RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8856
(312 letters)
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics
consortium, TBSGC; 1.50A {Mycobacterium tuberculosis}
PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Length = 334
Score = 331 bits (851), Expect = e-114
Identities = 97/312 (31%), Positives = 154/312 (49%), Gaps = 4/312 (1%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
M + GS+A D++MRF G+FS LLP+ L K+++SF + GG AGN+A+ + +L
Sbjct: 11 MTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLVDDLVMHRGGVAGNMAFAIGVL 70
Query: 61 NGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGA 120
G +V G D + Y LK G++ ++ + TA+ TDV+ QI F+PGA
Sbjct: 71 GGEVALVGAAGADFADYRDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFYPGA 130
Query: 121 MQLSY----DDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKE 176
M + D ++ II ++ M H ++ KL + F DP Q L+ + E
Sbjct: 131 MSEARNIKLADVVSAIGKPELVIIGANDPEAMFLHTEECRKLGLAFAADPSQQLARLSGE 190
Query: 177 ELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIK 236
E+ +++ ++Y+ N+YE LL+SKT S + Q+ + + T G G D+ + I
Sbjct: 191 EIRRLVNGAAYLFTNDYEWDLLLSKTGWSEADVMAQIDLRVTTLGPKGVDLVEPDGTTIH 250
Query: 237 IPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL 296
+ V DPTG GDAFR+G L G L + +L SL+ + G Q+
Sbjct: 251 VGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSAQLGSLVAVLVLESTGTQEWQWDY 310
Query: 297 SEIDQRFKEAFG 308
R A+G
Sbjct: 311 EAAASRLAGAYG 322
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
3b1r_A*
Length = 326
Score = 328 bits (843), Expect = e-113
Identities = 152/311 (48%), Positives = 218/311 (70%), Gaps = 2/311 (0%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
M +LICGS+A+DNIM FEG+F +LPDQ+ IN+SF PTM++E+GGCAGNIAY L LL
Sbjct: 1 MATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLL 60
Query: 61 NGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPG 119
G+ ++ LG YL + LG+S +Y++ + ++AQ I TD++NNQIT FHPG
Sbjct: 61 GGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPG 120
Query: 120 AMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELI 179
AM S+ ++ DIK+AI+ PD M++H +++ + +PFIFDPGQ L +F L
Sbjct: 121 AMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLR 180
Query: 180 KIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPC 239
+ I+ ++YI VN+YE+KL+ KT S +I +V+ LI+TRGE G+ I + + +IP
Sbjct: 181 RSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIR-HRDGTEQIPA 239
Query: 240 VKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEI 299
V+A+R++DPTGCGDAFR G+L+GI + DW T GRL+SLMG+ +I+HQG Q + P+ +EI
Sbjct: 240 VRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEI 299
Query: 300 DQRFKEAFGYR 310
D RF+ AFGYR
Sbjct: 300 DARFETAFGYR 310
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 295 bits (757), Expect = e-100
Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 16/308 (5%)
Query: 1 MNSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKL 59
M + C G A D I ++ + N S P+ +K YGG A N A +K
Sbjct: 5 MEKITCVGHTALDYIFNV----------EKFPEPNTSIQIPSARKYYGGAAANTAVGIKK 54
Query: 60 LNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH 117
L N ++S +G D S Y ++LK L I+ + T + +I TD +NNQIT F
Sbjct: 55 LGVNSELLSCVGYDFKNSGYERYLKNLDINISKLYYSEEEETPKAWIFTDKDNNQITFFL 114
Query: 118 PGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEE 177
GA + + N + +I I+ + +K KK FDPGQ L ++KE
Sbjct: 115 WGAAKHY-KELNPPNFNTEIVHIATGDPEFNLKCAKK-AYGNNLVSFDPGQDLPQYSKEM 172
Query: 178 LIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKI 237
L++II+ ++++ +N++E + + + + E+V LIVT+G GS I+ ++KI+I
Sbjct: 173 LLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERVDALIVTKGSKGSVIY-TKDKKIEI 231
Query: 238 PCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLS 297
PC+KA +++DPTG GD++R+G L + D G + + S + +G Q + P+
Sbjct: 232 PCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGCQTNLPTWD 291
Query: 298 EIDQRFKE 305
++ +R ++
Sbjct: 292 KVVERLEK 299
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Length = 306
Score = 265 bits (680), Expect = 2e-88
Identities = 66/311 (21%), Positives = 127/311 (40%), Gaps = 33/311 (10%)
Query: 4 LICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGN 63
G L D ++ + +P S ++ +GG AGN A +
Sbjct: 24 AYFGHLNIDVLISVDS------IPR-----EGSVNVKDLRPRFGGTAGNFAIVAQKFRIP 72
Query: 64 PLIVSILGKDG-SSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQ 122
+ S +G YL ++ +GI+ +++K C+I TD Q++ H GAM
Sbjct: 73 FDLYSAVGMKTHREYLAMIESMGINTGHVEKFEDESGPICYIATD-GKKQVSFMHQGAMA 131
Query: 123 LSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKII 182
++ + + P+ ++ ++ IFDP Q + ++K+EL K
Sbjct: 132 -AWAPQLADEYEYVHFSTGPN-------YLDMAKSIRSKIIFDPSQEIHKYSKDELKKFH 183
Query: 183 KKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKA 242
+ S I N++E ++ T LS K+ IVT GE GS +F + +K P + +
Sbjct: 184 EISYMSIFNDHEYRVFREMTGLSSPKV-----TTIVTNGERGSSLF-MDGKKYDFPAIPS 237
Query: 243 DRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEID-- 300
D G GD+FR+G+ + N +++ + G + ++ +++
Sbjct: 238 S--GDTVGAGDSFRAGLYLALYNRRSIEKGMIYGTIIAHH-VIDDGIENFSLNMEDLERE 294
Query: 301 -QRFKEAFGYR 310
+ ++ F R
Sbjct: 295 TENYRRMFTKR 305
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II,
NYSGXRC, struc genomics, protein structure initiative;
HET: AMP; 1.88A {Chlorobaculum tepidum}
Length = 313
Score = 208 bits (531), Expect = 5e-66
Identities = 71/318 (22%), Positives = 119/318 (37%), Gaps = 36/318 (11%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
++ L+ GSLAFD+I G+ N+L GG + IA +
Sbjct: 3 LSLLVIGSLAFDDIETPFGRSDNTL---------------------GGSSTYIALSASYF 41
Query: 61 NGNPL-IVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP 118
P+ +V ++G D G + L I + IQ I T + + N
Sbjct: 42 TDEPIRMVGVVGSDFGKEHFDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYDMNTRDTLDT 101
Query: 119 GAMQLSYDDNCINNA--DIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKE 176
+ D + D K + + +K + +I + D E
Sbjct: 102 QLNVFAEFDPHVPQYYRDSKFVCLGNIDPELQLKVLDQI-DDPKLVVCDTMNFWIEGKPE 160
Query: 177 ELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKINEQ-VKVLIVTRGELGSDIFLNNER 233
EL K++ + IVN+ E++LL +L + I E K LI+ +GE G+ +F +
Sbjct: 161 ELKKVLARVDVFIVNDSEARLLSGDPNLVKTARIIREMGPKTLIIKKGEHGALLF-TDNG 219
Query: 234 KIKIPCVKADRIVDPTGCGDAFRSGVLFGI-----INNLDWYTTGRLSSLMGSTEISHQG 288
P + I DPTG GD F G + + + + S M S + G
Sbjct: 220 IFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEMRKAVLYGSAMASFCVEQFG 279
Query: 289 GQKHCP-SLSEIDQRFKE 305
++ L E+D R++
Sbjct: 280 PYRYNDLDLLEVDDRYQS 297
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase,
isoform A, structural genomics, structural genomics
consortium, SGC transferase; 1.85A {Homo sapiens} PDB:
2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A*
3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Length = 312
Score = 124 bits (313), Expect = 1e-33
Identities = 44/261 (16%), Positives = 84/261 (32%), Gaps = 26/261 (9%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG A N L LL + + L L+ + +Y + +
Sbjct: 54 GGNASNSCTILSLLGAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATV 113
Query: 105 VTDVNNNQITI-FHPGA-MQLSYDDNCINNADIKIA-II-----SPDNCCNMIKHIKKI- 155
+ + + TI ++ + +S D D+ I + M++ I
Sbjct: 114 IINEASGSRTILYYDRSLPDVSATD--FEKVDLTQFKWIHIEGRNASEQVKMLQRIDAHN 171
Query: 156 ----LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLL----VSKTSLSLQ 207
+ KI + +EEL ++ + V++ +K L + L
Sbjct: 172 TRQPPEQKIRVSVEVE-----KPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLY 226
Query: 208 KINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267
+ VL+ E G+D + + + R+VD G GD F + V+F +
