 DKFGEEMKKCATAAGVNVHYYED-ESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFF 158 (332)
T ss_pred ChhHHHHHHHHHHcCCceeeecc-CCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEE
Confidence 9 78899999999999988754 5668999888876 5666665555443333333221 2457788887742
Q ss_pred ---ChHHHHHHHHHHHhcCCcEEEcCCCCccc-CCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC---CHH----HHhh-
Q psy8856 144 ---NCCNMIKHIKKILKLKIPFIFDPGQSLSM-FTKEELIKIIKKSSYIIVNEYESKLLVSKTSL---SLQ----KINE- 211 (312)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~v~~D~~~~~~~-~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~---~~~----~l~~- 211 (312)
..+....+++.+++++.++.+|++..... ...+.++++++++|++++|++|++.+++.... +.+ .+.+
T Consensus 159 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~ 238 (332)
T PLN02548 159 LTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISAL 238 (332)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHh
Confidence 34666777888888898888887642111 01345788999999999999999999875332 222 2221
Q ss_pred ------cCCEEEEeeCCCceEEEecCCceEEcCCccc--CCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchh
Q psy8856 212 ------QVKVLIVTRGELGSDIFLNNERKIKIPCVKA--DRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTE 283 (312)
Q Consensus 212 ------g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~--~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~ 283 (312)
+++.++||+|++|++++++ ++.+++|++++ .+++||+||||+|.|||++++.+|+++++|+++|+++|+++
T Consensus 239 ~~~~g~~~~~vvvT~G~~G~~~~~~-~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~ 317 (332)
T PLN02548 239 PKASGTHKRTVVITQGADPTVVAED-GKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVI 317 (332)
T ss_pred hhhccccCCEEEEEeCCCcEEEEEC-CeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999987 88888876422 24899999999999999999999999999999999999999
Q ss_pred eeeccCCC
Q psy8856 284 ISHQGGQK 291 (312)
Q Consensus 284 ~~~~g~~~ 291 (312)
|++.|+..
T Consensus 318 v~~~G~~~ 325 (332)
T PLN02548 318 IQRSGCTY 325 (332)
T ss_pred HhccCCCC
Confidence 99999874
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.6e-36 Score=260.12 Aligned_cols=265 Identities=20% Similarity=0.221 Sum_probs=198.1
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLKH 80 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~ 80 (312)
.|+++|+.++|.+....+ .....+||++.|+|.++++|| ++.++|.+|+| +..+++.
T Consensus 1 ~v~~~G~~~~D~~~~~~~---------------------~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D~g~~~~~~ 58 (277)
T cd01946 1 SLLVVGSVAFDAIETPFG---------------------KVDKALGGSATYFSLSASYFT-DVRLVGVVGEDFPEEDYKL 58 (277)
T ss_pred CeEEEEEeeeeeecCCCc---------------------eeeeccCchHHHHHHHHHHhc-cceeEEeccCcChHHHHHH
Confidence 489999999999932220 124668999999999999998 69999999999 8889999
Q ss_pred HHHcCCccceeeecCCcccceEEEEE--ecCCCeeEEEeCCccccCCccccCCcCCceEEEECCCChHHHHHHHHHHHhc
Q psy8856 81 LKYLGISNKYIQKINSMFTAQCFIVT--DVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKL 158 (312)
Q Consensus 81 l~~~gi~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (312)
|++.||+++++...++.+|....... +.+++.......+....+.+.....+.+++++++++..++...++++.+++.
T Consensus 59 l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 138 (277)
T cd01946 59 LNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQLPEHYKDSEFVFLGNIAPELQREVLEQVKDP 138 (277)
T ss_pred HHhccCcceeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCCChHHhhcCCEEEECCCCHHHHHHHHHHHHhC
Confidence 99999999999876655552211111 1111211111111111222211122467899999887777778888888776
Q ss_pred CCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC--HHHHhh-cCCEEEEeeCCCceEEEecCCceE
Q psy8856 159 KIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKINE-QVKVLIVTRGELGSDIFLNNERKI 235 (312)
Q Consensus 159 ~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~--~~~l~~-g~~~vvvt~G~~G~~~~~~~~~~~ 235 (312)
.++++|+.........+.++++++++|++++|++|++.+++..... .+.+.+ +++.+++|+|.+|++++++ ++.+
T Consensus 139 -~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~-~~~~ 216 (277)
T cd01946 139 -KLVVMDTMNFWISIKPEKLKKVLAKVDVVIINDGEARQLTGAANLVKAARLILAMGPKALIIKRGEYGALLFTD-DGYF 216 (277)
T ss_pred -CEEEEccHHHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhCCchHHHHHHHHHHcCCCEEEEecCCCcEEEEEC-CceE
Confidence 8899998432111134667889999999999999999998753221 122333 8999999999999999988 8888
Q ss_pred EcCCcccCCcCCCCCchhhhHHHHHHHHHcCC-----CHHHHHHHHHHHhchheeeccCC
Q psy8856 236 KIPCVKADRIVDPTGCGDAFRSGVLFGIINNL-----DWYTTGRLSSLMGSTEISHQGGQ 290 (312)
Q Consensus 236 ~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~-----~~~~a~~~a~a~aa~~~~~~g~~ 290 (312)
++|++++++++||+||||+|.|||++++.+|+ ++++|+++|+++|+++|++.|+.
T Consensus 217 ~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 217 AAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSAMASFCVEDFGTK 276 (277)
T ss_pred EcCCcccCccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHHHHhhhhhhcCCC
Confidence 99998875588999999999999999999874 69999999999999999999975
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.5e-35 Score=255.47 Aligned_cols=250 Identities=23% Similarity=0.230 Sum_probs=190.2
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLKH 80 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~ 80 (312)
||+++|++++|++...+ + ....+||++.|+|.+|++||.++.++|.+|+| ... ++.
T Consensus 1 ~il~iG~~~iD~~~~~~-~---------------------~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~-~~~ 57 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG-S---------------------GVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK-WSD 57 (254)
T ss_pred CeEEEcceeEEEEecCC-c---------------------eEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH-HHH
Confidence 79999999999996543 1 25778999999999999999999999999999 444 788
Q ss_pred HHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCCcCCceEEEECCCChHHHHHHHHHHHhcCC
Q psy8856 81 LKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKI 160 (312)
Q Consensus 81 l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (312)
|++.||++..+ ....|+.+++.++.++++.+....+........ ...+.+++++++++..++....+.+. ..
T Consensus 58 l~~~gv~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 129 (254)
T cd01937 58 LFDNGIEVISL---LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES-PLSTITAEIVILGPVPEEISPSLFRK----FA 129 (254)
T ss_pred HHHCCcEEEEe---cCCCeEEEEEEecCCCCeeeeeccccCCccccc-ccccCcccEEEECCCcchhcHHHHhh----hh
Confidence 99999986432 334677777777766677666555543322221 23356889999987654444444333 37
Q ss_pred cEEEcCCCCcccCCH--HHHHHHhhcccEEEeCHHHHHHhhcCCCCCHHHHhh-cCCEEEEeeCCCceEEEecCCceEEc
Q psy8856 161 PFIFDPGQSLSMFTK--EELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINE-QVKVLIVTRGELGSDIFLNNERKIKI 237 (312)
Q Consensus 161 ~v~~D~~~~~~~~~~--~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l~~-g~~~vvvt~G~~G~~~~~~~~~~~~~ 237 (312)
++++|+++....|.. ..++++++++|++++|++|++.+.... .-.+.+.+ +++.++||.|.+|++++++ ++.+++
T Consensus 130 ~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~~~~~-~~~~~l~~~g~~~vvvt~g~~g~~~~~~-~~~~~~ 207 (254)
T cd01937 130 FISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVISTPT-ELARLIKETGVKEIIVTDGEEGGYIFDG-NGKYTI 207 (254)
T ss_pred heeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhcCCHH-HHHHHHHHcCCCEEEEeeCCcceEEEEC-CccEEc
Confidence 899999864322221 225689999999999999999831100 01122333 7899999999999999998 778899
Q ss_pred CCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhee
Q psy8856 238 PCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEIS 285 (312)
Q Consensus 238 ~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~ 285 (312)
|+++++ ++||+||||+|.|||++++.+|+++++|+++|+++|+++|+
T Consensus 208 ~~~~~~-~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 208 PASKKD-VVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred cccCce-eccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 999876 99999999999999999999999999999999999999874
No 46
>KOG2854|consensus
Probab=100.00 E-value=1.9e-33 Score=236.99 Aligned_cols=285 Identities=20% Similarity=0.225 Sum_probs=225.0
Q ss_pred EeeecceeeeeEEecCCcc--------cCCCCccc--cccceeeeecCCcccccCCchHHHHHHHHHhCC---CceEEEE
Q psy8856 3 SLICGSLAFDNIMRFEGKF--------SNSLLPDQ--LDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNG---NPLIVSI 69 (312)
Q Consensus 3 i~~~G~~~~D~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~---~~~~~~~ 69 (312)
.+.+||+++|+...+|+.| ...++.+. .....+..........+||++.|.++.+++++- .+.++|.
T Consensus 9 l~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~Gs 88 (343)
T KOG2854|consen 9 LVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGS 88 (343)
T ss_pred eeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEee
Confidence 4678999999999998654 11222221 112223333445577899999999999999986 8999999
Q ss_pred eecC--hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC------cCCceEEEEC
Q psy8856 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN------NADIKIAIIS 141 (312)
Q Consensus 70 vG~d--~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 141 (312)
+|.| |+.+.+.+++.||+.++... +..+|++|.+++++++ |+++.+.++...+..+++.. ++++.++++.
T Consensus 89 vG~Dk~ge~l~~~~~~aGv~~~yq~~-~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lveka~v~yv~ 166 (343)
T KOG2854|consen 89 VGKDKFGELLKSKARAAGVNVHYQVK-EDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVEKAKVFYVA 166 (343)
T ss_pred ccCchHHHHHHHHHHhcCceEEEEec-cCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhhheeEEEEE
Confidence 9999 77889999999999987655 5569999999999877 77777877776666666533 4677888777
Q ss_pred CC----ChHHHHHHHHHHHhcCCcEEEcCCC-CcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCC---CHHHHh---
Q psy8856 142 PD----NCCNMIKHIKKILKLKIPFIFDPGQ-SLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSL---SLQKIN--- 210 (312)
Q Consensus 142 ~~----~~~~~~~~~~~~~~~~~~v~~D~~~-~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~---~~~~l~--- 210 (312)
+. +++.+..+.+.+.+.+.+..++.+. .......+.+.++++++|+++.|++|++.+++..+. +..++.
T Consensus 167 Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~ 246 (343)
T KOG2854|consen 167 GFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKL 246 (343)
T ss_pred EEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHh
Confidence 53 4688888888888888877777764 333445678889999999999999999999876543 222221
Q ss_pred --------hcCCEEEEeeCCCceEEEecCCceEEcCC--cccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Q psy8856 211 --------EQVKVLIVTRGELGSDIFLNNERKIKIPC--VKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMG 280 (312)
Q Consensus 211 --------~g~~~vvvt~G~~G~~~~~~~~~~~~~~~--~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~a 280 (312)
.+.+.++||.|.++.....+ ++.+..|. .+.++++||+||||+|.+||++++.+|++++++.+.|+.+|
T Consensus 247 ~~~~k~~~~~~r~vvit~g~~~~i~~~~-~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~~aa 325 (343)
T KOG2854|consen 247 SALPKVNGTRPRTVVITQGPDPVIVAED-GKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGSYAA 325 (343)
T ss_pred hccccccccccceEEEccCCCceEEecC-CceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 26788999999999999888 77665554 45668999999999999999999999999999999999999
Q ss_pred chheeeccCC
Q psy8856 281 STEISHQGGQ 290 (312)
Q Consensus 281 a~~~~~~g~~ 290 (312)
+..++..|..
T Consensus 326 ~~vi~~~G~~ 335 (343)
T KOG2854|consen 326 SHVIRRVGCT 335 (343)
T ss_pred hheeeccCCC
Confidence 9999999987
No 47
>KOG2947|consensus
Probab=100.00 E-value=1.4e-31 Score=215.29 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=219.6
Q ss_pred EeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHHHHH
Q psy8856 3 SLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKH 80 (312)
Q Consensus 3 i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i~~~ 80 (312)
|+++|...+|.+..+| +.|- + ....+..+....-||.+.|++..|+.||.++.|+|.+... ++.+++.
T Consensus 7 VLcVG~~~lD~iTivd-~~~f---e------~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLdd 76 (308)
T KOG2947|consen 7 VLCVGCTVLDVITIVD-KYPF---E------DSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDD 76 (308)
T ss_pred EEEeccEEEEEEEecc-CCCC---C------ccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHH
Confidence 8999999999999998 6642 1 3344555667788999999999999999999999999987 7889999
Q ss_pred HHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC--cCCceEEEECCCChHHHHHHHHHHHh-
Q psy8856 81 LKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN--NADIKIAIISPDNCCNMIKHIKKILK- 157 (312)
Q Consensus 81 l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (312)
|++.||+++++......+....+|.....+++++.......+..+.+++.. ++.+.|+++....+....+++.....
T Consensus 77 l~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~WihfE~Rnp~etlkM~~~I~~~ 156 (308)
T KOG2947|consen 77 LRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYGWIHFEARNPSETLKMLQRIDAH 156 (308)
T ss_pred HHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceeeeEEEecCChHHHHHHHHHHHHh
Confidence 999999999998877766666666666677788877777778888888876 47999999998887666666655422
Q ss_pred -------cCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC--HHHHhh------cCCEEEEeeCC
Q psy8856 158 -------LKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKINE------QVKVLIVTRGE 222 (312)
Q Consensus 158 -------~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~--~~~l~~------g~~~vvvt~G~ 222 (312)
+++.+++|+... .+++..++..+|+++++++=++.+ |..... .+.+.. .-..+|+-++.
T Consensus 157 N~r~pe~qrI~vSvd~en~-----req~~~l~am~DyVf~sK~~a~~~-gfks~rea~~~l~~r~~~~~pkpv~I~~w~~ 230 (308)
T KOG2947|consen 157 NTRQPEEQRIRVSVDVENP-----REQLFQLFAMCDYVFVSKDVAKHL-GFKSPREACEGLYGRVPKGKPKPVLICPWAS 230 (308)
T ss_pred hcCCCccceEEEEEEecCc-----HHHHHHHhhcccEEEEEHHHHhhh-ccCCHHHHHHHHHhhcccCCCCcEEEecccc
Confidence 457788888643 577889999999999999766664 333221 122321 23567788999
Q ss_pred CceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHH-HHcCCCHHHHHHHHHHHhchheeeccCC
Q psy8856 223 LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFG-IINNLDWYTTGRLSSLMGSTEISHQGGQ 290 (312)
Q Consensus 223 ~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~-l~~g~~~~~a~~~a~a~aa~~~~~~g~~ 290 (312)
+|+-....+|+.+++++++..++||+.|+||+|.|||||+ +.+++++.||++||+++|+.++.-.|.-
T Consensus 231 eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rvas~Kl~g~Gfd 299 (308)
T KOG2947|consen 231 EGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRVASKKLGGQGFD 299 (308)
T ss_pred ccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHhhhccccccccc
Confidence 9998887768889999998888999999999999999999 6789999999999999999999988753
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.6e-30 Score=223.86 Aligned_cols=278 Identities=20% Similarity=0.267 Sum_probs=220.3
Q ss_pred cEeeecceeeeeEEecCC-cc-cCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC--hHHH
Q psy8856 2 NSLICGSLAFDNIMRFEG-KF-SNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSY 77 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d--~~~i 77 (312)
+|+++|..++|++...+. |+ |+... ....+......+|| +.|||.+++.||.++.++|.+|.| |..+
T Consensus 12 kVLVvGDvmLDrY~~G~~~RISPEAPV--------PVv~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~L 82 (467)
T COG2870 12 KVLVVGDVMLDRYWYGKVSRISPEAPV--------PVVKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKAL 82 (467)
T ss_pred cEEEEcceeeeeeccccccccCCCCCC--------ceEEeccccccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHHH
Confidence 699999999999877542 33 22211 23445666788898 899999999999999999999999 8889
Q ss_pred HHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCcccc----C-CcCCceEEEECCCCh---HHHH
Q psy8856 78 LKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNC----I-NNADIKIAIISPDNC---CNMI 149 (312)
Q Consensus 78 ~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~---~~~~ 149 (312)
...|...+|+.. +...++.+|..-..++..+.+.....+...........+ . .+.+++.+++|+... ....
T Consensus 83 ~~~l~~~~i~~~-l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q 161 (467)
T COG2870 83 IELLKANGIDSD-LLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQ 161 (467)
T ss_pred HHHHHhcCcccc-eEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchhHH
Confidence 999999999965 455577888888777776665444333221111111111 1 157889999997654 4467
Q ss_pred HHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH------HHHhh--cCCEEEEeeC
Q psy8856 150 KHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL------QKINE--QVKVLIVTRG 221 (312)
Q Consensus 150 ~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~------~~l~~--g~~~vvvt~G 221 (312)
.+++.+++.+++|.+||.+.. .+.+..+.++.||..|++...|....+. ++|.. +...++||++
T Consensus 162 ~~I~~ar~~~~pVLvDPKg~D--------f~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~~~L~alLvTRs 233 (467)
T COG2870 162 KMIDLAREAGIPVLVDPKGKD--------FEKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEELDLSALLVTRS 233 (467)
T ss_pred HHHHHHHHcCCcEEECCCCcc--------hhhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHhhCcceEEEEec
Confidence 888999999999999998642 3567899999999999999999865542 12222 7889999999
Q ss_pred CCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHH
Q psy8856 222 ELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301 (312)
Q Consensus 222 ~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~ 301 (312)
++|+-++.+ ++..|+|+...+ +-|.+||||+-+|.+.++++.|.+++||..+||++|+..+.+.|+. ..|.+|+..
T Consensus 234 E~GMtL~~~-~~~~h~pt~AkE-VyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~AagiVVgKlGTa--tvs~~EL~n 309 (467)
T COG2870 234 EKGMTLFQE-GKPLHFPARAKE-VYDVTGAGDTVIAVLAAALAAGASLEEACELANAAAGIVVGKLGTA--TVSPEELEM 309 (467)
T ss_pred cCCceeecC-Ccccccchhhee-eeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhhcceEEeeccce--eecHHHHHh
Confidence 999999998 777999998765 9999999999999999999999999999999999999999999999 789999977
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=1.9e-28 Score=202.83 Aligned_cols=185 Identities=26% Similarity=0.407 Sum_probs=155.0
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecChHHHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHL 81 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l 81 (312)
+|+++|++++|.+..++ ++|. + +.+.+.......+||.+.|+|.+|++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~-~~~~---~------~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVD-ALPL---P------GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG------------- 57 (196)
T ss_pred CEEEEccceEEEEEEec-cCCC---C------CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-------------
Confidence 68999999999999998 6654 2 33455666788999999999999999999999999
Q ss_pred HHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCCcCCceEEEECCCCh--HHHHHHHHHHHhcC
Q psy8856 82 KYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNC--CNMIKHIKKILKLK 159 (312)
Q Consensus 82 ~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (312)
+++++++...+ +...++++.+++.+
T Consensus 58 -----------------------------------------------------~~~v~i~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd00287 58 -----------------------------------------------------ADAVVISGLSPAPEAVLDALEEARRRG 84 (196)
T ss_pred -----------------------------------------------------ccEEEEecccCcHHHHHHHHHHHHHcC
Confidence 57777776654 67888898999899
Q ss_pred CcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH-------HHH-hhcCCEEEEeeCCCceEEEe-c
Q psy8856 160 IPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL-------QKI-NEQVKVLIVTRGELGSDIFL-N 230 (312)
Q Consensus 160 ~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~-------~~l-~~g~~~vvvt~G~~G~~~~~-~ 230 (312)
.++++|+++....+....++++++++|++++|++|++.+++....+. +.+ ..+++.+++|+|++|+++++ +
T Consensus 85 ~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~ 164 (196)
T cd00287 85 VPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRG 164 (196)
T ss_pred CeEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecC
Confidence 99999999876655544577899999999999999999998755432 122 23899999999999999998 6
Q ss_pred CCceEEcCCcccCCcCCCCCchhhhHHHHHHHHH
Q psy8856 231 NERKIKIPCVKADRIVDPTGCGDAFRSGVLFGII 264 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~ 264 (312)
++.+++|+++.+ ++||+||||+|+|||++++.
