RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8856
(312 letters)
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 94.5 bits (233), Expect = 7e-23
Identities = 46/314 (14%), Positives = 92/314 (29%), Gaps = 26/314 (8%)
Query: 4 LICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGN 63
++ GS+ D+I+ + P + + + + +GG N A N
Sbjct: 5 VVLGSINADHILNLQS------FPTPGETVTGN----HYQVAFGGKGANQAVAAGRSGAN 54
Query: 64 PLIVSILGKDGSSYLK---HLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGA 120
++ G D V N I I
Sbjct: 55 IAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGAN 114
Query: 121 MQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIK 180
LS I A + ++ + K+ + + +E +
Sbjct: 115 AALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPA-RELPDE 173
Query: 181 IIKKSSYIIVNEYESKLLV--------SKTSLSLQKINEQVKVLIVTRGELGSDIFLNNE 232
++ I NE E++ L + + ++ +++T G G +N E
Sbjct: 174 LLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE 233
Query: 233 R-KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQK 291
++ V+A VD GD F ++ ++ R + + ++ +G Q
Sbjct: 234 GQRVPGFRVQA---VDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQP 290
Query: 292 HCPSLSEIDQRFKE 305
P EID
Sbjct: 291 SVPWREEIDAFLDR 304
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga
maritima [TaxId: 2336]}
Length = 288
Score = 93.9 bits (232), Expect = 7e-23
Identities = 30/251 (11%), Positives = 77/251 (30%), Gaps = 11/251 (4%)
Query: 46 YGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIV 105
YGG A LL +++ ++ S L+ G+ +++ T+
Sbjct: 30 YGGGVVMGAITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKS--PRTTSIENRY 87
Query: 106 TDVNNNQITIFHPGAMQLSYDDNCINNADIKI--AIISPDNCCNMIKHIKK-----ILKL 158
+ + + A + D + + + ++I +++
Sbjct: 88 GSDPDTRESFLISAADPFTESDLAFIEGEAVHINPLWYGEFPEDLIPVLRRKVMFLSADA 147
Query: 159 KIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIV 218
+ + L E K +K V+ E++ L + T+ +
Sbjct: 148 QGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETL-TGTNDLRESCRIIRSFGAK 206
Query: 219 TRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINN-LDWYTTGRLSS 277
+ + + ++ + TG GD + L G + + + ++
Sbjct: 207 IILATHASGVIVFDGNFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAA 266
Query: 278 LMGSTEISHQG 288
+ S ++ H G
Sbjct: 267 AVTSVKMRHPG 277
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 91.0 bits (224), Expect = 9e-22
Identities = 41/280 (14%), Positives = 99/280 (35%), Gaps = 16/280 (5%)
Query: 39 SPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINS 96
++ GG N+A L L V +G+D G+ + L+ G+ + ++
Sbjct: 25 KRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPG 84
Query: 97 MFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMI------- 149
+ ++ + G+ + + ++ +
Sbjct: 85 FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARA 144
Query: 150 ---KHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKK--SSYIIVNEYESKLLVSKTSL 204
+++ + + D ++++ EE +++ ++ E + + +
Sbjct: 145 FSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFGRV 204
Query: 205 SLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGII 264
+++ RG G+ F++ R VDP G GDAF +G L G +
Sbjct: 205 EEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA--VEAVDPVGAGDAFAAGYLAGAV 262
Query: 265 NNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFK 304
L RL++L+G++ + +G + P +++ K
Sbjct: 263 WGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLK 302
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId:
2336]}
Length = 299
Score = 85.2 bits (209), Expect = 1e-19
Identities = 50/309 (16%), Positives = 94/309 (30%), Gaps = 17/309 (5%)
Query: 1 MNSLICGSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL 60
+ + GS D +++ D K + + M GG N A + +
Sbjct: 3 LVISVVGSSNIDIVLKV----------DHFTKPGETQKAIEMNVFPGGKGANQAVTVAKI 52
Query: 61 NGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVN-NNQITIFHPG 119
+ ++ S+ T + FI D N+I IF