Sbjct: 227 GRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGR 286
Query: 268 DWYTTGRLSSLMGSTEISHQG 288
R + + QG
Sbjct: 287 SVQEALRFGCQVAGKKCGLQG 307
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 111 bits (279), Expect = 8e-29
Identities = 40/304 (13%), Positives = 92/304 (30%), Gaps = 50/304 (16%)
Query: 2 NSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
+ + G ++ D + + YGG A LL
Sbjct: 12 HMITFIGHVSKDVNVV----------------------DGKREIAYGGGVVMGAITSSLL 49
Query: 61 NGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGA 120
+++ ++ S L+ G+ +++ + + + + A
Sbjct: 50 GVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPRTTSIE--NRYGSDPDTRESFLISAA 107
Query: 121 MQLSYDDNCINNADIKIAIISP----DNCCNMIKHIKKILKLKIPFIFDP--------GQ 168
+ D + + + I+P + ++I +++ + D +
Sbjct: 108 DPFTESD--LAFIEGEAVHINPLWYGEFPEDLIPVLRR---KVMFLSADAQGFVRVPENE 162
Query: 169 SLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKINEQ-VKVLIVTRGELGS 225
L E K +K V+ E++ L L + I K+++ T G
Sbjct: 163 KLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGAKIILATHAS-GV 221
Query: 226 DIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINN-LDWYTTGRLSSLMGSTEI 284
+F N + TG GD + L G + + + ++ + S ++
Sbjct: 222 IVFDGNFYEASFRSWSL---EGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKM 278
Query: 285 SHQG 288
H G
Sbjct: 279 RHPG 282
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 106 bits (266), Expect = 8e-27
Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 29/293 (9%)
Query: 41 TMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMF 98
+ GG A N A + L ++S +GKD G L H + I + +++ S+
Sbjct: 37 RIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKENIDIQSLKQDVSID 96
Query: 99 TAQCFIVTDVN-NNQITIFHPGA-MQLSYDDNCINNADIKIAII--------SPDNCCNM 148
T+ + + G+ +L+ DD ++ A A + SP
Sbjct: 97 TSINVGLVTEDGERTFVTNRNGSLWKLNIDD--VDFARFSQAKLLSLASIFNSPLLDGKA 154
Query: 149 IKHIKKILK-LKIPFIFD-----PGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKT 202
+ I K ++ D ++L +++ + + Y+ N E+KLL K
Sbjct: 155 LTEIFTQAKARQMIICADMIKPRLNETL-----DDICEALSYVDYLFPNFAEAKLLTGKE 209
Query: 203 SLS--LQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGV 259
+L VK +++ G+ G + +K+P V +D G GD F SG
Sbjct: 210 TLDEIADCFLACGVKTVVIKTGKDGC-FIKRGDMTMKVPAVAGITAIDTIGAGDNFASGF 268
Query: 260 LFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEAFGYRYN 312
+ ++ + R ++ + + G + ++Q +E G ++
Sbjct: 269 IAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEGEGHH 321
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 106 bits (266), Expect = 1e-26
Identities = 58/278 (20%), Positives = 105/278 (37%), Gaps = 29/278 (10%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG NIA N+ + N +SILG D G S ++H K +G I T
Sbjct: 42 GGVCRNIAENMARVGVNTNFMSILGNDEHGKSIVEHSKKIGYHMDDSMVIEGGSTPTYLA 101
Query: 105 VTDVN-NNQITIFHPGAM-QLSYDD-----NCINNADIKIA--IISPDNCCNMIKHIKKI 155
+ D N I ++ ++ D NA+ + ++++ K
Sbjct: 102 ILDENGEMVSAIADMKSIGAMNTDFIDSKREIFENAEYTVLDSDNPEI-----MEYLLKN 156
Query: 156 LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLV-----SKTSLSL--QK 208
K K FI DP S + +IK I N +E+++L L
Sbjct: 157 FKDKTNFILDPV---SAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLIKASNY 213
Query: 209 INEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNL 267
+K + ++ G + + KI + D + + TG GD+F +G+ +G +N +
Sbjct: 214 FLGLGIKKVFISLDADGI-FYNDGVSCGKIKATEVD-VKNVTGAGDSFVAGLGYGYMNKM 271
Query: 268 DWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
+ + M + ISH+ +L + + ++
Sbjct: 272 PIEDIVKFAMTMSNITISHEETIHPDMALDTVLAKLEK 309
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 100 bits (252), Expect = 1e-24
Identities = 57/267 (21%), Positives = 98/267 (36%), Gaps = 36/267 (13%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG AGN A + L G + D G + ++ G+ + K TA+ I
Sbjct: 80 GGSAGNTAAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMI 139
Query: 105 -VTDVNNNQITIF-HPGA-MQLSYDDNCINNADIKIAII--------SPDNCCNMIKHIK 153
VT+ + + ++ + GA ++L +D + + A + P I
Sbjct: 140 FVTE--DGERSMNTYLGACVELGPED--VEADVVADAKVTYFEGYLWDPPRAKEAILDCA 195
Query: 154 KILK---LKIPFIFDPGQSLS-----MFTKEELIKIIKKSS--YIIVNEYESKLLVSKTS 203
+I ++ +LS + E + +++ + N E+ L
Sbjct: 196 RIAHQHGREMSM------TLSDSFCVDRYRGEFLDLMRSGKVDIVFANRQEALSLYQTDD 249
Query: 204 L--SLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLF 261
+L +I K+ VT E G+ I ER + ++ +VD TG GD F SG L+
Sbjct: 250 FEEALNRIAADCKIAAVTMSENGAVILKGRER-YYVNAIRIREVVDTTGAGDLFASGFLY 308
Query: 262 GIINNLDWYTTGRLSSLMGSTEISHQG 288
G G+L L I G
Sbjct: 309 GYTQGRSLEDCGKLGCLAAGIVIQQIG 335
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 99.6 bits (249), Expect = 3e-24
Identities = 70/302 (23%), Positives = 115/302 (38%), Gaps = 33/302 (10%)
Query: 25 LLPDQLDKINVSF-YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHL 81
++ + S S + +GG NIA NL L ++S LG D G+ L L
Sbjct: 34 MISTE---EVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVL 90
Query: 82 KYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGA-MQLSYDDNCINNADIK---- 136
K I IQ+ T + V+ + + A M L DD I IK
Sbjct: 91 KGEQIITDGIQQDKERRTTIVY-VSKSTRTPDWLPYREADMYLQEDD--IIFELIKRSKV 147
Query: 137 -----IAIISPDNCCNMIKHIKKILKLKIPFIFDP-------GQSLSMFTKEELIKIIKK 184
+ IK + FDP + + +II +
Sbjct: 148 FHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDG--AGVVEEIISR 205
Query: 185 SSYIIVNEYESKLLVSKTSL--SLQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVK 241
+ ++ + +++ L S +++ E VK +I+T GE G E I+IP
Sbjct: 206 ADFVKPSLDDARHLFGPDSPENYVKRYLELGVKAVILTLGEEGVIASDGEEI-IRIPAFS 264
Query: 242 ADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301
D VD TG GDAF SG + G+++ + +L + + + +I G PS +I +
Sbjct: 265 ED-AVDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAFKIRGVGALSPVPSKEDIIK 323
Query: 302 RF 303
+
Sbjct: 324 EY 325
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 96.9 bits (242), Expect = 3e-23
Identities = 47/315 (14%), Positives = 101/315 (32%), Gaps = 45/315 (14%)
Query: 25 LLPDQLDKINVSF-YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHL 81
L + N + T K GG NI L + + D G ++
Sbjct: 24 LNAVE---YNRPMEETMTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRFIESYM 80
Query: 82 KYLGISNKYIQKI-NSMFTAQCFIVTDVNNNQITIFH--PGA-MQLSYDDNCINNADIK- 136
+ +G+ + T F + + A + LS ++ +N A I+
Sbjct: 81 RGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEE--VNEAYIRR 138
Query: 137 --------IAIISPDNCCNMIKHIKKILKLKIPFIFDP-------GQSLSMFTKEELIKI 181
A+ + ++K I+ + + +F+ +
Sbjct: 139 SKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEET--AVYYSLV 196
Query: 182 IKKSSYIIVNEYESKLLVSKTSL-SLQKI-----NEQVKVLIVTRGELGSDIFLNNERKI 235
++S +I E +L ++T + +++++ G GS +
Sbjct: 197 AEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAY 256
Query: 236 KIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHC-- 293
+ K ++ G GD++ S L+ +I+ T + S S +S
Sbjct: 257 RGYAYKTK-VLKTFGAGDSYASAFLYALISGKGIETALKYGSASASIVVSKHS----SSD 311
Query: 294 --PSLSEIDQRFKEA 306
PS+ EI+ ++
Sbjct: 312 AMPSVEEIEALIEKD 326
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 96.4 bits (241), Expect = 3e-23
Identities = 57/311 (18%), Positives = 115/311 (36%), Gaps = 44/311 (14%)
Query: 25 LLPDQLDKINVSF-YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHL 81
+ P Q V + K GG A N++ N ++S +G D G L L
Sbjct: 21 IYPLQ---SGVGLADVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEYLLAEL 77
Query: 82 KYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIF--HPGA--MQLSYDDNCINNADIK- 136
+ LG+ N+Y+ + T F ++ F P A + + D ++ D++
Sbjct: 78 ERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESAD--VSLDDVRE 135