T Consensus 165 -~~~~~~~~~~~~-~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 165 -GTEVHVPAFPVK-VVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred -CceEEcCCccCC-cccCCCchHHHHHHHHHHhC
Confidence 788899988875 99999999999999999873
No 50
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.79 E-value=5.9e-18 Score=145.63 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=134.4
Q ss_pred CceEEEEeecC---hHHHHH---HHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCCcC--C
Q psy8856 63 NPLIVSILGKD---GSSYLK---HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNA--D 134 (312)
Q Consensus 63 ~~~~~~~vG~d---~~~i~~---~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 134 (312)
++.+++.-|.| |.-+.. .+..+|+ .+..+.++....+..|.... .... ..+. ..+..+. .
T Consensus 3 ~~~vl~iag~d~~ggaG~~aD~~~~~~~~~--------~~~~~~t~~t~~~~~G~~v~--~~~~-~~l~-~~l~~l~~~~ 70 (253)
T PRK12413 3 TNYILAISGNDIFSGGGLHADLATYTRNGL--------HGFVAVTCLTAMTEKGFEVF--PVDK-EIFQ-QQLDSLKDVP 70 (253)
T ss_pred CCeEEEEeeeCCCCHHHHHHHHHHHHHcCC--------ccCeeeEEEecccCCceEEE--ECCH-HHHH-HHHHHhhCCC
Confidence 45678899998 444544 4444443 23455566666666664322 2111 1110 1111111 1
Q ss_pred ceEEEECCC-ChHHHHHHHHHHH-hcCCcEEEcCCCCcccCC-------HHHHHHHhhcccEEEeCHHHHHHhhcCCCCC
Q psy8856 135 IKIAIISPD-NCCNMIKHIKKIL-KLKIPFIFDPGQSLSMFT-------KEELIKIIKKSSYIIVNEYESKLLVSKTSLS 205 (312)
Q Consensus 135 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~~v~~D~~~~~~~~~-------~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~ 205 (312)
+..+.+... ..+....+++.++ +.+.++++||..+...|. .+.++++++++|++++|+.|++.+++....+
T Consensus 71 ~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~ 150 (253)
T PRK12413 71 FSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKT 150 (253)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCC
Confidence 222222211 2344444555554 468899999998766652 1235567899999999999999999975433
Q ss_pred HH-------HHh-hcCCEEEEeeCCCce-----EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHH
Q psy8856 206 LQ-------KIN-EQVKVLIVTRGELGS-----DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTT 272 (312)
Q Consensus 206 ~~-------~l~-~g~~~vvvt~G~~G~-----~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a 272 (312)
.+ .+. .|++.|+||.|++|. .++.. ++..+.++++.. .+|++||||+|.|+|++++.+|+++++|
T Consensus 151 ~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~GaGDaf~a~~~~~l~~g~~l~ea 228 (253)
T PRK12413 151 LEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYD-GKEFVILESPVL-EKNNIGAGCTFASSIASQLVKGKSPLEA 228 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEc-CCEEEEEeeccc-CCCCCChHHHHHHHHHHHHHcCCCHHHH
Confidence 22 222 289999999998642 23344 444555666665 7899999999999999999999999999
Q ss_pred HHHHHHHhchheee
Q psy8856 273 GRLSSLMGSTEISH 286 (312)
Q Consensus 273 ~~~a~a~aa~~~~~ 286 (312)
+++|.++....+++
T Consensus 229 ~~~A~~~~~~~l~~ 242 (253)
T PRK12413 229 VKNSKDFVYQAIQQ 242 (253)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988777665
No 51
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.77 E-value=5.6e-17 Score=140.49 Aligned_cols=211 Identities=15% Similarity=0.116 Sum_probs=136.9
Q ss_pred eEEEEeecC---hHHH---HHHHHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCC-cC--Cc
Q psy8856 65 LIVSILGKD---GSSY---LKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN-NA--DI 135 (312)
Q Consensus 65 ~~~~~vG~d---~~~i---~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~ 135 (312)
.+++.-|.| |.-+ ++-++..|+... ...++++..+..+.......+.....+ .+.+.. ++ .+
T Consensus 3 ~vl~iag~D~sggaGi~aD~~t~~~lg~~~~--------~v~Ta~t~q~~~~~~~~~v~~~~~~~i-~~q~~~l~~d~~~ 73 (268)
T PRK12412 3 KALTIAGSDTSGGAGIQADLKTFQELGVYGM--------TSLTTIVTMDPHNGWAHNVFPIPASTL-KPQLETTIEGVGV 73 (268)
T ss_pred eEEEEEeeCCCchHHHHHHHHHHHHcCCeec--------eeeeEEEeEcCCCCcEEEEEeCCHHHH-HHHHHHHHhCCCC
Confidence 457888888 3323 567777776532 333444444544322222222211111 111111 11 24
Q ss_pred eEEEECCC-ChHHHHHHHHHHHhcCCc-EEEcCCCCccc----CCH---HH-HHHHhhcccEEEeCHHHHHHhhcCCCCC
Q psy8856 136 KIAIISPD-NCCNMIKHIKKILKLKIP-FIFDPGQSLSM----FTK---EE-LIKIIKKSSYIIVNEYESKLLVSKTSLS 205 (312)
Q Consensus 136 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~D~~~~~~~----~~~---~~-l~~ll~~~dvl~~n~~E~~~l~~~~~~~ 205 (312)
+.+.+.-. ..+.+..+.+.+++.+.+ +++||...... ... +. .+.+++.+|++++|+.|++.|++....+
T Consensus 74 ~~ikiG~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~ 153 (268)
T PRK12412 74 DALKTGMLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINS 153 (268)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCC
Confidence 55544422 346666666677766765 99999853211 111 22 3468899999999999999999864333
Q ss_pred HH-------HHh-hcCCEEEEeeCCCce------EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHH
Q psy8856 206 LQ-------KIN-EQVKVLIVTRGELGS------DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYT 271 (312)
Q Consensus 206 ~~-------~l~-~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~ 271 (312)
.+ .+. .|++.|+||.|++|. +++.+ ++.++++.++++ .+||+|+||+|.|+|++++++|+++++
T Consensus 154 ~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~-~~~~~~~~~~v~-~~~t~GaGD~f~aa~aa~l~~g~~l~e 231 (268)
T PRK12412 154 LEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDG-ETFDLLESEKID-TTNTHGAGCTYSAAITAELAKGKPVKE 231 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeC-CEEEEEEeCccC-CCCCCchHHHHHHHHHHHHHCCCCHHH
Confidence 22 222 289999999998763 34444 555678888886 899999999999999999999999999
Q ss_pred HHHHHHHHhchheee
Q psy8856 272 TGRLSSLMGSTEISH 286 (312)
Q Consensus 272 a~~~a~a~aa~~~~~ 286 (312)
|+++|.+.....+.+
T Consensus 232 A~~~A~~~~~~~i~~ 246 (268)
T PRK12412 232 AVKTAKEFITAAIRY 246 (268)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877765
No 52
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.74 E-value=7.5e-17 Score=138.74 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhcCC-cEEEcCCCCc----ccCCHH---HH-HHHhhcccEEEeCHHHHHHhhcCCCCCHH-------H
Q psy8856 145 CCNMIKHIKKILKLKI-PFIFDPGQSL----SMFTKE---EL-IKIIKKSSYIIVNEYESKLLVSKTSLSLQ-------K 208 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~~-~v~~D~~~~~----~~~~~~---~l-~~ll~~~dvl~~n~~E~~~l~~~~~~~~~-------~ 208 (312)
.+.+..+.+.+++.+. ++++||.... .++..+ .+ +.+++++|++++|..|++.|++....+.+ .
T Consensus 79 ~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~a~~ 158 (254)
T TIGR00097 79 AEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQDMIKAAKK 158 (254)
T ss_pred HHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4666777777777778 6999997532 223222 22 35789999999999999999986433322 2
Q ss_pred Hh-hcCCEEEEeeCC----Cce-EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhch
Q psy8856 209 IN-EQVKVLIVTRGE----LGS-DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGST 282 (312)
Q Consensus 209 l~-~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~ 282 (312)
+. .|++.++||.|+ +|. +++++ ++.++++.++++ ++|++|+||+|.|+|++++++|+++++|+++|++++..
T Consensus 159 l~~~g~~~Vvvt~G~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~d~~GaGD~f~aalaa~la~g~~l~eA~~~A~~~~~~ 236 (254)
T TIGR00097 159 LRELGPKAVLIKGGHLEGDQAVDVLFDG-GEIHILKAPRIE-TKNTHGTGCTLSAAIAANLAKGLSLKEAVKEAKEFVTG 236 (254)
T ss_pred HHhcCCCEEEEeCCCCCCCceeEEEEEC-CeEEEEEecccC-CCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 22 389999999997 344 55666 777788888886 89999999999999999999999999999999999998
Q ss_pred heee
Q psy8856 283 EISH 286 (312)
Q Consensus 283 ~~~~ 286 (312)
.+.+
T Consensus 237 ~i~~ 240 (254)
T TIGR00097 237 AIRY 240 (254)
T ss_pred HHHH
Confidence 8876
No 53
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.74 E-value=1.6e-16 Score=146.85 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEcCCCCc----ccCCHHH----HHHHhhcccEEEeCHHHHHHhhcCCCCCH-------HHH
Q psy8856 145 CCNMIKHIKKILKLKIPFIFDPGQSL----SMFTKEE----LIKIIKKSSYIIVNEYESKLLVSKTSLSL-------QKI 209 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~----l~~ll~~~dvl~~n~~E~~~l~~~~~~~~-------~~l 209 (312)
.+.+..+++.+++.+.++++||..+. .++..+. ...+++++|++++|..|++.|++....+. +.+
T Consensus 83 ~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~L 162 (448)
T PRK08573 83 REIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKYI 162 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 57778888888888999999997542 3444322 24678999999999999999998653332 234
Q ss_pred h--hcCCEEEEeeCC----Cce-EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhch
Q psy8856 210 N--EQVKVLIVTRGE----LGS-DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGST 282 (312)
Q Consensus 210 ~--~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~ 282 (312)
. .|++.|+||.|. +|+ +++++ ++.+++++++++ ++|++||||+|.|+|++++++|+++++|+++|+++...
T Consensus 163 ~~~~G~~~VvVt~G~~~g~~~~~~~~~~-~~~~~~~~~~v~-~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~A~~~~~~ 240 (448)
T PRK08573 163 VEELGAEAVVVKGGHLEGEEAVDVLYHN-GTFREFRAPRVE-SGCTHGTGCSFSAAIAAGLAKGLDPEEAIKTAKKFITM 240 (448)
T ss_pred HHHcCCCEEEEecccCCCCceeEEEEEC-CeEEEEEecCcC-CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3 388999999985 344 44556 677788888886 89999999999999999999999999999999998888
Q ss_pred hee
Q psy8856 283 EIS 285 (312)
Q Consensus 283 ~~~ 285 (312)
.+.
T Consensus 241 al~ 243 (448)
T PRK08573 241 AIK 243 (448)
T ss_pred HHH
Confidence 888
No 54
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.73 E-value=6.8e-17 Score=139.14 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHhc--CCcEEEcCCCCc--ccC-----CHHHHHHHhh-cccEEEeCHHHHHHhhcCCCCCHH-------
Q psy8856 145 CCNMIKHIKKILKL--KIPFIFDPGQSL--SMF-----TKEELIKIIK-KSSYIIVNEYESKLLVSKTSLSLQ------- 207 (312)
Q Consensus 145 ~~~~~~~~~~~~~~--~~~v~~D~~~~~--~~~-----~~~~l~~ll~-~~dvl~~n~~E~~~l~~~~~~~~~------- 207 (312)
.+.+.++++.++++ +.++++||.... ..| ..+.+.+++. ++|++++|..|++.+++....+.+
T Consensus 87 ~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~~~~~~~ 166 (254)
T cd01173 87 VEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLEDAKAAAR 166 (254)
T ss_pred HHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHHHHHHHH
Confidence 46778888888776 889999997422 223 1244556666 999999999999999987543322
Q ss_pred HHh-hcCCEEEEeeCCC------ceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Q psy8856 208 KIN-EQVKVLIVTRGEL------GSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMG 280 (312)
Q Consensus 208 ~l~-~g~~~vvvt~G~~------G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~a 280 (312)
.+. .+++.|+||.|.. |++++++ ++.++++.++.+.++|++|+||+|.|+|++++++|+++++|+++|++..
T Consensus 167 ~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~g~~~~~a~~~A~~~~ 245 (254)
T cd01173 167 ALHAKGPKTVVVTSVELADDDRIEMLGSTA-TEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLKGKSLAEALEKALNFV 245 (254)
T ss_pred HHHHhCCCEEEEEeeccCCCCcEEEEEEec-CccEEEEeeccCCCCCcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 3899999999985 7877776 6555555554421489999999999999999999999999999999987
Q ss_pred chhee
Q psy8856 281 STEIS 285 (312)
Q Consensus 281 a~~~~ 285 (312)
...+.
T Consensus 246 ~~~i~ 250 (254)
T cd01173 246 HEVLE 250 (254)
T ss_pred HHHHH
Confidence 65553
No 55
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.73 E-value=3e-16 Score=134.15 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=110.2
Q ss_pred CceEEEECCC-ChHHHHHHHHHHHhc-CCcEEEcCCCCccc----CCHH---HH-HHHhhcccEEEeCHHHHHHhhcCCC
Q psy8856 134 DIKIAIISPD-NCCNMIKHIKKILKL-KIPFIFDPGQSLSM----FTKE---EL-IKIIKKSSYIIVNEYESKLLVSKTS 203 (312)
Q Consensus 134 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~v~~D~~~~~~~----~~~~---~l-~~ll~~~dvl~~n~~E~~~l~~~~~ 203 (312)
.++.+.+.-. ..+....+.+.+++. +.++++||...... +..+ .+ ..+++++|++++|..|++.|++...
T Consensus 68 ~~~~i~~G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 147 (242)
T cd01169 68 PVDAIKIGMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEI 147 (242)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCC
Confidence 3444444322 245556666666654 78999999864322 2222 22 4566999999999999999998754
Q ss_pred CCHH-------HHh-hcCCEEEEeeCCCc-----eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHH
Q psy8856 204 LSLQ-------KIN-EQVKVLIVTRGELG-----SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWY 270 (312)
Q Consensus 204 ~~~~-------~l~-~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~ 270 (312)
.+.+ .+. .+.+.++||.|++| .+++++ ++.++++.++++ ++|++|+||+|.|+|++++++|++++
T Consensus 148 ~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~GaGD~f~a~l~a~l~~g~~~~ 225 (242)
T cd01169 148 ATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDG-GGFFEFESPRID-TKNTHGTGCTLSSAIAANLAKGLSLE 225 (242)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEEC-CcEEEEecceeC-CCCCCChHHHHHHHHHHHHHCCCCHH
Confidence 3321 222 38999999999885 356666 677888888876 89999999999999999999999999
Q ss_pred HHHHHHHHHhchhe
Q psy8856 271 TTGRLSSLMGSTEI 284 (312)
Q Consensus 271 ~a~~~a~a~aa~~~ 284 (312)
+|+++|++.-...+
T Consensus 226 ~A~~~A~~~~~~~i 239 (242)
T cd01169 226 EAVREAKEYVTQAI 239 (242)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876554
No 56
>PRK05756 pyridoxamine kinase; Validated
Probab=99.72 E-value=1.3e-16 Score=139.59 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHhcC--CcEEEcCCCCcc---cCC----HHHH-HHHhhcccEEEeCHHHHHHhhcCCCCCHHH------
Q psy8856 145 CCNMIKHIKKILKLK--IPFIFDPGQSLS---MFT----KEEL-IKIIKKSSYIIVNEYESKLLVSKTSLSLQK------ 208 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~--~~v~~D~~~~~~---~~~----~~~l-~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~------ 208 (312)
.+.+.++++.+++.+ ..+++||..... .|. .+.+ +.+++++|++++|..|++.|++....+.++
T Consensus 89 ~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~~~~~ 168 (286)
T PRK05756 89 GEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETLEDAVAAAR 168 (286)
T ss_pred HHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCHHHHHHHHH
Confidence 367778887777655 558899986542 221 1223 358899999999999999999865433322
Q ss_pred -Hh-hcCCEEEEeeCCC--------ceEEEecCCceEEcCCcccCCc-CCCCCchhhhHHHHHHHHHcCCCHHHHHHHHH
Q psy8856 209 -IN-EQVKVLIVTRGEL--------GSDIFLNNERKIKIPCVKADRI-VDPTGCGDAFRSGVLFGIINNLDWYTTGRLSS 277 (312)
Q Consensus 209 -l~-~g~~~vvvt~G~~--------G~~~~~~~~~~~~~~~~~~~~~-vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~ 277 (312)
+. .|++.++||.|.. |++++++ ++.++++.++++ . +|++||||+|.|+|++++++|+++++|+++|+
T Consensus 169 ~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~-~~v~~~GaGD~f~a~~~a~l~~g~~~~~al~~A~ 246 (286)
T PRK05756 169 ALIARGPKIVLVTSLARAGYPADRFEMLLVTA-DGAWHISRPLVD-FMRQPVGVGDLTSALFLARLLQGGSLEEALEHTT 246 (286)
T ss_pred HHHHhCCCEEEEeccccCCCCCCcEEEEEEEC-CceEEEecCccC-CCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 22 3899999999876 4667777 667778777765 6 69999999999999999999999999999999
Q ss_pred HHhchheee
Q psy8856 278 LMGSTEISH 286 (312)
Q Consensus 278 a~aa~~~~~ 286 (312)
+.....+..
