Query psy8857
Match_columns 133
No_of_seqs 126 out of 877
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:07:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05309 30S ribosomal protein 100.0 1.2E-51 2.5E-56 301.7 16.6 117 17-133 12-128 (128)
2 COG0100 RpsK Ribosomal protein 100.0 1.1E-50 2.4E-55 295.4 15.5 121 13-133 9-129 (129)
3 PRK09607 rps11p 30S ribosomal 100.0 1.3E-49 2.7E-54 291.8 15.9 114 20-133 7-129 (132)
4 PF00411 Ribosomal_S11: Riboso 100.0 5.6E-50 1.2E-54 285.9 13.1 110 23-132 1-110 (110)
5 PTZ00129 40S ribosomal protein 100.0 9.4E-49 2E-53 291.6 15.8 116 17-132 23-147 (149)
6 TIGR03632 bact_S11 30S ribosom 100.0 1.2E-48 2.6E-53 278.4 15.5 108 23-130 1-108 (108)
7 CHL00041 rps11 ribosomal prote 100.0 2.9E-46 6.2E-51 269.2 15.6 110 16-125 7-116 (116)
8 TIGR03628 arch_S11P archaeal r 100.0 4.7E-44 1E-48 256.8 14.6 104 22-125 2-114 (114)
9 PTZ00090 40S ribosomal protein 100.0 8.9E-43 1.9E-47 272.0 14.8 110 23-133 119-233 (233)
10 KOG0408|consensus 100.0 1.4E-41 3E-46 255.9 13.3 116 18-133 75-190 (190)
11 KOG0407|consensus 100.0 2.5E-27 5.5E-32 169.3 13.3 114 18-132 12-135 (139)
12 cd00432 Ribosomal_L18_L5e Ribo 98.2 2.1E-05 4.5E-10 55.1 10.2 89 21-109 10-103 (103)
13 PRK08569 rpl18p 50S ribosomal 97.8 0.0004 8.8E-09 54.2 11.2 100 22-130 32-140 (193)
14 PF00861 Ribosomal_L18p: Ribos 97.8 0.00018 4E-09 51.8 8.5 94 18-111 19-119 (119)
15 CHL00139 rpl18 ribosomal prote 97.8 0.0005 1.1E-08 49.2 10.5 90 21-110 14-108 (109)
16 TIGR00060 L18_bact ribosomal p 97.7 0.00067 1.5E-08 48.9 10.2 88 21-110 23-113 (114)
17 PRK05593 rplR 50S ribosomal pr 97.6 0.00096 2.1E-08 48.2 9.9 91 20-110 22-116 (117)
18 COG0256 RplR Ribosomal protein 96.6 0.039 8.4E-07 40.5 9.8 91 21-111 28-125 (125)
19 PTZ00032 60S ribosomal protein 96.1 0.074 1.6E-06 42.0 9.5 89 22-110 105-210 (211)
20 PTZ00069 60S ribosomal protein 89.0 3.2 7E-05 34.6 8.3 63 18-81 44-112 (300)
21 cd05313 NAD_bind_2_Glu_DH NAD( 85.8 2.3 5E-05 34.5 5.7 63 56-119 10-72 (254)
22 cd01076 NAD_bind_1_Glu_DH NAD( 78.1 6.4 0.00014 31.1 5.5 62 57-119 4-65 (227)
23 PTZ00079 NADP-specific glutama 75.3 9.4 0.0002 33.6 6.2 62 57-119 210-271 (454)
24 PLN02477 glutamate dehydrogena 72.2 12 0.00026 32.3 6.1 60 58-118 180-239 (410)
25 PF00044 Gp_dh_N: Glyceraldehy 62.7 12 0.00025 27.9 3.7 34 86-119 1-35 (151)
26 PRK14030 glutamate dehydrogena 61.5 25 0.00054 30.9 6.0 60 59-119 203-262 (445)
27 cd05211 NAD_bind_Glu_Leu_Phe_V 60.9 22 0.00048 27.8 5.1 51 68-119 7-57 (217)
28 PRK09414 glutamate dehydrogena 59.7 25 0.00053 30.8 5.6 60 58-118 206-265 (445)
29 PRK14840 undecaprenyl pyrophos 55.4 86 0.0019 25.4 7.7 60 63-122 47-123 (250)
30 cd07996 WGR_MMR_like WGR domai 54.3 35 0.00077 21.6 4.5 45 40-84 24-72 (74)
31 PRK14829 undecaprenyl pyrophos 52.9 1E+02 0.0022 24.8 7.7 60 62-121 38-114 (243)
32 PF00208 ELFV_dehydrog: Glutam 52.5 17 0.00037 29.0 3.2 57 62-118 9-65 (244)
33 PRK14841 undecaprenyl pyrophos 51.9 1E+02 0.0022 24.6 7.6 61 62-122 27-104 (233)
34 TIGR03234 OH-pyruv-isom hydrox 51.8 48 0.001 25.6 5.6 45 71-116 16-60 (254)
35 PF08444 Gly_acyl_tr_C: Aralky 51.5 36 0.00079 23.4 4.3 68 37-110 2-76 (89)
36 PRK14834 undecaprenyl pyrophos 50.2 1.2E+02 0.0026 24.5 7.8 60 63-122 39-115 (249)
37 COG1184 GCD2 Translation initi 49.8 81 0.0018 26.4 6.9 47 70-118 131-180 (301)
38 PRK14031 glutamate dehydrogena 49.0 50 0.0011 29.0 5.8 59 57-116 201-259 (444)
39 PF03198 Glyco_hydro_72: Gluca 48.9 42 0.0009 28.3 5.1 50 63-112 47-96 (314)
40 COG3981 Predicted acetyltransf 48.4 53 0.0012 25.4 5.2 83 19-116 78-162 (174)
41 PTZ00349 dehydrodolichyl dipho 47.4 1.2E+02 0.0026 25.7 7.6 60 63-122 44-123 (322)
42 PRK14831 undecaprenyl pyrophos 47.2 1E+02 0.0022 24.9 6.9 61 62-122 44-121 (249)
43 PRK13260 2,3-diketo-L-gulonate 45.9 1.8E+02 0.0039 24.4 9.4 87 40-127 62-152 (332)
44 PF05677 DUF818: Chlamydia CHL 45.4 2E+02 0.0043 24.8 8.7 60 62-121 189-256 (365)
45 COG2099 CobK Precorrin-6x redu 45.3 31 0.00066 28.3 3.7 28 62-90 74-101 (257)
46 PRK10240 undecaprenyl pyrophos 45.1 57 0.0012 26.0 5.2 60 63-122 18-94 (229)
47 PRK14830 undecaprenyl pyrophos 43.2 1.7E+02 0.0036 23.7 7.6 61 62-122 46-123 (251)
48 PRK14837 undecaprenyl pyrophos 42.4 1.6E+02 0.0035 23.5 7.4 61 62-122 30-107 (230)
49 PRK14832 undecaprenyl pyrophos 42.2 1.9E+02 0.004 23.5 7.8 60 63-122 43-119 (253)
50 PRK15425 gapA glyceraldehyde-3 42.1 34 0.00073 28.8 3.6 34 86-119 3-37 (331)
51 KOG1602|consensus 41.3 73 0.0016 26.3 5.3 76 41-121 44-139 (271)
52 PRK14836 undecaprenyl pyrophos 40.0 1.4E+02 0.0031 24.1 6.8 60 63-122 39-115 (253)
53 PRK14827 undecaprenyl pyrophos 39.5 98 0.0021 25.8 5.9 60 63-122 92-168 (296)
54 cd00475 CIS_IPPS Cis (Z)-Isopr 39.4 78 0.0017 25.1 5.1 61 62-122 24-101 (221)
55 PRK13210 putative L-xylulose 5 38.5 93 0.002 24.2 5.5 45 71-115 18-72 (284)
56 PRK08334 translation initiatio 38.5 1.2E+02 0.0026 26.0 6.3 48 70-118 179-229 (356)
57 PRK09989 hypothetical protein; 38.4 95 0.0021 24.1 5.5 43 72-115 18-60 (258)
58 cd01853 Toc34_like Toc34-like 37.8 1.1E+02 0.0023 24.4 5.8 48 61-108 7-55 (249)
59 TIGR00542 hxl6Piso_put hexulos 37.7 75 0.0016 24.9 4.8 44 72-115 19-72 (279)
60 PRK09542 manB phosphomannomuta 37.7 2E+02 0.0043 24.7 7.7 61 61-122 13-76 (445)
61 COG1710 Uncharacterized protei 37.6 39 0.00084 24.9 2.8 54 69-122 64-123 (139)
62 PRK07729 glyceraldehyde-3-phos 36.7 46 0.00099 28.2 3.6 34 86-119 3-37 (343)
63 COG0241 HisB Histidinol phosph 36.6 2E+02 0.0043 22.2 6.9 57 74-130 39-108 (181)
64 PRK14835 undecaprenyl pyrophos 36.5 2.2E+02 0.0047 23.4 7.4 59 64-122 67-144 (275)
65 TIGR00055 uppS undecaprenyl di 36.5 1.2E+02 0.0027 24.1 5.8 60 63-122 24-100 (226)
66 PRK14839 undecaprenyl pyrophos 36.3 2.3E+02 0.005 22.9 7.8 60 63-122 34-110 (239)
67 PRK07757 acetyltransferase; Pr 36.1 91 0.002 21.6 4.6 54 65-127 82-135 (152)
68 PF13420 Acetyltransf_4: Acety 35.5 1.5E+02 0.0032 20.4 6.5 46 66-114 93-139 (155)
69 PRK14842 undecaprenyl pyrophos 35.4 2.4E+02 0.0051 22.7 7.7 60 63-122 33-109 (241)
70 PF08901 DUF1847: Protein of u 35.3 78 0.0017 24.1 4.3 44 71-115 43-88 (157)
71 cd05799 PGM2 This CD includes 35.1 2.3E+02 0.005 24.4 7.8 61 62-122 20-87 (487)
72 PRK07564 phosphoglucomutase; V 34.8 2.2E+02 0.0047 25.2 7.7 70 52-121 41-119 (543)
73 PRK01060 endonuclease IV; Prov 33.9 1.1E+02 0.0023 24.0 5.1 52 72-123 15-75 (281)
74 TIGR03694 exosort_acyl putativ 33.9 1.3E+02 0.0028 23.8 5.6 57 64-128 154-210 (241)
75 COG0027 PurT Formate-dependent 33.8 2.1E+02 0.0045 24.7 6.9 70 20-92 193-273 (394)
76 TIGR03175 AllD ureidoglycolate 33.2 3E+02 0.0065 23.3 10.0 77 50-127 73-152 (349)
77 PRK10887 glmM phosphoglucosami 32.7 2.9E+02 0.0063 23.6 7.9 71 50-121 6-79 (443)
78 PLN00105 malate/L-lactate dehy 32.4 3E+02 0.0065 23.1 9.6 77 50-127 62-142 (330)
79 cd01075 NAD_bind_Leu_Phe_Val_D 32.1 98 0.0021 23.6 4.5 53 66-119 8-61 (200)
80 COG4782 Uncharacterized protei 32.0 95 0.0021 26.8 4.7 49 45-94 151-201 (377)
81 COG0334 GdhA Glutamate dehydro 31.8 1.2E+02 0.0027 26.4 5.5 61 61-122 184-244 (411)
82 PRK13209 L-xylulose 5-phosphat 31.7 1.1E+02 0.0025 23.8 5.0 44 72-115 24-77 (283)
83 cd05801 PGM_like3 This bacteri 31.6 3.6E+02 0.0078 23.7 8.8 76 46-121 21-102 (522)
84 PRK09997 hydroxypyruvate isome 31.4 1.4E+02 0.003 23.2 5.3 42 72-114 18-59 (258)
85 PLN00124 succinyl-CoA ligase [ 30.4 1.4E+02 0.0031 25.9 5.7 49 68-117 361-409 (422)
86 PRK14828 undecaprenyl pyrophos 29.1 1.5E+02 0.0034 23.9 5.4 59 64-122 53-125 (256)
87 PRK08335 translation initiatio 29.0 1.6E+02 0.0035 24.1 5.5 47 70-118 121-170 (275)
88 PRK06920 dnaE DNA polymerase I 28.9 49 0.0011 32.3 2.8 28 93-123 340-367 (1107)
89 KOG2299|consensus 28.7 1.7E+02 0.0037 24.3 5.5 61 49-111 105-166 (301)