Query: 137 --------IAIISPDNCCNMIKHIKKILKLKIPFIFDP-------GQSLSMFTKEELIKI 181
S + + I + IFD ++
Sbjct: 136 ADILWFTLTGF-SEEPSRGTHREILTTRANRRHTIFDLDYRPMFWESPEEA--TKQAEWA 192
Query: 182 IKKSSYIIVNEYESKLLVSKTSL--SLQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIP 238
++ S+ + N+ E ++ V +T + + + E+ V++ IV +G G +E +++P
Sbjct: 193 LQHSTVAVGNKEECEIAVGETEPERAGRALLERGVELAIVKQGPKGVMAMTKDET-VEVP 251
Query: 239 CVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHC----P 294
D +++ G GDAF + G+++ R ++ G+ S C P
Sbjct: 252 PFFVD-VINGLGAGDAFGGALCHGLLSEWPLEKVLRFANTAGALVASRLE----CSTAMP 306
Query: 295 SLSEIDQRFKE 305
+ E++ +
Sbjct: 307 TTDEVEASLNQ 317
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 96.1 bits (240), Expect = 4e-23
Identities = 57/328 (17%), Positives = 118/328 (35%), Gaps = 41/328 (12%)
Query: 1 MNSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTM--KKEYGGCAGNIAYNL 57
++ + G + + ++ + I F P + G +
Sbjct: 3 LSKVFTIGEILVE------------IMASK---IGQPFDQPGIWNGPYPSGAPAIFIDQV 47
Query: 58 KLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITI 115
L I+S +G D G + L G+ + I + T F+ + ++ I
Sbjct: 48 TRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFI 107
Query: 116 FH--PGA-MQLSYDD---NCINNADI----KIAIISPDNCCNMIKH-IKKILKLKIPFIF 164
F+ A +LS N + + ++ S + + +K + + F
Sbjct: 108 FNIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSF-HMVDAVKKAVTIVKANGGVISF 166
Query: 165 DPGQSLSMFTKEELIK----IIKKSSYIIVNEYESKLLVSKTSL--SLQKINEQ-VKVLI 217
DP M E+ +++ + + +E E LL ++ ++ E+ VK +I
Sbjct: 167 DPNIRKEMLDIPEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPERAIAGFLEEGVKEVI 226
Query: 218 VTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSS 277
V RG G+ + NE+ + + VDPTG GD F + D + + ++
Sbjct: 227 VKRGNQGASYYSANEQ-FHVESYPVE-EVDPTGAGDCFGGAWIACRQLGFDAHRALQYAN 284
Query: 278 LMGSTEISHQGGQKHCPSLSEIDQRFKE 305
G+ ++ +G + L EI+ +
Sbjct: 285 ACGALAVTRRGPMEGTSRLMEIETFIQR 312
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 91.7 bits (228), Expect = 4e-21
Identities = 51/317 (16%), Positives = 92/317 (29%), Gaps = 75/317 (23%)
Query: 28 DQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGK-----DGSSYLKHLK 82
LD+ N + GG A N ++ L P +G G +
Sbjct: 76 STLDQFNPTSLP-------GGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCD 128
Query: 83 YLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSYDDNCINNADIKIAII 140
G++ ++ T C + + + T H GA + A+I
Sbjct: 129 KEGLATRF-MVAPGQSTGVCAVLINEKERTLCT--HLGACGSFRLPE--DWTTFASGALI 183
Query: 141 ----------SPDNCCNMIKHIKKILKLKI------PFIFDPGQSLSMFTKEELIKIIKK 184
+P N + + I PF + K+ + ++
Sbjct: 184 FYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVE-------LYKDAMQSLLLH 236
Query: 185 SSYIIVNEYESKLL---------------------------VSKTSLSLQKINEQVKVLI 217
++ + NE E L + L+ + K+++
Sbjct: 237 TNILFGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVV 296
Query: 218 VTRGELGSDIFLNNER------KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYT 271
+TRG ++ +P V A++IVD G GDAF G L+ +
Sbjct: 297 MTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQ 356
Query: 272 TGRLSSLMGSTEISHQG 288
+ I H G
Sbjct: 357 CIMCGNACAQDVIQHVG 373
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
gambiae}
Length = 365
Score = 90.1 bits (224), Expect = 9e-21
Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 49/282 (17%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGK-----DGSSYLKHLKYLGISNKYIQKINSMFTAQ 101
GG N + + P G + G++ +Y Q+ + T
Sbjct: 80 GGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQY-QRSATSPTGT 138
Query: 102 CFI-VTDVNNNQITIFHPGAMQLSYDD--NCINNADIKIAII----------SPDNCCNM 148
C + VT + A + + + N A ++ A S ++ ++
Sbjct: 139 CAVLVTGTQRSLCA-NLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSV 197
Query: 149 IKH-----IKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTS 203
K ++ L PF+ F K L +I + NE E+ L + +
Sbjct: 198 AKEAAATGRMFMMNLSAPFVPQ-------FYKNNLEEIFPYVDVLFGNETEAIALAKEFN 250
Query: 204 LSLQKINE--------------QVKVLIVTRGELGSDIFLNNERKIK---IPCVKADRIV 246
+ + E + +++I+T+G + ++ + + +++V
Sbjct: 251 YGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMV 310
Query: 247 DPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288
D G GDAF G L ++ + + I G
Sbjct: 311 DTNGAGDAFVGGFLAQLLQSRTVDVCIKCGIWAAREIIQRSG 352
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor
CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Length = 347
Score = 90.1 bits (224), Expect = 1e-20
Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 55/285 (19%)
Query: 47 GGCAGNIAYNLK--LLNGNPLIVSILGK-----DGSSYLKHLKYLGISNKYIQKINSMFT 99
GG N+A + V+ +G G + ++ GI + +
Sbjct: 64 GGSGLNVARVAQWMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAV-EHTTKAGS 122
Query: 100 AQCFI-VTDVNNNQITIFHPGA-MQLSYDDNCINNADIKIAI--------------ISPD 143
C + +T + GA LS + + + + A+ + +
Sbjct: 123 GACAVCITGKERTLVA--DLGAANHLSSEH--MRSPAVVRAMDESRIFYFSGFTLTVDVN 178
Query: 144 NCCNMIKH-----IKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLL 198
+ + ++ L PFI F +L +++ + I+ N +E+K
Sbjct: 179 HVLQACRKAREVDGLFMINLSAPFIMQ-------FFSAQLGEVLPYTDIIVANRHEAKEF 231
Query: 199 --------------VSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERK-IKIPCVKAD 243
+ + + +V++ TR + + + + + +P + D
Sbjct: 232 ANMMKWDTDCVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQD 291
Query: 244 RIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288
+++D G GDAF G L D I G
Sbjct: 292 KVIDMNGAGDAFMGGFLSAYAVGKDLRRCCETGHYTAQEVIQRDG 336
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 87.2 bits (217), Expect = 5e-20
Identities = 45/293 (15%), Positives = 114/293 (38%), Gaps = 31/293 (10%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
+ +K G N I++ +G D G + ++ L+ G+ +++
Sbjct: 24 HVSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDP 83
Query: 96 SMFTAQCFIVTDVNNNQITIFH----PGA-MQLSYDDNCINNADIKIA-I-----ISP-- 142
S T FI + A +LS +D ++ +K A + I+
Sbjct: 84 SAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPED--VDEEYVKSADLVHSSGITLAI 141
Query: 143 -DNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEE----LIKIIKKSS--YIIVNEYES 195
+ +I + FD L +++ EE ++K++ K ++I + +S
Sbjct: 142 SSTAKEAVYKAFEIASNRS---FDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDS 198
Query: 196 KLLVSKTSL--SLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGD 253
K+++ ++ + + ++ +++++ G G+ ++ + ++ + + D TG GD
Sbjct: 199 KIILGESDPDKAAKAFSDYAEIIVMKLGPKGAIVYYDGKK-YYSSGYQVP-VEDVTGAGD 256
Query: 254 AFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEA 306
A L + + + + + +G Q++ P+ +I+ +E
Sbjct: 257 ALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLREM 309
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 86.2 bits (214), Expect = 2e-19
Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 51/283 (18%)
Query: 47 GGCAGN-IAYNLKLLNGNPLIVSILGK-----DGSSYLKHLKYLGISNKYIQKINSMFTA 100
GG N I ++ + G G + + Y + N T
Sbjct: 63 GGSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHY-YEQNEQPTG 121
Query: 101 QCFI-VTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAI--------------ISPDNC 145
C +T +N+ I + A + ++ + + +SP++
Sbjct: 122 TCAACIT--GDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESV 179
Query: 146 CNMIKH-----IKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLL-- 198
+ H L L PFI F KE L+K++ + NE E+
Sbjct: 180 LKVAHHASENNRIFTLNLSAPFISQ-------FYKESLMKVMPYVDILFGNETEAATFAR 232
Query: 199 -----------VSKTSLSLQKIN-EQVKVLIVTRGELGSDIFLNNERK-IKIPCVKADRI 245
++K + +L K+N ++ +++I T+G + + +E + I
Sbjct: 233 EQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEI 292
Query: 246 VDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288