T Consensus 247 ~~~~~~i~~ 255 (286)
T PRK05756 247 AAVYEVMAR 255 (286)
T ss_pred HHHHHHHHH
Confidence 999887765
No 57
>PRK07105 pyridoxamine kinase; Validated
Probab=99.70 E-value=5.5e-16 Score=135.59 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCc--ccCC------HHHHHHHhhcccEEEeCHHHHHHhhcCCCC----CHH------
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSL--SMFT------KEELIKIIKKSSYIIVNEYESKLLVSKTSL----SLQ------ 207 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~--~~~~------~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~----~~~------ 207 (312)
+.+.++++.+++.+.++++||.... ..|. .+.++++++++|++++|..|++.|++.... +.+
T Consensus 91 ~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~~~~~~a 170 (284)
T PRK07105 91 QIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDKPYLEKSYSEEEIKQLL 170 (284)
T ss_pred HHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCCCcCcCCCCHHHHHHHH
Confidence 4555666665666889999998532 1221 244668999999999999999999986421 122
Q ss_pred -HHh-hcCCEEEEee-----CCCceEEEecCC-ceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy8856 208 -KIN-EQVKVLIVTR-----GELGSDIFLNNE-RKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLM 279 (312)
Q Consensus 208 -~l~-~g~~~vvvt~-----G~~G~~~~~~~~-~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~ 279 (312)
.+. .|++.++||. |..|++++++++ +.++.+.+.. .+|++|+||+|.|+|++++++|+++++|+++|+++
T Consensus 171 ~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~--~~~~~GaGD~f~aa~~~~l~~g~~l~~av~~A~~~ 248 (284)
T PRK07105 171 RKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYI--PAHYPGTGDIFTSVITGSLLQGDSLPIALDRAVQF 248 (284)
T ss_pred HHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeeccc--CCCcCChhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222 2889999999 677888887522 3445555543 47999999999999999999999999999999999
Q ss_pred hchheeeccCCC----CCCChHHHHHHHHH
Q psy8856 280 GSTEISHQGGQK----HCPSLSEIDQRFKE 305 (312)
Q Consensus 280 aa~~~~~~g~~~----~~~~~~ev~~~~~~ 305 (312)
+...+.+-.... .-...+++..++.+
T Consensus 249 ~~~~i~~~~~~~~~~~~~i~~~~~l~~~~~ 278 (284)
T PRK07105 249 IEKGIRATLGLKYDLREGILLEKVLGYLIA 278 (284)
T ss_pred HHHHHHHHHhcCCchhhCccHHHHHHHHHH
Confidence 988887543321 12344555555444
No 58
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.70 E-value=3.9e-16 Score=135.31 Aligned_cols=140 Identities=13% Similarity=0.204 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHhcCC-cEEEcCCCCc----ccCCHH---HH-HHHhhcccEEEeCHHHHHHhhcCCCCCH----H----
Q psy8856 145 CCNMIKHIKKILKLKI-PFIFDPGQSL----SMFTKE---EL-IKIIKKSSYIIVNEYESKLLVSKTSLSL----Q---- 207 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~~-~v~~D~~~~~----~~~~~~---~l-~~ll~~~dvl~~n~~E~~~l~~~~~~~~----~---- 207 (312)
.+....+.+.+++.+. ++++||.... ..+..+ .+ +++++++|++++|..|++.|++....+. +
T Consensus 85 ~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~a~ 164 (266)
T PRK06427 85 AEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPIADTEDEMKAAAR 164 (266)
T ss_pred HHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 4556666666766665 7999997532 223222 23 3588999999999999999998643221 1
Q ss_pred HHhh-cCCEEEEeeCC--Cce----EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Q psy8856 208 KINE-QVKVLIVTRGE--LGS----DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMG 280 (312)
Q Consensus 208 ~l~~-g~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~a 280 (312)
.+.+ +++.|+||.|. +|. +++++ ++.++++.++++ .+|++|+||+|.|+|++++++|+++++|+++|++.+
T Consensus 165 ~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~-~~~~~~~~~~~~-~~~~~GaGD~f~a~l~~~l~~g~~l~~A~~~A~~~~ 242 (266)
T PRK06427 165 ALHALGCKAVLIKGGHLLDGEESVDWLFDG-EGEERFSAPRIP-TKNTHGTGCTLSAAIAAELAKGASLLDAVQTAKDYV 242 (266)
T ss_pred HHHhcCCCEEEEcCCCCCCCCceeEEEEeC-CcEEEEEeeeEC-CCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 2222 88999999998 553 56666 666788888876 789999999999999999999999999999999999
Q ss_pred chheee
Q psy8856 281 STEISH 286 (312)
Q Consensus 281 a~~~~~ 286 (312)
...+.+
T Consensus 243 ~~~i~~ 248 (266)
T PRK06427 243 TRAIRH 248 (266)
T ss_pred HHHHHH
Confidence 988876
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.67 E-value=1.6e-15 Score=132.19 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=108.4
Q ss_pred CceEEEE----CCCChHHHHHHHHHHHh--cCCcEEEcCCCCcc---cC-C---HHHHH-HHhhcccEEEeCHHHHHHhh
Q psy8856 134 DIKIAII----SPDNCCNMIKHIKKILK--LKIPFIFDPGQSLS---MF-T---KEELI-KIIKKSSYIIVNEYESKLLV 199 (312)
Q Consensus 134 ~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~v~~D~~~~~~---~~-~---~~~l~-~ll~~~dvl~~n~~E~~~l~ 199 (312)
.++.+.+ +....+.+.++++..+. .+.++++||..... .| . .+.++ .+++.+|++++|..|++.|+
T Consensus 88 ~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~ 167 (281)
T PRK08176 88 QLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILT 167 (281)
T ss_pred cCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHh
Confidence 4566555 33444666666666543 47789999984321 22 1 13344 58899999999999999999
Q ss_pred cCCCCCHH-------HHhh-cCCEEEEeeCCCc-------eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHH
Q psy8856 200 SKTSLSLQ-------KINE-QVKVLIVTRGELG-------SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGII 264 (312)
Q Consensus 200 ~~~~~~~~-------~l~~-g~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~ 264 (312)
+....+.+ .+.+ |++.|+||.|.+| .+++++ ++.+..+. +.. .+|++|+||+|.|+|+++++
T Consensus 168 g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~~GaGD~faa~~~a~l~ 244 (281)
T PRK08176 168 GKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTA-DSVNVISH-PRV-DTDLKGTGDLFCAELVSGLL 244 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeC-CceEEEec-Ccc-CCCCCChhHHHHHHHHHHHh
Confidence 86533322 2322 8999999999988 566666 55444443 443 57999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhchheee
Q psy8856 265 NNLDWYTTGRLSSLMGSTEISH 286 (312)
Q Consensus 265 ~g~~~~~a~~~a~a~aa~~~~~ 286 (312)
+|+++++|+++|+..-...+..
T Consensus 245 ~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 245 KGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887766654
No 60
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.67 E-value=1.1e-15 Score=133.87 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=106.5
Q ss_pred CCceEEEECCCC-----hHHHHHHHHHHHhcC--CcEEEcCCCCcc---cCC----HHHH-HHHhhcccEEEeCHHHHHH
Q psy8856 133 ADIKIAIISPDN-----CCNMIKHIKKILKLK--IPFIFDPGQSLS---MFT----KEEL-IKIIKKSSYIIVNEYESKL 197 (312)
Q Consensus 133 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~v~~D~~~~~~---~~~----~~~l-~~ll~~~dvl~~n~~E~~~ 197 (312)
..++.+ +++.. .+.+.++++.+++.+ ..+++||..... .|. .+.+ +.+++++|++++|..|++.
T Consensus 73 ~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~ 151 (286)
T TIGR00687 73 NQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELEL 151 (286)
T ss_pred ccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHH
Confidence 356665 33332 357777888777654 668899964321 111 1223 3578899999999999999
Q ss_pred hhcCCCCCHHH-------Hh-hcCCEEEEe-eCCCce--------EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHH
Q psy8856 198 LVSKTSLSLQK-------IN-EQVKVLIVT-RGELGS--------DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260 (312)
Q Consensus 198 l~~~~~~~~~~-------l~-~g~~~vvvt-~G~~G~--------~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~ 260 (312)
+++.+..+.++ +. .|++.++|| .|.+|+ +++++ ++.++++.++.+.++|++||||+|.|+|+
T Consensus 152 L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~A~~l 230 (286)
T TIGR00687 152 LTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQ-EGRWHISRPLAVFMRQPVGTGDLIAALLL 230 (286)
T ss_pred HhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcC-CceEEEeccCcCCCCCCCChHHHHHHHHH
Confidence 99865433222 22 388999999 687775 44555 55667776665424899999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHhchh
Q psy8856 261 FGIINNLDWYTTGRLSSLMGSTE 283 (312)
Q Consensus 261 ~~l~~g~~~~~a~~~a~a~aa~~ 283 (312)
+++.+|+++++|+++|+++....
T Consensus 231 ~~l~~g~~~~~al~~A~~~v~~~ 253 (286)
T TIGR00687 231 ATLLHGNSLKEALEKTVSAVYHV 253 (286)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999993333
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.66 E-value=2.6e-15 Score=130.18 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhcC-CcEEEcCCCCcc----cCCH---HHHH-HHhhcccEEEeCHHHHHHhhcC-CCCCHH-------
Q psy8856 145 CCNMIKHIKKILKLK-IPFIFDPGQSLS----MFTK---EELI-KIIKKSSYIIVNEYESKLLVSK-TSLSLQ------- 207 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~v~~D~~~~~~----~~~~---~~l~-~ll~~~dvl~~n~~E~~~l~~~-~~~~~~------- 207 (312)
.+.+..+.+.+++.+ .++++||..... .... +.+. .+++.+|++++|..|++.|++. ...+.+
T Consensus 86 ~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~~~~~~~~aa~ 165 (270)
T PRK12616 86 VDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIKTVEQMKEAAK 165 (270)
T ss_pred HHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 355555556666555 469999996322 1122 3333 4888999999999999999985 222322
Q ss_pred HHh-hcCCEEEEeeCCCce------EEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Q psy8856 208 KIN-EQVKVLIVTRGELGS------DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMG 280 (312)
Q Consensus 208 ~l~-~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~a 280 (312)
.+. .|++.++||.|.+|. +++++ ++.++++.++++ ..+++|+||+|.|+|++++++|.++++|+++|.+..
T Consensus 166 ~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~-~~~~~~~~~~~~-~~~t~GaGD~fsaalaa~l~~g~~l~~Av~~A~~~~ 243 (270)
T PRK12616 166 KIHELGAQYVVITGGGKLKHEKAVDVLYDG-ETAEVLESEMID-TPYTHGAGCTFSAAVTAELAKGSEVKEAIYAAKEFI 243 (270)
T ss_pred HHHHcCCCEEEEeCCCCCcCCceEEEEEEC-CeEEEEEeeeeC-CCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 222 289999999998762 45555 666777888776 889999999999999999999999999999999998
Q ss_pred chheee
Q psy8856 281 STEISH 286 (312)
Q Consensus 281 a~~~~~ 286 (312)
...+..
T Consensus 244 ~~~i~~ 249 (270)
T PRK12616 244 TAAIKE 249 (270)
T ss_pred HHHHHH
Confidence 877765
No 62
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.50 E-value=1.7e-12 Score=122.29 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEcCCCC----cccCCH---H----HH-HHHhhcccEEEeCHHHHHHhhcCC-CCCHH----
Q psy8856 145 CCNMIKHIKKILKLKIPFIFDPGQS----LSMFTK---E----EL-IKIIKKSSYIIVNEYESKLLVSKT-SLSLQ---- 207 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~~~v~~D~~~~----~~~~~~---~----~l-~~ll~~~dvl~~n~~E~~~l~~~~-~~~~~---- 207 (312)
.+.+..+.+.++ +.++++||... ..++.. + .+ ..+++.+|++++|..|++.|+|.. ..+.+
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~ 388 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARA 388 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHH
Confidence 455555555554 67899999863 122221 1 12 257899999999999999999864 22222
Q ss_pred ---HHhh-cCCEEEEeeCCCc-------eEEEec-CCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHH
Q psy8856 208 ---KINE-QVKVLIVTRGELG-------SDIFLN-NERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRL 275 (312)
Q Consensus 208 ---~l~~-g~~~vvvt~G~~G-------~~~~~~-~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 275 (312)
.+.+ |++.|+||.|.+| ..++.. +++.++++.++++ +++++|+||+|.|+|++++++|.++++|+++
T Consensus 389 aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~-~~~~~GaGD~fsaaiaa~la~G~~l~eAv~~ 467 (504)
T PTZ00347 389 AAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIA-TINTHGTGCTLASAISSFLARGYTVPDAVER 467 (504)
T ss_pred HHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeEC-CCCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2222 8999999999963 345543 1456778888876 8999999999999999999999999999999
Q ss_pred HHHHhchheee
Q psy8856 276 SSLMGSTEISH 286 (312)
Q Consensus 276 a~a~aa~~~~~ 286 (312)
|.+.-...+.+
T Consensus 468 A~~~v~~~i~~ 478 (504)
T PTZ00347 468 AIGYVHEAIVR 478 (504)
T ss_pred HHHHHHHHHHh
Confidence 98877666554
No 63
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.45 E-value=1.2e-11 Score=103.95 Aligned_cols=149 Identities=12% Similarity=0.173 Sum_probs=109.8
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcC-CcEEEcCCCCc----ccCCHHH----HHHHhhcccEEEeCHHHHHHhhcC-C
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLK-IPFIFDPGQSL----SMFTKEE----LIKIIKKSSYIIVNEYESKLLVSK-T 202 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~D~~~~~----~~~~~~~----l~~ll~~~dvl~~n~~E~~~l~~~-~ 202 (312)
+.++..++.. .+.+....+.+++.+ .++++||.... .+...+. .++|+|.++++.||-.|++.|+|. .
T Consensus 74 ~avKtGML~~--~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~ 151 (263)
T COG0351 74 DAVKTGMLGS--AEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPK 151 (263)
T ss_pred CEEEECCcCC--HHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCc
Confidence 3444444432 344455555556666 77999998421 2222222 348999999999999999999995 4
Q ss_pred CCCHHHH-------hh-cCCEEEEeeCCCc----eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHH
Q psy8856 203 SLSLQKI-------NE-QVKVLIVTRGELG----SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWY 270 (312)
Q Consensus 203 ~~~~~~l-------~~-g~~~vvvt~G~~G----~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~ 270 (312)
..+.+++ .+ |++.|+|+-|... -++|++ +..+.++.++++ ..+|.|+|++|.|++.+.|++|.+++
T Consensus 152 i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~-~~~~~f~~~ri~-t~~tHGTGCTlSaAIaa~LA~G~~l~ 229 (263)
T COG0351 152 IKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDG-GSFYTFEAPRIP-TKNTHGTGCTLSAAIAANLAKGLSLE 229 (263)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcC-CceEEEeccccC-CCCCCCccHHHHHHHHHHHHcCCCHH
Confidence 3343332 22 9999999998754 355566 677788898887 78999999999999999999999999
Q ss_pred HHHHHHHHHhchhee
Q psy8856 271 TTGRLSSLMGSTEIS 285 (312)
Q Consensus 271 ~a~~~a~a~aa~~~~ 285 (312)
+|++.|-..-..++.
T Consensus 230 ~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 230 EAVKKAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988877776
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.44 E-value=1.6e-12 Score=122.31 Aligned_cols=141 Identities=11% Similarity=0.164 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHhcCCc-EEEcCCCCc----ccCCH---HHH-HHHhhcccEEEeCHHHHHHhhcCCCC-CHH-------
Q psy8856 145 CCNMIKHIKKILKLKIP-FIFDPGQSL----SMFTK---EEL-IKIIKKSSYIIVNEYESKLLVSKTSL-SLQ------- 207 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-v~~D~~~~~----~~~~~---~~l-~~ll~~~dvl~~n~~E~~~l~~~~~~-~~~------- 207 (312)
.+.+..+++.+++.+.+ +++||.... .+... +.+ +++++.+|++++|..|++.|++.... +.+
T Consensus 90 ~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~~~a~ 169 (502)
T PLN02898 90 AEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPLETVADMRSAAK 169 (502)
T ss_pred HHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 46666666777766664 999996411 11222 223 36889999999999999999874321 222
Q ss_pred HHhh-cCCEEEEeeCCCc------eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Q psy8856 208 KINE-QVKVLIVTRGELG------SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMG 280 (312)
Q Consensus 208 ~l~~-g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~a 280 (312)
.+.+ |++.|+||.|..+ .+++++ ++.++++.++++ .++++|+||+|.|+|++++++|+++++|+++|.+..
T Consensus 170 ~l~~~G~~~VvItgg~~~~~~~~~~~l~~~-~~~~~~~~~~i~-~~~t~GaGD~fsaaiaa~l~~G~~l~eAv~~A~~~v 247 (502)
T PLN02898 170 ELHKLGPRYVLVKGGHLPDSLDAVDVLYDG-TEFHELRSSRIK-TRNTHGTGCTLASCIAAELAKGSDMLSAVKVAKRYV 247 (502)
T ss_pred HHHhcCCCEEEEcCCCCCCCCcceEEEEcC-CeEEEEecceeC-CCCCCchhhhHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222 8899999999753 355565 666778888876 789999999999999999999999999999999999
Q ss_pred chheeec
Q psy8856 281 STEISHQ 287 (312)
Q Consensus 281 a~~~~~~ 287 (312)
...+.+-
T Consensus 248 ~~ai~~~ 254 (502)
T PLN02898 248 ETALEYS 254 (502)
T ss_pred HHHHHhh
Confidence 9888763
No 65
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.44 E-value=2.8e-12 Score=112.76 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcC--CcEEEcCCC--CcccCCH----HHHHHHhhcccEEEeCHHHHHHhhcCCCCCHH-------HHh
Q psy8856 146 CNMIKHIKKILKLK--IPFIFDPGQ--SLSMFTK----EELIKIIKKSSYIIVNEYESKLLVSKTSLSLQ-------KIN 210 (312)
Q Consensus 146 ~~~~~~~~~~~~~~--~~v~~D~~~--~~~~~~~----~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~-------~l~ 210 (312)
+.+.++++.+++++ .++++||.. +...|.. +.++++++++|++++|+.|++.++|....+.+ .+.
T Consensus 93 ~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~~~~~l~ 172 (296)
T PTZ00344 93 REVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFH 172 (296)
T ss_pred HHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 33444444445454 479999875 2233432 33567888999999999999999986433322 232
Q ss_pred -hcCCEEEEe---eCCCc----eEEEe--cC---CceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHH
Q psy8856 211 -EQVKVLIVT---RGELG----SDIFL--NN---ERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSS 277 (312)
Q Consensus 211 -~g~~~vvvt---~G~~G----~~~~~--~~---~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~ 277 (312)
.+++.|+|| .|.+| +++.+ .+ ++.+.++.++++ ++++|+||+|.|+|++.+.+| ++++|+++|.
T Consensus 173 ~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~GaGD~f~A~~~a~l~~g-~~~~a~~~A~ 249 (296)
T PTZ00344 173 EQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE--GRYTGTGDLFAALLLAFSHQH-PMDLAVGKAM 249 (296)
T ss_pred HhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC--CCCCCchHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 389999999 55555 44432 11 224556666654 577999999999999888888 9999999999
Q ss_pred HHhchheee
Q psy8856 278 LMGSTEISH 286 (312)
Q Consensus 278 a~aa~~~~~ 286 (312)
+.....+..
T Consensus 250 a~~~~~i~~ 258 (296)
T PTZ00344 250 GVLQDIIKA 258 (296)
T ss_pred HHHHHHHHH
Confidence 887766654
No 66
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.44 E-value=1.2e-12 Score=112.61 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=109.0
Q ss_pred CCceEEEECCCCh--HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCC-----
Q psy8856 133 ADIKIAIISPDNC--CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS----- 205 (312)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~----- 205 (312)
..++.+.+.+... +...++++.+++.+.++++|+............ .+.+.++++++|..|++.|++....+
T Consensus 76 ~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~-~~~~~~~iltPn~~E~~~L~g~~~~~~~~~~ 154 (254)
T cd01171 76 ERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPSL-IKRYGPVVLTPHPGEFARLLGALVEEIQADR 154 (254)
T ss_pred ccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChhh-hccCCCEEECCCHHHHHHHhCCChhhhhhHH
Confidence 4667777776432 677778888888899999998742111100000 24567899999999999999864322
Q ss_pred ---HHHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhch
Q psy8856 206 ---LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGST 282 (312)
Q Consensus 206 ---~~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~ 282 (312)
.+++.+....+++..|. +.+++++ ++.++++..... .+++.|+||+|.|.+.+.+++|+++.+|+++|+.+.+.
T Consensus 155 ~~~a~~l~~~~~~~vvlkG~-~~~i~~~-~~~~~~~~~~~~-~~~~~GaGD~lag~iaa~la~g~~~~eA~~~A~~~~~~ 231 (254)
T cd01171 155 LAAAREAAAKLGATVVLKGA-VTVIADP-DGRVYVNPTGNP-GLATGGSGDVLAGIIAALLAQGLSPLEAAALAVYLHGL 231 (254)
T ss_pred HHHHHHHHHHcCcEEEEcCC-CCEEECC-CCcEEEECCCCc-ccccCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12233334566677784 6667776 555667776665 88999999999777777788999999999999999999
Q ss_pred heeecc
Q psy8856 283 EISHQG 288 (312)
Q Consensus 283 ~~~~~g 288 (312)
+..+..
T Consensus 232 a~~~~~ 237 (254)
T cd01171 232 AGDLAA 237 (254)
T ss_pred HHHHHH
Confidence 887643
No 67
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.42 E-value=4.2e-12 Score=124.43 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=108.2
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhc-CCcEEEcCCCCc----ccCC---HHHHHHHhhcccEEEeCHHHHHHhhcCCC-
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKL-KIPFIFDPGQSL----SMFT---KEELIKIIKKSSYIIVNEYESKLLVSKTS- 203 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~D~~~~~----~~~~---~~~l~~ll~~~dvl~~n~~E~~~l~~~~~- 203 (312)
+.+++.++.. .+.+..+.+.+++. +.++++||.... .++. .+.++++++.+|++++|..|++.|++...
