RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8856
(312 letters)
>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 279
Score = 262 bits (672), Expect = 2e-87
Identities = 92/292 (31%), Positives = 158/292 (54%), Gaps = 20/292 (6%)
Query: 4 LICGSLAFDNI---MRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
+ G L +D I F G F S +++E+GG AGN A L L
Sbjct: 3 AVVGHLNYDIILKVESFPGPFE-------------SVLVKDLRREFGGSAGNTAVALAKL 49
Query: 61 NGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP 118
+P +V+ +G+D G YL+ L+ G+ +++ ++ T FI+TD ++NQI F+P
Sbjct: 50 GLSPGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYP 109
Query: 119 GAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEEL 178
GAM + N + D I+ + +I+ +++ I FDPGQ L + EEL
Sbjct: 110 GAMDE-LEPNDEADPDGLADIVHLSSGPGLIELARELAAGGITVSFDPGQELPRLSGEEL 168
Query: 179 IKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIP 238
+I++++ + VN+YE++LL +T LS ++ V+V++VT G G+ +F + ++++P
Sbjct: 169 EEILERADILFVNDYEAELLKERTGLSEAELASGVRVVVVTLGPKGAIVF-EDGEEVEVP 227
Query: 239 CVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ 290
V A ++VD TG GDAFR+G L+G++ D + RL +L S ++ +G Q
Sbjct: 228 AVPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVERRGAQ 279
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism].
Length = 311
Score = 148 bits (376), Expect = 1e-42
Identities = 62/321 (19%), Positives = 125/321 (38%), Gaps = 29/321 (9%)
Query: 4 LICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGN 63
++ G D I + + P+ + + F+ K GG N+A L L
Sbjct: 3 VVIGEANVDLIAQVVDRL-----PEPGETVLGDFF----KVAGGGKGANVAVALARLGAK 53
Query: 64 PLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAM 121
++ +G D G L+ L+ G+ ++ T I+ D + + +F+ GA
Sbjct: 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAA 113
Query: 122 QLSYDDNCINNADIKIA----------IISPDNCCNMIKHIKKILKLKIPFIFDPGQSLS 171
L ++ ++ A I P+ ++ K + FD +
Sbjct: 114 ALLLTPEDLDEDELAGADVLHISGIQLEIPPEALLAALELAKA---AGVTVSFDLNPRPA 170
Query: 172 MFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINE----QVKVLIVTRGELGSDI 227
++ +E L +++ + + NE E++LL + VK ++VT G G+ +
Sbjct: 171 LWDRELLEELLALADILFPNEEEAELLTGLEEDAEAAAALLLAKGVKTVVVTLGAEGAVV 230
Query: 228 FLNNER-KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISH 286
F + +P ++VD TG GDAF +G L G++ R ++ + ++
Sbjct: 231 FTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAALAVTR 290
Query: 287 QGGQKHCPSLSEIDQRFKEAF 307
G + P+ E++ +E
Sbjct: 291 PGARPSLPTREEVEAFLEELE 311
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 129 bits (327), Expect = 1e-35
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 23/269 (8%)
Query: 40 PTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSM 97
T++K GG N+A L L G + +G D G L+ LK G+ Y+
Sbjct: 29 KTVEKGAGGAGANVAVALARLGGEVTFIGKVGDDNFGEFLLELLKKEGVDTDYVVIDEDT 88
Query: 98 FTAQCFIVTDVNNNQITIFHPGAM-----QLSYDDNCINNADIKIAIISPDNCC----NM 148
T I+ D + + F+ GA + +D N + ++ P
Sbjct: 89 RTGLALILVDGDGERTINFYRGAAADLTPEELPEDLLENADILYLSGSLPLPLPEATLEE 148
Query: 149 IKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS--- 205
+ K P + DP + E L++++ + + NE E + L +
Sbjct: 149 LIEAAKNGGTFDPNLRDP--LWADL--EVLLELLPLADILKPNEEELEALTGEKINDIEE 204
Query: 206 ----LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLF 261
L K + VK ++VT G G+ + + + +P V ++VD TG GDAF +G L
Sbjct: 205 ALAALHKHAKGVKTVVVTLGADGALLVDGDGE-VHVPPVPKVKVVDTTGAGDAFVAGFLA 263
Query: 262 GIINNLDWYTTGRLSSLMGSTEISHQGGQ 290
G++ R ++ + + + G
Sbjct: 264 GLLAGKSLEEALRFANAVAALVVQKTGAI 292
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the
phosphorylation of ribofuranosyl-containing nucleoside
analogues at the 5'-hydroxyl using ATP or GTP as the
phosphate donor.The physiological function of AK is
associated with the regulation of extracellular
adenosine levels and the preservation of intracellular
adenylate pools. Adenosine kinase is involved in the
purine salvage pathway. .
Length = 312
Score = 83.0 bits (206), Expect = 3e-18
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 34/266 (12%)
Query: 46 YGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCF 103
GG A N L G+ + +G D G LK L+ G+ +Y Q T C
Sbjct: 54 AGGSAANTIRGAAALGGSAAFIGRVGDDKLGDFLLKDLRAAGVDTRY-QVQPDGPTGTCA 112
Query: 104 IVTDVNNNQITIFHPGA-MQLSYDDNCINNADIKIAII----------SPDNCCNMIKHI 152
++ + + + GA +LS DD ++ + + A P+ +H
Sbjct: 113 VLVTPDAERTMCTYLGAANELSPDD--LDWSLLAKAKYLYLEGYLLTVPPEAILLAAEHA 170
Query: 153 KK-----ILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLL--VSKTSL- 204
K+ L L PFI KE L++++ + NE E++ L T
Sbjct: 171 KENGVKIALNLSAPFIVQ-------RFKEALLELLPYVDILFGNEEEAEALAEAETTDDL 223
Query: 205 --SLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFG 262
+L+ + + +++++T+G G+ + + +P + ++IVD G GDAF G L+G
Sbjct: 224 EAALKLLALRCRIVVITQGAKGA-VVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYG 282
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQG 288
++ RL S + I G
Sbjct: 283 LVQGEPLEECIRLGSYAAAEVIQQLG 308
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases
that accept a wide variety of substrates, including
carbohydrates and aromatic small molecules, all are
phosphorylated at a hydroxyl group. The superfamily
includes ribokinase, fructokinase, ketohexokinase,
2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase,
the minor 6-phosphofructokinase (PfkB),
inosine-guanosine kinase, and adenosine kinase. Even
though there is a high degree of structural conservation
within this superfamily, their multimerization level
varies widely, monomeric (e.g. adenosine kinase),
dimeric (e.g. ribokinase), and trimeric (e.g THZ
kinase).