+D G GDAF G L ++++ R S I G
Sbjct: 293 IDTNGAGDAFVGGFLSQLVSDKPLTECIRAGHYAASIIIRRTG 335
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB
family, PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 1.90A {Pyrococcus horikoshii} PDB:
3ih0_A* 3gbu_A*
Length = 313
Score = 85.7 bits (213), Expect = 2e-19
Identities = 58/329 (17%), Positives = 114/329 (34%), Gaps = 53/329 (16%)
Query: 1 MNSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKL 59
M+ + G L D L+ + + +K GG N+A +
Sbjct: 1 MSLIASIGELLID------------LISVEEGDLK---DVRLFEKHPGGAPANVAVGVSR 45
Query: 60 LNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH 117
L ++S +G D G ++ L + + I K T F+ + ++
Sbjct: 46 LGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKGASPSFLLYD 105
Query: 118 PGA-MQLSYDDNCINNADIKIAII--------SPDNCCNMIKHIKKILKLKIPFIFDPG- 167
A ++ +D IN ++ A I + + + + K +K FD
Sbjct: 106 DVAYFNMTLND--INWDIVEEAKIVNFGSVILARNPSRETVMKVIKKIKGSSLIAFDVNL 163
Query: 168 -----QSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGE 222
+ + L + IK + + +E E L ++ + + +T G
Sbjct: 164 RLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVEV-----KGSMLTAITLGP 218
Query: 223 LGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIIN--NLDWYTTGRLSSLMG 280
G + N + +P + +D TG GDAF + +L GI+ LD G+ ++L+
Sbjct: 219 KGCRLIKNETV-VDVPSYNVN-PLDTTGAGDAFMAALLVGILKLKGLDLLKLGKFANLVA 276
Query: 281 STEISHQGGQKHC----PSLSEIDQRFKE 305
+ K P E+ + +
Sbjct: 277 ALSTQ-----KRGAWSTPRKDELLKYKEA 300
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 83.8 bits (208), Expect = 1e-18
Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 40/281 (14%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG N A NL L I++ G D G + + G+ + ++ T
Sbjct: 39 GGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFLDRR-TPSYTA 97
Query: 105 VTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKH------------- 151
+ + + N + + I
Sbjct: 98 ILERDGNLVIALADMD----------LYKLFTPRRLKVRAVREAIIASDFLLCDANLPED 147
Query: 152 -IKKILKL----KIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSL 206
+ + + + P +S +L + + +NE E++ L +T+ ++
Sbjct: 148 TLTALGLIARACEKPLAAIA---ISPAKAVKLKAALGDIDILFMNEAEARALTGETAENV 204
Query: 207 QKINEQ-----VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLF 261
+ + +VTRG F E+ I P + + + D TG GDA SG L
Sbjct: 205 RDWPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPPLIRE-VKDVTGAGDAMASGYLA 263
Query: 262 GIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQR 302
I R + + + S ++
Sbjct: 264 AIAEGKTIREALRQGAAAAAITVQSSFATSQDLSKDSVEAM 304
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 83.4 bits (207), Expect = 1e-18
Identities = 57/296 (19%), Positives = 112/296 (37%), Gaps = 35/296 (11%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
+ +K G N + + + +++ +G D G + +++ + GI +I+ N
Sbjct: 24 FVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDN 83
Query: 96 SMFTAQCFIVTDVNNNQITIFH----PGA-MQLSYDD---NCINNADIKIAI--ISP--- 142
FT FI + A +LS +D N + N+ + + I+
Sbjct: 84 ESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNSRL-VHSTGITLAIS 142
Query: 143 DNCCNMIKHIKKILKLKIPFIFDP-------GQSLSMFTKEELIKIIKKS--SYIIVNEY 193
DN + ++ K D KE ++ I+KK +I +
Sbjct: 143 DNAKEAVIKAFELAK-SR--SLDTNIRPKLWSSLEKA--KETILSILKKYDIEVLITDPD 197
Query: 194 ESKLLVSKTSL--SLQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTG 250
++K+L+ T + +K E VKVL+ G G+ + +N + K + DPTG
Sbjct: 198 DTKILLDVTDPDEAYRKYKELGVKVLLYKLGSKGAIAYKDNVK-AFKDAYKVP-VEDPTG 255
Query: 251 CGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEA 306
GDA + + D + + I+ +G + P+L + ++ E
Sbjct: 256 AGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEF 311
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase,
structural genomics, joint center for structural
genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 296
Score = 82.6 bits (205), Expect = 2e-18
Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 28/276 (10%)
Query: 47 GGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI 104
GG N AY++ + +VS +G D G ++ K + N+ + T +
Sbjct: 24 GGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIMEVFKEKQLKNQIER--VDYPTGTVQV 81
Query: 105 VTDVN-NNQITIF-HPGAMQLSYDD---NCINNADI----KIAIISPDNCCNMIKHIKKI 155
D I + + D N +A + + + + + +
Sbjct: 82 TLDDEGVPCYEIKEGVAWDNIPFTDELKRLALNTRAVCFGSLAQRNEVSRATINRFLDTM 141
Query: 156 LKLKIPFI-FDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINE--- 211
+ FD +TKE L + K+ + + +N+ E + + +
Sbjct: 142 PDIDGQLKIFDINLRQDFYTKEVLRESFKRCNILKINDEELVTISRMFGYPGIDLQDKCW 201
Query: 212 ------QVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIIN 265
+K+LI+T G GS +F K + D G GD+F + I+N
Sbjct: 202 ILLAKYNLKMLILTCGINGSYVFTPGVV-SFQETPKVP-VADTVGAGDSFTAAFCASILN 259
Query: 266 NLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301
+L+ + + + G P L I +
Sbjct: 260 GKSVPEAHKLAVEVSAYVCTQSGAM---PELPVILK 292
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 82.6 bits (205), Expect = 2e-18
Identities = 50/288 (17%), Positives = 111/288 (38%), Gaps = 26/288 (9%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
++ GG N+A L L V +G+D G+ + L+ G+ + ++
Sbjct: 24 GKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAP 83
Query: 96 SMFTAQCFIVTDVNNNQITIFH--PGA-MQLSYDDNCINNADIK---------IAIISPD 143
FT ++ A L+ + ++ I
Sbjct: 84 G-FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGA--FDPDYLEGVRFLHLSGITPALSP 140
Query: 144 NCCNMIKH-IKKILKLKIPFIFDPGQSLSMFTKEE----LIKIIKKSSYIIVNEYESKLL 198
+++ + + D ++++ EE L + + + ++E E++LL
Sbjct: 141 EARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELL 200
Query: 199 VSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSG 258
+ +L+ ++ +++ RG G+ F++ R ++ + VDP G GDAF +G
Sbjct: 201 FGRVEEALRALS--APEVVLKRGAKGAWAFVDGRR-VEGSAFAVE-AVDPVGAGDAFAAG 256
Query: 259 VLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKEA 306
L G + L RL++L+G++ + +G + P +++ K
Sbjct: 257 YLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKAT 304
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 80.7 bits (200), Expect = 1e-17
Identities = 50/330 (15%), Positives = 109/330 (33%), Gaps = 49/330 (14%)
Query: 1 MNSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKL 59
MN + G + D L+P++ + K GG + N+ +
Sbjct: 24 MNKVWVIGDASVD------------LVPEK---------QNSYLKCPGGASANVGVCVAR 62
Query: 60 LNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH 117
L G + LG D G + + G+ +++ + +A + + + +
Sbjct: 63 LGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYL 122
Query: 118 --PGA-MQLSYDD-NCINNADIK----IAIISPDNCCNMIKHIKKILKLKIPFIFDPG-- 167
PGA +S D + I + ++ +++ + +FD
Sbjct: 123 VHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLR 182
Query: 168 ----QSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS--LQKINEQ-VKVLIVTR 220
+ E + + +S V+ E L + + + I++
Sbjct: 183 SKMWGNTDEI-PELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDTTIISL 241
Query: 221 GELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI-----INNLDWYTTGRL 275
G G+ + P + D +VD TG GDAF G+LF + ++
Sbjct: 242 GADGALLITAEGE-FHFPAPRVD-VVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISN 299
Query: 276 SSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
++ G+ ++ +G P +++
Sbjct: 300 ANACGAMAVTAKGAMTALPFPDQLNTFLSS 329
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 79.6 bits (197), Expect = 4e-17
Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 35/291 (12%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
++ K G N+A L L S LG D G L + GI ++
Sbjct: 49 HAEAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRYLLAAMAAEGIDCSHVVCDA 108
