BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8857
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4JAR4|RS11_BURVG 30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4
/ LMG 22486) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q2SU51|RS11_BURTA 30S ribosomal protein S11 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK
PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q39KE3|RS11_BURS3 30S ribosomal protein S11 OS=Burkholderia sp. (strain 383) GN=rpsK
PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q63Q35|RS11_BURPS 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A3NEF5|RS11_BURP6 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 668)
GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q3JMT7|RS11_BURP1 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A3P089|RS11_BURP0 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain
1106a) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A1V879|RS11_BURMS 30S ribosomal protein S11 OS=Burkholderia mallei (strain SAVP1)
GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q62GM9|RS11_BURMA 30S ribosomal protein S11 OS=Burkholderia mallei (strain ATCC
23344) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A2S7K0|RS11_BURM9 30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC
10229) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A3MRX8|RS11_BURM7 30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC
10247) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A9ADL7|RS11_BURM1 30S ribosomal protein S11 OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q0BJ22|RS11_BURCM 30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|B4E5E4|RS11_BURCJ 30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|A0K3P9|RS11_BURCH 30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|B1JU46|RS11_BURCC 30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain
MC0-3) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q1BRX2|RS11_BURCA 30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|B1YRQ3|RS11_BURA4 30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6)
GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 116/133 (87%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGSR
Sbjct: 1 MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61 KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|B2UEJ5|RS11_RALPJ 30S ribosomal protein S11 OS=Ralstonia pickettii (strain 12J)
GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 115/133 (86%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R RKK++K++ +G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKAANTAAQRARKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A + GIKNLEVRIKGPGPGRES+VRALNNLGIKI IEDVTP+
Sbjct: 61 KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKGPGPGRESAVRALNNLGIKIQLIEDVTPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q8XV36|RS11_RALSO 30S ribosomal protein S11 OS=Ralstonia solanacearum (strain
GMI1000) GN=rpsK PE=3 SV=1
Length = 133
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 115/133 (86%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R RKK++K++ +G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKAANTAAQRARKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAESAG++A + GIKNLEVRIKGPGPGRES+VRALNNLGIKI IEDVTP+
Sbjct: 61 KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKGPGPGRESAVRALNNLGIKIQVIEDVTPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q13TJ4|RS11_BURXL 30S ribosomal protein S11 OS=Burkholderia xenovorans (strain LB400)
GN=rpsK PE=3 SV=1
Length = 134
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/134 (75%), Positives = 119/134 (88%), Gaps = 1/134 (0%)
Query: 1 MAKVLNNTNA-RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN+ A R+RKK+KK++ EGV H+HASFNNTIITITDR+G L+WA+SG FKGS
Sbjct: 1 MAKASNNSAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTP
Sbjct: 61 RKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPPKRRRI 134
>sp|A9IHR9|RS11_BORPD 30S ribosomal protein S11 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rpsK PE=3 SV=1
Length = 133
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 118/133 (88%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK + +R+RKK+KK++++G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A+E+GIK LEVRIKGPGPGRESSVRALN LGIKI+ I D+TP+