90 TIGR00512 salvage_mtnA S-methy 28.4 1.1E+02 0.0024 25.8 4.5 47 70-117 166-215 (331)
91 KOG4716|consensus 28.2 96 0.0021 27.2 4.1 45 85-129 19-75 (503)
92 PRK05673 dnaE DNA polymerase I 27.8 53 0.0011 32.1 2.8 28 93-123 355-382 (1135)
93 PF05990 DUF900: Alpha/beta hy 27.3 1.9E+02 0.0041 22.6 5.5 79 22-104 19-111 (233)
94 PRK14838 undecaprenyl pyrophos 27.3 2.1E+02 0.0046 23.0 5.8 60 63-122 35-109 (242)
95 cd04518 TBP_archaea archaeal T 27.3 2E+02 0.0044 21.8 5.5 49 34-85 39-87 (174)
96 cd03089 PMM_PGM The phosphoman 26.8 3.1E+02 0.0067 23.3 7.1 61 61-122 14-77 (443)
97 PF11589 DUF3244: Domain of un 26.7 92 0.002 21.3 3.2 25 26-50 42-66 (106)
98 PRK08535 translation initiatio 26.7 1.9E+02 0.0041 23.9 5.6 46 70-117 132-180 (310)
99 PRK15490 Vi polysaccharide bio 26.6 1E+02 0.0022 28.1 4.3 71 46-118 164-240 (578)
100 KOG0747|consensus 26.4 1.7E+02 0.0038 24.7 5.3 38 61-98 153-193 (331)
101 PRK04266 fibrillarin; Provisio 25.8 2.6E+02 0.0057 21.8 6.0 60 64-123 152-217 (226)
102 PRK14324 glmM phosphoglucosami 25.4 3.2E+02 0.0069 23.4 7.0 70 50-121 6-79 (446)
103 PRK06826 dnaE DNA polymerase I 25.4 58 0.0013 32.0 2.6 28 93-123 355-382 (1151)
104 PRK09856 fructoselysine 3-epim 25.3 2.1E+02 0.0045 22.2 5.4 45 71-115 15-67 (275)
105 PTZ00023 glyceraldehyde-3-phos 25.3 91 0.002 26.3 3.5 34 86-119 3-38 (337)
106 TIGR00524 eIF-2B_rel eIF-2B al 24.9 1.5E+02 0.0031 24.6 4.6 47 70-117 138-187 (303)
107 cd04516 TBP_eukaryotes eukaryo 24.7 2.4E+02 0.0053 21.4 5.5 35 48-84 52-86 (174)
108 TIGR02530 flg_new flagellar op 24.7 95 0.0021 21.7 2.9 22 22-43 60-81 (96)
109 PRK10646 ADP-binding protein; 24.6 3E+02 0.0065 20.5 6.4 43 63-109 10-54 (153)
110 PRK06371 translation initiatio 24.5 2E+02 0.0043 24.3 5.4 47 70-117 156-205 (329)
111 PTZ00353 glycosomal glyceralde 24.4 95 0.0021 26.3 3.5 34 86-119 3-38 (342)
112 PF01661 Macro: Macro domain; 24.4 1.8E+02 0.0039 19.2 4.3 39 59-97 70-108 (118)
113 cd05800 PGM_like2 This PGM-lik 24.4 4.1E+02 0.0089 22.7 7.4 61 61-121 15-80 (461)
114 TIGR01132 pgm phosphoglucomuta 24.2 4E+02 0.0087 23.6 7.5 72 50-121 43-120 (543)
115 PF02878 PGM_PMM_I: Phosphoglu 24.1 2.6E+02 0.0057 19.6 7.0 70 51-121 7-80 (137)
116 PRK09875 putative hydrolase; P 24.0 2.1E+02 0.0046 23.4 5.4 38 75-113 40-79 (292)
117 TIGR00594 polc DNA-directed DN 24.0 67 0.0014 31.1 2.7 28 93-123 359-386 (1022)
118 PF13207 AAA_17: AAA domain; P 23.9 90 0.002 20.8 2.7 29 88-116 2-32 (121)
119 PRK07374 dnaE DNA polymerase I 23.8 68 0.0015 31.5 2.8 28 93-123 366-393 (1170)
120 PRK08057 cobalt-precorrin-6x r 23.7 99 0.0022 24.8 3.3 27 62-89 73-99 (248)
121 PF01261 AP_endonuc_2: Xylose 23.6 60 0.0013 23.4 1.9 43 76-118 2-50 (213)
122 PRK00394 transcription factor; 23.5 3E+02 0.0066 20.9 5.8 49 34-85 38-86 (179)
123 PRK07135 dnaE DNA polymerase I 23.5 61 0.0013 31.3 2.3 28 93-123 289-316 (973)
124 COG4874 Uncharacterized protei 23.5 3.2E+02 0.0069 22.7 6.2 80 37-116 135-244 (318)
125 PRK14742 thrL thr operon leade 23.4 58 0.0013 17.5 1.3 15 30-44 11-25 (28)
126 PRK07279 dnaE DNA polymerase I 23.3 71 0.0015 31.1 2.7 28 93-123 297-324 (1034)
127 TIGR01455 glmM phosphoglucosam 23.1 4.7E+02 0.01 22.2 8.4 69 52-121 5-78 (443)
128 TIGR00511 ribulose_e2b2 ribose 23.0 4.3E+02 0.0092 21.7 7.3 46 70-117 127-175 (301)
129 cd03088 ManB ManB is a bacteri 22.9 4.8E+02 0.01 22.4 7.6 61 61-122 13-77 (459)
130 PF01113 DapB_N: Dihydrodipico 22.7 1.9E+02 0.0042 20.1 4.3 38 86-123 1-40 (124)
131 PF13302 Acetyltransf_3: Acety 22.6 2.4E+02 0.0053 18.7 5.3 47 60-110 95-142 (142)
132 TIGR01139 cysK cysteine syntha 22.3 2E+02 0.0043 23.0 4.9 53 43-114 57-109 (298)
133 PF02571 CbiJ: Precorrin-6x re 22.2 1.1E+02 0.0024 24.5 3.3 28 62-90 74-101 (249)
134 TIGR00715 precor6x_red precorr 22.2 1.4E+02 0.0031 23.9 4.0 27 62-89 73-99 (256)
135 PRK14743 thrL thr operon leade 22.1 64 0.0014 17.1 1.3 15 30-44 5-19 (26)
136 COG0057 GapA Glyceraldehyde-3- 22.0 1.3E+02 0.0029 25.6 3.8 33 86-119 2-37 (335)
137 COG1433 Uncharacterized conser 21.7 2.6E+02 0.0056 20.1 4.9 74 28-114 19-92 (121)
138 PRK05898 dnaE DNA polymerase I 21.5 77 0.0017 30.6 2.6 43 70-123 276-318 (971)
139 PF01255 Prenyltransf: Putativ 21.5 1.8E+02 0.0038 22.8 4.3 59 63-121 19-96 (223)
140 PRK08356 hypothetical protein; 21.4 1.6E+02 0.0035 21.9 4.0 35 82-116 2-37 (195)
141 COG3916 LasI N-acyl-L-homoseri 21.3 3.7E+02 0.0079 21.4 6.0 54 61-120 116-169 (209)
142 PF14877 mIF3: Mitochondrial t 21.3 4E+02 0.0086 20.7 6.8 59 64-122 12-80 (181)
143 TIGR01438 TGR thioredoxin and 21.2 1.5E+02 0.0032 25.8 4.1 45 86-130 3-59 (484)
144 PRK14314 glmM phosphoglucosami 21.0 5.3E+02 0.011 22.0 8.7 71 50-121 8-82 (450)
145 PLN00062 TATA-box-binding prot 20.6 3.1E+02 0.0068 20.9 5.4 34 48-83 52-85 (179)
146 PRK06292 dihydrolipoamide dehy 20.5 1E+02 0.0022 26.1 2.9 44 85-129 3-50 (460)
147 PRK14315 glmM phosphoglucosami 20.4 5.4E+02 0.012 21.9 8.2 72 50-122 8-83 (448)
148 PRK14833 undecaprenyl pyrophos 20.3 1.8E+02 0.004 23.2 4.2 60 63-122 29-105 (233)
149 PRK13748 putative mercuric red 20.2 1.3E+02 0.0028 26.2 3.5 45 85-129 98-145 (561)
150 TIGR02382 wecD_rffC TDP-D-fuco 20.1 3.2E+02 0.007 20.0 5.3 44 65-112 140-183 (191)
151 PRK05720 mtnA methylthioribose 20.0 3E+02 0.0065 23.2 5.6 47 70-117 166-215 (344)
152 COG1060 ThiH Thiamine biosynth 20.0 1.3E+02 0.0028 25.7 3.4 52 33-90 60-114 (370)
No 1
>PRK05309 30S ribosomal protein S11; Validated
Probab=100.00 E-value=1.2e-51 Score=301.73 Aligned_cols=117 Identities=70% Similarity=1.125 Sum_probs=114.5
Q ss_pred cceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCC
Q psy8857 17 KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPG 96 (133)
Q Consensus 17 ~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~G 96 (133)
++++..|++||++|+||||||+||++|++++|+|||++||||++|+|||||+++++.+++++.++|++.|+|+|+|+|+|
T Consensus 12 ~~~~~~gi~hI~~t~NNTiitlTd~~G~~~~~~S~G~~gfKg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~G 91 (128)
T PRK05309 12 KKNIPSGVAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSG 91 (128)
T ss_pred ccccceeEEEEEccCCCEEEEEEcCCCCEEEEEecCccEeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCc
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 97 RESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 97 r~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
|+++|++|..+|++|.+|+|+||+|||||||||+|||
T Consensus 92 r~~air~L~~~glkI~~I~D~TpiphNGcR~~K~RRv 128 (128)
T PRK05309 92 RESAIRALQAAGLEVTSIKDVTPIPHNGCRPPKRRRV 128 (128)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCCCCCcCcCCCCCC
Confidence 9999999999999999999999999999999999997
No 2
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-50 Score=295.41 Aligned_cols=121 Identities=72% Similarity=1.150 Sum_probs=117.2
Q ss_pred hccccceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC
Q psy8857 13 RKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG 92 (133)
Q Consensus 13 ~~~~~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG 92 (133)
+++.++++..|+.||++|+||||||+||+.|++++|.|+|.+|||+.+++||||||++++.+++.++|+|++.|||+++|
T Consensus 9 ~~~~~~~i~~GvahI~asfNNTivtitD~~Gn~i~wassG~~gfk~~rk~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkg 88 (129)
T COG0100 9 KKKVKKNIADGVAHIHASFNNTIVTITDLTGNVIIWASSGGMGFKGSRKSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKG 88 (129)
T ss_pred cceeccccccceEEEEcccCCcEEEecCCCCCEEEEEecCCceEcCCCCCCHHHHHHHHHHHHHHHHHhCccEEEEEEEC
Confidence 44557779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
||+|||+++++|+..|++|.+|+|+||||||||||||.||+
T Consensus 89 pG~GreaAiraL~~ag~~i~~I~DvTPiphnG~Rppk~RR~ 129 (129)
T COG0100 89 PGPGREAAIRALAAAGLKITRIEDVTPIPHNGCRPPKRRRV 129 (129)
T ss_pred CCCcHHHHHHHHHHccceEEEEEEcCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999996