Length = 196
Score = 80.6 bits (199), Expect = 4e-18
Identities = 53/266 (19%), Positives = 88/266 (33%), Gaps = 83/266 (31%)
Query: 7 GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLI 66
GSL D I+R + LP L + + GG A N+A
Sbjct: 6 GSLLVDVILRVDALP----LPGGLVRPGDTEERA------GGGAANVAVA---------- 45
Query: 67 VSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYD 126
L LG+S +V D
Sbjct: 46 --------------LARLGVS--------------VTLVG------------------AD 59
Query: 127 DNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSS 186
I+ ++ +++ + +P + DPG EEL K++
Sbjct: 60 AVVISGLSPAPEA--------VLDALEEARRRGVPVVLDPGPRAVRLDGEELEKLLPGVD 111
Query: 187 YIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGELGSDIFLNNERKIKIP 238
+ NE E++ L + L +++ E KV+IVT GE G+ + ++ +P
Sbjct: 112 ILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVP 171
Query: 239 CVKADRIVDPTGCGDAFRSGVLFGII 264
+VD TG GDAF + + G+
Sbjct: 172 AFPVK-VVDTTGAGDAFLAALAAGLA 196
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates
2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the
glycolysis and therefore use polymers, like pectin and
xylan as carbon sources.
Length = 294
Score = 77.2 bits (191), Expect = 2e-16
Identities = 52/274 (18%), Positives = 113/274 (41%), Gaps = 26/274 (9%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
+ + +K +GG N+A L L +V+ +G D G L L+ G+ +++
Sbjct: 22 QADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRVDP 81
Query: 96 SMFTAQCFIVTDVNN-NQITIFHPG--AMQLS---YDDNCINNADIKIAI--ISP---DN 144
T F+ ++ + G A +L+ D+ + AD + + I+ ++
Sbjct: 82 GRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH-LHLSGITLALSES 140
Query: 145 CCNMIKHIKKILKLK-IPFIFDPGQSLSMFTKEE----LIKIIKKSSYIIVNEYESKLLV 199
+ + K + + FD +++ EE L +++ ++ +E E++ L+
Sbjct: 141 AREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALL 200
Query: 200 SKTSLS-----LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDA 254
+ + VK ++V G G+ + ++ +P + +VD TG GDA
Sbjct: 201 GDEDPTDAAERALALALGVKAVVVKLGAEGA-LVYTGGGRVFVPAYPVE-VVDTTGAGDA 258
Query: 255 FRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288
F +G L G++ D R ++ + ++ G
Sbjct: 259 FAAGFLAGLLEGWDLEEALRFANAAAALVVTRPG 292
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose,
as are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry
point into glycolysis via conversion into
glucose-6-phosphate. This is in contrast to FRKs [or
ketohexokinases (KHKs)] from mammalia and halophilic
archaebacteria, which phosphorylate fructose to
fructose-1-phosphate.
Length = 295
Score = 75.0 bits (185), Expect = 1e-15
Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 21/245 (8%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG N+A L L G + +G D G L+ LK G+ + IQ + T F+
Sbjct: 28 GGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFV 87
Query: 105 VTDVNNNQITIFHPGA---MQLSYDDN--CINNADI----KIAIISPDNCCNMIKHIKKI 155
D + + F+ G + L + N ++ ADI IA+ S + +++ ++
Sbjct: 88 TLDADGERSFEFYRGPAADLLLDTELNPDLLSEADILHFGSIALASEPSRSALLELLEAA 147
Query: 156 LKLKIPFIFDPGQSLSMFTKEE-----LIKIIKKSSYIIVNEYESKLLVSK---TSLSLQ 207
K + FDP ++ EE + ++++ + + +++ E +LL + ++
Sbjct: 148 KKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEEIAAL 207
Query: 208 KINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267
+ +K+++VTRG G+ ++ +P + + +VD TG GDAF +G+L +++
Sbjct: 208 LLLFGLKLVLVTRGADGALLYTKGGVGE-VPGIPVE-VVDTTGAGDAFVAGLLAQLLSRG 265
Query: 268 DWYTT 272
Sbjct: 266 LLALD 270
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 74.9 bits (185), Expect = 2e-15
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSY 125
+G D G L++L+ GI Y++ + T I V + N+I + PGA +L+
Sbjct: 59 VGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVV-VPGANGELTP 117
Query: 126 DD-----NCINNADIKIAI--ISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEEL 178
D I AD+ + I + + ++ + + I +P + +
Sbjct: 118 ADVDAALELIAAADVLLLQLEIPLETV---LAALRAARRAGVTVILNPAPA-----RPLP 169
Query: 179 IKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVL--------IVTRGELGSDIFLN 230
+++ ++ NE E+ LL + + ++L IVT G G+ + +
Sbjct: 170 AELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGA-LLAS 228
Query: 231 NERKIKIPCVKADRIVDPTGCGDAF 255
+P K VD TG GD F
Sbjct: 229 GGEVEHVPAFKVK-AVDTTGAGDTF 252
>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional.