Query: 96 SMFTAQCFIVTDVNNNQITIFH----PGA-MQLSYDDNCINNADIK----------IAII 140
+ T F V + A + D I+ A + I
Sbjct: 109 TQKTGFQF-KGKVTDGSDPPVEYHRKGSAASHMGVAD--IDEAWLLSARHLHATGVFPAI 165
Query: 141 SPDNCCNMIKH-IKKILKLKIPFIFDP-------GQSLSMFTKEELIKIIKKSSYIIVNE 192
S + + + FDP M ++ + + ++ +++
Sbjct: 166 SA-TTLPAARKTMDLMRAAGRSVSFDPNLRPTLWATPELM--RDAINDLATRADWVLPGM 222
Query: 193 YESKLLVSKTSL--SLQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPT 249
E + L +T+ + + K+++V G G+ ++ +VD
Sbjct: 223 EEGRFLTGETTPEGVARFYRQLGAKLVVVKLGAEGAYFDGEAGS-GRVAGFPVAEVVDTV 281
Query: 250 GCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEID 300
G GD F GV+ +++ L + + +G+ + G + P+ +E++
Sbjct: 282 GAGDGFAVGVISALLDGLGVPEAVKRGAWIGARAVQVLGDSEGLPTRAELN 332
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 79.2 bits (196), Expect = 5e-17
Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 36/298 (12%)
Query: 39 SPTMKKEYGGCAGNIAYNLKLLNGNPLI----VSILGKD--GSSYLKHLKYLGISNKYIQ 92
+K+ +GG N + + + V+ LG D L + Q
Sbjct: 21 GADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHGENVDTSLTQ 80
Query: 93 KINSMFTAQCFIVTDVNNNQITIFH--PGA-MQLSYDD------NCINNAD------IKI 137
++ + +I TD + + A + + N D I +
Sbjct: 81 RMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISL 140
Query: 138 AIISPDNCCNMIKHIKKILKLKIPFIFDP------GQSLSMFTKEELIKIIKKSSYIIVN 191
AI+SP + ++ +++ IFD S T++ ++++ + +
Sbjct: 141 AILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEE-TQQVYQQMLECTDIAFLT 199
Query: 192 EYESKLLVSKTSLS--LQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVKA--DRIV 246
+ L + + + + + VK ++V RG + + E + +P VK ++++
Sbjct: 200 LDDEDALWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVI 259
Query: 247 DPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHC---PSLSEIDQ 301
D T GD+F +G L + + L ST I ++G P+
Sbjct: 260 DTTAAGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYRGAIIPREAMPAEGHHHH 317
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Length = 304
Score = 72.1 bits (178), Expect = 1e-14
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 40/210 (19%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSY 125
+G D L+ K I YI K T Q FI V N I + + GA M ++
Sbjct: 63 IGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYV-YGGANMTMTP 121
Query: 126 DD-----NCINNADIKIAI--ISPDNCCNMIKHIKKILK-LKIPFIFD--PGQSLSMFTK 175
+D + I NAD +A + I +I K + + + P ++L
Sbjct: 122 EDVINAKDAIINADFVVAQLEVPIP----AIISAFEIAKAHGVTTVLNPAPAKALP---- 173
Query: 176 EELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGELGSDI 227
EL+ +I I+ NE E++LL + Q + + +K +++T G+ G+
Sbjct: 174 NELLSLI---DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLITLGKQGT-Y 229
Query: 228 FLNNERKIKIPC--VKADRIVDPTGCGDAF 255
F + I V A +D T GD F
Sbjct: 230 FATKNQSQHIEAYKVNA---IDTTAAGDTF 256
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 71.9 bits (177), Expect = 2e-14
Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 42/259 (16%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSY 125
+G D G+ L+ L GI + +A I + + I P +L
Sbjct: 89 VGDDETGTRILRDLSESGIDTSGMTVAPGARSALSTIIIDNRGERLIV---PFYDHRLHE 145
Query: 126 DD-----NCINNADIKIA---IISPDNCCNMIKHIKKILKLKIPFIFDPG---QSLSMFT 174
I D + P+ +++ + L P I D
Sbjct: 146 KKRACTPEDIALFDAVLVDVRW--PELALDVLTVARA---LGKPAILDGDVAPVETL--- 197
Query: 175 KEELIKIIKKSSYIIVNEYESKLL--VSKTSLSLQKINEQ--VKVLIVTRGELGSDIFLN 230
E L ++I+ +E + L + L ++ + + VT G G
Sbjct: 198 -EGLAPAA---THIVFSEPAATRLTGLETVKDMLPVLHARYPQTFIAVTAGPAGCWWTEA 253
Query: 231 NERKIKI---PCVKADRIVDPTGCGDAFRSGVL-FGIINNLDWYTTGRLSSLMGSTEISH 286
++ + V+A VD GD F G + + RLSS+ + + +
Sbjct: 254 DDPTVHFQTTMQVEA---VDTLAAGDIF-HGTFALAMAEGMQSRAAVRLSSVAAALKCTV 309
Query: 287 QGGQKHCPSLSEIDQRFKE 305
GG+ P+ E ++ ++
Sbjct: 310 FGGRIGAPTREETEEAMRQ 328
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding,
transferase; HET: RIB ADP; 1.84A {Escherichia coli}
SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Length = 309
Score = 69.4 bits (171), Expect = 9e-14
Identities = 52/260 (20%), Positives = 85/260 (32%), Gaps = 40/260 (15%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSY 125
G D G S + L I + I T I V N I I H GA LS
Sbjct: 64 TGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGI-HAGANAALSP 122
Query: 126 DD-----NCINNADIKIAI--ISPDNCCNMIKHIKKILK-LKIPFIFD--PGQSLSMFTK 175
I NA + + + KI K + P + L
Sbjct: 123 ALVEAQRERIANASALLMQLESPLE----SVMAAAKIAHQNKTIVALNPAPARELP---- 174
Query: 176 EELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGELGSDI 227
+EL+ ++ I NE E++ L + + + ++ +++T G G
Sbjct: 175 DELLALV---DIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGV-W 230
Query: 228 FLNNERKIKIPC--VKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEIS 285
N ++P V+A VD GD F ++ ++ R + + ++
Sbjct: 231 ASVNGEGQRVPGFRVQA---VDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVT 287
Query: 286 HQGGQKHCPSLSEIDQRFKE 305
+G Q P EID
Sbjct: 288 RKGAQPSVPWREEIDAFLDR 307
>2fv7_A Ribokinase; structural genomics, structural genomics consort
transferase; HET: ADP; 2.10A {Homo sapiens} SCOP:
c.72.1.1
Length = 331
Score = 69.1 bits (170), Expect = 1e-13
Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 41/212 (19%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSY 125
+GKD G+ Y+++LK IS ++ + T I V + N I I GA + L+
Sbjct: 84 VGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVI-VAGANLLLNT 142
Query: 126 DD-----NCINNADIKIAI--ISPDNCCNMIKHIKKILK-LKIPFIFDP---GQSLSMFT 174
+D N I+ A + + I+P + + + +F+P L
Sbjct: 143 EDLRAAANVISRAKVMVCQLEITPA----TSLEALTMARRSGVKTLFNPAPAIADLD--- 195
Query: 175 KEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGELGSD 226
+ + NE E+++L T S E +V+I+T G G
Sbjct: 196 -PQFYTLS---DVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCV 251
Query: 227 IFLNNERKIKI---PCVKADRIVDPTGCGDAF 255
+ E + K VKA VD TG GD+F
Sbjct: 252 VLSQTEPEPKHIPTEKVKA---VDTTGAGDSF 280
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 69.2 bits (170), Expect = 2e-13
Identities = 55/319 (17%), Positives = 107/319 (33%), Gaps = 43/319 (13%)
Query: 25 LLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLK 82
+L L K + GG N+A + L G V +LG D G
Sbjct: 17 MLAQPLVKKG---MPRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDFLFDSFA 73
Query: 83 YLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFH--PGA-MQLSYDD---NCINNADI- 135
G+ I + ++ TA F+ D + + F+ P A + + ++A I
Sbjct: 74 EAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIF 133
Query: 136 ---KIAIISPDNCCNMIKHIKKILKLKIPFIFDP------GQSLSMFTKEELIKIIKKSS 186
++ D + +++ FD + L K + +
Sbjct: 134 HACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPMLWPNGENP-ASRLWKGLSLAD 192
Query: 187 YIIVNEYESKLLVSKTSLSLQKINEQ-----VKVLIVTRGELGSDIFLNNERKIKIPCVK 241
+ ++ E L + + + +Q ++L+VT + ++P +
Sbjct: 193 VVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAG-GEVPTFR 251
Query: 242 ADRIVDPTGCGDAFRSGVLFGIINNLD--------------WYTTGRLSSLMGSTEISHQ 287
+ D GDAF G+L+ D +T R ++ +G+ ++ Q
Sbjct: 252 VQ-VQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQ 310
Query: 288 GGQKHCPSLSEIDQRFKEA 306
G P LSE+ +E
Sbjct: 311 GAFTAMPMLSEVLSLIQEQ 329
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose
metabolic process,ATP ribokinase, PFKB
family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A
{Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Length = 299
Score = 66.0 bits (162), Expect = 1e-12
Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 37/199 (18%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVN-NNQITIFHPGA-MQLSY 125
G D G+ + +K + N + I+ + +N I A S
Sbjct: 62 TGNDSNGAWIRQQIKNEPLMLLPDGHFNQH-SDTSIILNSADGDNAIIT-TTAAADTFSL 119