No 3
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=100.00 E-value=1.3e-49 Score=291.77 Aligned_cols=114 Identities=49% Similarity=0.756 Sum_probs=111.3
Q ss_pred eeeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC------
Q psy8857 20 ITEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG------ 92 (133)
Q Consensus 20 ~~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG------ 92 (133)
...|++||++|+|||||||||+.|+ +++|+|+|++||+|++|+||||||.|+|+++++|+++|++.|+|+++|
T Consensus 7 ~~~gi~hI~as~NNTivtvTD~~G~~~~~~~S~G~~g~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~ 86 (132)
T PRK09607 7 EKWGIAHIYASFNNTIITITDLTGAETIAKSSGGMVVKADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQ 86 (132)
T ss_pred ceeeEEEEEcccCCeEEEEEcCCCCEEEEEecCcceeeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCC
Confidence 4589999999999999999999996 999999999999999999999999999999999999999999999999
Q ss_pred --CCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 93 --PGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 93 --~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
+|+||+++|++|+++||+|.+|+|+||+|||||||||+||+
T Consensus 87 ~~~G~Gr~~airal~~~glkI~~I~DvTpiPhNGCRp~K~RR~ 129 (132)
T PRK09607 87 KSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGTRPPGGRRG 129 (132)
T ss_pred cCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999986
No 4
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=100.00 E-value=5.6e-50 Score=285.85 Aligned_cols=110 Identities=63% Similarity=1.020 Sum_probs=105.0
Q ss_pred eEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHH
Q psy8857 23 GVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVR 102 (133)
Q Consensus 23 ~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk 102 (133)
|++||++|+|||||||||.+|++++|+|+|++||||++|+|||||++++++++++++++|++.|+|+|+|+|+||+++++
T Consensus 1 giihI~~s~NNt~vtlTd~~G~~~~~~S~G~~gfK~~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk 80 (110)
T PF00411_consen 1 GIIHIKSSFNNTIVTLTDLKGNVLFWSSAGSLGFKGARKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALK 80 (110)
T ss_dssp EEEEEEEESSEEEEEEEETTSEEEEEEETTTSSTTTTCGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHH
T ss_pred CEEEEEecCCCEEEEEECCCCCEEEEEeccccccccccccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCceEEEEEecCCCCCCCCCCCCCCC
Q psy8857 103 ALNNLGIKITQIEDVTPIPHNGCRPSKRRR 132 (133)
Q Consensus 103 ~L~~~gl~I~~I~D~TpiphnGcR~kK~RR 132 (133)
+|.++|++|.+|+|+||+|||||||||+||
T Consensus 81 ~l~~~gl~I~~I~D~T~iphnGcR~kK~RR 110 (110)
T PF00411_consen 81 ALKKSGLKIVSITDVTPIPHNGCRPKKKRR 110 (110)
T ss_dssp HHHHTTSEEEEEEEETT--SSSS--TTTTT
T ss_pred HHHhcCCEEEEEEeecCCCCCCCCCCCCCC
Confidence 999999999999999999999999999998
No 5
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=100.00 E-value=9.4e-49 Score=291.62 Aligned_cols=116 Identities=43% Similarity=0.685 Sum_probs=112.8
Q ss_pred cceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCC-CCCHHHHHHHHHHHHHHHHHcCCcEEEEEE-----
Q psy8857 17 KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR-KSTPFAAQVAAESAGKIAIEHGIKNLEVRI----- 90 (133)
Q Consensus 17 ~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~k-k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~----- 90 (133)
+..+..|++||++|+|||||||||+.|++++|.|+|.+||||.+ |+||||||+|++++++++.++||+.|+|+|
T Consensus 23 ~~~~~~Gi~hI~as~NNTiItiTD~~G~~~~w~SsG~~gfKg~r~KsTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg 102 (149)
T PTZ00129 23 KGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAQDVAARCKELGINALHIKLRATGG 102 (149)
T ss_pred CCceeEEEEEEEcccCCeEEEEEcccCCEEEEEecCcceecccccCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCC
Confidence 35677899999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ---eCCCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCC
Q psy8857 91 ---KGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRR 132 (133)
Q Consensus 91 ---kG~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RR 132 (133)
+|+|+||+++|++|+++||+|.+|+|+||+|||||||||+||
T Consensus 103 ~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhNGcRppk~RR 147 (149)
T PTZ00129 103 VRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDSTRRKGGRR 147 (149)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCCCCCC
Confidence 889999999999999999999999999999999999999998
No 6
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=100.00 E-value=1.2e-48 Score=278.44 Aligned_cols=108 Identities=68% Similarity=1.108 Sum_probs=106.5
Q ss_pred eEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHH
Q psy8857 23 GVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVR 102 (133)
Q Consensus 23 ~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk 102 (133)
|++||++|+||||||+||++|++++|+|+|++||||++|+|||||+.++++++++++++|++.|+|+|+|+|+||+++|+
T Consensus 1 gi~hI~~s~NNT~itlTd~~g~~~~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir 80 (108)
T TIGR03632 1 GVAHIHATFNNTIVTITDPQGNVLSWASAGAVGFKGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIR 80 (108)
T ss_pred CEEEEEccCCCEEEEEEcCCCCEEEEEecCceeeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCceEEEEEecCCCCCCCCCCCCC
Q psy8857 103 ALNNLGIKITQIEDVTPIPHNGCRPSKR 130 (133)
Q Consensus 103 ~L~~~gl~I~~I~D~TpiphnGcR~kK~ 130 (133)
+|.+.|++|.+|+|+||+|||||||||+
T Consensus 81 ~l~~~glkI~~I~D~T~iphNGcR~~K~ 108 (108)
T TIGR03632 81 ALQAAGLEVTSIKDVTPIPHNGCRPPKR 108 (108)
T ss_pred HHHHCCCEEEEEEEcCCCCCCCcCCCCC
Confidence 9999999999999999999999999995
No 7
>CHL00041 rps11 ribosomal protein S11
Probab=100.00 E-value=2.9e-46 Score=269.23 Aligned_cols=110 Identities=56% Similarity=0.980 Sum_probs=107.9
Q ss_pred ccceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC
Q psy8857 16 IKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP 95 (133)
Q Consensus 16 ~~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~ 95 (133)
.++++..|++||++|+|||||||||+.|++++|+|+|++||||++|+|||||++++++++++++++|++.|+|+|+|+|+
T Consensus 7 ~~~~~~~gi~hI~~t~NNTiiTlTd~~G~~l~~~S~G~~gfKg~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~ 86 (116)
T CHL00041 7 SKRKIPKGVIHIQASFNNTIVTVTDVRGRVISWSSAGACGFKGARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGL 86 (116)
T ss_pred ccccceeEEEEEEcccCCEEEEEEcCCCCEEEEEecCceeeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCceEEEEEecCCCCCCCC
Q psy8857 96 GRESSVRALNNLGIKITQIEDVTPIPHNGC 125 (133)
Q Consensus 96 Gr~~~lk~L~~~gl~I~~I~D~TpiphnGc 125 (133)
||++++++|++.|++|.+|+|+||+|||||
T Consensus 87 Gr~~~ir~l~~~glkI~~I~D~TpiphNGC 116 (116)
T CHL00041 87 GRDTALRAIRRSGLKLSSIRDVTPMPHNGC 116 (116)
T ss_pred cHHHHHHHHHHCCCEEEEEEEcCCCCCCCC
Confidence 999999999999999999999999999999
No 8
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=100.00 E-value=4.7e-44 Score=256.79 Aligned_cols=104 Identities=49% Similarity=0.782 Sum_probs=102.2
Q ss_pred eeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC--------
Q psy8857 22 EGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-------- 92 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-------- 92 (133)
.|++||++|+||||||+||..|+ +++|+|+|++||+|++|+||||||.|+|+++++++++|++.|+|+++|
T Consensus 2 ~gi~hI~as~NNTiitvTD~~G~~~~~~~S~G~~g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~ 81 (114)
T TIGR03628 2 WGIAHIYSSFNNTIITITDITGAETIARSSGGMVVKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKS 81 (114)
T ss_pred cEEEEEEccCCCeEEEEEcCCCCEEEEEecCcceEeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCC
Confidence 68999999999999999999995 699999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHNGC 125 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGc 125 (133)
+|+||+++|++|+++||+|.+|+|+||+|||||