T Consensus 312 ~aiKiGmL~s--~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~~~ 389 (755)
T PRK09517 312 DAVKLGMLGS--ADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEAPA 389 (755)
T ss_pred CEEEECCCCC--HHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCCCC
Confidence 3444444432 45555666666653 577999997532 2222 23356799999999999999999998532
Q ss_pred CCHH-------HHhh-cCCEEEEeeCC------CceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCH
Q psy8856 204 LSLQ-------KINE-QVKVLIVTRGE------LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDW 269 (312)
Q Consensus 204 ~~~~-------~l~~-g~~~vvvt~G~------~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~ 269 (312)
.+.+ .+.+ +...||||.|. .+++++.+ ++.++++.++++ .++++|+||+|.|+|++++++|.++
T Consensus 390 ~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~-~~~~~~~~~~v~-~~~t~GaGDtfsaaiaa~La~G~sl 467 (755)
T PRK09517 390 ITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPD-GSVHQVENPRVN-TTNSHGTGCSLSAALATLIAAGESV 467 (755)
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCC-CeEEEEeecccC-CCCCcChHHHHHHHHHHHHHCCCCH
Confidence 2222 2333 34579999984 45555444 666788888886 8999999999999999999999999
Q ss_pred HHHHHHHHHHhchheee
Q psy8856 270 YTTGRLSSLMGSTEISH 286 (312)
Q Consensus 270 ~~a~~~a~a~aa~~~~~ 286 (312)
++|+++|.+.....+.+
T Consensus 468 ~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 468 EKALEWATRWLNEALRH 484 (755)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999887777654
No 68
>KOG3009|consensus
Probab=99.39 E-value=3.4e-12 Score=112.46 Aligned_cols=230 Identities=18% Similarity=0.245 Sum_probs=150.2
Q ss_pred cEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEEEeecC-hHHHHHH
Q psy8856 2 NSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSYLKH 80 (312)
Q Consensus 2 ~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~ 80 (312)
|=+++|...+|....+|+.. ...+ ...-....+..||.+.|.|.++++||.++.+++++|+| +.++..
T Consensus 342 KPv~vGa~i~D~~~k~d~d~---K~dG-------~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~- 410 (614)
T KOG3009|consen 342 KPVSVGATIVDFEAKTDEDV---KDDG-------GSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFR- 410 (614)
T ss_pred CceeecceEEEeEEeecccc---cccC-------CcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhh-
Confidence 34789999999999988422 1111 11122346778999999999999999999999999999 211110
Q ss_pred HHHcCCccceeeecCCcccceEEEEEecCCCeeEEEeCCccccCCccccCCcCCceEEEECCCC-hHHHHHHHHHHHhcC
Q psy8856 81 LKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDN-CCNMIKHIKKILKLK 159 (312)
Q Consensus 81 l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 159 (312)
+. +..++ -..+++. .+++++++.+. .....++++ +++.+
T Consensus 411 --~~--~~~~~--------------------------------e~~~dl~---~a~~I~~DsNiS~~~Ma~il~-ak~~k 450 (614)
T KOG3009|consen 411 --QN--SHKIV--------------------------------ESNEDLL---SADFILLDSNISVPVMARILE-AKKHK 450 (614)
T ss_pred --hh--hhhhh--------------------------------hhhhhhh---cCCEEEEcCCCCHHHHHHHHH-hhhcc
Confidence 00 00000 0011111 46778787764 455566666 88899
Q ss_pred CcEEEcCCCCcccCCHHHHHHHh-hcccEEEeCHHHHHHhhcCCCC--CH-----------------HHHhhcCCEEEEe
Q psy8856 160 IPFIFDPGQSLSMFTKEELIKII-KKSSYIIVNEYESKLLVSKTSL--SL-----------------QKINEQVKVLIVT 219 (312)
Q Consensus 160 ~~v~~D~~~~~~~~~~~~l~~ll-~~~dvl~~n~~E~~~l~~~~~~--~~-----------------~~l~~g~~~vvvt 219 (312)
++|+|.|.+-... .+.++-++ ..++.+++|..|+-........ .+ +.+.......++|
T Consensus 451 ~~V~fEPTd~~k~--~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~t 528 (614)
T KOG3009|consen 451 KQVWFEPTDIDKV--KKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVT 528 (614)
T ss_pred CceEecCCCchhh--hhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEE
Confidence 9999999864322 12222222 2577899999998544332221 11 0112267889999
Q ss_pred eCCCceEEEecC--C--ceEEcCCc-ccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhe
Q psy8856 220 RGELGSDIFLNN--E--RKIKIPCV-KADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEI 284 (312)
Q Consensus 220 ~G~~G~~~~~~~--~--~~~~~~~~-~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~ 284 (312)
.-.+|.+..+++ + +....|++ ...++++..|+||+|.++|+++++.+.++.|++.-+..++-.-.
T Consensus 529 l~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~v~es~~gg~~~~rall 598 (614)
T KOG3009|consen 529 LANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKTVVESLQGGQECARALL 598 (614)
T ss_pred eccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcchHhhccccHHHHHHHH
Confidence 999999887751 2 22333333 34468899999999999999999999999999998855554433
No 69
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.37 E-value=1.8e-11 Score=115.84 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCc----ccCCH---HHHHHHhhcccEEEeCHHHHHHhhcCCC-CCH-------HHHh
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSL----SMFTK---EELIKIIKKSSYIIVNEYESKLLVSKTS-LSL-------QKIN 210 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~---~~l~~ll~~~dvl~~n~~E~~~l~~~~~-~~~-------~~l~ 210 (312)
+.+.++++.. ...+|++||..+. ..+.. +.++++++.+|++++|..|++.|++... .+. +.+.
T Consensus 114 ~~v~~~l~~~--~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~~~~~~~d~~~aa~~L~ 191 (530)
T PRK14713 114 DAVRTWLAEH--RPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEPPATTWEEALAQARRLA 191 (530)
T ss_pred HHHHHHHHhC--CCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 4444444432 2446899998632 22332 3456799999999999999999998643 122 2233
Q ss_pred -hcCCEEEEeeCCCc-----eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy8856 211 -EQVKVLIVTRGELG-----SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSL 278 (312)
Q Consensus 211 -~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a 278 (312)
.+...||||.|..+ ..++..+++.++++.++++ .++++|+||+|.|+|++++++|.++++|+++|.+
T Consensus 192 ~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~-~~~t~GaGD~fsaalaa~La~G~~l~eAv~~A~~ 264 (530)
T PRK14713 192 AETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVD-TRNTHGTGCSLSSALATRLGRGGDWAAALRWATA 264 (530)
T ss_pred HhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeC-CCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 24568999988642 3445442556778888876 8999999999999999999999999999999998
No 70
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.32 E-value=6.7e-11 Score=102.79 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=111.9
Q ss_pred CCceEEEECCCCh--HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhcCCCCCH----
Q psy8856 133 ADIKIAIISPDNC--CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL---- 206 (312)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~~~---- 206 (312)
..++.+.+.+..+ +.+.++++.+++.+.++++|+...... +.........+++++|..|++.|++....+.
T Consensus 91 ~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~~l~---~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~~~~ 167 (272)
T TIGR00196 91 ERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADALNLL---TYDKPKREGEVILTPHPGEFKRLLGLVNEIQGDRL 167 (272)
T ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHHHHH---hhcccccCCCEEECCCHHHHHHHhCCchhhhhhHH
Confidence 4567777776332 346777888888899999998632110 0000013468999999999999998643322
Q ss_pred ---HHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHH---HHHh
Q psy8856 207 ---QKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLS---SLMG 280 (312)
Q Consensus 207 ---~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a---~a~a 280 (312)
+++.+....+|++.|..+.++..+ +..+..+. +.. ..+++|+||++.|.+.+.+++|.++.+|+..| +..|
T Consensus 168 ~aa~~l~~~~~~vVv~kG~~~~i~~~~-~~~~~~~~-~~~-~~~~~GaGD~lag~iaa~la~g~~~~~A~~~a~~~~~~a 244 (272)
T TIGR00196 168 EAAQDIAQKLQAVVVLKGAADVIAAPD-GDLWINKT-GNA-ALAKGGTGDVLAGLIGGLLAQNLDPFDAACNAAFAHGLA 244 (272)
T ss_pred HHHHHHHHHhCCEEEEcCCCCEEEcCC-CeEEEECC-CCC-ccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 234445667899999999855544 55554444 444 67899999995555555567999999999777 7777
Q ss_pred chheee-ccCCCCCCChHHHHHHHHHh
Q psy8856 281 STEISH-QGGQKHCPSLSEIDQRFKEA 306 (312)
Q Consensus 281 a~~~~~-~g~~~~~~~~~ev~~~~~~~ 306 (312)
+..+.+ .|.. ..+.+|+.+.+.+.
T Consensus 245 ~~~~~~~~g~~--~~~~~dl~~~i~~~ 269 (272)
T TIGR00196 245 GDLALKNHGAY--GLTALDLIEKIPRV 269 (272)
T ss_pred HHHHHHhcCCC--CcCHHHHHHHHHHH
Confidence 766544 3544 46788888777654
No 71
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.32 E-value=2.9e-11 Score=103.44 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEcCCCCc----ccCCH---HHHH-HHhhcccEEEeCHHHHHHhhcCCCCCHHH-------H
Q psy8856 145 CCNMIKHIKKILKLKIPFIFDPGQSL----SMFTK---EELI-KIIKKSSYIIVNEYESKLLVSKTSLSLQK-------I 209 (312)
Q Consensus 145 ~~~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~---~~l~-~ll~~~dvl~~n~~E~~~l~~~~~~~~~~-------l 209 (312)
.+.+..+.+.+++.+.++++||.... ..... +.++ ++++.+|++.+|..|++.|++....+.++ +
T Consensus 72 ~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l 151 (246)
T PF08543_consen 72 AEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKAL 151 (246)
T ss_dssp HHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred chhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHH
Confidence 34444445555557789999998521 11222 3344 49999999999999999999965444433 2
Q ss_pred h-hcCCEEEEeeCCC----c---eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhc
Q psy8856 210 N-EQVKVLIVTRGEL----G---SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGS 281 (312)
Q Consensus 210 ~-~g~~~vvvt~G~~----G---~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa 281 (312)
. .|++.|+||-+.. + ..++++ ++.++++.++.+ ..+..|.||.|.|++++.+++|+++++|++.|...-.
T Consensus 152 ~~~G~~~VvItg~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~GTGd~fss~laa~l~~g~~l~~Av~~A~~~v~ 229 (246)
T PF08543_consen 152 LALGPKNVVITGGHLDGDEGIITDVLYDG-GEFYWLSSPRIP-TGSFHGTGDLFSSALAAFLAKGYSLEEAVEKAKNFVR 229 (246)
T ss_dssp HHTS-SEEEEEEEEGGSSCEEEEEEEETT-SEEEEEEEEEEC-TSGCTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHhCCceEEEeeeccccccccccceeeec-cceeecceeEEc-CCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 2899999998863 2 334445 777777777665 5789999999999999999999999999999998877
Q ss_pred hhee
Q psy8856 282 TEIS 285 (312)
Q Consensus 282 ~~~~ 285 (312)
..+.
T Consensus 230 ~~i~ 233 (246)
T PF08543_consen 230 RAIK 233 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 72
>PLN02978 pyridoxal kinase
Probab=99.30 E-value=4.1e-11 Score=105.73 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=102.1
Q ss_pred CceEEEE-CCCChHHHHHHHHHHHh--cCCcEEEcCCCCc--ccCCH----HHHH-HHhhcccEEEeCHHHHHHhhcCCC
Q psy8856 134 DIKIAII-SPDNCCNMIKHIKKILK--LKIPFIFDPGQSL--SMFTK----EELI-KIIKKSSYIIVNEYESKLLVSKTS 203 (312)
Q Consensus 134 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~v~~D~~~~~--~~~~~----~~l~-~ll~~~dvl~~n~~E~~~l~~~~~ 203 (312)
.+...++ +....+.+.++++.+++ .+.++++||.... ..|.. +.++ .+++.+|++++|..|++.|++...
T Consensus 89 ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~~~ 168 (308)
T PLN02978 89 HLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGIRI 168 (308)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCCCC
Confidence 3334444 33345677778877765 4577899999643 22322 2243 599999999999999999998653
Q ss_pred CCHH-------HHh-hcCCEEEEeeCC-CceEEE-e--c-----CCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcC
Q psy8856 204 LSLQ-------KIN-EQVKVLIVTRGE-LGSDIF-L--N-----NERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINN 266 (312)
Q Consensus 204 ~~~~-------~l~-~g~~~vvvt~G~-~G~~~~-~--~-----~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g 266 (312)
.+.+ .+. .|++.|+||.+. +|.... . . .++.++++.++++ .. +.|+||+|.|.+++.+.+|
T Consensus 169 ~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~-~~GtGD~fsA~laa~l~~g 246 (308)
T PLN02978 169 VTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIP-AY-FTGTGDLMAALLLGWSHKY 246 (308)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCC-CC-CCCchHHHHHHHHHHHhcC
Confidence 3322 222 288999998754 343322 1 1 0245667777664 34 5899999999877778887
Q ss_pred -CCHHHHHHHHHHHhchheee
Q psy8856 267 -LDWYTTGRLSSLMGSTEISH 286 (312)
Q Consensus 267 -~~~~~a~~~a~a~aa~~~~~ 286 (312)
.++++|++.|.+.-...+.+
T Consensus 247 ~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 247 PDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 79999999998877766554
No 73
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.18 E-value=9e-10 Score=93.78 Aligned_cols=149 Identities=19% Similarity=0.102 Sum_probs=101.4
Q ss_pred CCceEEEECCC-----ChHHHHHHHHHHHhcCCcEEEcCCCCcccCC-HHHHHHHhhc--ccEEEeCHHHHHHhhcCCCC
Q psy8856 133 ADIKIAIISPD-----NCCNMIKHIKKILKLKIPFIFDPGQSLSMFT-KEELIKIIKK--SSYIIVNEYESKLLVSKTSL 204 (312)
Q Consensus 133 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~l~~ll~~--~dvl~~n~~E~~~l~~~~~~ 204 (312)
+.++.+++..- ..+.+...++.+++.+.++++||......-. .+.+++++.. +|++++|..|++.|++....
T Consensus 48 ~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~g~~~~ 127 (242)
T cd01170 48 KIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALAGLTGL 127 (242)
T ss_pred HHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHhCCCCC
Confidence 45566666532 1234445555677789999999974321111 1234556665 99999999999999986421
Q ss_pred -------C--HH-------HHhh-cCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCC
Q psy8856 205 -------S--LQ-------KINE-QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267 (312)
Q Consensus 205 -------~--~~-------~l~~-g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~ 267 (312)
+ .+ .+.+ +...|++| |... +++++ ++.++++..+.. +.+..|+||+|.|++.+.+++|.
T Consensus 128 ~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d-~l~~~-~~~~~~~~~~~~-~~~v~GtGdtLa~aiAa~LA~g~ 203 (242)
T cd01170 128 GKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVD-YITDG-ERVVVVKNGHPL-LTKITGTGCLLGAVIAAFLAVGD 203 (242)
T ss_pred cCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCc-EEEEC-CEEEEEeCCCcc-ccCCCchHHHHHHHHHHHHhCCC
Confidence 1 22 2222 44468888 6555 45666 777788765543 45668999999999999999999
Q ss_pred CHHHHHHHHHHHhchhee
Q psy8856 268 DWYTTGRLSSLMGSTEIS 285 (312)
Q Consensus 268 ~~~~a~~~a~a~aa~~~~ 285 (312)
++.+|+..|...-+....
T Consensus 204 ~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 204 DPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999777666654
No 74
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.08 E-value=8.8e-09 Score=90.28 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=98.8
Q ss_pred CCceEEEECC-CChHHHHHHHHHHHh-c--CCcEEEcCCCC----cccCC-HHHH----HHHhhcccEEEeCHHHHHHhh
Q psy8856 133 ADIKIAIISP-DNCCNMIKHIKKILK-L--KIPFIFDPGQS----LSMFT-KEEL----IKIIKKSSYIIVNEYESKLLV 199 (312)
Q Consensus 133 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~--~~~v~~D~~~~----~~~~~-~~~l----~~ll~~~dvl~~n~~E~~~l~ 199 (312)
+.+++.++.. ...+.+.++++...+ + +.++++||... ..+.. .+.+ +.+++.++++.+|..|++.|+
T Consensus 75 ~aIKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~ 154 (321)
T PTZ00493 75 DVVKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVIL 154 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHh
Confidence 4455555533 233444454443311 1 22489999841 11112 1222 469999999999999999998
Q ss_pred cC----CCCCH-------HHHh--hcCCEEEEeeCCCc------e------EEEecC--------------C------ce
Q psy8856 200 SK----TSLSL-------QKIN--EQVKVLIVTRGELG------S------DIFLNN--------------E------RK 234 (312)
Q Consensus 200 ~~----~~~~~-------~~l~--~g~~~vvvt~G~~G------~------~~~~~~--------------~------~~ 234 (312)
+. ...+. +.+. .|++.|+||-|... . +++.++ + +.
T Consensus 155 g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (321)
T PTZ00493 155 EALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDV 234 (321)
T ss_pred CCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceE
Confidence 71 11122 2343 28999999988632 1 333210 1 13
Q ss_pred EEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheee
Q psy8856 235 IKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISH 286 (312)
Q Consensus 235 ~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~ 286 (312)
+++..+++. ..++.|.||+|.+++++.+++|.++++|++.|...-...+..
T Consensus 235 ~~~~~~ri~-~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 235 YKLRSKRKP-GKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred EEEEecccC-CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 456666654 567899999999999999999999999999998877766665
No 75
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=98.92 E-value=3.5e-08 Score=83.67 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCc--EEEcCCCCc--ccC----CHHH-HHHHhhcccEEEeCHHHHHHhhcCCCCCHHHH-------
Q psy8856 146 CNMIKHIKKILKLKIP--FIFDPGQSL--SMF----TKEE-LIKIIKKSSYIIVNEYESKLLVSKTSLSLQKI------- 209 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~--v~~D~~~~~--~~~----~~~~-l~~ll~~~dvl~~n~~E~~~l~~~~~~~~~~l------- 209 (312)
..+.++++..|+.+.. +++||.... ..+ ..+. ..++++.+|++.||.-|++.|+|..--+.++.
T Consensus 89 ~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L 168 (281)
T COG2240 89 RAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKL 168 (281)
T ss_pred HHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5667778777776444 889998421 111 1222 33699999999999999999999864443332
Q ss_pred h-hcCCEEEEeeCCC-----ceEEEecC--CceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhc
Q psy8856 210 N-EQVKVLIVTRGEL-----GSDIFLNN--ERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGS 281 (312)
Q Consensus 210 ~-~g~~~vvvt~G~~-----G~~~~~~~--~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa 281 (312)
. .|.+.++||.=.+ |..++... ...++.- +.++ .+.+|.||.|.|-|++.+++|.++.+|+..+..+..
T Consensus 169 ~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~--~~~~GtGDL~sallla~lL~g~~~~~al~~~~~~V~ 245 (281)
T COG2240 169 GADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVP--FIPNGTGDLFSALLLARLLEGLSLTQALERATAAVY 245 (281)
T ss_pred hhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcCC--CCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 2789999996544 44455430 2334444 4443 459999999999999999999999999999988776
Q ss_pred hhee
Q psy8856 282 TEIS 285 (312)
Q Consensus 282 ~~~~ 285 (312)
-.+.