Sbjct: 61 KSTPFAAQVAAETAGRVALEYGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q7VTA7|RS11_BORPE 30S ribosomal protein S11 OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=rpsK PE=3 SV=1
Length = 133
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 118/133 (88%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK + +R+RKK+KK++++G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A+E+GIK LEVRIKGPGPGRESSVRALN LGIKI+ I D+TP+
Sbjct: 61 KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q7W2D1|RS11_BORPA 30S ribosomal protein S11 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rpsK PE=3 SV=1
Length = 133
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 118/133 (88%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK + +R+RKK+KK++++G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A+E+GIK LEVRIKGPGPGRESSVRALN LGIKI+ I D+TP+
Sbjct: 61 KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q7WR99|RS11_BORBR 30S ribosomal protein S11 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rpsK PE=3 SV=1
Length = 133
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 118/133 (88%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK + +R+RKK+KK++++G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A+E+GIK LEVRIKGPGPGRESSVRALN LGIKI+ I D+TP+
Sbjct: 61 KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q2L245|RS11_BORA1 30S ribosomal protein S11 OS=Bordetella avium (strain 197N) GN=rpsK
PE=3 SV=1
Length = 133
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 118/133 (88%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK + +R+RKK+KK++++G+AH+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A+E+GIK LEVRIKGPGPGRESSVRALN LGIKI+ I D+TP+
Sbjct: 61 KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q3SLM6|RS11_THIDA 30S ribosomal protein S11 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rpsK PE=3 SV=1
Length = 130
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 113/126 (89%)
Query: 8 TNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAA 67
T AR+RKK+KK++ EG+AHIHASFNNTI+TITDR+G LSWA++G FKGSRKSTPFAA
Sbjct: 5 TAARVRKKVKKNVAEGIAHIHASFNNTIVTITDRQGNALSWATAGGAGFKGSRKSTPFAA 64
Query: 68 QVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRP 127
QVAAE+AGK+A E+G+KNLEVRIKGPGPGRES+VRALN LG KI I DVTPIPHNGCRP
Sbjct: 65 QVAAENAGKMAQEYGVKNLEVRIKGPGPGRESTVRALNALGFKIVAISDVTPIPHNGCRP 124
Query: 128 SKRRRV 133
SK+RR+
Sbjct: 125 SKKRRI 130
>sp|Q1LI61|RS11_RALME 30S ribosomal protein S11 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpsK PE=3 SV=1
Length = 133
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/133 (74%), Positives = 115/133 (86%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK NN R RKK+KK++ +G+AH+HASFNNTIITITDR+G LSWA++G FKGSR
Sbjct: 1 MAKGPNNAAQRARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A + GIKNLEVRIKGPGPGRES+VRALN LGIKI IEDVTP+
Sbjct: 61 KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKGPGPGRESAVRALNALGIKIAVIEDVTPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
>sp|Q7NQH5|RS11_CHRVO 30S ribosomal protein S11 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsK PE=3 SV=1
Length = 131
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/133 (73%), Positives = 115/133 (86%), Gaps = 2/133 (1%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK NT R+RKK++K ++EG+ H+HASFNNTIITITDR+G LSWA+SG FKGSR
Sbjct: 1 MAKA--NTAVRVRKKVRKSVSEGIVHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR 58
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE AGK+A E+G+KNLEVRIKGPGPGRES+VRALN+LG KIT I DVTP+
Sbjct: 59 KSTPFAAQVAAEHAGKVAQEYGVKNLEVRIKGPGPGRESAVRALNSLGFKITSISDVTPV 118
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP K+RR+
Sbjct: 119 PHNGCRPPKKRRI 131
>sp|B3R7E5|RS11_CUPTR 30S ribosomal protein S11 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpsK PE=3 SV=1
Length = 132
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/133 (75%), Positives = 116/133 (87%), Gaps = 1/133 (0%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK NN AR RKK+KK++ +G+AH+HASFNNTIITITDR+G LSWA++G FKGSR
Sbjct: 1 MAKGPNNA-ARARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR 59
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A + GIKNLEVRIKGPGPGRES+VRALN LGIKI IEDVTPI