T Consensus 82 ~G~Gr~~air~l~~~glkI~~I~DvTpiPhNGC 114 (114)
T TIGR03628 82 PGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT 114 (114)
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEEcCCCCCCCC
Confidence 999999999999999999999999999999999
No 9
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=100.00 E-value=8.9e-43 Score=272.00 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=105.8
Q ss_pred eEEEEEcccCCeEEEEEcCCCCe--EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHH
Q psy8857 23 GVAHIHASFNNTIITITDRKGCT--LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESS 100 (133)
Q Consensus 23 ~il~I~~t~NNTiitlTd~~G~~--l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~ 100 (133)
-.+.|++|+|||||||||..||+ ++|+|||.+||||++|+||||||.|+|+++++|.++|++.|+|.|+|+| |||++
T Consensus 119 f~~vI~aSfNNTIVTlTD~~GNv~tl~WSSAG~~GFKGsKKsTpfAAQ~aae~aakka~~~GIk~V~V~vKGpG-gREtA 197 (233)
T PTZ00090 119 FMLVITTSKNNVHAQVVNKSKNYKTVFGSFAGNVGFRKKLQQSERCAYRIGENIAKKCRRLGIFAVDIKFRRIM-RVETV 197 (233)
T ss_pred EEEEEEeccCcEEEEEEeCCCCEEEEEEEcccccCcccCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCCC-hHHHH
Confidence 34679999999999999999995 9999999999999999999999999999999999999999999999999 79999
Q ss_pred HHHHhhcCceEEEEEecCCCCC---CCCCCCCCCCC
Q psy8857 101 VRALNNLGIKITQIEDVTPIPH---NGCRPSKRRRV 133 (133)
Q Consensus 101 lk~L~~~gl~I~~I~D~Tpiph---nGcR~kK~RRv 133 (133)
|++|+..||+|++|.|+||+|| |||||||+|||
T Consensus 198 LRaL~~~GLkIt~I~DvTpiPHNG~NGCRPpKKRRV 233 (233)
T PTZ00090 198 LQAFYANGLQVTQIIHEPRLPKCGLNAVKPRKRRRV 233 (233)
T ss_pred HHHHHHCCCEEEEEEECCCCCcCCCCCCCCCCCCCC
Confidence 9999999999999999999999 55999999997
No 10
>KOG0408|consensus
Probab=100.00 E-value=1.4e-41 Score=255.88 Aligned_cols=116 Identities=48% Similarity=0.828 Sum_probs=112.3
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCCh
Q psy8857 18 KHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGR 97 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr 97 (133)
.-....++||.+|+|||+||+||..|.++.|+|||.+||+|++|+|++|||.++..++..+.++|+..++|.+||+||||
T Consensus 75 ~f~eiPi~hIraS~NNTivtVtd~kg~vi~~~ScgteGFrntrkgT~iAaQtaavaa~~r~v~~G~~~vrV~VkGlGpGR 154 (190)
T KOG0408|consen 75 NFREIPIIHIRASFNNTIVTVTDVKGEVISWSSCGTEGFRNTRKGTPIAAQTAAVAAIRRAVDQGMQTVRVRVKGLGPGR 154 (190)
T ss_pred cccccceEEEEecCCCeEEEEEccCCcEEEEeecccccccccccCCchhHHHHHHHHHHHHHHhcceEEEEEEecCCccH
Confidence 34446799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 98 ESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 98 ~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
.+++++|...|+.|++|+|.||+|||||||+|.|||
T Consensus 155 msa~kgl~m~Gl~vvsItD~Tp~~~ng~RPrK~Rrl 190 (190)
T KOG0408|consen 155 MSALKGLRMGGLLVVSITDNTPMPHNGCRPRKKRRL 190 (190)
T ss_pred HHHHhhhhhcceEEEEeecCCcCCCCCCCccccccC
Confidence 999999999999999999999999999999999996
No 11
>KOG0407|consensus
Probab=99.95 E-value=2.5e-27 Score=169.32 Aligned_cols=114 Identities=42% Similarity=0.692 Sum_probs=101.7
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCCC-CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC---
Q psy8857 18 KHITEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGSR-KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG--- 92 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~k-k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG--- 92 (133)
-...+++.||++|+|+||+++||+.|. ++...+.|| ..|..+ .++||||+.||++++.+|+++|++.+|+++++
T Consensus 12 ~~~vfgvahi~asfndtfvhitdlsg~eti~rvtggm-kvkadrdesspyaamlaaqdva~kck~~gi~alh~klratgg 90 (139)
T KOG0407|consen 12 GEQVFGVAHIFASFNDTFVHVTDLSGKETIVRVTGGM-KVKADRDESSPYAAMLAAQDVAAKCKELGITALHIKLRATGG 90 (139)
T ss_pred cceeeeEEEEEeecccceEEEeccCCceEEEEecCCe-EEecccccCChHHHHHHHHHHHHHHHhcCeeEEEEEEEecCC
Confidence 467799999999999999999999998 555566665 555554 89999999999999999999999999999985
Q ss_pred -----CCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCC
Q psy8857 93 -----PGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRR 132 (133)
Q Consensus 93 -----~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RR 132 (133)
+|||.+++|++|.++|++|.+|+|+||+|.+-.|.+--||
T Consensus 91 ~ktktpgpgaqsalralar~gmrigriedvtpip~d~trrkggrr 135 (139)
T KOG0407|consen 91 TKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPSDSTRRKGGRR 135 (139)
T ss_pred cccCCCCccHHHHHHHHHHhcceeeeecccccCCccchhhccCcc
Confidence 7899999999999999999999999999999999875544
No 12
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=98.25 E-value=2.1e-05 Score=55.10 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=74.4
Q ss_pred eeeEEEEEcccCCeEEEEEcCC-CCeEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC-CC
Q psy8857 21 TEGVAHIHASFNNTIITITDRK-GCTLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG-PG 96 (133)
Q Consensus 21 ~~~il~I~~t~NNTiitlTd~~-G~~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G-~G 96 (133)
..+.+.|+.|.+|+...+.|.. +.+++..|+-...+++. ......||+.+++.++++|++.|+..+.+-..|+- .|
T Consensus 10 ~~~RL~v~~Sn~~i~aqvi~~~~~~vl~sast~e~~~~~~~~~~~n~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~g 89 (103)
T cd00432 10 ERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHG 89 (103)
T ss_pred CCCEEEEEEeCCEEEEEEEEeCcCeEEEEEecCchhhcccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccccc
Confidence 3578999999999999999998 77999999998888764 46788999999999999999999999888766654 35
Q ss_pred h-HHHHHHHhhcCc
Q psy8857 97 R-ESSVRALNNLGI 109 (133)
Q Consensus 97 r-~~~lk~L~~~gl 109 (133)
| .+++.++.+.|+
T Consensus 90 rv~a~~~~~r~~Gl 103 (103)
T cd00432 90 RVKALAKGAREGGL 103 (103)
T ss_pred HHHHHHHHHHHcCC
Confidence 5 556778877775
No 13
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=97.82 E-value=0.0004 Score=54.22 Aligned_cols=100 Identities=24% Similarity=0.262 Sum_probs=77.1
Q ss_pred eeEEEEEcccCCeEEEEE--cCCCC-eEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC-
Q psy8857 22 EGVAHIHASFNNTIITIT--DRKGC-TLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP- 95 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlT--d~~G~-~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~- 95 (133)
.+.+.|+.|.+|+++.+. |..|. ++++.|+=.+...+- ......||+.++..+++++.+.|++.+.+-.-|+=+
T Consensus 32 kpRLvV~rSNkhIyaQiI~~dd~gd~tLaSAsS~el~~~g~~~~~~N~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh 111 (193)
T PRK08569 32 KPRLVVRKTNKHVIAQIVKYDPKGDRTLASAHSRELAKYGWKGDTGNTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPT 111 (193)
T ss_pred CCEEEEEEeCCeEEEEEEEccCCCCEEEEEEecCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCcccc
Confidence 478999999999999999 55554 888877766555443 256678999999999999999999987777655432
Q ss_pred --Ch-HHHHHHHhhcCceEEEEEecCCCCCCCCCCCCC
Q psy8857 96 --GR-ESSVRALNNLGIKITQIEDVTPIPHNGCRPSKR 130 (133)
Q Consensus 96 --Gr-~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~ 130 (133)
|| .+++++....||+ +||+..|-|--
T Consensus 112 ~gGRV~A~akgArd~GL~---------fPh~~~~~p~~ 140 (193)
T PRK08569 112 KGSRVFAALKGAIDAGLE---------IPHGEEVLPDE 140 (193)
T ss_pred CCccHHHHHHHHHHcCCc---------CCCCCCcCCCc
Confidence 56 5678888889986 58887776643
No 14
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=97.80 E-value=0.00018 Score=51.82 Aligned_cols=94 Identities=23% Similarity=0.185 Sum_probs=74.2
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcCC-CCeEEeeecceeeecCC----CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC
Q psy8857 18 KHITEGVAHIHASFNNTIITITDRK-GCTLSWASSGSVNFKGS----RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG 92 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~~-G~~l~~~S~G~~gfKg~----kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG 92 (133)
-....+.|.|+.|..++.+.+.|.. +.++...|+=...++.. ......||+.+++.+++.|.+.|+..+.+-..|