Query: 126 DD-----NCINNADIKIAI--ISPDNCCNMIKHIKKILKLKIPFIFD--PGQSLSMFTKE 176
D+ DI + S D + ++ + + +F+ P
Sbjct: 120 DEMIPHMADAVAGDILLQQGNFSLDKTRALFQYARS---RGMTTVFNPSPVNPDF----C 172
Query: 177 ELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIK 236
L +I +VNE E++LL VK L++T+G G+ + ++
Sbjct: 173 HLWPLI---DIAVVNESEAELLQPYG----------VKTLVITQGAAGA-WLVQEGQRQF 218
Query: 237 IPCVKADRIVDPTGCGDAF 255
P V A+ +D TG GD F
Sbjct: 219 CPAVPAE-ALDTTGAGDTF 236
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc
initiative, PSI, joint center for structural genomics,
TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Length = 311
Score = 64.1 bits (157), Expect = 6e-12
Identities = 56/261 (21%), Positives = 95/261 (36%), Gaps = 50/261 (19%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFI-VTDVNNNQITIFHPGA-MQLSY 125
+G D +++ + LGI YI+ S+ T + FI V N+I I PGA +L
Sbjct: 75 IGNDDYSDLLIENYEKLGI-TGYIRV--SLPTGRAFIEVDKTGQNRIII-FPGANAELKK 130
Query: 126 DD---NCINNADIKI--------AIISPDNCCNMIKHIKKILKLKIPFIFDPG--QSLSM 172
+ N ++ +DI + + K + IFDP Q ++
Sbjct: 131 ELIDWNTLSESDILLLQNEIPFETTL----------ECAK--RFNGIVIFDPAPAQGIN- 177
Query: 173 FTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGELG 224
EE+ + + Y+ NE E + L + + VK +IV G+ G
Sbjct: 178 ---EEIFQYL---DYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKG 231
Query: 225 SDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEI 284
+ +N K P K VD T GD F + + + + +
Sbjct: 232 V-LLVNKNEKKHFPTFKVK-AVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISV 289
Query: 285 SHQGGQKHCPSLSEIDQRFKE 305
+ G Q P+ E++ K
Sbjct: 290 TRLGAQSSIPAREEVEAFLKN 310
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase,
transferase; HET: RIB ADP; 1.98A {Mycobacterium
tuberculosis} PDB: 3go7_A*
Length = 310
Score = 64.1 bits (157), Expect = 6e-12
Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 42/252 (16%)
Query: 70 LGKD--GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVN-NNQITIFHPGA-MQLSY 125
G D + HL+ + + + IV D + N + + PGA L+
Sbjct: 79 FGDDPAAAQLRAHLRANAVGLDRTVTVPGP-SGTAIIVVDASAENTVLV-APGANAHLTP 136
Query: 126 DDNCINNADIKIAI--ISPDNCCNMIKHIKKILKLKIPFIFDP-----GQSLSMFTKEEL 178
+ + N D+ + I + + + + +S ++L
Sbjct: 137 VPSAVANCDVLLTQLEIPVATALAAARAAQS---ADAVVMVNASPAGQDRSSL----QDL 189
Query: 179 IKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIP 238
I +I NE+E+ S ++T G G+ ++ + ++P
Sbjct: 190 AAIA---DVVIANEHEANDWPS-----------PPTHFVITLGVRGA-RYVGADGVFEVP 234
Query: 239 CVKADRIVDPTGCGDAFRSGVL-----FGIINNLDWYTTGRLSSLMGSTEISHQGGQKHC 293
VD G GD F +GVL + + R + G+ G
Sbjct: 235 APTVT-PVDTAGAGDVF-AGVLAANWPRNPGSPAERLRALRRACAAGALATLVSGVGDCA 292
Query: 294 PSLSEIDQRFKE 305
P+ + ID +
Sbjct: 293 PAAAAIDAALRA 304
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 63.4 bits (155), Expect = 1e-11
Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 27/273 (9%)
Query: 41 TMKKEYGGCAGNIAYNLKLLNGNPLI--VSILGKD--GSSYLKHLKYLGISNKYIQKINS 96
T + + G N A+ L L I S +G D + GI ++ I
Sbjct: 44 TYRLGFAGDTFNTAWYLARLRPESRISYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPG 103
Query: 97 MFTAQCFIVTDVNNNQITIFHPG--AMQLS----YDDNCINNAD------IKIAIISPDN 144
I + + A +L+ + AD I +AI+
Sbjct: 104 RTVGLYLITLEQGERSFAYWRGQSAARELAGDADALAAAMARADVVYFSGITLAILDQCG 163
Query: 145 CCNMIKHIKKILKLKIPFIFDPG------QSLSMFTKEELIKIIKKSSYIIVNEYESKLL 198
+++ + + FDP E +++ S + + +
Sbjct: 164 RATLLRALAQARATGRTIAFDPNLRPRLWAGTGE-MTETIMQGAAVSDIALPSFEDEAAW 222
Query: 199 VSKTSLS--LQKINEQ-VKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAF 255
+ V+ ++V G + R ++P ++VD T GD+F
Sbjct: 223 FGDAGPDATADRYARAGVRSVVVKNGPHAVHFLQDGRR-GRVPVPPVAQVVDTTAAGDSF 281
Query: 256 RSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288
+G+L ++ T ++ + + +G
Sbjct: 282 NAGLLDSVLAGQPLETAIAAAAALAGQVVQGKG 314
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II,
NYSGXRC,, structural genomics; 2.26A {Enterococcus
faecalis}
Length = 346
Score = 61.2 bits (149), Expect = 8e-11
Identities = 38/309 (12%), Positives = 95/309 (30%), Gaps = 51/309 (16%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
+ ++ + G N+ NL +++ L + G + L+ LGIS++++ +
Sbjct: 25 QTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAGKAALRKLGISDQWVGEKG 84
Query: 96 SMFTAQCFIVTDVNN--NQITIFHPG---AMQLSYDD----NCINNAD------IKIAII 140
+ F Q+T + D + D I +++
Sbjct: 85 DHIGSF-FAEMGYGIRPTQVTYQNRHQSAFGISEAKDYDFEAFLAEVDMVHICGISLSL- 142
Query: 141 SPDNCCNMIKHIKKILKLKIPFIFDP---------GQSLSMFTKEELIKIIKKSSYIIVN 191
+ + +K + FD +L M +++ +I+ + +
Sbjct: 143 TEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALFM--RQQYERILPYCDIVFGS 200
Query: 192 EYESKLL--------VSKTSLSLQKINE-----QVKVLIVTRGELGSD------IFLNNE 232
+ L + + + I ++ T +
Sbjct: 201 RRDLVELLGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYLYTQN 260
Query: 233 RKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKH 292
+ +D G GDA+ +G+L+G N +++ G + QG
Sbjct: 261 EYQQSEKRPLL-NLDRIGAGDAYAAGILYGYSQNWSLEKAVTFATVNGVLAHTIQGDIPL 319
Query: 293 CPSLSEIDQ 301
++ +++
Sbjct: 320 -TTVKQVNH 327
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 57.7 bits (140), Expect = 1e-09
Identities = 46/298 (15%), Positives = 99/298 (33%), Gaps = 52/298 (17%)
Query: 38 YSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKIN 95
+ + YGG N+A L + + V+ L + G + HL+ G+ YI +
Sbjct: 35 QTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGG 94
Query: 96 SMFTAQCFIVTDVNNNQITIF----HPGAMQLSYDD----NCINNADIKIAI----ISP- 142
+ F+ + + H + +D ++ A I+P
Sbjct: 95 NRIGIY-FLEIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARW---FHFSGITPP 150
Query: 143 --DNCCNMIKH-IKKILKLKIPFIFDPGQSLSMFTKEE----LIKIIKKSSYIIVNEYES 195
+++ +K + + D ++TKEE +I ++ +I NE +
Sbjct: 151 LGKELPLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVMIPFMEYVDVLIANEEDI 210
Query: 196 KLL---------VSKTSLSLQKINE---------QVKVLIVTRGELGSD-------IFLN 230
+ + + L+ + + K + +T E S +
Sbjct: 211 EKVLGISVEGLDLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFE 270
Query: 231 NERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQG 288
N + + IVD G GD+F +++G + D ++ + + G
Sbjct: 271 NGQPHFSNRYEIH-IVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPG 327
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 49.9 bits (120), Expect = 3e-07
Identities = 54/321 (16%), Positives = 115/321 (35%), Gaps = 54/321 (16%)
Query: 10 AFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSI 69
A D ++ G+ + K N + + GG +++ L + I
Sbjct: 12 AIDRLLFIRGEL-------EKRKTN---RVIKTEFDCGGKGLHVSGVLSKFGIKNEALGI 61
Query: 70 LGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIF-HPGAMQLSYDD 127
G D LK I++ ++ T +CF+V + N T+ G +S +
Sbjct: 62 AGSDNLDKLYAILKEKHINHDFL-VEAGTSTRECFVVLSDDTNGSTMIPEAGF-TVSQTN 119
Query: 128 ---------NCINNADIKIAI-------ISPDNCCNMIKHIKKILKLKIPFIFDPGQSLS 171
+ D+ + I + + +++ +K D
Sbjct: 120 KDNLLKQIAKKVKKEDM-VVIAGSPPPHYTLSDFKELLRTVKA---TGAFLGCD------ 169
Query: 172 MFTKEELIKIIKKSSYII-VNEYESKLLVSKTSLSL----QKINEQVKVLIVTRGELGSD 226
+ E L ++ I NE E ++ + + SL + + E++ L+V+ G GS
Sbjct: 170 -NSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIPYLVVSLGAKGS- 227
Query: 227 IFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEI 284
I +N + ++ P V+ + TG GD F + G+ N+ T ++++ ++++
Sbjct: 228 ICAHNGKLYQVIPPKVQE---RNDTGAGDVFVGAFIAGLAMNMPITETLKVATGCSASKV 284
Query: 285 SHQGGQKHCPSLSEIDQRFKE 305
Q L + +
Sbjct: 285 MQQD--SSSFDLEAAGKLKNQ 303
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 5e-06
Identities = 42/292 (14%), Positives = 84/292 (28%), Gaps = 99/292 (33%)
Query: 30 LDKINVSFYSPTMKKEYGGCAGNIAYNLK--LLNGNPLIVSILG---KDGSSYLKHLKYL 84