Length = 326
Score = 72.8 bits (179), Expect = 1e-14
Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 46/309 (14%)
Query: 28 DQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLG 85
D++ ++ + + + K +GG N A L +V ++G D GS +K+ K G
Sbjct: 33 DRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNG 92
Query: 86 ISNKYIQKINSMFTAQCFIVTDV--NNNQITIFHPGAMQLSYDDNCINNADIKIAIISPD 143
++ ++ + + T I D NN+I + PGA +N + + D
Sbjct: 93 VNTSFVSRTENSSTGLAMIFVDTKTGNNEI-VIIPGA------NNALTPQMV-------D 138
Query: 144 NCCNMIKHIKKIL--KLKIPF-----------------IFDPGQSLSMFTKEELIKIIKK 184
+ I++I K L + +IP +F+P + + E + +K
Sbjct: 139 AQTDNIQNICKYLICQNEIPLETTLDALKEAKERGCYTVFNPAPAPKLAEVEIIKPFLKY 198
Query: 185 SSYIIVNEYESKLL----VSKTSLSLQKINE----QVKVLIVTRGELGSDIFLNNERKIK 236
S VNE E+ L+ V+ T + + E V+ +I+T G G I +
Sbjct: 199 VSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGANGCLIVEKENEPVH 258
Query: 237 IPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL 296
+P + VD TG GD F + + + D + + ++ + + ++ G Q P
Sbjct: 259 VPGKRVK-AVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAISVTRHGTQSSYPHP 317
Query: 297 SEIDQRFKE 305
SE+ KE
Sbjct: 318 SELPADVKE 326
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 69.3 bits (170), Expect = 1e-13
Identities = 59/289 (20%), Positives = 106/289 (36%), Gaps = 45/289 (15%)
Query: 4 LICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGN 63
++ G+ D GK S SL+P S +K+ GG NIA NL L +
Sbjct: 3 VVIGAANID----LRGKVSGSLVPGT------S-NPGHVKQSPGGVGRNIAENLARLGVS 51
Query: 64 PLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIF----- 116
++S +G D G S L+ + G+ N TA + D + + +
Sbjct: 52 VALLSAVGDDSEGESILEESEKAGL-NVRGIVFEGRSTASYTAILDKDGDLVVALADMDI 110
Query: 117 --HPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKH-IKKILKLK----IPFIFDPGQS 169
L + A + D N+ + ++ +L L +P F+P
Sbjct: 111 YELLTPDFLRKIREALKEAKPIVV----D--ANLPEEALEYLLALAAKHGVPVAFEP--- 161
Query: 170 LSMFTKEELIKIIKKSSYIIVNEYESK----LLVSKTSLSLQKINEQ----VKVLIVTRG 221
S ++L ++ + N E + L+ + +K +IVT G
Sbjct: 162 TSAPKLKKLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLG 221
Query: 222 ELGSDIFLNNERKIK--IPCVKADRIVDPTGCGDAFRSGVLFGIINNLD 268
G + P + + +V+ TG GDAF +G++ G++ +
Sbjct: 222 AKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMS 270
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase. This model describes
ribokinase, an enzyme catalyzing the first step in
ribose catabolism. The rbsK gene encoding ribokinase
typically is found with ribose transport genes.
Ribokinase belongs to the carbohydrate kinase pfkB
family (pfam00294). In the wide gulf between the current
trusted (360 bit) and noise (100 bit) cutoffs are a
number of sequences, few of which are clustered with
predicted ribose transport genes but many of which are
currently annotated as if having ribokinase activity.
Most likely some have this function and others do not
[Energy metabolism, Sugars].
Length = 293
Score = 64.2 bits (157), Expect = 1e-11
Identities = 69/318 (21%), Positives = 122/318 (38%), Gaps = 49/318 (15%)
Query: 7 GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLI 66
GS+ D ++R D+L K + + + + GG N A L +
Sbjct: 1 GSINMDLVLRT----------DRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSM 50
Query: 67 VSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQ 122
+ +G D G L++LK GI +Y+ + T FI V D N+I + GA +
Sbjct: 51 IGKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVV-AGANAE 109
Query: 123 LSYDD-----NCINNADI-----KIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSM 172
L+ +D I +DI +I + + + K K + I +P ++
Sbjct: 110 LTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAKIAK------KHGVKVILNPAPAIKD 163
Query: 173 FTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINE--------QVKVLIVTRGELG 224
E ++ I NE E+++L + + VK +I+T G G
Sbjct: 164 LDDE----LLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKG 219
Query: 225 SDIFLNNERKIKIP--CVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGST 282
+ + ++ + IP VKA VD T GD F + R ++ +
Sbjct: 220 A-LLVSKDESKLIPAFKVKA---VDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAI 275
Query: 283 EISHQGGQKHCPSLSEID 300
++ +G Q P L E++
Sbjct: 276 SVTRKGAQSSIPYLEEVE 293
>gnl|CDD|238921 cd01946, ribokinase_group_C, Ribokinase-like subgroup C. Found
only in bacteria, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 277
Score = 58.2 bits (141), Expect = 7e-10
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 174 TKEELIKIIKKSSYIIVNEYESKLLVSKTSL--SLQKINEQ-VKVLIVTRGELGSDIFLN 230
E+L K++ K +I+N+ E++ L +L + + I K LI+ RGE G+ +F
Sbjct: 153 KPEKLKKVLAKVDVVIINDGEARQLTGAANLVKAARLILAMGPKALIIKRGEYGALLF-T 211
Query: 231 NERKIKIPCVKADRIVDPTGCGDAFRSG 258
++ P + + DPTG GD F G
Sbjct: 212 DDGYFAAPAYPLESVFDPTGAGDTFAGG 239
>gnl|CDD|238912 cd01937, ribokinase_group_D, Ribokinase-like subgroup D. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time.
Length = 254
Score = 57.8 bits (140), Expect = 1e-09
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 19/238 (7%)
Query: 30 LDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNK 89
+D+I + + + GG A + L L +V+ +G+D L GI
Sbjct: 10 IDEIVTN---GSGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDKWSDLFDNGIE-V 65
Query: 90 YIQKINSMFTAQCFIVTDVNNNQITIFHPG-AMQLSYDDNCINNADIKIAIISPDNCCNM 148
S T + T+ A+ + A+I I+ P +
Sbjct: 66 ISLL--STETTTFELNYTNEGRTRTLLAKCAAIPDTESPLSTITAEI--VILGP-----V 116
Query: 149 IKHIKKILKLKIPFIF-DPGQSLSMFTKEELIK--IIKKSSYIIVNEYESKLLVSKTSLS 205
+ I L K FI D L +E+LIK I+K + ++ E++++ + T L+
Sbjct: 117 PEEISPSLFRKFAFISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVISTPTELA 176
Query: 206 LQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
VK +IVT GE G IF N K IP K D +VDPTG GD F + L+
Sbjct: 177 RLIKETGVKEIIVTDGEEGGYIFDGN-GKYTIPASKKD-VVDPTGAGDVFLAAFLYSR 232
>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose
synthase involved in the biosynthesis of the
lipopolysaccharide (LPS) core precursor
ADP-L-glycero-D-manno-heptose. LPS plays an important
role in maintaining the structural integrity of the
bacterial outer membrane of gram-negative bacteria. RfaE
consists of two domains, a sugar kinase domain,
represented here, and a domain belonging to the
cytidylyltransferase superfamily.