Sbjct: 53 GEKGCRFVTCIGNDDYSDLLIENYEKLGITGYIRVSLPTGRAFIEVDKTGQNRIIIFPGA 112
Query: 120 AMQLSYDD-NCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEEL 178
+L + + ++ I ++ + K + F P Q ++ + L
Sbjct: 113 NAELKKELIDWNTLSESDILLLQNEIPFETTLECAKRFNGIVIFDPAPAQGINEEIFQYL 172
Query: 179 IKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ-VKVLIVTRGELGSDIFLNNER-KIK 236
+ I + + +K E VK +IV G+ G + NE+
Sbjct: 173 DYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFP 232
Query: 237 IPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSL 296
VK VD T GD F + + + + ++ G Q P+
Sbjct: 233 TFKVK---AVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAR 289
Query: 297 SEIDQRFKE 305
E++ K
Sbjct: 290 EEVEAFLKN 298
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 308
Score = 84.9 bits (208), Expect = 2e-19
Identities = 53/315 (16%), Positives = 94/315 (29%), Gaps = 24/315 (7%)
Query: 1 MNSLIC-GSLAFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKL 59
+ +++ GS D + +L K + + +GG N
Sbjct: 1 VAAVVVVGSCMTDLVSL----------TSRLPKTGETIHGHKFFIGFGGKGANQCVQAAR 50
Query: 60 LNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVN---NNQITIF 116
L +V +GKD + A VN N I I
Sbjct: 51 LGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIV 110
Query: 117 HPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKE 176
+ L+ +D I A + + L + + + +
Sbjct: 111 AGANLLLNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIAD 170
Query: 177 ELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGELGSDIF 228
+ S NE E+++L T S E +V+I+T G G +
Sbjct: 171 LDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVL 230
Query: 229 LNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGI--INNLDWYTTGRLSSLMGSTEISH 286
E + K + + VD TG GD+F + F + NL S+ + + +
Sbjct: 231 SQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQA 290
Query: 287 QGGQKHCPSLSEIDQ 301
G Q P ++
Sbjct: 291 AGTQSSYPYKKDLPL 305
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase
{Thermotoga maritima, TM0067 [TaxId: 2336]}
Length = 333
Score = 83.2 bits (204), Expect = 8e-19
Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 45/306 (14%)
Query: 39 SPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINS 96
+ + YGG N+A L + + V+ L + G + HL+ G+ YI + +
Sbjct: 27 TDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN 86
Query: 97 MFTAQCFIVTDVNNNQITIFHPGAMQLSY-----------DDNCINNADIKIAIISPDNC 145
+ ++ +S D I
Sbjct: 87 RIGIYFLEIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLGKEL 146
Query: 146 CNMIKHIKKILKLK-----IPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVS 200
+++ K+ K + ++ +I ++ +I NE + + ++
Sbjct: 147 PLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVMIPFMEYVDVLIANEEDIEKVLG 206
Query: 201 KTSLSLQKINEQ------------------VKVLIVTRGELGSD-------IFLNNERKI 235
+ L + K + +T E S + N +
Sbjct: 207 ISVEGLDLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQPH 266
Query: 236 KIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPS 295
+ IVD G GD+F +++G + D ++ + + G S
Sbjct: 267 FSNRYEIH-IVDRVGAGDSFAGALIYGSLMGFDSQKKAEFAAAASCLKHTIPGDFVV-LS 324
Query: 296 LSEIDQ 301
+ EI++
Sbjct: 325 IEEIEK 330
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii
[TaxId: 5811]}
Length = 350
Score = 82.5 bits (202), Expect = 2e-18
Identities = 43/323 (13%), Positives = 87/323 (26%), Gaps = 49/323 (15%)
Query: 20 KFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLK 79
+ +L + +I + GG A N ++ L P +G G
Sbjct: 32 RGDATLATPEQMRIYSTLDQFNPTSLPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRG 91
Query: 80 HLKYL-----GISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNAD 134
+ G++ +++ ++ + T +D +
Sbjct: 92 QVLKELCDKEGLATRFMVAPGQSTGVCAVLINEKERTLCTHLGACGSFRLPEDWTTFASG 151
Query: 135 IK-----IAIISPDNCCNMIKHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIKKSSYI 188
++ + F + K+ + ++ ++ +