T Consensus 246 evl~ 249 (281)
T COG2240 246 EVLQ 249 (281)
T ss_pred HHHH
Confidence 6554
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.76 E-value=4.3e-07 Score=78.40 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCcEEEcCCCCccc-CCHHHHHHHhh--cccEEEeCHHHHHHhhcCCCC--------CH-------HHH
Q psy8856 148 MIKHIKKILKLKIPFIFDPGQSLSM-FTKEELIKIIK--KSSYIIVNEYESKLLVSKTSL--------SL-------QKI 209 (312)
Q Consensus 148 ~~~~~~~~~~~~~~v~~D~~~~~~~-~~~~~l~~ll~--~~dvl~~n~~E~~~l~~~~~~--------~~-------~~l 209 (312)
+...++.+++.+.++++||...... +..+..+++++ .++|+++|..|+..|.+.... +. +.+
T Consensus 73 i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~l 152 (263)
T PRK09355 73 MLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAALAGEAAETKGVDSTDGSADAVEIAKAA 152 (263)
T ss_pred HHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHH
Confidence 4445555677899999999863221 22233445554 689999999999999986320 11 123
Q ss_pred hh-cCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhe
Q psy8856 210 NE-QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEI 284 (312)
Q Consensus 210 ~~-g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~ 284 (312)
.+ ....+++|-+. -+++++ ++.+.++.-... ..+.+|+||++.|.+.+.++.|.++.+|+..|...-+.+-
T Consensus 153 a~~~~~~VvvkG~~--d~I~~~-~~~~~~~~g~~~-~~~v~GtGc~L~~~iaa~lA~g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 153 AKKYGTVVVVTGEV--DYITDG-ERVVSVHNGHPL-MTKVTGTGCLLSAVVAAFAAVEKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHHhCCEEEEECCC--cEEEeC-CEEEEEeCCCcc-cCCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33 34467777443 244554 555666532222 4566899999999999999999999999998887665554
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.65 E-value=6.4e-07 Score=76.69 Aligned_cols=135 Identities=18% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCcccCC-HHHHHHHhh--cccEEEeCHHHHHHhhcCCC----C----CH-------H
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSLSMFT-KEELIKIIK--KSSYIIVNEYESKLLVSKTS----L----SL-------Q 207 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~l~~ll~--~~dvl~~n~~E~~~l~~~~~----~----~~-------~ 207 (312)
+.+...++.+++.+.|+++||........ .+..+++++ .++++++|..|++.|++... . .. +
T Consensus 66 ~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~ 145 (249)
T TIGR00694 66 EAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQ 145 (249)
T ss_pred HHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHH
Confidence 44555566677779999999986322211 223356776 47999999999999998531 0 11 1
Q ss_pred HHhh-cCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhe
Q psy8856 208 KINE-QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEI 284 (312)
Q Consensus 208 ~l~~-g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~ 284 (312)
.+.+ ....|++|-+ .- +++++ ++.+.+...... .-..+|.||++.+.+.+.+++|.++.+|+..|...-..+.
T Consensus 146 ~la~~~~~~VllkG~-~D-~i~~~-~~~~~~~~g~~~-~~~~~GtGc~LssaIaa~LA~g~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 146 QAAQKYGTVVVITGE-VD-YVSDG-TSVYTIHNGTEL-LGKITGSGCLLGSVVAAFCAVEEDPLDAAISACLLYKIAG 219 (249)
T ss_pred HHHHHhCCEEEEECC-Cc-EEEeC-CEEEEECCCChH-HhCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2333 2335666544 32 45555 665554432211 1234799999999999999999999999999875544443
No 78
>KOG2598|consensus
Probab=97.82 E-value=0.00011 Score=65.45 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=91.0
Q ss_pred hcCCcEEEcCCCCc----ccCC----HHHHHHHhhcccEEEeCHHHHHHhhcCCCC------CHHH-------Hhh-cCC
Q psy8856 157 KLKIPFIFDPGQSL----SMFT----KEELIKIIKKSSYIIVNEYESKLLVSKTSL------SLQK-------INE-QVK 214 (312)
Q Consensus 157 ~~~~~v~~D~~~~~----~~~~----~~~l~~ll~~~dvl~~n~~E~~~l~~~~~~------~~~~-------l~~-g~~ 214 (312)
.+-..+++||.--. .+-. .-..++++|.+||+.+|-.|+-.|.+.... +..+ +.+ |.+
T Consensus 117 ~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk 196 (523)
T KOG2598|consen 117 FNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFDIAKDAAKIHKLGPK 196 (523)
T ss_pred hcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHHHHHHHHHHHhcCcc
Confidence 34567888987311 1111 223678999999999999999999985322 1222 233 899
Q ss_pred EEEEeeCCCc----------------eEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy8856 215 VLIVTRGELG----------------SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSL 278 (312)
Q Consensus 215 ~vvvt~G~~G----------------~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a 278 (312)
.|+++.|.=. ..++....+.+.++.+.+. ...+-|.|.+..+++..-|+.|.|+.+|+..|..
T Consensus 197 ~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~-t~~tHGtgCtLaSAIASnLA~g~sl~qAv~~ai~ 275 (523)
T KOG2598|consen 197 NVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLA-TKHTHGTGCTLASAIASNLARGYSLLQAVQGAIE 275 (523)
T ss_pred eEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccc-cccccCccchHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999987532 2233331567788888776 7899999999999999999999999999998876
Q ss_pred Hhchhe
Q psy8856 279 MGSTEI 284 (312)
Q Consensus 279 ~aa~~~ 284 (312)
.--.++
T Consensus 276 yvq~Ai 281 (523)
T KOG2598|consen 276 YVQNAI 281 (523)
T ss_pred HHHHHH
Confidence 544333
No 79
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.80 E-value=0.00069 Score=57.30 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCcc-cCCHHHHHHHh--hcccEEEeCHHHHHHhhcCCCC----C-----------HH
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSLS-MFTKEELIKII--KKSSYIIVNEYESKLLVSKTSL----S-----------LQ 207 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~l~~ll--~~~dvl~~n~~E~~~l~~~~~~----~-----------~~ 207 (312)
+......+.+++.++|+++||..-.. .+-.+...+++ .+.++++.|..|...|.+.... + .+
T Consensus 66 ~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~~~~kGVDs~~~~~~~~~~a~ 145 (246)
T PF02110_consen 66 EAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAGEDSKAKGVDSGDSDEDAIEAAK 145 (246)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCCCCSCSSSSSCGSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcCCCCCCcCcCCcchHHHHHHH
Confidence 56667778888999999999987332 22234566777 4888999999999999986532 1 12
Q ss_pred HHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhc
Q psy8856 208 KINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGS 281 (312)
Q Consensus 208 ~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa 281 (312)
++.++...+|+-.|+.-. +.+. .+.+.++.-..- .-.-||.|+...+-+.+.+....++.+++..|...-.
T Consensus 146 ~lA~k~~~vVvvTG~~D~-Isdg-~~~~~i~nG~~~-l~~itGtGC~lgaliaaf~av~~d~~~aa~~a~~~~~ 216 (246)
T PF02110_consen 146 QLAQKYNCVVVVTGEVDY-ISDG-NRVYRIPNGSPL-LSKITGTGCMLGALIAAFLAVAEDPLEAAVAAVALYG 216 (246)
T ss_dssp HHHHHTTSEEEEESSSEE-EEES-SCEEEECSSSGG-GGGSTTHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEecCCcE-EECC-CeEEEeCCCChH-hcceeccchHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 345577778877887644 4444 566666554322 4467999998877777777776777777766554433
No 80
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.72 E-value=0.00083 Score=56.38 Aligned_cols=135 Identities=18% Similarity=0.143 Sum_probs=89.5
Q ss_pred ECCCChHHHHHHHHHHHhcCCcEEEcCCCCccc-CCHHHHHHHhhc--ccEEEeCHHHHHHhhcCCCC----C-------
Q psy8856 140 ISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSM-FTKEELIKIIKK--SSYIIVNEYESKLLVSKTSL----S------- 205 (312)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~-~~~~~l~~ll~~--~dvl~~n~~E~~~l~~~~~~----~------- 205 (312)
++....+.+..+.+.+++.+.|+++||..-.-. +-.+...+++.+ .++++.|..|...|.+.... +
T Consensus 66 L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~~~~~kGVDa~~~~~~ 145 (265)
T COG2145 66 LSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAGEAGGGKGVDAGDGAAD 145 (265)
T ss_pred CChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcccccccccccccchhh
Confidence 345556778888889999999999999863222 223445677764 68999999999999965432 1
Q ss_pred H----HHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCC-HHHHHHHHH
Q psy8856 206 L----QKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD-WYTTGRLSS 277 (312)
Q Consensus 206 ~----~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~-~~~a~~~a~ 277 (312)
. +.+.+....+++-.|+.-. +.++ .+.+.+..-..- .-.-||+|+...|-..+.++...+ +.+|+.-|.
T Consensus 146 ~~~~a~~~A~~~~~vvvvTG~vD~-Isdg-~~~~~i~nG~pl-l~~ItGtGCllgav~aaF~av~~d~~~~A~~~A~ 219 (265)
T COG2145 146 AIEAAKKAAQKYGTVVVVTGEVDY-ISDG-TRVVVIHNGSPL-LGKITGTGCLLGAVVAAFLAVEKDPLLDAAAEAC 219 (265)
T ss_pred HHHHHHHHHHHhCcEEEEECCeeE-EEcC-CeEEEEECCCcH-HhhhhccccHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 1223456677777776543 4444 566655544322 446789999887777777777777 466655543
No 81
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.62 E-value=0.0021 Score=58.94 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCcccccCCchHHHHHHHHHhCCCceE-EE-EeecChHHHHHHHHHcCC----------------------ccceeeecC
Q psy8856 40 PTMKKEYGGCAGNIAYNLKLLNGNPLI-VS-ILGKDGSSYLKHLKYLGI----------------------SNKYIQKIN 95 (312)
Q Consensus 40 ~~~~~~~GG~~~n~a~~l~~lG~~~~~-~~-~vG~d~~~i~~~l~~~gi----------------------~~~~~~~~~ 95 (312)
...+.+.||.+..+|..|+.+|.++.+ .+ .++ +...+.+...+| +-+.++..-
T Consensus 84 ~~~~~rmGGnAgimAn~la~lg~~~Vi~~~~~ls---k~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~If 160 (453)
T PRK14039 84 DNSEIRMGGNAGIMANVLSELGASRVVPNVAVPS---KTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVF 160 (453)
T ss_pred cCceEEeCChHHHHHHHHHhcCCceEEEcCCCCC---HHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEE
Confidence 344678999999999999999999654 33 232 222222211111 111111111
Q ss_pred CcccceEEE-----EEecCCCeeEEEeCCccccC-CccccCC-----cCCceEEEECCCC------------hHHH---H
Q psy8856 96 SMFTAQCFI-----VTDVNNNQITIFHPGAMQLS-YDDNCIN-----NADIKIAIISPDN------------CCNM---I 149 (312)
Q Consensus 96 ~~~t~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~------------~~~~---~ 149 (312)
+.+.+..+. ..-+..+|++..+...+..+ ..+.+.. ....+.+++++.. .+.+ .
T Consensus 161 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~ 240 (453)
T PRK14039 161 DFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSL 240 (453)
T ss_pred EeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHH
Confidence 222222221 22233345444443333322 1111111 2357888777531 1222 2
Q ss_pred HHHHHH--HhcCCcEEEcCCCCcccCC-HHHHHHHhhcccEEEeCHHHHHHhhcCCC
Q psy8856 150 KHIKKI--LKLKIPFIFDPGQSLSMFT-KEELIKIIKKSSYIIVNEYESKLLVSKTS 203 (312)
Q Consensus 150 ~~~~~~--~~~~~~v~~D~~~~~~~~~-~~~l~~ll~~~dvl~~n~~E~~~l~~~~~ 203 (312)
+.++.. ...+.++-+.........- ...+..+++++|.+-+||+|+..+....+
T Consensus 241 ~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g 297 (453)
T PRK14039 241 AQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHG 297 (453)
T ss_pred HHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcc
Confidence 222332 2245677777765432221 23355788999999999999999987644
No 82
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.56 E-value=0.0032 Score=59.51 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=87.2
Q ss_pred CceEEEECCCCh--HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHH--HhhcccEEEeCHHHHHHhhcCCCCC----
Q psy8856 134 DIKIAIISPDNC--CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIK--IIKKSSYIIVNEYESKLLVSKTSLS---- 205 (312)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~--ll~~~dvl~~n~~E~~~l~~~~~~~---- 205 (312)
.++.+.+.+-.. +...++++.+++.+.++++|+..-. .+.. ......||.+|..|++.|++.....
T Consensus 320 ~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~------ll~~~~~~~~~~VLTPh~gE~~rL~~~~~~~v~~~ 393 (508)
T PRK10565 320 WADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALN------LLAINPDKRHNRVITPHPGEAARLLGCSVAEIESD 393 (508)
T ss_pred cCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHH------HHhhCccccCCeEECCCHHHHHHHhCCChhhhhhh
Confidence 456666665432 3345556666777899999996411 0110 0112469999999999999853221
Q ss_pred ----HHHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHHhc
Q psy8856 206 ----LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGS 281 (312)
Q Consensus 206 ----~~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa 281 (312)
.+++.+....++|-.|..- ++++++++.+..+.-.. ..-+.|.||.+.+-+.+.+++|.++.+|+..|...=+
T Consensus 394 ~~~~a~~~a~~~~~~vvlKG~~~-iI~~~~~~~~~~~~G~~--~ma~~GsGDvLaGiIaalla~g~~~~~Aa~~a~~lhg 470 (508)
T PRK10565 394 RLLSARRLVKRYGGVVVLKGAGT-VIAAEPDALAIIDVGNA--GMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAHG 470 (508)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCc-EEEcCCceEEEECCCCC--CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1223344444555566543 45554144444444332 4567999999998888888999999999988875443
Q ss_pred hh
Q psy8856 282 TE 283 (312)
Q Consensus 282 ~~ 283 (312)
.+
T Consensus 471 ~A 472 (508)
T PRK10565 471 AA 472 (508)
T ss_pred HH
Confidence 33
No 83
>KOG2599|consensus
Probab=97.51 E-value=0.0014 Score=55.13 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcC--CcEEEcCCC--CcccCCHHHH----HH-HhhcccEEEeCHHHHHHhhcCCCCCHHH-------H
Q psy8856 146 CNMIKHIKKILKLK--IPFIFDPGQ--SLSMFTKEEL----IK-IIKKSSYIIVNEYESKLLVSKTSLSLQK-------I 209 (312)
Q Consensus 146 ~~~~~~~~~~~~~~--~~v~~D~~~--~~~~~~~~~l----~~-ll~~~dvl~~n~~E~~~l~~~~~~~~~~-------l 209 (312)
..+.+.+++.++.+ ...++||.. ..+++-++.+ ++ +.+.+|++.+|.-|++.|+|..--+.++ +
T Consensus 97 ~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~l 176 (308)
T KOG2599|consen 97 QKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKL 176 (308)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHH
Confidence 55666667776654 445578874 2333433332 23 4456999999999999999876554433 3
Q ss_pred hh-cCCEEEEeeCCC----c-eEEEe---cCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcC---CCHHHHHHHH
Q psy8856 210 NE-QVKVLIVTRGEL----G-SDIFL---NNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINN---LDWYTTGRLS 276 (312)
Q Consensus 210 ~~-g~~~vvvt~G~~----G-~~~~~---~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g---~~~~~a~~~a 276 (312)
++ +++.+|||...- | .+++- ...+.+.+.-|++. ---+|.||-|.|=+++-+..- .++..++..+
T Consensus 177 hq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~--~~FtGTGDLfsaLLla~~~~~~~~~~l~~a~e~~ 253 (308)
T KOG2599|consen 177 HQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKID--GVFTGTGDLFSALLLAWLHESPDNDDLSKAVEQV 253 (308)
T ss_pred HHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccc--eEEecccHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 33 799999996543 3 22222 22455555555543 346799999998777666544 3444444443
No 84
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.43 E-value=0.0073 Score=51.38 Aligned_cols=163 Identities=12% Similarity=0.110 Sum_probs=98.4
Q ss_pred cCCceEEEECCCCh--HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHH---HhhcccEEEeCHHHHHHhhcCCCC--
Q psy8856 132 NADIKIAIISPDNC--CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIK---IIKKSSYIIVNEYESKLLVSKTSL-- 204 (312)
Q Consensus 132 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~---ll~~~dvl~~n~~E~~~l~~~~~~-- 204 (312)
+++++.+.+.|-.- +...++++...+...++++|...- ..+.. ....--|+.|+.-|++.|++....
T Consensus 65 ~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL------~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~~ 138 (242)
T PF01256_consen 65 LEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADAL------NLLAENPKKRNAPVILTPHPGEFARLLGKSVEIQ 138 (242)
T ss_dssp HCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHH------HCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHHC
T ss_pred hccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHH------HHHHhccccCCCCEEECCCHHHHHHHhCCcccch
Confidence 34678887876432 344456666666688899998531 01111 223455799999999999997652
Q ss_pred -C----HHHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy8856 205 -S----LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLM 279 (312)
Q Consensus 205 -~----~~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~ 279 (312)
+ .+++.+..+.+++-.|..-. +++++++.+..+.-.. -.-+-|.||.+++-+...++++.++.+|+..|...
T Consensus 139 ~~~~~~a~~~a~~~~~~vvLKG~~t~-I~~p~~~~~~n~~gn~--~la~gGsGDvLaGii~~llaq~~~~~~Aa~~av~l 215 (242)
T PF01256_consen 139 EDRIEAAREFAKEYGAVVVLKGAVTI-IASPGGRVYVNPTGNP--GLATGGSGDVLAGIIAGLLAQGYDPFEAACLAVYL 215 (242)
T ss_dssp CSHHHHHHHHHHHHTSEEEEESTSSE-EEEETSEEEEE----G--GGSSTTHHHHHHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCcEEEEeCCCcE-EEecCcceeEeCCCCC--CCCCCCcccHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 23445556667777777655 5554266666666542 46788999999888888889999999999998766
Q ss_pred hchheeeccCCCCC-CChHHHHHHH
Q psy8856 280 GSTEISHQGGQKHC-PSLSEIDQRF 303 (312)
Q Consensus 280 aa~~~~~~g~~~~~-~~~~ev~~~~ 303 (312)
=+.+-.......+. ....++.+.+
T Consensus 216 Hg~Ag~~~~~~~~~~~~a~dli~~i 240 (242)
T PF01256_consen 216 HGRAGDLAAEKYGRGMLASDLIDNI 240 (242)
T ss_dssp HHHHHHHHCTTCSSC--HHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCcHHHHHHhc
Confidence 54443332222211 3455555543
No 85
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.41 E-value=0.003 Score=58.07 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=30.9
Q ss_pred hcCCcEEEcCCCCcccCC-HHHHHHHhhcccEEEeCHHHHHHhhcC
Q psy8856 157 KLKIPFIFDPGQSLSMFT-KEELIKIIKKSSYIIVNEYESKLLVSK 201 (312)
Q Consensus 157 ~~~~~v~~D~~~~~~~~~-~~~l~~ll~~~dvl~~n~~E~~~l~~~ 201 (312)
..+.++-+.........- ...+..+++++|-+-+|++|+..+...
T Consensus 262 ~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~ 307 (463)
T PRK03979 262 NKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEIANILNV 307 (463)
T ss_pred CCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHHHHHHHH
Confidence 346777777765433221 233457889999999999999987643
No 86
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.23 E-value=0.013 Score=53.70 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=34.1
Q ss_pred HHHHHHHHh-cCCcEEEcCCCCcccCC-HHHHHHHhhcccEEEeCHHHHHHhhc
Q psy8856 149 IKHIKKILK-LKIPFIFDPGQSLSMFT-KEELIKIIKKSSYIIVNEYESKLLVS 200 (312)
Q Consensus 149 ~~~~~~~~~-~~~~v~~D~~~~~~~~~-~~~l~~ll~~~dvl~~n~~E~~~l~~ 200 (312)
.+.++..+. .+.++-+.........- ...+..+++++|-+-+|++|+..+..
T Consensus 239 ~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~ 292 (446)
T TIGR02045 239 KEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEIANVLS 292 (446)
T ss_pred HHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 334444433 56777777765332221 23345788999999999999999873
No 87
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.21 E-value=0.012 Score=54.03 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=44.3
Q ss_pred CCceEEEECCCC-------h---HHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHHHHHhhc
Q psy8856 133 ADIKIAIISPDN-------C---CNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVS 200 (312)
Q Consensus 133 ~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E~~~l~~ 200 (312)
...+.+++++.. . +...+.++..++.++++-+.........-.+.+.++++++|-+-+|++|+..+..