Length = 304
Score = 57.6 bits (140), Expect = 2e-09
Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 44/266 (16%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG A N+A NL L ++ ++G D G K L+ GI I T + +
Sbjct: 40 GG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRV 98
Query: 105 VTDVNNNQIT-----IFHPG-----AMQLSYDDNCINNADIKI------AIISPDNCCNM 148
+ N Q+ P + + AD+ I +++P +
Sbjct: 99 I--ARNQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEAL 156
Query: 149 IKHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS-- 205
I ++ L IP + DP G+ S + L+ NE E++ +
Sbjct: 157 IAAARE---LGIPVLVDPKGRDYSKYRGATLLTP---------NEKEAREALGDEINDDD 204
Query: 206 -----LQKINEQ--VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG 258
+K+ E ++ L+VT GE G +F + IP A + D TG GD +
Sbjct: 205 ELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIP-ALAKEVYDVTGAGDTVIAT 263
Query: 259 VLFGIINNLDWYTTGRLSSLMGSTEI 284
+ + D L++ +
Sbjct: 264 LALALAAGADLEEAAFLANAAAGVVV 289
>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar
kinases. Found in bacteria and archaea, the guanosine
kinase-like group is part of the ribokinase/pfkB sugar
kinase superfamily. Its oligomerization state is unknown
at this time.
Length = 265
Score = 56.7 bits (137), Expect = 2e-09
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 20/253 (7%)
Query: 39 SPTMKKEYGGCAGNIAYNLKLLNGNPL-IVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
S ++ GG N+A L L GN + S LG+D G L+ L+ G +
Sbjct: 28 SSDSRESPGGGGANVAVQLAKL-GNDVRFFSNLGRDEIGIQSLEELESGGDKHT--VAWR 84
Query: 96 SMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKI 155
T + D N + TI PG +L D + I+ +
Sbjct: 85 DKPTRKTLSFID-PNGERTITVPGE-RLEDDLKWPILDEGDGVFITAAAVDKEAIRKCRE 142
Query: 156 LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKV 215
KL I + + +EL + + +I + + LV ++ +
Sbjct: 143 TKLVI---LQVTPRVRV---DELNQALIPLDILIGSRLDPGELVVAEKIAGP----FPRY 192
Query: 216 LIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRL 275
LIVT GELG+ ++ +P KA + D TG GD+F +G ++G++ L
Sbjct: 193 LIVTEGELGAILYPGGRYN-HVPAKKAK-VPDSTGAGDSFAAGFIYGLLKGWSIEEALEL 250
Query: 276 SSLMGSTEISHQG 288
+ G+ +SH G
Sbjct: 251 GAQCGAICVSHFG 263
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 53.0 bits (128), Expect = 5e-08
Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 48/259 (18%)
Query: 52 NIAYNLKLLNGNPLIVSILGKDGSSYLK-HLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N+A L L + LG +++ L GI N ++ ++ T + + +
Sbjct: 40 NVARVLARLGAEVVATGFLGGFTGEFIEALLAEEGIKNDFV-EVKGE-TRINVKIKESSG 97
Query: 111 NQITIFHPGAM-------QL--SYDDNCINNADIKIAIIS-------PDNCCNMIKHIKK 154
+ + PG QL + A I +IS P + +
Sbjct: 98 EETELNEPGPEISEEELEQLLEKLRELL---ASGDIVVISGSLPPGVPPD---FYAQLIA 151
Query: 155 IL-KLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIV-NEYESKLLVSKTSLSLQKINEQ 212
I K I D + E L + + ++I N E + L + + ++I E
Sbjct: 152 IARKRGAKVILD-------TSGEALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEA 204
Query: 213 VKVL--------IVTRGELGSDIFLNNERKIK--IPCVKADRIVDPTGCGDAFRSGVLFG 262
+ L +V+ G G+ + + E +K P V+ V+ G GD+ +G L G
Sbjct: 205 ARELLDRGAENVLVSLGADGA-LLVTKEGALKATPPKVEV---VNTVGAGDSMVAGFLAG 260
Query: 263 IINNLDWYTTGRLSSLMGS 281
+ L R + GS
Sbjct: 261 LARGLSLEEALRFAVAAGS 279
>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in
bacteria and plants, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time. .
Length = 284
Score = 52.7 bits (127), Expect = 7e-08
Identities = 59/304 (19%), Positives = 94/304 (30%), Gaps = 34/304 (11%)
Query: 4 LICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGN 63
L G D I P KI + Y GG A N A + L G
Sbjct: 3 LGVGLAVLDLIYLVAS------FPGGDGKIVATDY----AVIGGGNAANAAVAVARLGGQ 52
Query: 64 PLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIF---HP 118
++ ++G D G L L G+ +I + I +
Sbjct: 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSITDITGDRATISITAIDT 112
Query: 119 GAMQLSYDDNCINNADIKIAIISPDNCCNMIKHI-KKILKLKIPFIFDPGQSLSMFTKEE 177
A S D + AD A++ H+ ++ IP D + EE
Sbjct: 113 QAAPDSLPDAILGGAD---AVLVDGRQPEAALHLAQEARARGIPIPLD-LDGGGLRVLEE 168
Query: 178 LIKIIKKSSYIIVNE------YESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNN 231
L+ + + I +E S + L+ I + VT GE G +
Sbjct: 169 LLPLA---DHAICSENFLRPNTGSADDEALELLASLGI----PFVAVTLGEAGCLWLERD 221
Query: 232 ERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQK 291
+P + +VD TG GD F + + R +S + + GG+
Sbjct: 222 GELFHVPAFPVE-VVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLGGRA 280
Query: 292 HCPS 295
P+
Sbjct: 281 GLPT 284
>gnl|CDD|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein.