LD +++ +K +L +L NP +SI+ +DG + + K++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 85 GISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDN 144
+ I + + P + +D +++ P +
Sbjct: 351 NCDK--LTTIIESS--------------LNVLEPAEYRKMFDR---------LSVF-PPS 384
Query: 145 CCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSK--- 201
IP LS+ + +IK ++VN+ LV K
Sbjct: 385 -------------AHIPT-----ILLSLIWFD----VIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 202 -TSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260
+++S+ I ++KV + L R I + + D +
Sbjct: 423 ESTISIPSIYLELKVKLENEYAL--------HRSI-VDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 261 FGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ-----RFKEAF 307
+ + I H H L I+ F+ F
Sbjct: 474 Y-------SH-------------IGH-----H---LKNIEHPERMTLFRMVF 497
Score = 39.8 bits (92), Expect = 0.001
Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 48/236 (20%)
Query: 28 DQLDKINVSFYSPTMKKEYGGCAGN----IAYNLKLLNGNPLI----VSILGKDGSSYLK 79
+++ +IN F +K E + I +L N N + VS L YLK
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP----YLK 139
Query: 80 ---HLKYLGISNKYIQKINSMFTA--QCFIVTDVNNNQITIFHPGA---MQLSYDDNCIN 131
L L K + I+ + + + + ++ + L +
Sbjct: 140 LRQALLEL-RPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---- 193
Query: 132 NADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVN 191
SP+ M++ + + ++ + S ++ + I+ + +
Sbjct: 194 ---------SPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSK 241
Query: 192 EYESKLLV------SKTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVK 241
YE+ LLV +K N K+L+ TR + +D FL+ I
Sbjct: 242 PYENCLLVLLNVQNAKA---WNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDH 293
Score = 33.7 bits (76), Expect = 0.084
Identities = 42/255 (16%), Positives = 66/255 (25%), Gaps = 97/255 (38%)
Query: 116 FHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTK 175
F G Q Y D D A + +C K ++ + K S+ +K
Sbjct: 9 FETGEHQYQYKDILSVFED---AFVDNFDC----KDVQDMPK-------------SILSK 48
Query: 176 EELIKIIKKSS-----YIIVNEYESK------------------LLVSK-------TSLS 205
EE+ II + SK L+S S+
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 206 LQKINEQVKVLI----------VTRGELGSDIFLNNERKIKIPCVKADR-----IVD-PT 249
+ EQ L V+R + + R+ + R ++D
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-----RQ----ALLELRPAKNVLIDGVL 159
Query: 250 GCG------DAFRSGVL-----FGIINNLDWYTTGRLSS----LMGSTEISHQGGQKHCP 294
G G D S + F I W +S L ++ +Q
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 295 ---SLSEIDQRFKEA 306
S I R
Sbjct: 216 RSDHSSNIKLRIHSI 230
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 41.4 bits (98), Expect = 2e-04
Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 50/284 (17%)
Query: 52 NIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N+A + L G+ + G G + L + + + T Q V +
Sbjct: 43 NVARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATV-EAKDW-TRQNLHVHVEAS 100
Query: 111 NQITIF-HPGAMQLSYDD--------NCINNADIKIAI-------ISPDNCCNMIKHIKK 154
+ F PGA L+ D+ I + I + I + + +I +K
Sbjct: 101 GEQYRFVMPGA-ALNEDEFRQLEEQVLEIESGAI-LVISGSLPPGVKLEKLTQLISAAQK 158
Query: 155 ILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIV--NEYESKLLVSKTSLSL------ 206
I I D + E L + + +V N+ E LV++
Sbjct: 159 ---QGIRCIVD-------SSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKA 208
Query: 207 -QKINEQ--VKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLF 261
Q+I K ++V+ G G+ + +++E ++ P VK+ G GD+ +
Sbjct: 209 AQEIVNSGKAKRVVVSLGPQGA-LGVDSENCIQVVPPPVKS---QSTVGAGDSMVGAMTL 264
Query: 262 GIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
+ N R GS +QG + S + + +
Sbjct: 265 KLAENASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAY 306
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 38.7 bits (91), Expect = 0.001
Identities = 43/257 (16%), Positives = 91/257 (35%), Gaps = 47/257 (18%)
Query: 52 NIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N++ LK L+ + G G + L I + +I +++ T +
Sbjct: 41 NVSRVLKTLDVESTALGFAGGFPGKFIIDTLNNSAIQSNFI-EVDED-TRINVKLKT--G 96
Query: 111 NQITIFHPGAMQLSYDD--------NCINNADIKIAI-------ISPDNCCNMIKHIKKI 155
+ I PG ++ + DI + + I D + + +
Sbjct: 97 QETEINAPGP-HITSTQFEQLLQQIKNTTSEDI-VIVAGSVPSSIPSDAYAQIAQITAQ- 153
Query: 156 LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYII-VNEYESKLLVSKTSLSL-------Q 207
+ D KE ++ I N+ E +++ + T S +
Sbjct: 154 --TGAKLVVD-------AEKELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGR 204
Query: 208 KINEQ-VKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLFGII 264
+ ++ + +IV+ G G+ I+++ E K P K V+ G GD+ +G++ GI
Sbjct: 205 LLVDKGAQSVIVSLGGDGA-IYIDKEISIKAVNPQGKV---VNTVGSGDSTVAGMVAGIA 260
Query: 265 NNLDWYTTGRLSSLMGS 281
+ L + + G+
Sbjct: 261 SGLSIEKAFQQAVACGT 277
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 38.7 bits (91), Expect = 0.001
Identities = 38/257 (14%), Positives = 84/257 (32%), Gaps = 47/257 (18%)
Query: 52 NIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N++ LK L + LG G+ L+ I +I ++ T +
Sbjct: 41 NVSRVLKRLGHETKALGFLGGFTGAYVRNALEKEEIGLSFI-EVEGD-TRINVKIKG--K 96
Query: 111 NQITIFHPGAMQLSYDD--------NCINNADIKIAI-------ISPDNCCNMIKHIKKI 155
+ + + + + D+ + + + +M + K+
Sbjct: 97 QETELNGTAP-LIKKEHVQALLEQLTELEKGDV-LVLAGSVPQAMPQTIYRSMTQIAKE- 153
Query: 156 LKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYII-VNEYESKLLVSKTSLSL-------Q 207
D + E L +++ I N +E LVSK S+ Q
Sbjct: 154 --RGAFVAVD-------TSGEALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQ 204
Query: 208 KINEQ-VKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLFGII 264
++ + ++ ++V+ G+ +F + E + +P + + G GD+ +G L +
Sbjct: 205 RLIGEGIESILVSFAGDGA-LFASAEGMFHVNVPSGEV---RNSVGAGDSVVAGFLAALQ 260
Query: 265 NNLDWYTTGRLSSLMGS 281
+ GS
Sbjct: 261 EGKSLEDAVPFAVAAGS 277
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 36.8 bits (86), Expect = 0.006
Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 52/285 (18%)
Query: 52 NIAYNLKLLNGNPLIVSILGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNN 110
N+ L + L +G + G K L + I + + I T C +
Sbjct: 61 NVTRVLAQVGEPVLASGFIGGELGQFIAKKLDHADIKHAFY-NIKGE-TRNCIAILH-EG 117
Query: 111 NQITIFHPGAMQLSYDD---------NCINNADIKIAI-------ISPDNCCNMIKHIKK 154
Q I G ++ + + + +AI ++ D +I+ +
Sbjct: 118 QQTEILEQGP-EIDNQEAAGFIKHFEQMMEKVEA-VAISGSLPKGLNQDYYAQIIERCQN 175
Query: 155 ILKLKIPFIFDPGQSLSMFTKEELIKIIKKSS--YII-VNEYESKLLVSKTSLS------ 205
+P I D + L +++ +I N E L+++
Sbjct: 176 ---KGVPVILD-------CSGATLQTVLENPYKPTVIKPNISELYQLLNQPLDESLESLK 225
Query: 206 --LQKINEQ-VKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVL 260
+ + + ++ +IV+ G G+ +N ++ IP + ++P G GD+ +G+
Sbjct: 226 QAVSQPLFEGIEWIIVSLGAQGA-FAKHNHTFYRVNIPTISV---LNPVGSGDSTVAGIT 281
Query: 261 FGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
I+N+ + + + ++ +G +L+ D F +
Sbjct: 282 SAILNHENDHDLLKKANTLGMLNAQEAQ--TGYVNLNNYDDLFNQ 324
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 36.8 bits (86), Expect = 0.007
Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 206 LQKINEQ-VKVLIVTRGELGSDIFLNNER--KIKIPCVKADRIVDPTGCGDAFRSGVLFG 262
L K ++ ++++ G+ G+ I ++++ ++KIP ++A +P G GDA +G+ +G
Sbjct: 211 LTKPMFAGIEWIVISLGKDGA-IAKHHDQFYRVKIPTIQA---KNPVGSGDATIAGLAYG 266
Query: 263 IINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
+ + + G + + + +
Sbjct: 267 LAKDAPAAELLKWGMAAGMANAQERM--TGHVDVENVKKHLMN 307
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 35.3 bits (82), Expect = 0.018
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 207 QKINEQVKVLIVTRGELGSDIFLNNE---RKIKIPCVKADRIVDPTGCGDAFRSGVLFGI 263
+K+ E+ +V +V+ I E + G GDA+ +G+++
Sbjct: 228 EKLAEKSQVSVVSYEVKND-IVATREGVWLIRSKEEIDT---SHLLGAGDAYVAGMVYYF 283