Sbjct: 152 ALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNIL 211
Query: 189 IVNEYESKLLVSKTSLS---------------------------LQKINEQVKVLIVTRG 221
NE E L +L + K++++TRG
Sbjct: 212 FGNEEEFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRG 271
Query: 222 ELGSDIFLNNE------RKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRL 275
++ +P V A++IVD G GDAF G L+ +
Sbjct: 272 HNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMC 331
Query: 276 SSLMGSTEISHQGGQKHCPSLSE 298
+ I H G SLS
Sbjct: 332 GNACAQDVIQHVG-----FSLSF 349
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga
maritima [TaxId: 2336]}
Length = 319
Score = 78.5 bits (192), Expect = 3e-17
Identities = 47/314 (14%), Positives = 97/314 (30%), Gaps = 29/314 (9%)
Query: 10 AFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSI 69
A D + E ++L +IN + GG N++ L L +
Sbjct: 10 ALDREIFIE-----DFQVNRLYRIN---DLSKTQMSPGGKGINVSIALSKLGVPSVATGF 61
Query: 70 LGKD-GSSYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIF-HPGAM------ 121
+G G ++ L+ + T + + D N IT PG
Sbjct: 62 VGGYMGKILVEELRKISKLITTNFVYVEGETRENIEIIDEKNKTITAINFPGPDVTDMDV 121
Query: 122 --QLSYDDNCINNADIKIAIIS-----PDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFT 174
L ++ D + S + CN + + + + + P ++
Sbjct: 122 NHFLRRYKMTLSKVDCVVISGSIPPGVNEGICNELVRLARERGVFVFVEQTPRLLERIYE 181
Query: 175 KEELIKIIKKSSYIIVNEYESKLLVSKTSL--SLQKINEQVKVLIVTRGELGSDIFLNNE 232
E ++K + L + +K+ E+ +V +V+ I E
Sbjct: 182 GPEFPNVVKPDLRGNHASFLGVDLKTFDDYVKLAEKLAEKSQVSVVSYEVKND-IVATRE 240
Query: 233 RKIKIPCVKADRIVDPTGCGDAFRSGVLFGII-NNLDWYTTGRLSSLMGSTEISHQGGQK 291
I + G GDA+ +G+++ I + ++ + + K
Sbjct: 241 GVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIKHGANFLEMAKFGFASALAATRRKE--K 298
Query: 292 HCPSLSEIDQRFKE 305
+ P L I + +
Sbjct: 299 YMPDLEAIKKEYDH 312
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 308
Score = 73.7 bits (179), Expect = 1e-15
Identities = 37/285 (12%), Positives = 79/285 (27%), Gaps = 19/285 (6%)
Query: 39 SPTMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINS 96
+K G N I++ +G D G + ++ L+ G+ +++ S
Sbjct: 24 VSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPS 83
Query: 97 MFTAQCFIVTDV------NNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIK 150
T FI + G+ D + + S
Sbjct: 84 APTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISST 143
Query: 151 HIKKILKLKIPFIFDPGQS----------LSMFTKEELIKIIKKSSYIIVNEYESKLLVS 200
+ + K + + +L+ I + +L
Sbjct: 144 AKEAVYKAFEIASNRSFDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIILGE 203
Query: 201 KTSLSLQKINEQVKVLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVL 260
K +IV + I + +K + + D TG GDA L
Sbjct: 204 SDPDKAAKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQV-PVEDVTGAGDALGGTFL 262
Query: 261 FGIINNLDWYTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
+ + + + + +G Q++ P+ +I+ +E
Sbjct: 263 SLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLRE 307
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC
{Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 72.4 bits (176), Expect = 4e-15
Identities = 42/312 (13%), Positives = 93/312 (29%), Gaps = 32/312 (10%)
Query: 10 AFDNIMRFEGKFSNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLLNGNPLIVSI 69
+ D + L D +++ + +P GG N+ + L G+ + +
Sbjct: 10 SIDISYLLD-----HLKLDTVNRTSQVTKTP------GGKGLNVTRVIHDLGGDVIATGV 58
Query: 70 LGKDGSSYLKHL-KYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDN 128
LG +++ + K I + T + N + + N
Sbjct: 59 LGGFHGAFIANELKKANIPQAFTSIKEE--TRDSIAILHEGNQTEILEAGPTVSPEEISN 116
Query: 129 CINNADIKIA-----IISPDNCCNMIKHI----------KKILKLKIPFIFDPGQSLSMF 173
+ N D I IS + +++ L Q L
Sbjct: 117 FLENFDQLIKQAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDSLRQVLQGP 176
Query: 174 TKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGELGSDIFLNNER 233
K LIK + ++ + S+ ++ +L K IV I ++++
Sbjct: 177 WKPYLIKPNLEELEGLLGQDFSENPLAAVQTALTKPMFAGIEWIVISLGKDGAIAKHHDQ 236