Sbjct: 60 KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKGPGPGRESAVRALNALGIKIAIIEDVTPI 119
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 120 PHNGCRPPKRRRI 132
>sp|Q46WG7|RS11_CUPPJ 30S ribosomal protein S11 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpsK PE=3 SV=1
Length = 132
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/133 (75%), Positives = 116/133 (87%), Gaps = 1/133 (0%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK NN AR RKK+KK++ +G+AH+HASFNNTIITITDR+G LSWA++G FKGSR
Sbjct: 1 MAKGPNNA-ARARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR 59
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A + GIKNLEVRIKGPGPGRES+VRALN LGIKI IEDVTPI
Sbjct: 60 KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKGPGPGRESAVRALNALGIKIAIIEDVTPI 119
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 120 PHNGCRPPKRRRI 132
>sp|Q0K643|RS11_CUPNH 30S ribosomal protein S11 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1
Length = 132
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/133 (75%), Positives = 116/133 (87%), Gaps = 1/133 (0%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK NN AR RKK+KK++ +G+AH+HASFNNTIITITDR+G LSWA++G FKGSR
Sbjct: 1 MAKGPNNA-ARARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR 59
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG++A + GIKNLEVRIKGPGPGRES+VRALN LGIKI IEDVTPI
Sbjct: 60 KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKGPGPGRESAVRALNALGIKIAIIEDVTPI 119
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 120 PHNGCRPPKRRRI 132
>sp|A4SUY4|RS11_POLSQ 30S ribosomal protein S11 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rpsK PE=3 SV=1
Length = 135
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/135 (74%), Positives = 118/135 (87%), Gaps = 2/135 (1%)
Query: 1 MAKVLNNTNA--RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKG 58
MAK + + A R RKK+KK++ +G+AH+HASFNNTIITITDR+G LSWA+SG FKG
Sbjct: 1 MAKQQSASAASQRARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATSGGQGFKG 60
Query: 59 SRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118
SRKSTPFAAQVAAE AGK A+E GIKNLEV+IKGPGPGRES+VRALN+LGIKIT+I+DVT
Sbjct: 61 SRKSTPFAAQVAAEVAGKAAVECGIKNLEVQIKGPGPGRESAVRALNSLGIKITEIQDVT 120
Query: 119 PIPHNGCRPSKRRRV 133
P+PHNGCRP KRRR+
Sbjct: 121 PVPHNGCRPPKRRRI 135
>sp|A1W331|RS11_ACISJ 30S ribosomal protein S11 OS=Acidovorax sp. (strain JS42) GN=rpsK
PE=3 SV=1
Length = 134
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN R+RKK++K+I++G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKSPANNAAQRVRKKVRKNISDGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AIE GIKNL+V IKGPGPGRESSVRAL LGI+IT I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRITSISDVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|B9MBW0|RS11_ACIET 30S ribosomal protein S11 OS=Acidovorax ebreus (strain TPSY)
GN=rpsK PE=3 SV=1
Length = 134
Score = 205 bits (522), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN R+RKK++K+I++G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKSPANNAAQRVRKKVRKNISDGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AIE GIKNL+V IKGPGPGRESSVRAL LGI+IT I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRITSISDVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|A9BRX3|RS11_DELAS 30S ribosomal protein S11 OS=Delftia acidovorans (strain DSM 14801
/ SPH-1) GN=rpsK PE=3 SV=1
Length = 134
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN R+RKK++K+I++G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKSPANNAAQRVRKKVRKNISDGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AIE GIKNL+V IKGPGPGRESSVRAL LGI+IT I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRITSIADVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|A1TJU0|RS11_ACIAC 30S ribosomal protein S11 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpsK PE=3 SV=1
Length = 134
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 98/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN R+RKK++K++++G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKSPANNAAQRVRKKVRKNVSDGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AIE GIKNL+V IKGPGPGRESSVRAL LGI+IT I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRITSISDVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|A1VJ38|RS11_POLNA 30S ribosomal protein S11 OS=Polaromonas naphthalenivorans (strain