T Consensus 223 ~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~ 300 (453)
T PRK14038 223 KKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIME 300 (453)
T ss_pred cCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccchHHHHHHHHhhCccccccccCHHHHHHHHH
Confidence 467788887642 1 2233333343445777888777543322234455688999999999999999985
No 88
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=96.23 E-value=0.071 Score=49.57 Aligned_cols=69 Identities=23% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCceEEEECCC-----------Ch----HHHHHHHHHHH-hcCCcEEEcCCCCcccCC-HHHHHHHhhcccEEEeCHHHH
Q psy8856 133 ADIKIAIISPD-----------NC----CNMIKHIKKIL-KLKIPFIFDPGQSLSMFT-KEELIKIIKKSSYIIVNEYES 195 (312)
Q Consensus 133 ~~~~~~~~~~~-----------~~----~~~~~~~~~~~-~~~~~v~~D~~~~~~~~~-~~~l~~ll~~~dvl~~n~~E~ 195 (312)
...+.+++++. .+ +.+.+.++.++ ..+.++-+.........- ..-+..+++++|.+-+||+|+
T Consensus 208 ~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL 287 (444)
T PF04587_consen 208 FKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQEL 287 (444)
T ss_dssp TT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHH
T ss_pred cCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHH
Confidence 45788877742 12 22233334445 578888888876433221 233557889999999999999
Q ss_pred HHhhcC
Q psy8856 196 KLLVSK 201 (312)
Q Consensus 196 ~~l~~~ 201 (312)
..+...
T Consensus 288 ~~l~~~ 293 (444)
T PF04587_consen 288 ANLLSV 293 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998653
No 89
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.8 Score=39.90 Aligned_cols=168 Identities=11% Similarity=0.117 Sum_probs=91.4
Q ss_pred CCceEEEECCCCh--HHHHHHHHHHHhcC-CcEEEcCCCCcccCCHHHHHHHhhc-ccEEEeCHHHHHHhhcCCCCC---
Q psy8856 133 ADIKIAIISPDNC--CNMIKHIKKILKLK-IPFIFDPGQSLSMFTKEELIKIIKK-SSYIIVNEYESKLLVSKTSLS--- 205 (312)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~v~~D~~~~~~~~~~~~l~~ll~~-~dvl~~n~~E~~~l~~~~~~~--- 205 (312)
..++.+.+.+-.- +...++++..-+.. +++++|...-..+ .....+... .-|+.++.-|++.|++....+
T Consensus 100 ~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~l---a~~~~~~~~~~~VlTPH~gEf~rL~g~~~~~~~~ 176 (284)
T COG0063 100 ERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLL---AELPDLLDERKVVLTPHPGEFARLLGTEVDEIEV 176 (284)
T ss_pred ccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHH---HhCcccccCCcEEECCCHHHHHHhcCCccccccc
Confidence 3567777775432 33445555554445 8999999642100 011122222 267899999999999843221
Q ss_pred -----HHHHhhcCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCC-CHHHHHHHHHHH
Q psy8856 206 -----LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL-DWYTTGRLSSLM 279 (312)
Q Consensus 206 -----~~~l~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~-~~~~a~~~a~a~ 279 (312)
.+++.+....+||=.|..-. +.+++++.+..+.-.. -.-+=|.||+.++-+.+-++++. ++.+|+..|..+
T Consensus 177 ~r~~~a~~~a~~~~~vvVLKG~~tv-I~~~~g~~~~n~~G~~--~ma~GGtGDvLaGii~alLAq~~~~~~~Aa~~g~~~ 253 (284)
T COG0063 177 DRLEAARELAAKYGAVVVLKGAVTV-IADPDGEVFVNPTGNP--GMATGGTGDVLAGIIGALLAQGPADPLEAAAAGAWL 253 (284)
T ss_pred chHHHHHHHHHHcCCEEEEeCCCCE-EEcCCCcEEEcCCCCH--HhccCcchHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 23455678888888887655 5554245555544332 23456899997655555555551 455666555443
Q ss_pred hchheeeccCCCCCCChHHHHHHHHHh
Q psy8856 280 GSTEISHQGGQKHCPSLSEIDQRFKEA 306 (312)
Q Consensus 280 aa~~~~~~g~~~~~~~~~ev~~~~~~~ 306 (312)
=+.+-.......+-.+..++.+.+.+.
T Consensus 254 h~~ag~la~~~~g~~~a~Dl~~~ip~~ 280 (284)
T COG0063 254 HGRAGELAAKKHGGLTATDLIEAIPRA 280 (284)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 332222211111124666666655544
No 90
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=93.87 E-value=0.21 Score=46.31 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=79.6
Q ss_pred cccccCCchHHHHHHHHHhCC-CceEEEEeecC-hHHHHH--HHHHcC----CccceeeecCCcccceEEE-EEecCCCe
Q psy8856 42 MKKEYGGCAGNIAYNLKLLNG-NPLIVSILGKD-GSSYLK--HLKYLG----ISNKYIQKINSMFTAQCFI-VTDVNNNQ 112 (312)
Q Consensus 42 ~~~~~GG~~~n~a~~l~~lG~-~~~~~~~vG~d-~~~i~~--~l~~~g----i~~~~~~~~~~~~t~~~~~-~~~~~~~~ 112 (312)
.+...||.+.-+|..++.+|. +|.+.+..... -..+.. ...-.+ .+-+.++..-+.+.+..+- ...+..+|
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~~~aPraNR 180 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQAELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGDFVAPRANR 180 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcHHHHHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecceEcCCCCe
Confidence 357899999999999999999 88877775543 111211 000000 1111111111122222221 12233345
Q ss_pred eEEEeCCccccC-CccccCCc-C-CceEEEECCCC--------hHHHHHHHHHH----H--hcCCcEEEcCCCCcccCC-
Q psy8856 113 ITIFHPGAMQLS-YDDNCINN-A-DIKIAIISPDN--------CCNMIKHIKKI----L--KLKIPFIFDPGQSLSMFT- 174 (312)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~--------~~~~~~~~~~~----~--~~~~~v~~D~~~~~~~~~- 174 (312)
++..+...+... ..+.+..+ . ..+.+++++.. .....+.++.+ + +++.++=+.........-
T Consensus 181 fI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~~d~~l~ 260 (445)
T cd01938 181 FIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELASTVDEELR 260 (445)
T ss_pred EEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecccccHHHH
Confidence 544333222211 11122222 2 36777777531 11222222222 1 133666666665322211
Q ss_pred HHHHHHHhhcccEEEeCHHHHHHhhcC
Q psy8856 175 KEELIKIIKKSSYIIVNEYESKLLVSK 201 (312)
Q Consensus 175 ~~~l~~ll~~~dvl~~n~~E~~~l~~~ 201 (312)
...+..+++++|-+-+||+|+..+...
T Consensus 261 ~~i~~~ilp~VDSlGmNEqEL~~l~~~ 287 (445)
T cd01938 261 EEILHEVVPYVDSLGLNEQELANLLQV 287 (445)
T ss_pred HHHHHHhcccccccccCHHHHHHHHHH
Confidence 233557889999999999999999743
No 91
>KOG3974|consensus
Probab=93.21 E-value=0.77 Score=38.91 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=89.1
Q ss_pred CCceEEEECCC------ChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHH-HHHHhh-cc-cEEEeCHHHHHHhhcCCC
Q psy8856 133 ADIKIAIISPD------NCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEE-LIKIIK-KS-SYIIVNEYESKLLVSKTS 203 (312)
Q Consensus 133 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~-l~~ll~-~~-dvl~~n~~E~~~l~~~~~ 203 (312)
.....+.+.|- ....+.+++++++++++|+++|...- |-.++ ...++. +. -|+.+|.-|+..|++...
T Consensus 100 ~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL---~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 100 QRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGL---WLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred hheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCce---EehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 45566666543 23667788899999999999999753 32222 222332 33 358999999999998632
Q ss_pred C---CH---HHHhh-cCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHH----cCCCHHHH
Q psy8856 204 L---SL---QKINE-QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGII----NNLDWYTT 272 (312)
Q Consensus 204 ~---~~---~~l~~-g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~----~g~~~~~a 272 (312)
. +. ..|.. -....++-.|+.-.++..+ .+....+..-. ..-.=|=||...+.+...++ ...++.++
T Consensus 177 ~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~-~ev~~~s~eGs--~kRcGGQGDiLaGsla~fl~w~k~~~~e~~~~ 253 (306)
T KOG3974|consen 177 DKVDSHSQMQHLAAELMNVTVVQKGESDKILSPD-SEVRVCSTEGS--LKRCGGQGDILAGSLATFLSWAKLLSGEQDSA 253 (306)
T ss_pred ccccchHHHHHHHHHhcCeEEEEecCCceeeCCC-CeeEEccCCCC--ccccCCCcchhhhHHHHHHHHHHhccCCccch
Confidence 1 11 22332 2446678888877644444 66655554322 34566889998887755432 23344455
Q ss_pred HHHHHHHhchheeec
Q psy8856 273 GRLSSLMGSTEISHQ 287 (312)
Q Consensus 273 ~~~a~a~aa~~~~~~ 287 (312)
+-.|..+++..+++.
T Consensus 254 ~~~a~~a~s~~vr~a 268 (306)
T KOG3974|consen 254 AFLAAVAGSIMVRRA 268 (306)
T ss_pred hhhhhhhhHHHHHHH
Confidence 555555555444443
No 92
>KOG3361|consensus
Probab=72.58 E-value=5.5 Score=29.97 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=46.5
Q ss_pred CCCCchhhhHHH-HHHHHHcCCCHHHHHHHHHHHhchheeeccCC--CCCCChHHHHHHHHHhhccc
Q psy8856 247 DPTGCGDAFRSG-VLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ--KHCPSLSEIDQRFKEAFGYR 310 (312)
Q Consensus 247 dt~GaGDaf~ag-~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~--~~~~~~~ev~~~~~~~~~~~ 310 (312)
.|.|||-+..+. +..-+.+|++++|++.+-|.-=|-.++-+.-. ++++-++.+..-++++..++
T Consensus 85 KTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIKaAikdyk~Kq 151 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKEKQ 151 (157)
T ss_pred eecccchHhhhhHHHHHHHccccHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 589999887655 45568999999999999888777666654322 24666777777777766544
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=58.83 E-value=52 Score=27.40 Aligned_cols=64 Identities=8% Similarity=0.134 Sum_probs=47.0
Q ss_pred eEEEECCCC----hHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEE-----EeCHHHHHHhhcCC
Q psy8856 136 KIAIISPDN----CCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYI-----IVNEYESKLLVSKT 202 (312)
Q Consensus 136 ~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl-----~~n~~E~~~l~~~~ 202 (312)
..+.+|+.- .+.+.++++.+++.|+.+.+|-+... ..+.++++++.+|.+ .++.+.-+.++|..
T Consensus 40 gGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~---~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~ 112 (213)
T PRK10076 40 GGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA---PASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN 112 (213)
T ss_pred CEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC---CHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC
Confidence 455566543 36778999999999999999998743 356778888888865 34666677777754
No 94
>KOG0174|consensus
Probab=55.85 E-value=5.1 Score=32.31 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=39.4
Q ss_pred CCCCchhhhHHHHHHH-HHcCCCHHHHHHHHHHHhchheeeccCCCC
Q psy8856 247 DPTGCGDAFRSGVLFG-IINNLDWYTTGRLSSLMGSTEISHQGGQKH 292 (312)
Q Consensus 247 dt~GaGDaf~ag~~~~-l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~ 292 (312)
---|.|-+|+=||+=+ +..|++++|+.+|-..+-++++.+-|.+.+
T Consensus 145 aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGG 191 (224)
T KOG0174|consen 145 AIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGG 191 (224)
T ss_pred eeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3347999999888765 577999999999999999999999998875
No 95
>PRK14057 epimerase; Provisional
Probab=53.37 E-value=84 Score=26.98 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=66.8
Q ss_pred HHhCCCceEEEEeecC-h--HHHHHHHHHcCCccceeeecCCcccceEEE------EEecCCCeeEEEeCCccccCCccc
Q psy8856 58 KLLNGNPLIVSILGKD-G--SSYLKHLKYLGISNKYIQKINSMFTAQCFI------VTDVNNNQITIFHPGAMQLSYDDN 128 (312)
Q Consensus 58 ~~lG~~~~~~~~vG~d-~--~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 128 (312)
+.|.--....|.+.-| + ..-++.+.+.|++.-++.+.++...+-... .+. . ... +....+- ..++.
T Consensus 15 ~~~~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~-~-~~p--~DvHLMV-~~P~~ 89 (254)
T PRK14057 15 ALLASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLP-Q-TFI--KDVHLMV-ADQWT 89 (254)
T ss_pred HHhcCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhc-c-CCC--eeEEeee-CCHHH
Confidence 4454444555667777 3 355788888999988777766644332100 000 0 100 0111110 01111
Q ss_pred c-CC--cCCceEEEECCCChHHHHHHHHHHHhcCC-----------cEEEcCCCCcccCCHHHHHHHhhcccE
Q psy8856 129 C-IN--NADIKIAIISPDNCCNMIKHIKKILKLKI-----------PFIFDPGQSLSMFTKEELIKIIKKSSY 187 (312)
Q Consensus 129 ~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~D~~~~~~~~~~~~l~~ll~~~dv 187 (312)
. .. -.+++.+.+.-+......+.+...++.|. -+.++|... .+.++.+++.+|+
T Consensus 90 ~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp-----~e~i~~~l~~vD~ 157 (254)
T PRK14057 90 AAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATP-----LDVIIPILSDVEV 157 (254)
T ss_pred HHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCC-----HHHHHHHHHhCCE
Confidence 1 11 13677776666544566777788888774 577777653 4677889999996
No 96
>PHA00438 hypothetical protein
Probab=52.11 E-value=12 Score=25.33 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=14.8
Q ss_pred CCCchhhhHHHHHHHHH
Q psy8856 248 PTGCGDAFRSGVLFGII 264 (312)
Q Consensus 248 t~GaGDaf~ag~~~~l~ 264 (312)
-.|..++|+|||++++.
T Consensus 46 ~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 37899999999999974
No 97
>KOG1145|consensus
Probab=49.52 E-value=1.8e+02 Score=28.08 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=59.5
Q ss_pred HhCCCceEEEEeec-C-hH-HHHHHHHHcCCccceeeecCC---cccceEEEEEecCCCeeEEEeCCccccCCccccCC-
Q psy8856 59 LLNGNPLIVSILGK-D-GS-SYLKHLKYLGISNKYIQKINS---MFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCIN- 131 (312)
Q Consensus 59 ~lG~~~~~~~~vG~-d-~~-~i~~~l~~~gi~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (312)
.|--++-.++..|. | |. .+++.|+...|-- .+.| ...+-+.+.+. .|++.+++...-...|..-.-.-
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA----~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA 222 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA----GEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGA 222 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceeh----hhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccC
Confidence 44567788888887 5 65 5789998865432 1122 23344445455 66666655421111121111111
Q ss_pred -cCCceEEEE--CCCChHHHHHHHHHHHhcCCcEEEcCC
Q psy8856 132 -NADIKIAII--SPDNCCNMIKHIKKILKLKIPFIFDPG 167 (312)
Q Consensus 132 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~D~~ 167 (312)
+.++-++.+ ++.......+.++.++..+.++++-++
T Consensus 223 ~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAin 261 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAIN 261 (683)
T ss_pred ccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEe
Confidence 223333333 345667788999999999999998776
No 98
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=49.08 E-value=42 Score=28.71 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=41.2
Q ss_pred chhhhHHHHHHHHHcCCCHHHHHHHHHHHhch-------heeeccCCCCCCChHHHHHHHHHh
Q psy8856 251 CGDAFRSGVLFGIINNLDWYTTGRLSSLMGST-------EISHQGGQKHCPSLSEIDQRFKEA 306 (312)
Q Consensus 251 aGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~-------~~~~~g~~~~~~~~~ev~~~~~~~ 306 (312)
.||.+++-+..+...|.++++||+.++.==.. .+...|......+.+|++.++++.
T Consensus 185 lGDlLFalvnlAr~~giDpE~ALr~a~~KF~~Rf~~~E~~~~~~g~~~~~~slee~~~lW~~a 247 (248)
T TIGR00444 185 MGDLLFATVNLARHLKTDAEIALQKANEKFERRFREVERIVAARGLELTGVDLEEMEELWQQV 247 (248)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHc
Confidence 79999999999999999999999877642221 122335444467888998887753
No 99
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=45.77 E-value=56 Score=24.50 Aligned_cols=43 Identities=26% Similarity=0.150 Sum_probs=35.9
Q ss_pred ccccCCchHHHHHHHHHhCCCceEEEEeecChHHHHHHHHHcCCcc
Q psy8856 43 KKEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISN 88 (312)
Q Consensus 43 ~~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~~gi~~ 88 (312)
.....|.+.-++-.|...|.++.+++.+| +.....|++.||++
T Consensus 47 ~~~~~g~G~~~a~~l~~~gvdvvi~~~iG---~~a~~~l~~~GIkv 89 (121)
T COG1433 47 ASAEKGAGIRIAELLVDEGVDVVIASNIG---PNAYNALKAAGIKV 89 (121)
T ss_pred ccccCcchHHHHHHHHHcCCCEEEECccC---HHHHHHHHHcCcEE
Confidence 34557889999999999999999999988 44567889999986
No 100
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=45.08 E-value=74 Score=27.37 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=47.1
Q ss_pred CceEEEECCCC----hHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEE----EeCHHH-HHHhhcCCC
Q psy8856 134 DIKIAIISPDN----CCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYI----IVNEYE-SKLLVSKTS 203 (312)
Q Consensus 134 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl----~~n~~E-~~~l~~~~~ 203 (312)
..+.+.+++.- .+.+.++++.+++.|..+.+|-+.... .+.++++++.+|.+ +...++ .+.+++...
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~---~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~ 158 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLP---PEALEELLPLLDAVLLDLKAFDDELYRKLTGADN 158 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC---HHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCc
Confidence 45666676543 378899999999999999999997543 44456677767753 444445 777776654
No 101
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=44.39 E-value=43 Score=22.52 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCCceEEEEeec-----C---hHHHHHHHHHcCCccc
Q psy8856 50 AGNIAYNLKLLNGNPLIVSILGK-----D---GSSYLKHLKYLGISNK 89 (312)
Q Consensus 50 ~~n~a~~l~~lG~~~~~~~~vG~-----d---~~~i~~~l~~~gi~~~ 89 (312)
++=+|..|+++|.++.++..-.. | ...+.+.|++.||+..
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 77889999999999999886543 1 3456789999998753
No 102
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=42.57 E-value=20 Score=24.26 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.4
Q ss_pred CCCchhhhHHHHHHHHHc
Q psy8856 248 PTGCGDAFRSGVLFGIIN 265 (312)
Q Consensus 248 t~GaGDaf~ag~~~~l~~ 265 (312)
..|+.|+|++||+.|+..
T Consensus 46 ~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 46 KQGWSESYILGFLAGLQY 63 (77)
T ss_pred HccccHHHHHHHHHHHHH
Confidence 459999999999999854
No 103
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=42.22 E-value=59 Score=22.28 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCceEEEEeecC--hHHHHHHHHHcC
Q psy8856 53 IAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLG 85 (312)
Q Consensus 53 ~a~~l~~lG~~~~~~~~vG~d--~~~i~~~l~~~g 85 (312)
.....+++|.++.|.++-.+| ...+++.|.++|
T Consensus 26 ~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 26 KAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 344568899999999999999 778999999987
No 104
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=42.22 E-value=24 Score=27.31 Aligned_cols=118 Identities=13% Similarity=0.015 Sum_probs=57.1
Q ss_pred CchHHHHHHHHHhCCCceEEEEeecC-hHHH---HHHHHHcCCccceeeecCCcccceEEEEEecCCC-eeEEEeCCccc
Q psy8856 48 GCAGNIAYNLKLLNGNPLIVSILGKD-GSSY---LKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNN-QITIFHPGAMQ 122 (312)
Q Consensus 48 G~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i---~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~ 122 (312)
|.+.-.|+.++...-+-..+..+|+. +... +....++++++..+...++........ ....+. +..........
T Consensus 31 G~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 109 (153)
T PF02775_consen 31 GYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQ-QTPFGGGRFSGVDGKTFP 109 (153)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHH-HHHTTSTCHHSTBTTTST
T ss_pred CCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEEeCCcceEeccc-cccCcCcccccccccccc
Confidence 33777777777765566777888876 3222 344555555554443322210000000 000000 00000000001
Q ss_pred cCCccccCCcCCceEEEECCCChHHHHHHHHHHHhcCCcEEEcC
Q psy8856 123 LSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDP 166 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~ 166 (312)
..+...+...-++....++...++.+.+.++.+.+.+.+.++|+
T Consensus 110 ~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 110 NPDFAALAEAFGIKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp TCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 11111222234666666777667888999988888888888763
No 105
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=39.28 E-value=2.1e+02 Score=24.75 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHhCCCceEEEEeec---ChHHHHHHHHHcC-CccceeeecCCcccceEEEEEecCCCeeEEEeCCcccc
Q psy8856 48 GCAGNIAYNLKLLNGNPLIVSILGK---DGSSYLKHLKYLG-ISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQL 123 (312)
Q Consensus 48 G~~~n~a~~l~~lG~~~~~~~~vG~---d~~~i~~~l~~~g-i~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 123 (312)
|..--++..|..+|+++.-. |+ |-.++.+.+.+.. + .......+. ..+..+.+++.++.+..+.+..-...