Query: 234 KIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQKHC 293
++ + +P G GDA +G+ +G+ + + G +
Sbjct: 237 FYRVKIPT-IQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMAAGMANAQERMTGH-- 293
Query: 294 PSLSEIDQRFKE 305
+ + +
Sbjct: 294 VDVENVKKHLMN 305
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 304
Score = 71.4 bits (173), Expect = 7e-15
Identities = 35/282 (12%), Positives = 80/282 (28%), Gaps = 21/282 (7%)
Query: 41 TMKKEYGGCAGNIAYNLKLLNGNPLIVSILGKD--GSSYLKHLKYLGISNKYIQKINSMF 98
+ K GG + N+ + L G + LG D G + + G+ +++ +
Sbjct: 20 SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLT 79
Query: 99 TAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIIS--------PDNCCNMIK 150
+A + + + + +Y + ++
Sbjct: 80 SAVLIVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLE 139
Query: 151 HIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKIN 210
+++ + +FD M+ + I + S + + +
Sbjct: 140 GARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQ 199
Query: 211 EQVKVL------IVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGII 264
+ L L +VD TG GDAF G+LF +
Sbjct: 200 DARYYLRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLS 259
Query: 265 NNLDW-----YTTGRLSSLMGSTEISHQGGQKHCPSLSEIDQ 301
W ++ G+ ++ +G P +++
Sbjct: 260 RANCWDHALLAEAISNANACGAMAVTAKGAMTALPFPDQLNT 301
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 342
Score = 69.0 bits (167), Expect = 6e-14
Identities = 39/280 (13%), Positives = 86/280 (30%), Gaps = 31/280 (11%)
Query: 42 MKKEYGGCAGN----IAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQKINSM 97
++ GG N + ++ + +G D + K +
Sbjct: 55 VEYHAGGSTQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNE 114
Query: 98 FTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCC----NMIKHIK 153
+N+ I + A + ++ + + C + +
Sbjct: 115 QPTGTCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPE 174
Query: 154 KILKL--------KIPFIFDPGQSLSMFTKEELIKIIKKSSYIIVNEYESKLLVSKTSLS 205
+LK+ +I + +S F KE L+K++ + NE E+ +
Sbjct: 175 SVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFE 234
Query: 206 --------------LQKINEQVKVLIVTRGELGSDIFLNNERK-IKIPCVKADRIVDPTG 250
+ +++ +++I T+G + + +E + I+D G
Sbjct: 235 TKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNG 294
Query: 251 CGDAFRSGVLFGIINNLDWYTTGRLSSLMGSTEISHQGGQ 290
GDAF G L ++++ R S I G
Sbjct: 295 AGDAFVGGFLSQLVSDKPLTECIRAGHYAASIIIRRTGCT 334
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB
{Bacillus halodurans [TaxId: 86665]}
Length = 306
Score = 67.8 bits (164), Expect = 1e-13
Identities = 32/271 (11%), Positives = 83/271 (30%), Gaps = 11/271 (4%)
Query: 42 MKKEYGGCAGNIAYNLKLLNGNPLIVSILGKDGSSYLKHL------KYLGISNKYIQKIN 95
+K+ GG N++ LK L + LG +Y+++ I + +IN
Sbjct: 31 DRKQPGGKGINVSRVLKRLGHETKALGFLGGFTGAYVRNALEKEEIGLSFIEVEGDTRIN 90
Query: 96 SMFTAQCFIVTDVNNNQITIFHPGAMQLSYDDNCINNADIKIAIISPDNCCNMIKHIKKI 155
+ + I H A+ + + + + + + + +I
Sbjct: 91 VKIKGKQETELNGTAPLIKKEHVQALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQI 150
Query: 156 LKLKIPFIFDPGQSLSMF-TKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVK 214
K + F+ ++ IK + + + + + ++ +
Sbjct: 151 AKERGAFVAVDTSGEALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIPHVQRLIGEG 210
Query: 215 VLIVTRGELGSDIFLNNERKIKIPCVKADRIVDPTGCGDAFRSGVLFGIINNLDWYTTGR 274
+ + G + + V + + + G GD+ +G L +
Sbjct: 211 IESILVSFAGDGALFASAEGMFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVP 270
Query: 275 LSSLMGSTEISHQGGQKHCPSLSEIDQRFKE 305
+ GS G + E+++ ++
Sbjct: 271 FAVAAGSATAFSDG----FCTREEVERLQQQ 297
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId:
562]}
Length = 288
Score = 34.4 bits (78), Expect = 0.012
Identities = 17/174 (9%), Positives = 50/174 (28%), Gaps = 27/174 (15%)
Query: 122 QLSYDDNCINNADIKIAII-SPDNCCNMIKHIKKILKL--KIPFIFDP---GQSLSMFTK 175
++ D + + S + +++ ++++ + + DP
Sbjct: 66 GIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVA 125