CJ2) GN=rpsK PE=3 SV=1
Length = 134
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 1 MAKVLNNTNA-RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN+ A R+RKK++K++ +G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKSPNNSAAQRVRKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AIE GIKNL+V IKGPGPGRESSVRAL LGI+I I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRINSIADVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|A2SLD3|RS11_METPP 30S ribosomal protein S11 OS=Methylibium petroleiphilum (strain
PM1) GN=rpsK PE=3 SV=1
Length = 133
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/133 (72%), Positives = 111/133 (83%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK N R+RKK++K++++GVAH+HASFNNTIITITDR+G L+WASSG FKGSR
Sbjct: 1 MAKAPNTAAQRVRKKVRKNVSDGVAHVHASFNNTIITITDRQGNALAWASSGGQGFKGSR 60
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE AG+ A + GIKNLEV IKGPGPGRESSVRAL LGI+I I DVTP+
Sbjct: 61 KSTPFAAQVAAEVAGRAAQDQGIKNLEVEIKGPGPGRESSVRALAALGIRIVSISDVTPV 120
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP KRRR+
Sbjct: 121 PHNGCRPQKRRRI 133
>sp|Q2YAX4|RS11_NITMU 30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rpsK PE=3 SV=1
Length = 129
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 108/123 (87%)
Query: 11 RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVA 70
R+RKK+KK++ EG+AH+HASFNNTI+TITDR+G LSWA+SG FKGSRKSTPFAAQVA
Sbjct: 7 RVRKKVKKNVAEGIAHVHASFNNTIVTITDRQGNALSWATSGGAGFKGSRKSTPFAAQVA 66
Query: 71 AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKR 130
AE AG+ A E+G+KNLEVRIKGPGPGRES+VRALN G KIT I DVTP+PHNGCRP K+
Sbjct: 67 AEQAGRAAQEYGVKNLEVRIKGPGPGRESAVRALNAAGFKITSISDVTPVPHNGCRPPKK 126
Query: 131 RRV 133
RR+
Sbjct: 127 RRI 129
>sp|A1WK94|RS11_VEREI 30S ribosomal protein S11 OS=Verminephrobacter eiseniae (strain
EF01-2) GN=rpsK PE=3 SV=1
Length = 134
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 114/134 (85%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK +NN R+RKK++K++ +G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKSPVNNAAQRVRKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AI+ GIKNL+V I+GPGPGRESSVRAL LGI+IT I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIDQGIKNLDVEIRGPGPGRESSVRALGALGIRITSISDVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|B1Y8B3|RS11_LEPCP 30S ribosomal protein S11 OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=rpsK PE=3 SV=1
Length = 134
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/134 (73%), Positives = 113/134 (84%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK +NN R+ KK++K+I +GVAH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKAPVNNAARRVSKKVRKNIADGVAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVAAE AG+ A E GIKNL+V+IKGPGPGRESSVRAL +LGI+I I DVTP
Sbjct: 61 RKSTPFAAQVAAEVAGRAAQEQGIKNLDVKIKGPGPGRESSVRALASLGIRIASISDVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|Q12G79|RS11_POLSJ 30S ribosomal protein S11 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpsK PE=3 SV=1
Length = 134
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 109/128 (85%)
Query: 6 NNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPF 65
NN R+RKK++K++ +G+AH+HASFNNTIITITDR+G LSWASSG FKGSRKSTPF
Sbjct: 7 NNAAQRVRKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSRKSTPF 66
Query: 66 AAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGC 125
AAQVA+E AG+ AIE GIKNL+V IKGPGPGRESSVRAL LGI+I I DVTP+PHNGC
Sbjct: 67 AAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRINSIADVTPVPHNGC 126
Query: 126 RPSKRRRV 133
RP KRRR+
Sbjct: 127 RPQKRRRI 134
>sp|C5CQ77|RS11_VARPS 30S ribosomal protein S11 OS=Variovorax paradoxus (strain S110)
GN=rpsK PE=3 SV=1
Length = 134
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 112/134 (83%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK NN R+RKK++K++ +G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKAPANNAAQRVRKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ A+E GIKNL+V IKGPGPGRESSVRAL LGI+I I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAVEQGIKNLDVEIKGPGPGRESSVRALAALGIRINSIADVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|Q82X71|RS11_NITEU 30S ribosomal protein S11 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rpsK PE=3 SV=1