T Consensus 46 Gi~~~~~~~L~~~GvDviT~---GNH~~Dkge~~~~i~~~~~~-lrpanyp~~-~pG~g~~i~~~nG~kiaVinl~G~~f 120 (266)
T TIGR00282 46 GLTLKIYEFLKQSGVNYITM---GNHTWFQKLILDVVINQKDL-VRPLNFDTS-FAGKGSLVFEFNGAKIAVTNLQGTSV 120 (266)
T ss_pred CCCHHHHHHHHhcCCCEEEc---cchhccCcHHHHHHhccccc-cccCCCCCC-CCCCCcEEEEECCEEEEEEECCCccc
Confidence 35677888888889986655 44 2223444444321 1 111111111 12222333454555544444311110
Q ss_pred CCccccCCcCCceEEEECCCChHHHHHHHHHHHhcCCcEEEcCCCCc
Q psy8856 124 SYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSL 170 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~ 170 (312)
..+ +. ++ +.-+...++++.+++.--.+++|++...
T Consensus 121 m~~--------~~---~~-~Pf~~~d~~i~~lk~~~d~IIVd~Haea 155 (266)
T TIGR00282 121 NLP--------FK---TT-NPFKVLKELINMLKKDCDLIFVDFHAET 155 (266)
T ss_pred CCc--------cc---cC-CHHHHHHHHHHhhhcCCCEEEEEeCCCC
Confidence 000 00 01 1224556666766665457788888643
No 106
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.87 E-value=52 Score=32.29 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCcEEEcCCCCcccC---------CHHHHHHHhhcccE-EEeCHHHH
Q psy8856 146 CNMIKHIKKILKLKIPFIFDPGQSLSMF---------TKEELIKIIKKSSY-IIVNEYES 195 (312)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~D~~~~~~~~---------~~~~l~~ll~~~dv-l~~n~~E~ 195 (312)
..-.+++++|++.++||++++++...-| ..+.+.+++..-.| ++++++|.
T Consensus 30 pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREER 89 (667)
T COG1331 30 PWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREER 89 (667)
T ss_pred ccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhc
Confidence 4446788899999999999999865544 34567788887777 89998873
No 107
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=37.97 E-value=28 Score=27.64 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcEEEcCCCCcccC---------CHHHHHHHhhcccE-EEeCHHHHHHh
Q psy8856 149 IKHIKKILKLKIPFIFDPGQSLSMF---------TKEELIKIIKKSSY-IIVNEYESKLL 198 (312)
Q Consensus 149 ~~~~~~~~~~~~~v~~D~~~~~~~~---------~~~~l~~ll~~~dv-l~~n~~E~~~l 198 (312)
.++++.|++.+.+|++|+++...-| ..+.+.+++..-.| ++++.+|...+
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdi 86 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDI 86 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHH
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccH
Confidence 4677888899999999999754443 34556667766666 78888776654
No 108
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=36.85 E-value=54 Score=27.04 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=27.0
Q ss_pred CchhhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy8856 250 GCGDAFRSGVLFGIINNLDWYTTGRLSSL 278 (312)
Q Consensus 250 GaGDaf~ag~~~~l~~g~~~~~a~~~a~a 278 (312)
--||.+++-.-+++..|.++++||+.++.
T Consensus 165 E~GDlLFalvn~aR~~~idpE~ALr~an~ 193 (204)
T PRK12333 165 GVAEALWAVVAWARAEGIDPEIALRERTE 193 (204)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 58999999999999999999999998875
No 109
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=36.74 E-value=83 Score=21.47 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCceEEEEeecC--hHHHHHHHHHcC
Q psy8856 52 NIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLG 85 (312)
Q Consensus 52 n~a~~l~~lG~~~~~~~~vG~d--~~~i~~~l~~~g 85 (312)
-.+...+++|-++.|.++-.+| ...+++.|.+.|
T Consensus 23 L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 23 LKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 3455678899999999999998 788999999987
No 110
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.64 E-value=98 Score=26.59 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.6
Q ss_pred CchHHHHHHHHHhCCCceEEEEeecChHHHHHHHH
Q psy8856 48 GCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLK 82 (312)
Q Consensus 48 G~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~ 82 (312)
-.+.+.|..|..+|+++.....+|++-..|.+.++
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~ 55 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALR 55 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHH
Confidence 35888899999999999999999999544444433
No 111
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=33.92 E-value=56 Score=25.98 Aligned_cols=44 Identities=23% Similarity=0.130 Sum_probs=29.5
Q ss_pred ccCCchHHHHHHHHHhCCCceEEEEeecC-----hHHHHHHHHHcCCcc
Q psy8856 45 EYGGCAGNIAYNLKLLNGNPLIVSILGKD-----GSSYLKHLKYLGISN 88 (312)
Q Consensus 45 ~~GG~~~n~a~~l~~lG~~~~~~~~vG~d-----~~~i~~~l~~~gi~~ 88 (312)
.-||.++-+|+.|++.|.+|.++..-..+ ...-++.+++.|+..
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 44888899999999999998885544333 334466777766543
No 112
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=33.21 E-value=58 Score=22.91 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCchHHHHHHHHHhCCCceEEEEeecChHHHHHHHHHcCCcc
Q psy8856 47 GGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISN 88 (312)
Q Consensus 47 GG~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~~gi~~ 88 (312)
+|.+...+..+...|+++.+++.+|.. ....|++.||..
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~---a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP---AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc---HHHHHHHcCCEE
Confidence 466788899999999999999999855 456788889875
No 113
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=31.22 E-value=2.5e+02 Score=23.42 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=50.8
Q ss_pred ceEEEECCCC-hHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHh----h-cccEEEe-----CHHHHHHhhcCCC
Q psy8856 135 IKIAIISPDN-CCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKII----K-KSSYIIV-----NEYESKLLVSKTS 203 (312)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll----~-~~dvl~~-----n~~E~~~l~~~~~ 203 (312)
++++=+.-.. .+...++++.+++.+.+++..-+....-+..+.+..++ . .+|++++ +.++...+....
T Consensus 93 ~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~- 171 (228)
T TIGR01093 93 PDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEIT- 171 (228)
T ss_pred CCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHH-
Confidence 4555555333 34556667777778889998777655555555544333 2 3888775 333444433211
Q ss_pred CCHHHHh--hcCCEEEEeeCCCceE
Q psy8856 204 LSLQKIN--EQVKVLIVTRGELGSD 226 (312)
Q Consensus 204 ~~~~~l~--~g~~~vvvt~G~~G~~ 226 (312)
.++. .....+.+.+|+.|..
T Consensus 172 ---~~~~~~~~~p~i~~~MG~~G~~ 193 (228)
T TIGR01093 172 ---NKVDEHADVPLITMSMGDRGKI 193 (228)
T ss_pred ---HHHHhcCCCCEEEEeCCCCChh
Confidence 1121 2457788999998853
No 114
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.70 E-value=3.7e+02 Score=23.50 Aligned_cols=126 Identities=15% Similarity=-0.015 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHhCCCceEEEEeecC-hH----HHHHHHHHcCCccceeeecCCcccceEEEE--EecCCCeeEEEeCCc
Q psy8856 48 GCAGNIAYNLKLLNGNPLIVSILGKD-GS----SYLKHLKYLGISNKYIQKINSMFTAQCFIV--TDVNNNQITIFHPGA 120 (312)
Q Consensus 48 G~~~n~a~~l~~lG~~~~~~~~vG~d-~~----~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~ 120 (312)
|.+.-+|..++...-+-.++...|+. +. .-+....++++++.++...++....+..-. ..+.+........+.
T Consensus 63 G~alp~AiGaklA~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~ 142 (280)
T PRK11869 63 GRAIPAATAVKATNPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGV 142 (280)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCc
Confidence 55777777777766566778888876 22 224555667888887766554211110000 011111110001111
Q ss_pred c-ccCCccccCCcCCceEEEEC-CCChHHHHHHHHHHHhcCCcEEEcCCCCcccC
Q psy8856 121 M-QLSYDDNCINNADIKIAIIS-PDNCCNMIKHIKKILKLKIPFIFDPGQSLSMF 173 (312)
Q Consensus 121 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~ 173 (312)
. ...+...+....++..+... ...++.+.+.++.+.+.+.+.++|+-.....+
T Consensus 143 ~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~~pC~~~ 197 (280)
T PRK11869 143 FEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKHKGLAIVDIFQPCVSF 197 (280)
T ss_pred cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 1 11122222223455555432 55678888888888887888888876544433
No 115
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=30.12 E-value=34 Score=31.10 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHHHh-cCCcEEEcCCCCcccCC-HHHHHHHhhcccEEEeCHHHHHHhhcCCC
Q psy8856 147 NMIKHIKKILK-LKIPFIFDPGQSLSMFT-KEELIKIIKKSSYIIVNEYESKLLVSKTS 203 (312)
Q Consensus 147 ~~~~~~~~~~~-~~~~v~~D~~~~~~~~~-~~~l~~ll~~~dvl~~n~~E~~~l~~~~~ 203 (312)
...+-++..+. .++++=+.+.......- ..-+..+++.++=+-+|+.|++.+....+
T Consensus 253 ~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE~ElA~vl~vlG 311 (466)
T COG4809 253 RSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDEVELANVLNVLG 311 (466)
T ss_pred HHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHhhC
Confidence 33444455555 67777777765433221 23355688888889999999998876543
No 116
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=30.07 E-value=2.3e+02 Score=21.37 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=23.5
Q ss_pred cCCceEEEECCCChHHHHHHHHHHHhcCCcEE
Q psy8856 132 NADIKIAIISPDNCCNMIKHIKKILKLKIPFI 163 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 163 (312)
++.+++++.+....+....+.+.+++.+++++
T Consensus 87 ~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i 118 (143)
T cd01483 87 LDGVDLVIDAIDNIAVRRALNRACKELGIPVI 118 (143)
T ss_pred hcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 45788888777666666667778888887754
No 117
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.80 E-value=1.7e+02 Score=24.45 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=37.3
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEE
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYI 188 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl 188 (312)
.+++++.+..+..++..+.+.+.++.|++.-+-+++.- .-+.++.+++.+|++
T Consensus 83 agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~T---p~~~i~~~l~~vD~V 135 (220)
T COG0036 83 AGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPAT---PLEALEPVLDDVDLV 135 (220)
T ss_pred hCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCC---CHHHHHHHHhhCCEE
Confidence 35777777776667888899999988876554444321 145678899999974
No 118
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=28.55 E-value=53 Score=22.74 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=33.9
Q ss_pred cccCCchHHHHHHHHHhCCCceEEEEeecChHHHHHHHHHcCCcc
Q psy8856 44 KEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISN 88 (312)
Q Consensus 44 ~~~GG~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~~gi~~ 88 (312)
...+|.+...+..|...|+++.+++.+| ......|.+.||.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~iG---~~~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGIG---EGAFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCSC---HHHHHHHHHTTSEE
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCCC---HHHHHHHHHCCCEE
Confidence 3446778888888888999999999887 55667888999875
No 119
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.49 E-value=2.4e+02 Score=23.81 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred ceEEEEeecC-h--HHHHHHHHHcCCccceeeecCCcccce-EE----E-EEecCCCeeEEEeCCccccCCccc-cCC--
Q psy8856 64 PLIVSILGKD-G--SSYLKHLKYLGISNKYIQKINSMFTAQ-CF----I-VTDVNNNQITIFHPGAMQLSYDDN-CIN-- 131 (312)
Q Consensus 64 ~~~~~~vG~d-~--~~i~~~l~~~gi~~~~~~~~~~~~t~~-~~----~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 131 (312)
...-|.+.-| . ..-++.+.+.|++.-++.+.++...+- .+ + .+. . +..+ ....+- ..++. +..
T Consensus 14 ~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~-~-~~~~--DvHLMv-~~P~~~i~~~~ 88 (228)
T PRK08091 14 PISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFP-T-HCFK--DVHLMV-RDQFEVAKACV 88 (228)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhC-C-CCCE--EEEecc-CCHHHHHHHHH
Confidence 3334556667 2 345788888899887776666543322 11 0 000 0 1000 111110 01111 111
Q ss_pred cCCceEEEECCCChHHHHHHHHHHHhcCC--c--EEEcCCCCcccCCHHHHHHHhhcccE
Q psy8856 132 NADIKIAIISPDNCCNMIKHIKKILKLKI--P--FIFDPGQSLSMFTKEELIKIIKKSSY 187 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--v~~D~~~~~~~~~~~~l~~ll~~~dv 187 (312)
-.+++.+.+.-+......++++..++.|. . +.++|... .+.++.+++.+|.
T Consensus 89 ~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp-----~~~i~~~l~~vD~ 143 (228)
T PRK08091 89 AAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETP-----ISLLEPYLDQIDL 143 (228)
T ss_pred HhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCC-----HHHHHHHHhhcCE
Confidence 13677777776655556778888888776 4 45566542 4677889999996
No 120
>KOG3040|consensus
Probab=28.39 E-value=1.7e+02 Score=24.38 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=58.1
Q ss_pred HHHHHHHh---CCCceEEEEeecC-hHHHHHHHHHcCCccceeeecCCcccceEEEEEecCC-CeeEEEeCCccccCCcc
Q psy8856 53 IAYNLKLL---NGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNN-NQITIFHPGAMQLSYDD 127 (312)
Q Consensus 53 ~a~~l~~l---G~~~~~~~~vG~d-~~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 127 (312)
..-++++| +..+.|++.--.+ -+.+.+.|++.|++++.-.+....+-.. -++.+++ +.++....+..+.+...
T Consensus 28 a~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~--~~~~~~~lrP~l~v~d~a~~dF~gi 105 (262)
T KOG3040|consen 28 AVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAAR--QYLEENQLRPYLIVDDDALEDFDGI 105 (262)
T ss_pred HHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHH--HHHHhcCCCceEEEcccchhhCCCc
Confidence 44555555 6788888877767 5678899999998876432222111111 1122222 33333344444444433
Q ss_pred ccCCcCCceEEEECCC--ChHHHHHHHHHHHhcCCcEEEcCC
Q psy8856 128 NCINNADIKIAIISPD--NCCNMIKHIKKILKLKIPFIFDPG 167 (312)
Q Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~D~~ 167 (312)
+-+. .++-++-+.+. ..+.+.++++.+.+...+..+-++
T Consensus 106 dTs~-pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~ 146 (262)
T KOG3040|consen 106 DTSD-PNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIG 146 (262)
T ss_pred cCCC-CCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEec
Confidence 3221 12223333332 446667777777666555555554
No 121
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=27.70 E-value=63 Score=27.18 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=33.1
Q ss_pred CcEeeecceeeeeEEecCCcccCCCCccccccceeeeecCCcccccCCchHHHHHHHHHhCCCceEEE
Q psy8856 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVS 68 (312)
Q Consensus 1 m~i~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~~~~~~ 68 (312)
|||++.+.++.+-+=.+ |+- .-.+-|+-|...|..|.+.|.+|.++.
T Consensus 1 ~~vliT~G~T~e~iD~V--R~i-------------------tN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 1 MKILITSGGTTEPIDSV--RGI-------------------TNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred CEEEEcCCCcccccCCc--eee-------------------cCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 88888888876554211 220 023448889999999999999988875
No 122
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.23 E-value=2.6e+02 Score=23.34 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=37.0
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEE
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYI 188 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl 188 (312)
.+++++.+..+......+++...++.|...-+-+++.- ..+.++.+++.+|.+
T Consensus 80 ~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~T---p~~~i~~~l~~~D~v 132 (220)
T PRK08883 80 AGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPAT---PLHHLEYIMDKVDLI 132 (220)
T ss_pred hCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHhCCeE
Confidence 46788877776656677888888888877665444421 256778899999963
No 123
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=26.83 E-value=96 Score=28.46 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhh-cccEEEeCHH
Q psy8856 148 MIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIK-KSSYIIVNEY 193 (312)
Q Consensus 148 ~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~-~~dvl~~n~~ 193 (312)
..++++.+++.+.|+++|..+.........+++.+. .+|+++.+-+
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~Sgd 222 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGD 222 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecc
Confidence 346778889999999999998543333334566665 5898887765
No 124
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.63 E-value=2.5e+02 Score=23.54 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=36.3
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEE
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYI 188 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl 188 (312)
.+++++.+..+......++++..++.|.+.-+-+++.- ..+.++.+++.+|.+
T Consensus 84 ~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T---~~~~i~~~l~~vD~V 136 (223)
T PRK08745 84 AGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPAT---PVDILDWVLPELDLV 136 (223)
T ss_pred hCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCC---CHHHHHHHHhhcCEE
Confidence 46778777766555667888888888876655444321 246678889999963
No 125
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=26.56 E-value=3.8e+02 Score=22.40 Aligned_cols=128 Identities=8% Similarity=0.006 Sum_probs=78.3
Q ss_pred cCCcCCceEEEECCCChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhccc--EEEeCHHHHHHhhcCCCCCH
Q psy8856 129 CINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSS--YIIVNEYESKLLVSKTSLSL 206 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~d--vl~~n~~E~~~l~~~~~~~~ 206 (312)
++.+..+++++.=...++...++.+.+++.|.+.++=+......+....+++.+..-. +.++. -+..|-.......
T Consensus 46 Lp~i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~--~~CsL~~~~~p~i 123 (217)
T PF02593_consen 46 LPKIPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPK--PFCSLEENGNPQI 123 (217)
T ss_pred ccCCCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCc--cccccCCCCChhH
Confidence 3336688988777777888999999999899988887776555555667888887644 44333 2333322112223
Q ss_pred HHHhh--cCCEEEEeeCCCceEEEecCCceEEcCCcccCCcCCCCCchhhhHHHHHHHHHcCCCHHHHHHHH
Q psy8856 207 QKINE--QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLS 276 (312)
Q Consensus 207 ~~l~~--g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~vdt~GaGDaf~ag~~~~l~~g~~~~~a~~~a 276 (312)
++..+ |...+=|... + ++.. .++ |+-..=||-++ |++-...|+++.++...+
T Consensus 124 ~~F~~~fGkP~~ei~v~--------~-~~I~-----~V~-VlR~aPCGsT~---~vAk~l~G~~~~d~~~~~ 177 (217)
T PF02593_consen 124 DEFAEYFGKPKVEIEVE--------N-GKIK-----DVK-VLRSAPCGSTW---FVAKRLIGKEVEDAPEKA 177 (217)
T ss_pred HHHHHHhCCceEEEEec--------C-CcEE-----EEE-EEecCCCccHH---HHHHHhcCCccchhhhhh
Confidence 34433 4444333322 1 3321 233 44444466444 677888999999988777
No 126
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=26.53 E-value=1.3e+02 Score=19.54 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHH
Q psy8856 253 DAFRSGVLFGIINNLDWYTTGRLSSL 278 (312)
Q Consensus 253 Daf~ag~~~~l~~g~~~~~a~~~a~a 278 (312)
|+|.+|+.+++. +.+....+..+..
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~~ 28 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIALI 28 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHH
Confidence 999999999998 4444444443333
No 127
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=26.32 E-value=94 Score=26.83 Aligned_cols=58 Identities=22% Similarity=0.115 Sum_probs=40.4
Q ss_pred CchhhhHHHHHHHHHcCCCHHHHHHHHHHHhchhee-------eccCCCCCCChHHHHHHHHHhh
Q psy8856 250 GCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEIS-------HQGGQKHCPSLSEIDQRFKEAF 307 (312)
Q Consensus 250 GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~-------~~g~~~~~~~~~ev~~~~~~~~ 307 (312)
-.||.+++.+.++...|.+++++++.++.==..-.. ..|......+.+++..++++..