Length = 426
Score = 49.0 bits (117), Expect = 2e-06
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 175 KEELIKIIKKSSYII-VNEYESKLLV---SKTSLS--LQKINEQVKVLIVTRGELGSDIF 228
+++ ++ + I+ N E++ L S+ S + ++ ++ VT G GS I
Sbjct: 272 RDDFWDVMGNYADILFANSDEARALCGLGSEESPESATRYLSHFCPLVSVTDGARGSYIG 331
Query: 229 LNNERKIKIP---CVKADRIVDPTGCGDAFRSGVLFGIINNL-DWYTTGRLSSLMGSTEI 284
+ E + IP CV VD G GDA+ +G+L+G++ + D G L++ + +T +
Sbjct: 332 VKGE-AVYIPPSPCVP----VDTCGAGDAYAAGILYGLLRGVSDLRGMGELAARVAATVV 386
Query: 285 SHQGGQKHCPSLSEID-QRFKEAFGYRYN 312
QG L D E+F +
Sbjct: 387 GQQG-----TRLRVEDAVELAESFALHLD 410
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 47.5 bits (114), Expect = 3e-06
Identities = 44/252 (17%), Positives = 88/252 (34%), Gaps = 58/252 (23%)
Query: 52 NIAYNLKLLNGNPLIVSILGKDGSSYLKH-LKYLGISNKYIQ-----KINSMFTAQCFIV 105
N+A LK L + LG + + LK GI + +++ +IN +
Sbjct: 41 NVARVLKDLGVEVTALGFLGGFTGDFFEALLKEEGIPDDFVEVAGETRINVKIKEEDGTE 100
Query: 106 TDVNNNQITIFHPGAMQLS----------YDDNCINNADIKIAIIS-------PDNCCNM 148
T++N PG ++S I ++S P +
Sbjct: 101 TEINE-------PG-PEISEEELEALLEKLKALL---KKGDIVVLSGSLPPGVPADFYAE 149
Query: 149 IKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIV-NEYESKLLVSKTSLSLQ 207
+ ++ + I D + E L+ + ++I N E + L + +
Sbjct: 150 L--VRLAREKGARVILD-------TSGEALLAALAAKPFLIKPNREELEELFGRPLGDEE 200
Query: 208 -------KINEQ-VKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRS 257
K+ E+ + ++V+ G G+ + + + + P VK V G GD+ +
Sbjct: 201 DVIAAARKLIERGAENVLVSLGADGA-LLVTKDGVYRASPPKVKV---VSTVGAGDSMVA 256
Query: 258 GVLFGIINNLDW 269
G + G+ L
Sbjct: 257 GFVAGLAQGLSL 268
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 44.9 bits (107), Expect = 2e-05
Identities = 53/281 (18%), Positives = 107/281 (38%), Gaps = 47/281 (16%)
Query: 52 NIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N+A LK L + LG G ++ LK GI + ++ ++ T + D +
Sbjct: 41 NVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFV-EVKGD-TRINVKILDEED 98
Query: 111 NQIT-IFHPGAMQLS----------YDDNCINNADIKIA-----IISPDNCCNMIKHIKK 154
+ T I PG ++S ++ + ++ + PD +I+ +++
Sbjct: 99 GEETEINFPG-PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQ 157
Query: 155 ILKLKIPFIFDPGQSLSMFTKEELIKIIK-KSSYIIVNEYESKLLVSKTSLSLQ------ 207
I D + E L+ ++ K I N E + L + +L+
Sbjct: 158 ---QGAKVILD-------TSGEALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAA 207
Query: 208 --KINEQVKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
+ E ++ +IV+ G G+ + + E P V+ +V G GD+ +G L G+
Sbjct: 208 RELLAEGIENVIVSLGADGA-LLVTAEGVYFASPPKVQ---VVSTVGAGDSMVAGFLAGL 263
Query: 264 INNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFK 304
+ R + G+ S +G P L ++ + +
Sbjct: 264 LKGKSLEEALRFAVACGAAAASQKG--TGIPDLDQLKKIYA 302
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 44.5 bits (106), Expect = 3e-05
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 26/255 (10%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFT----- 99
GG A N+A N+ L +V ++G D G L GI + + T
Sbjct: 48 GG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTR 106
Query: 100 --AQCFIVTDVNNNQITIFHPGAMQ--LSYDDNCINNADIKI------AIISPDNCCNMI 149
A+ + V+ + + L+ + +AD + +++P +I
Sbjct: 107 VLARNQQLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVI 166
Query: 150 KHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQK 208
+K P + DP G+ S + LI +K + V +++ + + + L
Sbjct: 167 AAARK---HGKPVLVDPKGKDFSRYRGATLITPNRKEAEAAVGACDTEAELVQAAEKLL- 222
Query: 209 INE-QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267
E ++ L+VTR E G +F I IP A + D TG GD + + +
Sbjct: 223 -EELDLEALLVTRSEKGMTLFTREGEPIHIPAQ-AREVYDVTGAGDTVIATLALALAAGA 280
Query: 268 DWYTTGRLSSLMGST 282
RL++
Sbjct: 281 SLEEACRLANAAAGV 295
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 44.5 bits (106), Expect = 3e-05
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 190 VNEYESKLLVSKTSL--SLQKINEQ--VKVLIVTRGELGSDIFLNNE-RKIKIPCVKADR 244
++E E L + L ++ + ++ + +L+VT G G + + + P V
Sbjct: 186 LSEEELCFLSGTSQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDP-- 243
Query: 245 IVDPTGCGDAFRSGVLFGIINNLDW 269
VD TG GDAF +G+L G+ W
Sbjct: 244 -VDTTGAGDAFVAGLLAGLSQAGLW 267
>gnl|CDD|238915 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like.
Fructoselysine is a fructoseamine formed by glycation, a
non-enzymatic reaction of glucose with a primary amine
followed by an Amadori rearrangement, resulting in a
protein that is modified at the amino terminus and at
the lysine side chains. Fructoseamines are typically
metabolized by fructoseamine-3-kinase, especially in
higher eukaryotes. In E. coli, fructoselysine kinase has
been shown in vitro to catalyze the phosphorylation of
fructoselysine. It is proposed that fructoselysine is
released from glycated proteins during human digestion
and is partly metabolized by bacteria in the hind gut
using a protein such as fructoselysine kinase. This
family is found only in bacterial sequences, and its
oligomeric state is currently unknown.