Query: 176 EELI-----KIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQ--------VKVLIVTRGE 222
+ + S I N E ++L ++++ ++++V
Sbjct: 126 PGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLA 185
Query: 223 LGS-------DIFLNNERKIKIPCVKADRIV-DPTGCGDAFRSGVLFGIINNLD 268
+ + + I D + P G GD +L ++
Sbjct: 186 RAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGAT 239
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 29.9 bits (67), Expect = 0.36
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 135 IKIAIISPDNCCNMIKHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIKKSSYIIV--N 191
+ I +S ++ MI K + +P I DP G + F E II++ + N
Sbjct: 64 LNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGN 123
Query: 192 EYESKLLVSKTS 203
E V T
Sbjct: 124 AAEIAHTVGVTD 135
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 26.8 bits (59), Expect = 1.6
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 119 GAM-QLSYDDNCINNADI------KIAIISPDNCCNMIKHIKK---ILKLKIPFIFDPGQ 168
GA+ + N AD+ + ++P + ++ L P++ DP
Sbjct: 26 GALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSI 85
Query: 169 SLSMFTKEELIKIIK 183
+L + + + ++
Sbjct: 86 TLGQYVQPHGVSVVD 100
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 264
Score = 27.2 bits (60), Expect = 2.3
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 135 IKIAIISPDNCCNMIKHIKKILKLKIPFIFDP-GQSLSMFTKEELIKIIKKSSYIIV-NE 192
I I + +M+K + +L P + DP G + F ++I+ + ++ N
Sbjct: 62 INIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNF 121
Query: 193 YESKLLVSKTS 203
E L+ +
Sbjct: 122 GEISALLGEEG 132
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
29339]}
Length = 161
Score = 26.8 bits (59), Expect = 2.4
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 51 GNIAYNLKLLNGNPLIVSILGKDGSSYLKHLKYLGISNKYIQ-KINSMFTAQCFIVTDVN 109
GN +L+ N L +G+SY +L+ I N I+ IN + T N
Sbjct: 45 GNQGDSLRFEQSNTTARYTLRGNGNSYNLYLRVSSIGNSTIRVTINGRVYTVSNVNTTTN 104
Query: 110 NNQIT 114
N+ +
Sbjct: 105 NDGVN 109
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 26.5 bits (57), Expect = 4.5
Identities = 21/172 (12%), Positives = 38/172 (22%), Gaps = 12/172 (6%)
Query: 22 SNSLLPDQLDKINVSFYSPTMKKEYGGCAGNIAYNLKLL-NGNPLIVSILGKDGSSYLKH 80
L + + + GN I +
Sbjct: 130 YEINHLPLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPE 189
Query: 81 LKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHPGAMQLSY---DDNCINNADIKI 137
L + GA + D + AD
Sbjct: 190 YSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSF 249
Query: 138 AIISPDNCCNMIKHIKKILKLKIPFIFDPGQSLSMFTKEELIKIIKKSSYII 189
A+ +PD M+ I+K Q ++ E+L+ K++ I
Sbjct: 250 AL-NPDELKEMVDGIRKTEAEL-------KQGITKPVSEKLLGSSYKTTTAI 293
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase
(KNTase), N-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 125
Score = 25.3 bits (55), Expect = 6.7
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 168 QSLSMFTKEELIKIIKKSSYIIVNEYESKLL 198
+ T+EE +KI+ + I+++Y +
Sbjct: 2 NGPIIMTREERMKIVHEIKERILDKYGDDVK 32
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 232
Score = 25.7 bits (56), Expect = 6.9
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 174 TKEELIKIIKKSSYIIVNEYESKLLVSKTSLSLQKINEQVKVLIVTRGEL 223
E +I + S+ I E + VSK L ++++ ++ +V G
Sbjct: 126 KGEIAFALIGEKSFAIPGGLEEQKKVSK---VLDEMDQAKEIELVYYGLK 172
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 25.3 bits (54), Expect = 9.6
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 76 SYLKHLKYLGISNKYIQKINSMFTAQCFIVTDVNNNQITIFHP 118
S L L+ L +N + ++S+ +NQI+ P
Sbjct: 326 SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP 368
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.405
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,191,051
Number of extensions: 57015
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 37
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)