Query: 264 I-NNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
I + ++ + + K+ P L I + +
Sbjct: 284 IKHGANFLEMAKFGFASALAATRRKE--KYMPDLEAIKKEYDH 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.054
Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 106/221 (47%)
Query: 4 LIC--GSLAFDN---IMRFEGKFSNSLLP-DQLDKINVSFYSPTMKKEYGGCAGNIAYNL 57
L ++ ++ ++ + G +P D+L + N YG A N
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN-----------YGMIAINPG--- 1815
Query: 58 KLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNN----QI 113
+ + ++ Y+ ++++ IV N N Q
Sbjct: 1816 -------RVAASFSQEALQYV------------VERVGKRTGWLVEIV---NYNVENQQY 1853
Query: 114 TIFHPGAMQLSYDDNCINNA-DIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSM 172
A D++ A+ D N++ IK + K
Sbjct: 1854 VA-----------------AGDLR-AL---DTVTNVLNFIK-LQK--------------- 1876
Query: 173 FTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQV 213
I II+ L S LSL+++ +
Sbjct: 1877 ------IDIIE-------------LQKS---LSLEEVEGHL 1895
Score = 31.2 bits (70), Expect = 0.51
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 32/86 (37%)
Query: 165 DPGQSLSMFTKEELIKII----KKSSYI--IVNEYESKLLVSKTSLSLQKINEQVKVLIV 218
+PG+ + F++E L ++ K++ ++ IVN Y + N+Q V
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-YNVE-------------NQQ----YV 1854
Query: 219 TRGELG-----SDIFLN--NERKIKI 237
G+L +++ LN +KI I
Sbjct: 1855 AAGDLRALDTVTNV-LNFIKLQKIDI 1879
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1,
structural genomics, joint center for structural
genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Length = 273
Score = 30.0 bits (67), Expect = 0.85
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 135 IKIAIISPDNCCNMIKHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIK-KSSYIIVNE 192
+ + +S + +++ ++ + D G S E K++ + + + N
Sbjct: 64 LNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTVVKGNL 123
Query: 193 YESKLLVSKTSLS 205
E + S
Sbjct: 124 SEMRTFCQLVSHG 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 29.8 bits (67), Expect = 1.0
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 60 LNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVT--DVNNNQITIFH 117
L+ N + + + + L +L L +S+ ++ I+S + D+++N +
Sbjct: 46 LSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104
Query: 118 PGA 120
Sbjct: 105 EFL 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 29.1 bits (65), Expect = 2.2
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 56 NLKLLN--GNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVT-DVNNNQ 112
L ++ N L + ++ L+ L ISN + +N + D+++N
Sbjct: 255 GLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312
Query: 113 ITIFHPGAMQLS 124
+ Q
Sbjct: 313 LLHVERNQPQFD 324
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.4
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 147 NMIKHIKKILKLKIPFIFDPGQSLSM 172
+K ++ LKL D +L++
Sbjct: 20 QALKKLQASLKLYAD---DSAPALAI 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 56 NLKLLN--GNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVT-DVNNNQ 112
L ++ N L + ++ L+ L ISN + +N + D+++N
Sbjct: 249 GLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 113 ITIFHPGAMQLS 124
+ Q
Sbjct: 307 LLHVERNQPQFD 318
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 28.6 bits (64), Expect = 3.5
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 56 NLKLLN--GNPLIVSILGKDGSSYLKHLKYLGISNKYIQKI--NSMFTAQCFIVT-DVNN 110
+L L L ++L LK L L +S I+ + + F + + D ++
Sbjct: 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157
Query: 111 NQITIFHPGAMQ 122
NQI + ++
Sbjct: 158 NQIFLVCEHELE 169
Score = 28.2 bits (63), Expect = 4.2
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 55 YNLKLLN--GNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINS-MFTAQCFIVT-DVNN 110
+LK+LN N + + + + L +L+ L +S + ++ S F + D+
Sbjct: 290 KDLKVLNLAYNKI--NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 111 NQITIFHPGAMQ-------LSYDDNCINNADIKIAIISPDNCCNMIKHIKKI 155
N I I + L DN + +I N + + KI
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 28.5 bits (64), Expect = 3.6
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 56 NLKLLN--GNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVT-DVNNNQ 112
+L+ L+ N L LKYL +S + ++S F + D ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 113 ITIFHPG 119
+
Sbjct: 408 LKQMSEF 414
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 27.9 bits (62), Expect = 4.6
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 57 LKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKI-NSMFT--AQCFIVTDVNNNQI 113
+++ N L + + L +L+YL ISN I+ + + Q ++ +N I
Sbjct: 84 IRIEKANNL--LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141
Query: 114 TIFHPGA 120
+
Sbjct: 142 HTIERNS 148
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A*
3und_A*
Length = 285
Score = 27.5 bits (62), Expect = 5.3
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 118 PGAMQLSYDDNCINNADIKIAII-------SPDNCCNMIKHIKKI-LKLKIPFIF 164
PG+M ++ + + S D ++ + KL IPF+F
Sbjct: 2 PGSMNVAISPGVTAGNSLPFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVF 56
>3o74_A Fructose transport system repressor FRUR; dual transcriptional
regulator, DNA, transcription; 2.00A {Pseudomonas
putida} PDB: 3o75_A*
Length = 272
Score = 27.5 bits (62), Expect = 5.7
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 209 INEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGC 251
+ L V D + +P + DR +DP
Sbjct: 55 RARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPAHF 97
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 27.5 bits (61), Expect = 6.0
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 130 INNADIKIAIISPDNCCNMIKHI------KKILKLKIPFIFDPGQS---------LSMFT 174
+ + + D + IK + K L+ + + D G + L +
Sbjct: 501 LRREGHDVDGLGLDELRDAIKLLEVGKISKDALRDIVACMADEGLAAEDAARKLNLLLLA 560
Query: 175 KEELIKIIKK 184
++E+ II++
Sbjct: 561 EDEIESIIQE 570
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli
structural genomics, PSI-2, protein structure
initiative; 1.85A {Escherichia coli}
Length = 293
Score = 27.1 bits (61), Expect = 6.4
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 209 INEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGC 251
+ QV +IV+ F P V DR +D
Sbjct: 73 LQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHF 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 26.6 bits (59), Expect = 8.7
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 56 NLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQIT 114
L L N I G +L++L + N + ++++ +++ N+I
Sbjct: 28 ELVLDNCKSNDGKIEGLTAE--FVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 84
>1y62_A Conkunitzin-S1; alpha helix, beta sheet, 310 helix, kunitz fold,
toxin; 2.45A {Synthetic} PDB: 1yl2_A 2ca7_A 2j6d_A
Length = 60
Score = 24.5 bits (54), Expect = 9.8
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 37 FYSPTMKK----EYGGCAGN 52
+Y+ K+ +Y G GN
Sbjct: 24 YYNSARKQCLRFDYTGQGGN 43
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 27.0 bits (59), Expect = 9.9
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 60 LNGNPLIVSILGKDGS-SYLKHLKYLGISNKYIQKI-NSMFTAQCFIVT-DVNNNQITIF 116
+ + + + L L+ L I ++ + F + +++ N +
Sbjct: 38 IENQQHLQHL--ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95
Query: 117 HPGAMQ 122
+Q
Sbjct: 96 SWKTVQ 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.405
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,715,620
Number of extensions: 281764
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 148
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)