Length = 264
Score = 43.5 bits (103), Expect = 5e-05
Identities = 54/252 (21%), Positives = 91/252 (36%), Gaps = 43/252 (17%)
Query: 34 NVSFYSPTMKKEY-GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKY 90
NV + K Y GG A N+A K L + +G D G+ LK LG+ +
Sbjct: 8 NVVDKYLHLGKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISH 67
Query: 91 --IQKINSMFTAQCFIVTDVNNNQITI---------FHPGAMQLSYDDNCINNAD-IKIA 138
+++ + V V+ ++I HP L Y ++ D +
Sbjct: 68 CRVKEGENAVA----DVELVDGDRIFGLSNKGGVAREHPFEADLEY----LSQFDLVHTG 119
Query: 139 IISPDNCCNMIKHIKKILKL----KIPFIFDPGQSLSM-FTKEELIKIIKKSSY-IIVNE 192
I S + H++K L+ FD S + + L + +
Sbjct: 120 IYSHEG------HLEKALQALVGAGALISFD----FSDRWDDDYLQLVCPYVDFAFFSAS 169
Query: 193 YESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCG 252
S V + K++IVTRGE G+ I + + + +VD G G
Sbjct: 170 DLSDEEVKAKLKEAV--SRGAKLVIVTRGEDGA-IAYDGAVFYSVA-PRPVEVVDTLGAG 225
Query: 253 DAFRSGVLFGII 264
D+F +G L ++
Sbjct: 226 DSFIAGFLLSLL 237
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 42.7 bits (101), Expect = 2e-04
Identities = 52/234 (22%), Positives = 87/234 (37%), Gaps = 49/234 (20%)
Query: 48 GCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIV 105
G A N+A N+ L N +V ++GKD G + ++ LK GI + ++ N + ++
Sbjct: 51 GGAANVAKNIASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVL 110
Query: 106 TDVNNNQITIFHPGAMQLSYDDNCIN-------------NADIKIAIISP------DNCC 146
+ N Q+ ++L +++ ++S N
Sbjct: 111 S--RNQQL-------LRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQ 161
Query: 147 NMIKHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIKKSSYIIV------NEYESKLLV 199
MI ++ IP + DP G+ + LI K V E E +
Sbjct: 162 KMIDLARE---AGIPVLVDPKGKDFEKYRGATLITPNLKEFEEAVGKCKSEEELEERGQK 218
Query: 200 SKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGD 253
K L L L+VTR E G +F + + P +A + D TG GD
Sbjct: 219 LKEELDLS-------ALLVTRSEKGMTLFQEGK-PLHFP-ARAKEVYDVTGAGD 263
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein.
Length = 470
Score = 42.5 bits (100), Expect = 2e-04
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 163 IFDPG---QSLSMFTKEE---LIKIIKKSSYIIVNEYESKLLVS-----KTSLSLQKINE 211
FDPG +SL + T +E L +++ S +++ E++ L L +
Sbjct: 258 FFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPILAGQELLRPGI 317
Query: 212 QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYT 271
+ K ++V G GS I + P K + +VD GCGD+F + + G I+NL
Sbjct: 318 RTKWVVVKMGSKGS-ILVTRSSVSCAPAFKVN-VVDTVGCGDSFAAAIALGYIHNLPLVN 375
Query: 272 TGRLSSLMGS 281
T L++ +G+
Sbjct: 376 TLTLANAVGA 385
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in
bacteria, YegV-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 289
Score = 41.3 bits (97), Expect = 4e-04
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 161 PFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQK----INEQVKVL 216
+FDPG +S L ++ K N E+ + + + + I +
Sbjct: 158 TLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERGDPAAEASALRIYAKTAAP 217
Query: 217 IVTR-GELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRL 275
+V R G G+ I L + IP K + VD G GD G+L G+ + L
Sbjct: 218 VVVRLGSNGAWIRLPDGNTHIIPGFKV-KAVDTIGAGDTHAGGMLAGLAKGMSLADAVLL 276
Query: 276 SSLMGSTEISHQG 288
++ + ++ G
Sbjct: 277 ANAAAAIVVTRSG 289
>gnl|CDD|178237 PLN02630, PLN02630, pfkB-type carbohydrate kinase family protein.
Length = 335
Score = 40.6 bits (95), Expect = 6e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 211 EQVK---VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267
E+V+ +IVT G+ G I+ + ++++P A + VDPTG GD+F G + G++ L
Sbjct: 198 EEVRQKCCVIVTNGKKGCRIYWK-DGEMRVPPFPAIQ-VDPTGAGDSFLGGFVAGLVQGL 255
Query: 268 DWYTTGRLSSLMGSTEISHQG 288
L + GS + G
Sbjct: 256 AVPDAALLGNYFGSLAVEQVG 276
>gnl|CDD|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional.
Length = 345
Score = 40.4 bits (95), Expect = 7e-04
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 35/153 (22%)
Query: 140 ISPDNCCNMIKHIKKI---------LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIV 190
+SP+N + + K L L PFI S F E L++++ +
Sbjct: 172 VSPNN----VLQVAKHARESGKLFCLNLSAPFI-------SQFFFERLLQVLPYVDILFG 220
Query: 191 NEYESKLLVSK-------TSLSLQKINEQVK-------VLIVTRGELGSDIFLNNE-RKI 235
NE E+K +I K +++ T+G + I + +
Sbjct: 221 NEEEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSV 280
Query: 236 KIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD 268
+P + ++IVD G GDAF G L N D
Sbjct: 281 PVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKD 313
>gnl|CDD|178005 PLN02379, PLN02379, pfkB-type carbohydrate kinase family protein.
Length = 367
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 235 IKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ 290
+++P + VD TG GD F SG L+G+I L ++ + G + + GG+
Sbjct: 287 VRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCKVGACSGGSVVRALGGE 342
>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase.