T Consensus 193 ElGDlLf~lv~lAr~~~id~E~aL~~a~~Kf~rR~~~vE~~~~~~g~~~~~~s~ee~~~~W~~aK 257 (262)
T PRK09562 193 EFGDLLFALVNLARHLGIDPEAALRKANAKFERRFRAVEQLAAAQGKTLEDASLEEMDALWQEAK 257 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 479999999999999999999999877643211111 1132223568888888877643
No 128
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=25.35 E-value=4.6e+02 Score=22.85 Aligned_cols=124 Identities=17% Similarity=0.000 Sum_probs=64.1
Q ss_pred cCCchHHHHHHHHHhCCCceEEEEeecC-hHHH----HHHHHHcCCccceeeecCCcccceEE--EEEecCCCeeEEEeC
Q psy8856 46 YGGCAGNIAYNLKLLNGNPLIVSILGKD-GSSY----LKHLKYLGISNKYIQKINSMFTAQCF--IVTDVNNNQITIFHP 118 (312)
Q Consensus 46 ~GG~~~n~a~~l~~lG~~~~~~~~vG~d-~~~i----~~~l~~~gi~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~ 118 (312)
.-|-+.-+|..++..--+-..+...|+. +..+ .....++++++..+...++....+.. ......+........
T Consensus 69 ~~G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~ 148 (277)
T PRK09628 69 THGRAVAYATGIKLANPDKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQY 148 (277)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccC
Confidence 4578888888887775566778888876 3211 22257778888777665442111110 000011111111111
Q ss_pred Cc-cccCCccccCCcCCceEE-EECCCChHHHHHHHHHHHhcCCcEEEcCCCC
Q psy8856 119 GA-MQLSYDDNCINNADIKIA-IISPDNCCNMIKHIKKILKLKIPFIFDPGQS 169 (312)
Q Consensus 119 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 169 (312)
+. ...++...+....++..+ ...-...+.+.++++.+.+.+.+.++|+...
T Consensus 149 g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~~~Gp~lIeV~~~ 201 (277)
T PRK09628 149 GNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFSHKGFSFFDVFSN 201 (277)
T ss_pred CCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 11 111222222222344433 2344556778888888877778888887643
No 129
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=25.32 E-value=3.5e+02 Score=24.71 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcCCc-EEEcCCCCc
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLKIP-FIFDPGQSL 170 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~D~~~~~ 170 (312)
+++++++++-.. +...++...+.+.|.+ +++|.+...
T Consensus 64 ~~~Divf~a~~~-~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 64 KKLDIIITCQGG-DYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred cCCCEEEECCCH-HHHHHHHHHHHhCCCCeEEEECChHH
Confidence 467888776533 4667777777777874 789998643
No 130
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=24.96 E-value=3.3e+02 Score=21.07 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=38.5
Q ss_pred EEEECC-C-ChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccEEEeCHHH
Q psy8856 137 IAIISP-D-NCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYE 194 (312)
Q Consensus 137 ~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~E 194 (312)
.+.+++ + ..+.+.++++.+++.|..+.++-++.. .+...++++.+|+++....+
T Consensus 64 gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~----~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 64 CVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLEP----KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred EEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCCC----HHHHHHHHHhCCEEEEChHH
Confidence 444543 3 235677888889999999999876432 23456788999999888853
No 131
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=24.69 E-value=4.8e+02 Score=22.88 Aligned_cols=123 Identities=12% Similarity=-0.017 Sum_probs=62.0
Q ss_pred CchHHHHHHHHHhCCCceEEEEeecC-hH----HHHHHHHHcCCccceeeecCCcccceEE-E-EEecCCCeeEEEeCCc
Q psy8856 48 GCAGNIAYNLKLLNGNPLIVSILGKD-GS----SYLKHLKYLGISNKYIQKINSMFTAQCF-I-VTDVNNNQITIFHPGA 120 (312)
Q Consensus 48 G~~~n~a~~l~~lG~~~~~~~~vG~d-~~----~i~~~l~~~gi~~~~~~~~~~~~t~~~~-~-~~~~~~~~~~~~~~~~ 120 (312)
|-+.-+|..++...-+-.++...|+. +- .-+....++++++..+...++....+.- . -....+.+......+.
T Consensus 56 G~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~ 135 (287)
T TIGR02177 56 GRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPN 135 (287)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCc
Confidence 66777777777665556678888875 21 1134445568888777665432111100 0 0011111111111111
Q ss_pred c-ccCCccccCCcCCceEEEEC-CCChHHHHHHHHHHHhcCCcEEEcCCCCc
Q psy8856 121 M-QLSYDDNCINNADIKIAIIS-PDNCCNMIKHIKKILKLKIPFIFDPGQSL 170 (312)
Q Consensus 121 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~D~~~~~ 170 (312)
. ..+++..+....++.++... ....+.+.++++.+.+.+.+.++|+-...
T Consensus 136 ~~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIeV~~pC 187 (287)
T TIGR02177 136 IQDPVNPLLLAIALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVDILQPC 187 (287)
T ss_pred cCCCCCHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 1 11222222223455554333 35667888888888777777888876543
No 132
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.66 E-value=1.8e+02 Score=18.08 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=21.9
Q ss_pred ceEEEEeecC-------hHHHHHHHHHcCCccceeee
Q psy8856 64 PLIVSILGKD-------GSSYLKHLKYLGISNKYIQK 93 (312)
Q Consensus 64 ~~~~~~vG~d-------~~~i~~~l~~~gi~~~~~~~ 93 (312)
+.+++.+|.. ...+.+.+.+.||+.+.+..
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3567788864 24578899999999876654
No 133
>PRK03673 hypothetical protein; Provisional
Probab=24.25 E-value=1.8e+02 Score=26.87 Aligned_cols=48 Identities=8% Similarity=-0.119 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhCCCceEEEEeecChHHHHHHHHHcCCccceeeecCC
Q psy8856 49 CAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINS 96 (312)
Q Consensus 49 ~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~~gi~~~~~~~~~~ 96 (312)
.+...+..|..+|+++...+.+++|.+.+.+.+++..=+.+.+....+
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCC
Confidence 478888889999999999999999976677766665333455555444
No 134
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=24.11 E-value=1.1e+02 Score=22.23 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCCCCchhhhHHHHHHHHHcCC-CHHHHHHHHH
Q psy8856 246 VDPTGCGDAFRSGVLFGIINNL-DWYTTGRLSS 277 (312)
Q Consensus 246 vdt~GaGDaf~ag~~~~l~~g~-~~~~a~~~a~ 277 (312)
.|-.|-||..-|-+.|++..|. +.+||++.=.
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4788999999999999999984 8899887543
No 135
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.82 E-value=1.1e+02 Score=21.91 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcCCcEE-EcCCCC
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLKIPFI-FDPGQS 169 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~D~~~~ 169 (312)
++++++++.|..+-...++-+.+...++||. +|+...
T Consensus 46 ~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Y 83 (99)
T cd05565 46 PDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQY 83 (99)
T ss_pred cCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHH
Confidence 3678898999877666777777777777765 565543
No 136
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.79 E-value=2e+02 Score=18.09 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.1
Q ss_pred eEEEEeecC-------hHHHHHHHHHcCCccceeee
Q psy8856 65 LIVSILGKD-------GSSYLKHLKYLGISNKYIQK 93 (312)
Q Consensus 65 ~~~~~vG~d-------~~~i~~~l~~~gi~~~~~~~ 93 (312)
.+++.+|.+ ...+.+.|.+.||+.+.+..
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 467778864 34678889999998876644
No 137
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.60 E-value=1.8e+02 Score=20.72 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhCCCceEEEEeecC-hHHHHHHHHHcCCccc
Q psy8856 50 AGNIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKYLGISNK 89 (312)
Q Consensus 50 ~~n~a~~l~~lG~~~~~~~~vG~d-~~~i~~~l~~~gi~~~ 89 (312)
+.-....|+..|.++.++|.-+.. -..+.+.|++.|++.+
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 566777788889999999987766 5778899999998753
No 138
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=23.48 E-value=1.7e+02 Score=20.37 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHhchheeeccCCCCCCChHHHHHHHHHhh
Q psy8856 252 GDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEAF 307 (312)
Q Consensus 252 GDaf~ag~~~~l~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~~~~~ev~~~~~~~~ 307 (312)
.|..+-++++-++...++.+...+|..--..--...|...+.|+.+-+.++++...
T Consensus 22 ~~iL~i~~~a~l~G~~~~~~i~~~~~~~~~~l~~~l~~~~~~PS~~Ti~rvl~~ld 77 (90)
T PF13808_consen 22 ADILLIALCAVLCGADSWREIAEWARAHEEWLRKRLGLPRGVPSHDTIRRVLSRLD 77 (90)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHhHHHHHHhcCCCCCCCcHHHHHHHHHHCC
Confidence 46777777777777789999999999998887888888778999999988877644
No 139
>PRK08005 epimerase; Validated
Probab=23.43 E-value=3.1e+02 Score=22.75 Aligned_cols=52 Identities=6% Similarity=-0.109 Sum_probs=34.7
Q ss_pred CCceEEEECCCChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHhhcccE
Q psy8856 133 ADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSY 187 (312)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll~~~dv 187 (312)
.+++.+.+..+......++++..++.|.+.-+-+++.- ..+.+..+++.+|.
T Consensus 80 ~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T---p~~~i~~~l~~vD~ 131 (210)
T PRK08005 80 IRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPAT---PLLPYRYLALQLDA 131 (210)
T ss_pred hCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCC---CHHHHHHHHHhcCE
Confidence 36677777666545567788888888776555444321 24567788888886
No 140
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.33 E-value=5e+02 Score=22.63 Aligned_cols=123 Identities=16% Similarity=0.050 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHhCCCceEEEEeecC--hH---HHHHHHHHcCCccceeeecCCcc--cceEEEEEecCCCeeEEEeCCc
Q psy8856 48 GCAGNIAYNLKLLNGNPLIVSILGKD--GS---SYLKHLKYLGISNKYIQKINSMF--TAQCFIVTDVNNNQITIFHPGA 120 (312)
Q Consensus 48 G~~~n~a~~l~~lG~~~~~~~~vG~d--~~---~i~~~l~~~gi~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~ 120 (312)
|-+.-+|..++...-+..++...|+. +. .-+....++++++..+...++.. |+.......+.+.+......+.
T Consensus 62 G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~ 141 (279)
T PRK11866 62 GRVLPIATGVKWANPKLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGN 141 (279)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCC
Confidence 77888888887776556678888875 11 12344555688887776655411 1100011111122222111111
Q ss_pred c-ccCCccccCCcCCceEEEE-CCCChHHHHHHHHHHHhcCCcEEEcCCCCc
Q psy8856 121 M-QLSYDDNCINNADIKIAII-SPDNCCNMIKHIKKILKLKIPFIFDPGQSL 170 (312)
Q Consensus 121 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~ 170 (312)
. ..++...+....++.++-. ....++.+.+.++.+.+.+.+.++|+-...
T Consensus 142 ~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~pC 193 (279)
T PRK11866 142 IEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSPC 193 (279)
T ss_pred CCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 1 1122222222335544432 235667788888888777777787776543
No 141
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.22 E-value=2.4e+02 Score=22.43 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=27.9
Q ss_pred chHHHHHHHHHhCCCceEEEEeecChHHHHHHHHH
Q psy8856 49 CAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKY 83 (312)
Q Consensus 49 ~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~ 83 (312)
.+...+..|..+|+++..+..+++|...+.+.+++
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~ 54 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRR 54 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH
Confidence 46778888999999999999999886556665554
No 142
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.12 E-value=2.2e+02 Score=24.55 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhCCCceEEEEeecChHHHHHHHHHcCCccceeeecC
Q psy8856 49 CAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKIN 95 (312)
Q Consensus 49 ~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~~gi~~~~~~~~~ 95 (312)
.+..++..|..+|+++...+.+++|-..|.+.+++.--+.+.+....
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttG 70 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTG 70 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeC
Confidence 36778888999999999999999995556555554322234444433
No 143
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=22.83 E-value=3.4e+02 Score=23.96 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=46.4
Q ss_pred eeecceeeeeEEecCCcccCCCCccccccceeeee-------cCCc-ccccCC--chHHHHHHHHHhCCCceEEEEeecC
Q psy8856 4 LICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFY-------SPTM-KKEYGG--CAGNIAYNLKLLNGNPLIVSILGKD 73 (312)
Q Consensus 4 ~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~GG--~~~n~a~~l~~lG~~~~~~~~vG~d 73 (312)
.++|+..|++++ +| ..|. |-.+.+...... ++.. +...|| .-...+..+..+|.++..+..-+.-
T Consensus 28 ~~lg~~~WeR~v-~D-p~PG---P~~~~~~~~~~~i~~~~~~v~~~s~~~r~g~~~~pqla~~~~~l~~~v~~~d~~~Gv 102 (297)
T PF06626_consen 28 VVLGSVVWERYV-VD-PVPG---PRPLEEFRGAEWINPHLALVTPDSYAIRGGRFVEPQLARVLRALGEPVYAFDPTGGV 102 (297)
T ss_pred eEEEEeeeEeee-cC-CCCC---CcCHHHhccceeecCceEEeCCcccccCCCceehhHHHHHHHhcCCcEEEECCCCCc
Confidence 578999999886 55 5544 222222221111 1111 223354 5677888889999998777754433
Q ss_pred ---hHHHHHHHHHcCCcc
Q psy8856 74 ---GSSYLKHLKYLGISN 88 (312)
Q Consensus 74 ---~~~i~~~l~~~gi~~ 88 (312)
.+.+.+..+++++|.
T Consensus 103 ~~l~~al~~l~~~~~iD~ 120 (297)
T PF06626_consen 103 QGLARALRELAEKLGIDA 120 (297)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 344566667777765
No 144
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=22.74 E-value=1.4e+02 Score=24.18 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=31.5
Q ss_pred EEEcCCCCcccCCHHHHHHHhhcccEEEeCHH--HHHHhhcCCCCCHHHHhh-cCCEEEEee
Q psy8856 162 FIFDPGQSLSMFTKEELIKIIKKSSYIIVNEY--ESKLLVSKTSLSLQKINE-QVKVLIVTR 220 (312)
Q Consensus 162 v~~D~~~~~~~~~~~~l~~ll~~~dvl~~n~~--E~~~l~~~~~~~~~~l~~-g~~~vvvt~ 220 (312)
|.+|+... ...+.+.+|+..+||++-|.. .++. .+.+.++|.+ +.+.|.++.
T Consensus 1 V~lDl~~~---~gr~~l~~L~~~ADV~i~n~rpg~~~~----lGl~~~~l~~~nP~LV~~~i 55 (191)
T PF02515_consen 1 VALDLKSP---EGRAALRRLLATADVVIENFRPGVLER----LGLDYEALRAINPRLVYCSI 55 (191)
T ss_dssp EEEETTSH---HHHHHHHHHHHT-SEEEEESSTTHHHH----TT-SHHHHHHH-TT-EEEEE
T ss_pred CEeeCcCH---HHHHHHHHHHHhCCEEEECCchhhhHh----cCCCHHHHHhhCCCCeEEEE
Confidence 45676542 235678999999999988775 3333 3556677766 666666653
No 145
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=22.52 E-value=1.3e+02 Score=26.29 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=26.9
Q ss_pred CchhhhHHHHHHHHHcCCCHHHHHHHHHHH
Q psy8856 250 GCGDAFRSGVLFGIINNLDWYTTGRLSSLM 279 (312)
Q Consensus 250 GaGDaf~ag~~~~l~~g~~~~~a~~~a~a~ 279 (312)
-.||.+++-.-++...|.+++.||+.++.-
T Consensus 226 e~GdlLf~lv~~ar~~~idpE~aLr~a~~k 255 (277)
T PRK12334 226 ELGALLLALVAVAVAAGVDAEAALRAAVRD 255 (277)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 469999999999999999999999988753
No 146
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.38 E-value=2.5e+02 Score=21.42 Aligned_cols=36 Identities=17% Similarity=-0.017 Sum_probs=28.1
Q ss_pred chHHHHHHHHHhCCCceEEEEeecChHHHHHHHHHc
Q psy8856 49 CAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYL 84 (312)
Q Consensus 49 ~~~n~a~~l~~lG~~~~~~~~vG~d~~~i~~~l~~~ 84 (312)
.+..++..|.++|.++...+.+++|-..+.+.+++.
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 63 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKA 63 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 467778889999999999999999955555555543
No 147
>PF10627 CsgE: Curli assembly protein CsgE; InterPro: IPR018900 Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis []. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF [].
Probab=22.21 E-value=1.5e+02 Score=21.67 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=27.5
Q ss_pred EEEeecC-hHHHHHHHHHcCCccceeeecCCcccceE--EEEEecCCCeeEEE
Q psy8856 67 VSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQC--FIVTDVNNNQITIF 116 (312)
Q Consensus 67 ~~~vG~d-~~~i~~~l~~~gi~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~ 116 (312)
++.+|+| +..+.+.++...++........+.++... .+.+.-+++..+.+
T Consensus 11 ~Tr~G~DFY~~Fs~~~~~~~~~~~~~itI~E~ps~r~GS~I~V~~~~~~iy~t 63 (107)
T PF10627_consen 11 ITRFGHDFYRYFSQKWRDIPITSGFNITIKERPSARWGSLITVEVNNKVIYQT 63 (107)
T ss_pred cccchHHHHHHHHHHHhhcCCCCCceEEEEEEECCCCCCEEEEEECCEEEEEE
Confidence 5788999 67777777777655554444444444322 33344444444433
No 148
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=21.64 E-value=1.2e+02 Score=24.20 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCc-hHHHHHHHHHhCCCceEEEE-eec-C-hHHHHHHHHHcCCccc
Q psy8856 47 GGC-AGNIAYNLKLLNGNPLIVSI-LGK-D-GSSYLKHLKYLGISNK 89 (312)
Q Consensus 47 GG~-~~n~a~~l~~lG~~~~~~~~-vG~-d-~~~i~~~l~~~gi~~~ 89 (312)
||. ..-.|+.|.+||+++.++++ +|- | .....+.....|....
T Consensus 9 GGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~ 55 (198)
T COG2117 9 GGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHE 55 (198)
T ss_pred CCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcc
Confidence 665 77889999999999999984 442 3 4444455555554433
No 149
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=21.17 E-value=5e+02 Score=21.96 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHhcCCcEEEcCCCCcccCCHHHHHHHh----h-cccEEEe-----CHHHHHHhhcCCCCCHHHHh--h
Q psy8856 144 NCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKII----K-KSSYIIV-----NEYESKLLVSKTSLSLQKIN--E 211 (312)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~l~~ll----~-~~dvl~~-----n~~E~~~l~~~~~~~~~~l~--~ 211 (312)
..+...+++..+++.+..+++.-+.....-..+.+..++ . .+|++++ +..+...+.... .+.. .
T Consensus 110 ~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~----~~~~~~~ 185 (238)
T PRK13575 110 DIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAM----STFSDTM 185 (238)
T ss_pred ChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHH----HHHHhcc
Confidence 346677778888888999998777543322333443333 2 4788765 223333332210 1111 1
Q ss_pred cCCEEEEeeCCCce
Q psy8856 212 QVKVLIVTRGELGS 225 (312)
Q Consensus 212 g~~~vvvt~G~~G~ 225 (312)
..+.+.+.+|+.|.
T Consensus 186 ~~p~i~i~MG~~G~ 199 (238)
T PRK13575 186 DCKVVGISMSKLGL 199 (238)
T ss_pred CCCEEEEeCCCCCc
Confidence 46778899999985
No 150
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=20.43 E-value=68 Score=19.82 Aligned_cols=18 Identities=39% Similarity=0.826 Sum_probs=15.5
Q ss_pred CCCchhhhHHHHHHHHHc
Q psy8856 248 PTGCGDAFRSGVLFGIIN 265 (312)
Q Consensus 248 t~GaGDaf~ag~~~~l~~ 265 (312)
+.|.+|+...|.++++..
T Consensus 2 ~~G~~Daa~Tgi~~G~l~ 19 (53)
T PF11167_consen 2 TIGLGDAADTGILYGLLW 19 (53)
T ss_pred eeeccCHHHHHHHHHHHH
Confidence 468999999999999865
Done!