T Consensus 19 ~~~~~~RL~V~~Snk~i~aQii~~~~~~~l~~aSt~~~~l~~~~~~~~~~n~~aa~~vG~lla~ra~~~gi~~v~fdr~~ 98 (119)
T PF00861_consen 19 GTAERPRLVVFRSNKHIYAQIIDDSKGGTLASASTLSKELKKYGWKGSTKNVEAAYLVGELLAKRALEKGIAKVVFDRGG 98 (119)
T ss_dssp HTTSSEEEEEEEESSEEEEEEEECTTTEEEEEEEEETTTGGGTT-SSTTSSHHHHHHHHHHHHHHHHHTTSSEEEECTST
T ss_pred cCCCCCEEEEEeccCeEEEEEEeeCCCCeEEEEEecchhhhhhhhccCCCCEehHHHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 3444688999999999999998876 66888888777777642 345788999999999999999999988887777
Q ss_pred CCC-Ch-HHHHHHHhhcCceE
Q psy8857 93 PGP-GR-ESSVRALNNLGIKI 111 (133)
Q Consensus 93 ~G~-Gr-~~~lk~L~~~gl~I 111 (133)
+-. || .+++.++.+.||+|
T Consensus 99 ~~y~grv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 99 YKYHGRVKALADGAREGGLEF 119 (119)
T ss_dssp SSSSSHHHHHHHHHHHTTCB-
T ss_pred CcccHHHHHHHHHHHHcCCCC
Confidence 544 45 56788888899875
No 15
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=97.79 E-value=0.0005 Score=49.16 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=69.0
Q ss_pred eeeEEEEEcccCCeEEEEEc-CCCCeEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC-C
Q psy8857 21 TEGVAHIHASFNNTIITITD-RKGCTLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP-G 96 (133)
Q Consensus 21 ~~~il~I~~t~NNTiitlTd-~~G~~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~-G 96 (133)
..+.|.|+.|.+++...+.| .+|.++.+.|+=...+++. ......||+.+++.++++|.+.|++.+..--.|+=+ |
T Consensus 14 ~rpRL~V~rSnkhiyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhG 93 (109)
T CHL00139 14 ERPRLSVFRSNKHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHG 93 (109)
T ss_pred CCCEEEEEEeCCeEEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccch
Confidence 35689999999999998876 4678999988866666553 366778999999999999999999998666434322 4
Q ss_pred h-HHHHHHHhhcCce
Q psy8857 97 R-ESSVRALNNLGIK 110 (133)
Q Consensus 97 r-~~~lk~L~~~gl~ 110 (133)
| ++++.++.+.||+
T Consensus 94 rV~a~a~~are~GL~ 108 (109)
T CHL00139 94 RIKALAEAAREAGLQ 108 (109)
T ss_pred HHHHHHHHHHHhCCC
Confidence 4 5566777778875
No 16
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=97.72 E-value=0.00067 Score=48.92 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=68.0
Q ss_pred eeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC-CCh-
Q psy8857 21 TEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG-PGR- 97 (133)
Q Consensus 21 ~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G-~Gr- 97 (133)
..+.|.|+.|.+++.+.+.|..+. ++++.|+=...|+ ....-.||+.+++.+++++.+.|++.+..--.|+= .||
T Consensus 23 ~rpRL~V~rSnk~iyaQiIdd~~~~tlasaST~ek~~~--~~~n~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv 100 (114)
T TIGR00060 23 NRPRLVVFRSNRHIYAQVIDDSKSEVLASASTLEKKLK--YTGNKDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRV 100 (114)
T ss_pred CCcEEEEEEeCCeEEEEEEECCCCEEEEEEecchhhhc--CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHH
Confidence 367899999999999999988665 7888776444555 56678899999999999999999999866644432 245
Q ss_pred HHHHHHHhhcCce
Q psy8857 98 ESSVRALNNLGIK 110 (133)
Q Consensus 98 ~~~lk~L~~~gl~ 110 (133)
.++..++.+.||+
T Consensus 101 ~A~a~~aRe~Gl~ 113 (114)
T TIGR00060 101 AALAEAAREAGLN 113 (114)
T ss_pred HHHHHHHHHhCCC
Confidence 4456677777875
No 17
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=97.63 E-value=0.00096 Score=48.22 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=68.7
Q ss_pred eeeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCC-CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC-C
Q psy8857 20 ITEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGS-RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP-G 96 (133)
Q Consensus 20 ~~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~-kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~-G 96 (133)
...+.|.|+.|.+++...+.|..+. ++.+.|+=...++.. +...-.||+.+++.++++|.+.|++.+..--.|+=+ |
T Consensus 22 ~~rpRL~V~~SnkhiyAQvidd~~~~tl~saST~e~~~k~~~~~~n~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhG 101 (117)
T PRK05593 22 AERPRLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVRAGLKGGNKEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHG 101 (117)
T ss_pred CCCCEEEEEEeCCeEEEEEEECCCCEEEEEEecCcHhHhccccCCCHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccH
Confidence 3357899999999999999988776 778777755555432 267788999999999999999999997555334322 4
Q ss_pred h-HHHHHHHhhcCce
Q psy8857 97 R-ESSVRALNNLGIK 110 (133)
Q Consensus 97 r-~~~lk~L~~~gl~ 110 (133)
| .+++.++.+.||+
T Consensus 102 rV~a~a~~are~Gl~ 116 (117)
T PRK05593 102 RVKALADAAREAGLK 116 (117)
T ss_pred HHHHHHHHHHHhCCC
Confidence 4 5566777778875
No 18
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.039 Score=40.45 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=67.1
Q ss_pred eeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecC--C--CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC
Q psy8857 21 TEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKG--S--RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP 95 (133)
Q Consensus 21 ~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg--~--kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~ 95 (133)
..+.|.|+-|.+|+++.+.|.... ++...|+=...+++ . -.+...||+.+++.+++++.+.|++.+.+=..|+=+
T Consensus 28 ~rpRL~V~rSnkhi~aQiId~~~~~tla~aSt~~~~l~~~g~~~~~~N~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~y 107 (125)
T COG0256 28 GRPRLVVRRSNRHIYAQIIDDVKGGTLASASTLSKELRKYGKKGGGGNTEAAYLVGKLIAERALAKGIEEVVFDRGGYKY 107 (125)
T ss_pred CCcEEEEEEeCCcEEEEEEEcCCCceEEEEEcchHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCc
Confidence 357788999999999999997765 77777765533321 1 234577999999999999999999999866666654
Q ss_pred -Ch-HHHHHHHhhcCceE
Q psy8857 96 -GR-ESSVRALNNLGIKI 111 (133)
Q Consensus 96 -Gr-~~~lk~L~~~gl~I 111 (133)
|| .++..+..+.||++
T Consensus 108 hgRV~Ala~~AreaGL~f 125 (125)
T COG0256 108 HGRVAALADGAREAGLEF 125 (125)
T ss_pred chHHHHHHHHHHHcCcCC
Confidence 34 44566667778764
No 19
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=96.11 E-value=0.074 Score=42.02 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=63.4
Q ss_pred eeEEEEEcccCCeEEEEEcC-CCCeEEeeecceeeecCC--------------CCCCHHHHHHHHHHHHHHHHHcCCcEE
Q psy8857 22 EGVAHIHASFNNTIITITDR-KGCTLSWASSGSVNFKGS--------------RKSTPFAAQVAAESAGKIAIEHGIKNL 86 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd~-~G~~l~~~S~G~~gfKg~--------------kk~t~~Aa~~aa~~~~~~~~~~gi~~v 86 (133)
.+.+.|+-|.+++...+.|. .|.+++++|+=...+++. ..++-.||..+++.++++|.+.||+.|
T Consensus 105 rPRLsV~RSnkHIYAQIIDD~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~kGI~kV 184 (211)
T PTZ00032 105 RPRLTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSKGISKV 184 (211)
T ss_pred cceEEEEecCCeEEEEEEECCCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHCCCCEE
Confidence 46788999999999999886 567898888755455431 356889999999999999999999986
Q ss_pred EEEEeCCC-CChHHHH-HHHhhcCce
Q psy8857 87 EVRIKGPG-PGRESSV-RALNNLGIK 110 (133)
Q Consensus 87 ~v~~kG~G-~Gr~~~l-k~L~~~gl~ 110 (133)
..==.|+= .||-.++ -+..+.||+
T Consensus 185 vFDRgGy~YHGRVkALAdaARe~GLk 210 (211)
T PTZ00032 185 RFDRAHYKYAGKVEALAEGARAVGLQ 210 (211)
T ss_pred EEeCCCCeehhHHHHHHHHHHHcCCC
Confidence 55423332 2553333 234455664
No 20
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=88.99 E-value=3.2 Score=34.55 Aligned_cols=63 Identities=13% Similarity=-0.013 Sum_probs=44.6
Q ss_pred ceeeeeEEEEEcccCCeEEEEEc--CCCC-eEEeeecce---eeecCCCCCCHHHHHHHHHHHHHHHHHc
Q psy8857 18 KHITEGVAHIHASFNNTIITITD--RKGC-TLSWASSGS---VNFKGSRKSTPFAAQVAAESAGKIAIEH 81 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd--~~G~-~l~~~S~G~---~gfKg~kk~t~~Aa~~aa~~~~~~~~~~ 81 (133)
-+-+.+.+.|..|..|+|+.+.. +.|. +++...+-- .|+++...+.+ ||+.++.-++..+.+.