Length = 330
Score = 38.1 bits (89), Expect = 0.004
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 175 KEELIKIIKKSSYIIVNEYESKLLVS------KTSLSLQKINEQVKVLIVTRGELGSDIF 228
+E ++ I ++ I V++ E + L T + L N +K+L+VT GE G +
Sbjct: 188 REGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDTVVKLWHPN--LKLLLVTEGEEGCRYY 245
Query: 229 LNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267
+ K ++ K VD TG GDAF G+L + +L
Sbjct: 246 -TKDFKGRVEGFKVK-AVDTTGAGDAFVGGLLSQLAKDL 282
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 38.0 bits (89), Expect = 0.004
Identities = 46/279 (16%), Positives = 101/279 (36%), Gaps = 50/279 (17%)
Query: 52 NIAYNLKLLNGNPLIVSILGKDGSSYL-KHLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N++ LK L + + + LG ++ L+ GI ++ ++ T + + +
Sbjct: 40 NVSRVLKNLGVDVVALGFLGGFTGDFIEALLREEGIKTDFV-RVPGE-TRINVKIKEPSG 97
Query: 111 NQITIFHPGAMQLSYDDNCINN---------ADIKIAIIS-------PDNCCNMIKHIKK 154
+ + PG + + A+ ++S P + +
Sbjct: 98 TETKLNGPGP---EISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPD---FYAELIA 151
Query: 155 IL-KLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIV-NEYESKLLVSKTSLSLQKINE- 211
+ + I D + E L +K ++I N+ E + L + +L++I E
Sbjct: 152 LAREKGAKVILD-------TSGEALRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEA 204
Query: 212 -------QVKVLIVTRGELGSDIFLNNERKIKI--PCVKADRIVDPTGCGDAFRSGVLFG 262
+ ++++ G G+ + + E + P +V G GD+ +G L G
Sbjct: 205 ARELLDLGAENVLISLGADGA-LLVTKEGALFAQPP---KGEVVSTVGAGDSMVAGFLAG 260
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301
+ + L RL+ GS +G P +I++
Sbjct: 261 LESGLSLEEALRLAVAAGSAAAFSEG--TGLPDPEDIEE 297
>gnl|CDD|182090 PRK09813, PRK09813, fructoselysine 6-kinase; Provisional.
Length = 260
Score = 37.4 bits (87), Expect = 0.005
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 214 KVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLD 268
V+IVT GE GS I + + + +VD G GD+F +G L G + +
Sbjct: 186 GVVIVTLGENGS-IAWDGAQFWRQAPEPVT-VVDTMGAGDSFIAGFLCGWLAGMT 238
>gnl|CDD|238918 cd01943, MAK32, MAK32 kinase. MAK32 is a protein found primarily
in fungi that is necessary for the structural stability
of L-A particles. The L-A virus particule is a
specialized compartment for the transcription and
replication of double-stranded RNA, known to infect
yeast and other fungi. MAK32 is part of the host
machinery used by the virus to multiply.
Length = 328
Score = 36.9 bits (86), Expect = 0.010
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 31/169 (18%)
Query: 138 AIISPDNCCNMIKHIKKILKLKIP-------FIFDPGQSLSMFTKEELIKIIKKSSYIIV 190
I SP+ C +++ I + KL +++P E L +++ + V
Sbjct: 126 LICSPERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDP--ENLEDLLQALPRVDV 183
Query: 191 ---NEYESKLLVS----------KTSLSLQKINE------QVKVLIVTRGELGSDIFLNN 231
N E+ L+ + LQ + +++ G+LG + +
Sbjct: 184 FSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSAD 243
Query: 232 ERKIK-IPCV--KADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSS 277
+P K+ ++VDPTG G++F G G+ S
Sbjct: 244 SGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKSIDEACIYGS 292
>gnl|CDD|238914 cd01939, Ketohexokinase, Ketohexokinase (fructokinase, KHK)
catalyzes the phosphorylation of fructose to
fructose-1-phosphate (F1P), the first step in the
metabolism of dietary fructose. KHK can also
phosphorylate several other furanose sugars. It is
found in higher eukaryotes where it is believed to
function as a dimer and requires K(+) and ATP to be
active. In humans, hepatic KHK deficiency causes
fructosuria, a benign inborn error of metabolism.
Length = 290
Score = 35.5 bits (82), Expect = 0.029
Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 24/196 (12%)
Query: 85 GISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDD----NCINNADIKIAII 140
IS+ Y + I+ + I + + +++YDD + I
Sbjct: 78 DISHCYRKDIDEPA-SSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIHFEGR 136
Query: 141 SPDNCCNMIKHI------KKILKLKIPF-IFDPGQSLSMFTKEELIKIIKKSSYIIVNEY 193
+PD M++HI + +++ I + P EEL+++ + V++
Sbjct: 137 NPDETLRMMQHIEEHNNRRPEIRITISVEVEKPR--------EELLELAAYCDVVFVSKD 188
Query: 194 ESKLLVSKTSLS-LQKINEQVK---VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPT 249
++ K+ L+ + K +L+ T G+ G+ + + P K R+VD
Sbjct: 189 WAQSRGYKSPEECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTL 248
Query: 250 GCGDAFRSGVLFGIIN 265
G GD F + V++ +
Sbjct: 249 GAGDTFNAAVIYALNK 264
>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the
different classes of PRXs including many proteins
originally known as bacterioferritin comigratory
proteins (BCP), based on their electrophoretic mobility
before their function was identified. PRXs are
thiol-specific antioxidant (TSA) proteins also known as
TRX peroxidases and alkyl hydroperoxide reductase C22
(AhpC) proteins. They confer a protective antioxidant
role in cells through their peroxidase activity in which
hydrogen peroxide, peroxynitrate, and organic
hydroperoxides are reduced and detoxified using reducing
equivalents derived from either TRX, glutathione,
trypanothione and AhpF. They are distinct from other
peroxidases in that they have no cofactors such as
metals or prosthetic groups. The first step of
catalysis, common to all PRXs, is the nucleophilic
attack by the catalytic cysteine (also known as the
peroxidatic cysteine) on the peroxide leading to
cleavage of the oxygen-oxygen bond and the formation of
a cysteine sulfenic acid intermediate. The second step
of the reaction, the resolution of the intermediate,
distinguishes the different types of PRXs. The presence
or absence of a second cysteine (the resolving cysteine)
classifies PRXs as either belonging to the 2-cys or
1-cys type. The resolving cysteine of 2-cys PRXs is
either on the same chain (atypical) or on the second
chain (typical) of a functional homodimer. Structural
and motif analysis of this growing family supports the
need for a new classification system. The peroxidase
activity of PRXs is regulated in vivo by irreversible
cysteine over-oxidation into a sulfinic acid,
phosphorylation and limited proteolysis.