Length = 129
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 93/123 (75%), Positives = 110/123 (89%)
Query: 11 RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVA 70
+IRKK+KK++ EGVAHIHASFNNTI+TI+DR+G LSWA+SG V FKGSRKSTPFAAQVA
Sbjct: 7 KIRKKVKKNVVEGVAHIHASFNNTIVTISDRQGNALSWATSGGVGFKGSRKSTPFAAQVA 66
Query: 71 AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKR 130
AE AG+ A+E+G+KNLEVR+KGPGPGR+S+VRALN G KIT I DVTPIPHNGCRP K+
Sbjct: 67 AEHAGRAALEYGVKNLEVRVKGPGPGRDSAVRALNATGFKITSITDVTPIPHNGCRPPKK 126
Query: 131 RRV 133
RR+
Sbjct: 127 RRI 129
>sp|Q21QP7|RS11_RHOFD 30S ribosomal protein S11 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rpsK PE=3 SV=1
Length = 134
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/134 (70%), Positives = 112/134 (83%), Gaps = 1/134 (0%)
Query: 1 MAKV-LNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
MAK +N R+RKK++K++ +G+AH+HASFNNTIITITDR+G LSWASSG FKGS
Sbjct: 1 MAKAPASNAAQRVRKKVRKNVADGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGS 60
Query: 60 RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
RKSTPFAAQVA+E AG+ AIE G+KNL+V IKGPGPGRESSVRAL LGI+I I DVTP
Sbjct: 61 RKSTPFAAQVASEVAGRAAIEQGVKNLDVEIKGPGPGRESSVRALAALGIRINMIADVTP 120
Query: 120 IPHNGCRPSKRRRV 133
+PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPQKRRRI 134
>sp|A4G9R5|RS11_HERAR 30S ribosomal protein S11 OS=Herminiimonas arsenicoxydans GN=rpsK
PE=3 SV=1
Length = 134
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/123 (83%), Positives = 115/123 (93%)
Query: 11 RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVA 70
R+RKK+KK++ EG+AHIHASFNNTIITITDR+G LSWA+SG FKGSRKSTPFAAQVA
Sbjct: 12 RVRKKVKKNVAEGIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVA 71
Query: 71 AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKR 130
AE+AGK+AIE GIKNLEVRIKGPGPGRESSVRALNNLGIKITQI+DVTP+PHNGCRP KR
Sbjct: 72 AEAAGKVAIECGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIQDVTPVPHNGCRPPKR 131
Query: 131 RRV 133
RR+
Sbjct: 132 RRI 134
>sp|A6T3I0|RS11_JANMA 30S ribosomal protein S11 OS=Janthinobacterium sp. (strain
Marseille) GN=rpsK PE=3 SV=1
Length = 134
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/123 (82%), Positives = 115/123 (93%)
Query: 11 RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVA 70
R+RKK+KK++ EG+AH+HASFNNTIITITDR+G LSWA+SG FKGSRKSTPFAAQVA
Sbjct: 12 RVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVA 71
Query: 71 AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKR 130
AE+AGK+AIE GIKNLEVRIKGPGPGRES+VRALNNLGIKITQI+DVTP+PHNGCRP KR
Sbjct: 72 AEAAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTPVPHNGCRPPKR 131
Query: 131 RRV 133
RR+
Sbjct: 132 RRI 134
>sp|Q0AIH3|RS11_NITEC 30S ribosomal protein S11 OS=Nitrosomonas eutropha (strain C91)
GN=rpsK PE=3 SV=1
Length = 129
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 92/121 (76%), Positives = 108/121 (89%)
Query: 13 RKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAE 72
RKKIKK+I EGVAHIHASFNNTI+TI+DR+G LSWA+SG V FKGSRKSTPFAAQVAAE
Sbjct: 9 RKKIKKNIIEGVAHIHASFNNTIVTISDRQGNALSWATSGGVGFKGSRKSTPFAAQVAAE 68
Query: 73 SAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRR 132
AG+ A+E+G+KNLE+R+KGPGPGR+S+VRALN G KIT I DVTP+PHNGCRP K+RR
Sbjct: 69 HAGRAALEYGVKNLEIRVKGPGPGRDSAVRALNATGFKITSITDVTPVPHNGCRPPKKRR 128
Query: 133 V 133
+
Sbjct: 129 I 129
>sp|Q0VSI0|RS11_ALCBS 30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1
Length = 132
Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 112/133 (84%), Gaps = 1/133 (0%)
Query: 1 MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
MAK ++ AR RKK+ + + +G+AH+HASFNNTIITITDR+G LSWA+SG F+GSR
Sbjct: 1 MAKSKKDSGAR-RKKVTRTVADGIAHVHASFNNTIITITDRQGNALSWATSGGAGFRGSR 59
Query: 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
KSTPFAAQVAAE+AG A ++G+KNLEVR+KGPGPGRESS+RALN G KIT IEDVTPI
Sbjct: 60 KSTPFAAQVAAENAGNAAKDYGLKNLEVRVKGPGPGRESSIRALNGCGYKITHIEDVTPI 119
Query: 121 PHNGCRPSKRRRV 133
PHNGCRP K+RRV
Sbjct: 120 PHNGCRPPKKRRV 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,518,382
Number of Sequences: 539616
Number of extensions: 1781271
Number of successful extensions: 7026
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 5781
Number of HSP's gapped (non-prelim): 1046
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)