T Consensus 44 ynspK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~-AAY~TGlL~arR~L~k 112 (300)
T PTZ00069 44 YNSPKYRLVVRITNKDIICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYA-AAYATGLLLARRLLKK 112 (300)
T ss_pred cCCCCceEEEEEECCcEEEEEEEeecCCCEEEEEeehhhHhhcCcCCCCccHH-HHHHHHHHHHHHHHHh
Confidence 34456789999999999988875 5677 455443322 47888777655 7888888788776654
No 21
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=85.77 E-value=2.3 Score=34.48 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=47.1
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 56 FKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 56 fKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
-.|+...|-+....+.+.+++.. +..++...|.+.|||.--..+.+.|.+.|.+|+.|.|.+-
T Consensus 10 s~gR~~aTg~Gv~~~~~~~~~~~-~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G 72 (254)
T cd05313 10 SLIRPEATGYGLVYFVEEMLKDR-NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKG 72 (254)
T ss_pred CCCCCchhHHHHHHHHHHHHHhc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 34555667777766666666554 4556778999999997666777888889999999999553
No 22
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=78.12 E-value=6.4 Score=31.05 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=44.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 57 KGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 57 Kg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
.+....|-|....+.+.+++... ..+...+|.+.|||.=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 4 ~~~~~~Tg~Gv~~~~~~~~~~~~-~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g 65 (227)
T cd01076 4 LGREEATGRGVAYATREALKKLG-IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDG 65 (227)
T ss_pred CCCCccchHHHHHHHHHHHHhcC-CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 34455666766666666665543 457778999999986445566778788999999999753
No 23
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=75.27 E-value=9.4 Score=33.59 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=47.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 57 KGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 57 Kg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
.+....|-|....+++.+++.. ...++...|.+.|+|.=-..+.+.|.+.|-+|+.|.|..-
T Consensus 210 ~~r~eATG~Gv~~~~~~~l~~~-~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G 271 (454)
T PTZ00079 210 NIRPEATGYGLVYFVLEVLKKL-NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDG 271 (454)
T ss_pred CCCCcccHHHHHHHHHHHHHHc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 3455678887777777776654 4456778999999997556666777788999999999873
No 24
>PLN02477 glutamate dehydrogenase
Probab=72.19 E-value=12 Score=32.33 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 58 GSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 58 g~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
+....|-+....+++.+++. ....++...|.+.|||.=-..+.+.|.+.|.+|+.|.|.+
T Consensus 180 ~r~~aTg~Gv~~~~~~~~~~-~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 180 GREAATGRGVVFATEALLAE-HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CCCccchHHHHHHHHHHHHH-cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44456777766666666655 2224567889999999744455588888999999999986
No 25
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=62.65 E-value=12 Score=27.93 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=25.1
Q ss_pred EEEEEeCCCC-ChHHHHHHHhhcCceEEEEEecCC
Q psy8857 86 LEVRIKGPGP-GRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 86 v~v~~kG~G~-Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
|.|-++|||. ||..+-.++.+..++|.-|-|..+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~ 35 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAP 35 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccc
Confidence 5678899996 555443344678899999999874
No 26
>PRK14030 glutamate dehydrogenase; Provisional
Probab=61.51 E-value=25 Score=30.87 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 59 SRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 59 ~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
....|-+....+++.+++.. ...++..+|.+.|||.=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 203 r~~ATg~Gv~~~~~~~~~~~-g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G 262 (445)
T PRK14030 203 RPEATGFGALYFVHQMLETK-GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDG 262 (445)
T ss_pred CCCccHHHHHHHHHHHHHHc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 44567777776766666544 2346678999999996445555777888999999988764
No 27
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=60.92 E-value=22 Score=27.83 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 68 QVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 68 ~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
..+.+.+++... ..+...+|.+.|||.=-..+.+.|.+.|.+++.|.|...
T Consensus 7 ~~~~~~~~~~~~-~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 7 VVAMKAAMKHLG-DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred HHHHHHHHHHcC-CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 333344433332 356678999999997455666888888999999999876
No 28
>PRK09414 glutamate dehydrogenase; Provisional
Probab=59.68 E-value=25 Score=30.84 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 58 GSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 58 g~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
+....|-+....+++.+++.. ...+....|.+.|||.=-..+.+.|...|.+|+.|.|.+
T Consensus 206 gr~~aTg~Gv~~~~~~~~~~~-~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~ 265 (445)
T PRK09414 206 IRTEATGYGLVYFAEEMLKAR-GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSS 265 (445)
T ss_pred CCCCcccHHHHHHHHHHHHhc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 455677777776666666553 345678899999999644556677788899999999954
No 29
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=55.43 E-value=86 Score=25.42 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE---eCCCCChH-----------HH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI---KGPGPGRE-----------SS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr~-----------~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+.+.|.++|++.|.|+. -.|....+ .+ +..+.+.|++|.-|-|...+|-
T Consensus 47 GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~ 123 (250)
T PRK14840 47 GHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQ 123 (250)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCH
Confidence 4667778888899999999999999986 22322211 11 1123457899999999998884
No 30
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=54.30 E-value=35 Score=21.63 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=31.0
Q ss_pred cCCCCeEEeeecceeeecCCCC----CCHHHHHHHHHHHHHHHHHcCCc
Q psy8857 40 DRKGCTLSWASSGSVNFKGSRK----STPFAAQVAAESAGKIAIEHGIK 84 (133)
Q Consensus 40 d~~G~~l~~~S~G~~gfKg~kk----~t~~Aa~~aa~~~~~~~~~~gi~ 84 (133)
|+.|....+.+-|-+|-.|..+ .++.+|..+++++++.-...|+.
T Consensus 24 ~lfg~~~v~~~wGRiG~~Gq~~~~~~~s~~~A~~~~~k~~~~K~~~GY~ 72 (74)
T cd07996 24 DLFGEWSLVRRWGRIGTKGQSRTKTFDSEEEALKAAEKLIREKLKRGYR 72 (74)
T ss_pred cCCCCEEEEEEECCCCCCCceEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4456666677778888666655 46677777777777766667764
No 31
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=52.87 E-value=1e+02 Score=24.81 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEe---CCCCChH-----------HH---HHHHhhcCceEEEEEecCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIK---GPGPGRE-----------SS---VRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~k---G~G~Gr~-----------~~---lk~L~~~gl~I~~I~D~Tpip 121 (133)
....++..+...+.+.|.++||+.|.|+.= .+..-.+ .+ ...+.+.|++|.-|.|...+|
T Consensus 38 ~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~iG~~~~Lp 114 (243)
T PRK14829 38 EGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLW 114 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEechhhCC
Confidence 346677778888999999999999999863 2322211 11 112346789999999999888
No 32
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=52.53 E-value=17 Score=29.03 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
.|-|....+.+.+++......+....+.+.|||.=-..+.+.|.+.|.+|.-|.|.+
T Consensus 9 aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~ 65 (244)
T PF00208_consen 9 ATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSS 65 (244)
T ss_dssp HHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESS
T ss_pred chHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 344444445555554422223567899999998645667788888899999999976
No 33
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.92 E-value=1e+02 Score=24.64 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh-------------HHH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR-------------ESS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr-------------~~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
....++..+...+.+.|.++||+.|.|+. .--+..| +.+ +..+.+.|++|.-|-|.+.+|-
T Consensus 27 ~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~ 104 (233)
T PRK14841 27 KGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPE 104 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCH
Confidence 34667777888899999999999999986 2112223 111 1123467899999999998884
No 34
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=51.77 E-value=48 Score=25.60 Aligned_cols=45 Identities=13% Similarity=-0.000 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEe
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
.+.+++.+.++|+..|++... .....+.+.+.|...|++|..+.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~-~~~~~~~l~~~l~~~gl~v~~~~~ 60 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFP-YDWDAEALKARLAAAGLEQVLFNL 60 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCC-ccCCHHHHHHHHHHcCCeEEEEeC
Confidence 356788899999999999763 233445556667889999998853
No 35
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=51.52 E-value=36 Score=23.42 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=43.7
Q ss_pred EEEcCCCCeEEee---eccee--eecCCC-CCCHHHHHHHHHHHHHHHHHcCCcE-EEEEEeCCCCChHHHHHHHhhcCc
Q psy8857 37 TITDRKGCTLSWA---SSGSV--NFKGSR-KSTPFAAQVAAESAGKIAIEHGIKN-LEVRIKGPGPGRESSVRALNNLGI 109 (133)
Q Consensus 37 tlTd~~G~~l~~~---S~G~~--gfKg~k-k~t~~Aa~~aa~~~~~~~~~~gi~~-v~v~~kG~G~Gr~~~lk~L~~~gl 109 (133)
.|.|++|++++|. ..|.+ ||.=.+ |+.-++.+ ++...++.+.++|+.. .+| -..-+...+.+..-|+
T Consensus 2 CllgpeG~PVSW~lmdqtge~rmgyTlPeyR~~G~~~~-v~~~~~~~L~~~g~P~Y~hv-----~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 2 CLLGPEGNPVSWSLMDQTGEMRMGYTLPEYRGQGLMSQ-VMYHLAQYLHKLGFPFYGHV-----DEDNEASQRLSKSLGF 75 (89)
T ss_pred cccCCCCCEeEEEEecccccccccccCHhHhcCCHHHH-HHHHHHHHHHHCCCCeEeeh-----HhccHHHHHHHHHCCC
Confidence 4789999999996 44444 455443 55556665 4456888999999863 222 2234567777766664
Q ss_pred e
Q psy8857 110 K 110 (133)
Q Consensus 110 ~ 110 (133)
.