Length = 140
Score = 30.2 bits (69), Expect = 0.74
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 132 NADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLS-----MFTKEELIKIIKKSS 186
++ +S D+ + +K L P + DP + + K + +++
Sbjct: 54 KGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARAT 113
Query: 187 YII 189
+II
Sbjct: 114 FII 116
>gnl|CDD|183502 PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed.
Length = 324
Score = 30.1 bits (68), Expect = 1.3
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 123 LSYDDNCINNADIKIAIISPDNCCNMIKHIKK------ILKLKIP----FIFDPGQSLSM 172
L+YD+ +N ++ A + P +K K +LK+++P ++ + +
Sbjct: 163 LTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVV 222
Query: 173 FTKEELIKIIKKSS 186
+TKEE + K+
Sbjct: 223 YTKEEAAQHFKEQD 236
>gnl|CDD|222482 pfam13970, DUF4221, Domain of unknown function (DUF4221). This
family of bacterial proteins contains highly conserved
asparagine and cysteine residues. The function is not
known.
Length = 310
Score = 30.0 bits (68), Expect = 1.4
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 58 KLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH 117
+ + + I K L L Y I K+ T++ T N + F
Sbjct: 150 EFIEKIKGLAIIDLKTKKVKLIPLDYPDIFKKFRINWGGGLTSEYSYTTFDNGQIVISFA 209
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 1.6
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 19 GKFSNSLLPDQL-DKINVSFYSP-TMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--G 74
G+ +N LL ++ +++ +F++P + GG AG +A L L G + LG D G
Sbjct: 213 GRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYG 272
Query: 75 SSYLKHLKYLGISNKYIQKINSMFTA 100
+ L +L + + + TA
Sbjct: 273 QAMLYYLNVNKVQTRSVCIDGKRATA 298
>gnl|CDD|182111 PRK09850, PRK09850, pseudouridine kinase; Provisional.
Length = 313
Score = 28.8 bits (64), Expect = 3.7
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG NIA NL LL ++S +G D G S L G+ Y+ K C I
Sbjct: 40 GGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGV---YVDK--------CLI 88
Query: 105 VTDVNNNQITIF--HPGAMQLSYDDNCINNA 133
V N + + G M ++ +D I+NA
Sbjct: 89 VPGENTSSYLSLLDNTGEMLVAINDMNISNA 119
>gnl|CDD|182165 PRK09954, PRK09954, putative kinase; Provisional.
Length = 362
Score = 28.7 bits (64), Expect = 3.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGIS 87
GG NIA+NL LL + ++S +G D G + L+ + G++
Sbjct: 93 GGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVN 135
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 29.2 bits (66), Expect = 3.9
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 150 KHIKKILKL----KIPFIF--DPGQSLSMFTKEELIKI--------IKKSSYIIVNEYES 195
+ I +L L KI + + Q L + TK+ +K I+ I + E
Sbjct: 578 EPIVNLLSLEKGEKITAVLPVNDDQYLFLATKKGYVKKTSLSEFKNIRSKGKIAIKLKEG 637
Query: 196 KLLVSKTSLSLQKINEQVKVLIVTRGELGSDI-FLNNERKI 235
LV S+SL + +L+VT G + F +E +
Sbjct: 638 DELV---SVSLTSDGDD-DILLVT--SNGKALRFPESEVRE 672
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 29.0 bits (66), Expect = 4.2
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 148 MIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQ 207
M+K I + + G +S + E+ I + YI NEY K+ +
Sbjct: 521 MLKLILTFYDEAFKAL-EKGVPVSEILELEVRDRIARLKYIPENEYLEKI-----DEIFE 574
Query: 208 KINEQVKVLI 217
K+ E+++ LI
Sbjct: 575 KLEEELEELI 584
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 28.4 bits (64), Expect = 5.0
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 137 IAIISPD-NCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYES 195
I II+ + N +K + +L+ +P + K+EL ++IK + I +E
Sbjct: 117 IIIIASELNIPKELKDLITVLEFPLPTESE--------IKKELTRLIKSLNIKIDSELLE 168
Query: 196 KLLVSKTSLSLQKINEQVKVLIVTRGEL---GSDIFLNNERKI 235
L + LSL++I + +I T + + L +++I
Sbjct: 169 NLTRACQGLSLERIRRVLSKIIATYKTIDENSIPLILEEKKQI 211
>gnl|CDD|239339 cd03041, GST_N_2GST_N, GST_N family, 2 repeats of the N-terminal
domain of soluble GSTs (2 GST_N) subfamily; composed of
uncharacterized proteins. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes. The
GST fold contains an N-terminal TRX-fold domain and a
C-terminal alpha helical domain, with an active site
located in a cleft between the two domains.
Length = 77
Score = 26.5 bits (59), Expect = 5.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 157 KLKIPFIFDPGQSLSMFTKEELIKIIKK 184
K+++P++ DP + MF +++K + K
Sbjct: 48 KVQVPYLVDPNTGVQMFESADIVKYLFK 75
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 27.8 bits (62), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 105 VTDVNNNQITIFHPGAMQLSYDDN 128
V D + + + H AM+L +DDN
Sbjct: 90 VKDAGLHNVELVHGNAMELPFDDN 113
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 27.9 bits (63), Expect = 7.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 145 CCNMIKHIKKILKLKIPFI 163
N+ KHI+ I K +P +
Sbjct: 342 FANLRKHIENIKKFGVPVV 360
>gnl|CDD|237925 PRK15208, PRK15208, long polar fimbrial chaperone LpfB;
Provisional.
Length = 228
Score = 27.6 bits (61), Expect = 8.3
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 109 NNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCC---NMIKHIKKILKLKIPFIFD 165
NQI + +P A L+++ N DI+ A + P + K+ ++K I D
Sbjct: 156 AGNQIKVENPSAFNLTFNQFYANGRDIEKAGMVPAKGSLNIELPAGTGKVSEVKYNIIND 215
Query: 166 PGQSLSMFTKE 176
G + M TK
Sbjct: 216 FGTAGEMLTKR 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.405
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,734,412
Number of extensions: 1517359
Number of successful extensions: 1528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1488
Number of HSP's successfully gapped: 86
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)