T Consensus 76 ~ 76 (89)
T PF08444_consen 76 I 76 (89)
T ss_pred e
Confidence 3
No 36
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=50.15 E-value=1.2e+02 Score=24.54 Aligned_cols=60 Identities=17% Similarity=0.101 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE---eCCCCChHH---H-----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI---KGPGPGRES---S-----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr~~---~-----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
...++......+.+.|.++|++.|.|+. ..|.--.+- . +..+.+.|++|..|-|...+|-
T Consensus 39 GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~~~Lp~ 115 (249)
T PRK14834 39 GHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEA 115 (249)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCH
Confidence 4667777888899999999999999987 223322111 1 1123457899999999998884
No 37
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=49.77 E-value=81 Score=26.38 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeC---CCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIKG---PGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~kG---~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
++..++..+.+.|-+ +.|++-= -+.|+.. .+.|.+.|+..+-|.|..
T Consensus 131 ~v~~~l~~A~~~~k~-~~V~VtESRP~~eG~~~-ak~L~~~gI~~~~I~Dsa 180 (301)
T COG1184 131 TVLEVLKTAADRGKR-FKVIVTESRPRGEGRIM-AKELRQSGIPVTVIVDSA 180 (301)
T ss_pred HHHHHHHHhhhcCCc-eEEEEEcCCCcchHHHH-HHHHHHcCCceEEEechH
Confidence 567788888888877 6666632 2345544 499999999999999853
No 38
>PRK14031 glutamate dehydrogenase; Provisional
Probab=49.05 E-value=50 Score=28.97 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=43.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEe
Q psy8857 57 KGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 57 Kg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
.+....|-+....+.+.+++.. ...++...|.+.|||.=-..+.+.|.+.|-+|+-|.|
T Consensus 201 ~~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 201 LIRPEATGYGNIYFLMEMLKTK-GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCCcccHHHHHHHHHHHHHhc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445667777666666666544 2346778999999997555666778889999999999
No 39
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=48.86 E-value=42 Score=28.28 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
-|.|=..+++.=+...++||+..|+|+==-+....+.++.+|..+||.+.
T Consensus 47 DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi 96 (314)
T PF03198_consen 47 DPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVI 96 (314)
T ss_dssp -GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEE
T ss_pred CcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEE
Confidence 45555556666677899999999999988888899999999999998753
No 40
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=48.36 E-value=53 Score=25.39 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=51.1
Q ss_pred eeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeec--CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCC
Q psy8857 19 HITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFK--GSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPG 96 (133)
Q Consensus 19 ~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfK--g~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~G 96 (133)
....|.|+|.-+.|+-+. . .+|-.||- -+.|.--||-++. ..+.++|+++|++.|-|....-++.
T Consensus 78 ~~ivG~i~lRh~Ln~~ll-----------~-~gGHIGY~VrPseR~KGYA~emL-kl~L~~ar~lgi~~Vlvtcd~dN~A 144 (174)
T COG3981 78 GQIVGFINLRHQLNDFLL-----------E-EGGHIGYSVRPSERRKGYAKEML-KLALEKARELGIKKVLVTCDKDNIA 144 (174)
T ss_pred CcEEEEEEeeeecchHHH-----------h-cCCcccceeChhhhccCHHHHHH-HHHHHHHHHcCCCeEEEEeCCCCch
Confidence 344566666655543321 1 38888884 3335555666644 6688999999999999999887764
Q ss_pred hHHHHHHHhhcCceEEEEEe
Q psy8857 97 RESSVRALNNLGIKITQIED 116 (133)
Q Consensus 97 r~~~lk~L~~~gl~I~~I~D 116 (133)
-..+| +++.|+--..+.|
T Consensus 145 SrkvI--~~NGGile~~~~~ 162 (174)
T COG3981 145 SRKVI--EANGGILENEFFG 162 (174)
T ss_pred hhHHH--HhcCCEEeEEEcc
Confidence 33332 2445554444443
No 41
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=47.35 E-value=1.2e+02 Score=25.67 Aligned_cols=60 Identities=25% Similarity=0.153 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEe-CCCCCh---HH------H----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIK-GPGPGR---ES------S----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~k-G~G~Gr---~~------~----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+++.|.++||+.|.|+-= --+..| |. + ..-|.+.|++|.-|.|.+.+|-
T Consensus 44 GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~ 123 (322)
T PTZ00349 44 GHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYIND 123 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCH
Confidence 45667778888999999999999999861 112122 11 0 1234567899999999999884
No 42
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=47.17 E-value=1e+02 Score=24.95 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHH-----H-----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRES-----S-----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~-----~-----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
....++..+...+.+.|.++||+.|.|+.=. -+..|.. . +..+.+.|++|.-|.|.+.+|-
T Consensus 44 ~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~iG~~~~Lp~ 121 (249)
T PRK14831 44 MGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDLDPLPK 121 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEechhhCCH
Confidence 3466777777888999999999999998733 1223321 1 1123467899999999998884
No 43
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=45.88 E-value=1.8e+02 Score=24.40 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=57.0
Q ss_pred cCCCCe-EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 40 DRKGCT-LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 40 d~~G~~-l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
|+..++ +.+.+..+.-+-+..--.+.++..+.+..++++++.|+-.|-|.=.. +|..-..+.++ .+.|+-=....+.
T Consensus 62 ~~~~~~~v~~~~~a~a~~Dg~~g~G~~~~~~am~~aiekAr~~Gi~~v~vrns~H~G~~g~y~~~a-a~~G~igi~~tn~ 140 (332)
T PRK13260 62 IPDAQPQRVTSLGAIEQWDAQRAIGNLTAKKMMDRAIELARDHGIGLVALRNANHWMRGGSYGWQA-AEKGYIGICWTNS 140 (332)
T ss_pred CCCCCeEEEecCCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEcCCCchhhHHHHHHHH-HHCCCEEEEEeCC
Confidence 344443 33344455556777777899999999999999999999877665432 44444444443 4567755555665
Q ss_pred CC--CCCCCCCC
Q psy8857 118 TP--IPHNGCRP 127 (133)
Q Consensus 118 Tp--iphnGcR~ 127 (133)
.| .||+|-+|
T Consensus 141 ~~~vaP~Gg~~~ 152 (332)
T PRK13260 141 IAVMPPWGAKEC 152 (332)
T ss_pred CCeeCCCCCCCC
Confidence 55 48888664
No 44
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=45.41 E-value=2e+02 Score=24.79 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCcEEEEEEeCCCCChHHHHHHHhhc------CceEEEEEecCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIE--HGIKNLEVRIKGPGPGRESSVRALNNL------GIKITQIEDVTPIP 121 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~--~gi~~v~v~~kG~G~Gr~~~lk~L~~~------gl~I~~I~D~Tpip 121 (133)
.++.+-..+++.+.+.+.+ .|++.=+|.+.|...|--..=.+|+++ |++-..|.|.|+-.
T Consensus 189 ~s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsfss 256 (365)
T PF05677_consen 189 PSRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSFSS 256 (365)
T ss_pred CCHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCcch
Confidence 3567777778888999885 789999999999888865544466543 66777899998743
No 45
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.32 E-value=31 Score=28.28 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEE
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRI 90 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~ 90 (133)
+=|||++ +++++.+-|++.|+.++++.=
T Consensus 74 THPyAa~-iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 74 THPYAAR-ISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred CChHHHH-HHHHHHHHHHHhCCcEEEEEC
Confidence 4599998 668899999999999887654
No 46
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.11 E-value=57 Score=26.04 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCChH-----HHH-----------HHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGRE-----SSV-----------RALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr~-----~~l-----------k~L~~~gl~I~~I~D~Tpiph 122 (133)
...++......+.+.|.++||+.|.|+. .--+..|. ..+ ..+...|++|.-|-|...+|-
T Consensus 18 GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~Lp~ 94 (229)
T PRK10240 18 GHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNS 94 (229)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCH
Confidence 3556777778899999999999999986 21122231 111 123456899999999999884
No 47
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.23 E-value=1.7e+02 Score=23.69 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEe---CCCCChH---HHH-----------HHHhhcCceEEEEEecCCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIK---GPGPGRE---SSV-----------RALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~k---G~G~Gr~---~~l-----------k~L~~~gl~I~~I~D~Tpiph 122 (133)
....++......+.+.|.++|++.|.|+.= .+..-.+ ..+ ..+...|++|.-|-|.+.+|-
T Consensus 46 ~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~viG~~~~Lp~ 123 (251)
T PRK14830 46 AGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPE 123 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcChhhCCH
Confidence 346677778888999999999999999872 2322211 122 122347899999999998873
No 48
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.40 E-value=1.6e+02 Score=23.53 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh--H---HHH-----------HHHhhcCceEEEEEecCCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR--E---SSV-----------RALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr--~---~~l-----------k~L~~~gl~I~~I~D~Tpiph 122 (133)
....++..+...+.+.|.++||+.|.|+- .--+..| + ..+ ..|.+.|++|.-|-|.+.+|-
T Consensus 30 ~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~ 107 (230)
T PRK14837 30 EGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSE 107 (230)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCH
Confidence 34667777888899999999999999986 2112223 1 111 123456899999999999884
No 49
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.20 E-value=1.9e+02 Score=23.52 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE---eCCCCCh-HH--H-----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI---KGPGPGR-ES--S-----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr-~~--~-----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+.+.|.++||+.|.|+. ..|..-. |. . +..+.+.|++|.-|-|...+|-
T Consensus 43 GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iGd~~~Lp~ 119 (253)
T PRK14832 43 GHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPK 119 (253)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCchhCCH
Confidence 4556677778889999999999999986 2232111 11 1 1123456899999999998884
No 50
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=42.08 E-value=34 Score=28.85 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=25.7
Q ss_pred EEEEEeCCCCChHHHHHHH-hhcCceEEEEEecCC
Q psy8857 86 LEVRIKGPGPGRESSVRAL-NNLGIKITQIEDVTP 119 (133)
Q Consensus 86 v~v~~kG~G~Gr~~~lk~L-~~~gl~I~~I~D~Tp 119 (133)
+.|-++|||.=-..++|++ ...+++|+-|-|.+.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~ 37 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLD 37 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 5788999996335566765 456899999999775
No 51
>KOG1602|consensus
Probab=41.26 E-value=73 Score=26.30 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=51.3
Q ss_pred CCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEE---eCCCCChHH-----------HHHH---
Q psy8857 41 RKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRI---KGPGPGRES-----------SVRA--- 103 (133)
Q Consensus 41 ~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr~~-----------~lk~--- 103 (133)
.+||--....+|... ...-.|+..+-..+++.|.++|++.|.++- ..|....+- +-+.
T Consensus 44 MDGNRR~AKk~~L~~-----~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~ 118 (271)
T KOG1602|consen 44 MDGNRRYAKKRGLET-----SEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQ 118 (271)
T ss_pred ecCchHHHHhcCCCc-----ccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356655555666644 334568888888999999999999998875 234433321 1111
Q ss_pred ---HhhcCceEEEEEecCCCC
Q psy8857 104 ---LNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 104 ---L~~~gl~I~~I~D~Tpip 121 (133)
+.+.|+.|.-|.|.+.+|
T Consensus 119 ~~~~~~~gvririiGdlslL~ 139 (271)
T KOG1602|consen 119 GEKLDKYGVRIRVIGDLSLLP 139 (271)
T ss_pred hhhhhhcCeEEEEEcchhhCC
Confidence 124788999999999887
No 52
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.00 E-value=1.4e+02 Score=24.14 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE---eCCCCChHH---HHH-----------HHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI---KGPGPGRES---SVR-----------ALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr~~---~lk-----------~L~~~gl~I~~I~D~Tpiph 122 (133)
...++......+.+.|.++|++.|.|+. ..|.--.+- .+. -+.+.|++|.-|-|.+++|-
T Consensus 39 GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~viG~~~~Lp~ 115 (253)
T PRK14836 39 GHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSRLSP 115 (253)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeccccCCH
Confidence 4566777788899999999999999886 222222111 111 12357899999999999884
No 53
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.52 E-value=98 Score=25.77 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEeC---CCCCh-----------HHH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIKG---PGPGR-----------ESS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG---~G~Gr-----------~~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+.+.|.++||+.|.|+-=. +.-.. +.+ ...|.+.|++|.-|-|...+|-
T Consensus 92 GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~iG~~~~Lp~ 168 (296)
T PRK14827 92 GHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWR 168 (296)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEechhhCCH
Confidence 355667777888899999999999998632 22111 111 1123567899999999998884
No 54
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=39.41 E-value=78 Score=25.08 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh---HH--HHH-----------HHhhcCceEEEEEecCCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR---ES--SVR-----------ALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr---~~--~lk-----------~L~~~gl~I~~I~D~Tpiph 122 (133)
....++......+.+.|.++||+.|.|+. .--+..| |. .+. .+...|++|.-|-|.+.+|-
T Consensus 24 ~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~~~Lp~ 101 (221)
T cd00475 24 EGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDLSLLPE 101 (221)
T ss_pred HhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCH
Confidence 34667777888899999999999999985 2222233 11 111 12346889999999999884
No 55
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.53 E-value=93 Score=24.17 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCC---------CCC-hHHHHHHHhhcCceEEEEE
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGP---------GPG-RESSVRALNNLGIKITQIE 115 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~---------G~G-r~~~lk~L~~~gl~I~~I~ 115 (133)
.+..++.+.++|+..|++.+... ... .+.+.+.|...|+.|.++.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~ 72 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMC 72 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEe
Confidence 46788899999999999986532 112 2334455688999999874
No 56
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=38.47 E-value=1.2e+02 Score=25.95 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe---CCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIK---GPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~k---G~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
++..++..+.+.|. .++|++- -...|+...-..|.+.|+.++.|.|..
T Consensus 179 Tal~vi~~A~~~gk-~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa 229 (356)
T PRK08334 179 TVGAVLRVMHKDGT-LKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNM 229 (356)
T ss_pred hHHHHHHHHHHcCC-eEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhH
Confidence 66778888888884 5666663 345565555567889999999999963
No 57
>PRK09989 hypothetical protein; Provisional
Probab=38.43 E-value=95 Score=24.12 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+.++|+..|++..- .+...+-+-+.|...|+.+..+.
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~-~~~~~~~~~~~l~~~Gl~v~~~~ 60 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFP-YDYSTLQIQKQLEQNHLTLALFN 60 (258)
T ss_pred HHHHHHHHHcCCCEEEECCc-ccCCHHHHHHHHHHcCCcEEEec
Confidence 45778899999999998541 23344555666788999998774
No 58
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=37.79 E-value=1.1e+02 Score=24.36 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLG 108 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~g 108 (133)
...|.|++..+..+....++..-..+.|.|=| .|.|+-+++.+|....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 7 QFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred ccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45788999998888888887777788888877 6899999999996543
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=37.72 E-value=75 Score=24.95 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCC---------CCh-HHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPG---------PGR-ESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G---------~Gr-~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.+.|+..|+|-+.+.. +.. +.+.+.|.+.|+.|.++.
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 72 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMC 72 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeee
Confidence 56788899999999999775532 112 234445688999999884
No 60
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=37.67 E-value=2e+02 Score=24.66 Aligned_cols=61 Identities=5% Similarity=0.103 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEecCCCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPG---RESSVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
.-||+-+..++..++..+.+.+-..|.|=--.--.+ ..+++.+|...|++|..+ +.+|.|-
T Consensus 13 ~lt~~~v~~l~~a~~~~l~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~l-g~~pTP~ 76 (445)
T PRK09542 13 QIDEDLVRDVGAAFARLMRAEGATTVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRI-GLASTDQ 76 (445)
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEe-CCCCCHH
Confidence 468999999998888888765434443333322223 356777888899999988 6888774
No 61
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.58 E-value=39 Score=24.92 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEeCCCCChHH------HHHHHhhcCceEEEEEecCCCCC
Q psy8857 69 VAAESAGKIAIEHGIKNLEVRIKGPGPGRES------SVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 69 ~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~------~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
....++.+...+.|++.|.|.++|-|.-|.. .++-+.+.|-.-..|...+-||.
T Consensus 64 k~skkvlkaleq~gI~vIPvk~KgrGrprkyd~~t~~~i~emlr~gk~preIsk~lGIpi 123 (139)
T COG1710 64 KVSKKVLKALEQMGIKVIPVKLKGRGRPRKYDRNTLLRIREMLRNGKTPREISKDLGIPI 123 (139)
T ss_pred HHHHHHHHHHHhCCceEeeeeecCCCCCcccchhHHHHHHHHHHcCCCHHHHHHhhCCch
Confidence 5667888888999999999999997755533 45555666765555555555553
No 62
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=36.74 E-value=46 Score=28.23 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=25.7
Q ss_pred EEEEEeCCCCChHHHHHHH-hhcCceEEEEEecCC
Q psy8857 86 LEVRIKGPGPGRESSVRAL-NNLGIKITQIEDVTP 119 (133)
Q Consensus 86 v~v~~kG~G~Gr~~~lk~L-~~~gl~I~~I~D~Tp 119 (133)
+.|-++|||.--..++|++ ...+++|.-|-|.++
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~~ 37 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINASYP 37 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 5788999997445566765 456799999999765
No 63
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=36.56 E-value=2e+02 Score=22.18 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=34.2
Q ss_pred HHHHHHHcCCcEEEEEEe-CCCCCh----------HHHHHHHhhcCceEEEEEecCCCCC--CCCCCCCC
Q psy8857 74 AGKIAIEHGIKNLEVRIK-GPGPGR----------ESSVRALNNLGIKITQIEDVTPIPH--NGCRPSKR 130 (133)
Q Consensus 74 ~~~~~~~~gi~~v~v~~k-G~G~Gr----------~~~lk~L~~~gl~I~~I~D~Tpiph--nGcR~kK~ 130 (133)
+....++.|+.-|.+.=. |.|.|- +..+..|...|.+|..|.=---.|- ..||+||.
T Consensus 39 al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~ 108 (181)
T COG0241 39 ALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKP 108 (181)
T ss_pred HHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCCh
Confidence 344566788887666653 343331 1244556778887776665444444 58888874
No 64
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.55 E-value=2.2e+02 Score=23.42 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCChHH----HH-----H---------HHhhcCceEEEEEecCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGRES----SV-----R---------ALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr~~----~l-----k---------~L~~~gl~I~~I~D~Tpiph 122 (133)
..++......+.+.|.++|++.|.|+. .--+..|.. .| + .+...|++|.-|-|...+|-
T Consensus 67 H~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~irir~iGd~~~Lp~ 144 (275)
T PRK14835 67 HEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARRMAVDPRIHANRVRVRAIGRHDGFPP 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHhchhhhhhCCeEEEEecChhhCCH
Confidence 456777778889999999999999975 222222311 11 1 12245788999999988874
No 65
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=36.52 E-value=1.2e+02 Score=24.11 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh---H--HHHH-----------HHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR---E--SSVR-----------ALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr---~--~~lk-----------~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+.+.|.++||+.|.|+. .--+..| | ..+. -|.+.|++|.-|-|.+.+|-
T Consensus 24 GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~ 100 (226)
T TIGR00055 24 GHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSK 100 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCH
Confidence 4567777888899999999999999986 2112223 1 1111 23357899999999999884
No 66
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.35 E-value=2.3e+02 Score=22.87 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCCh---H--HHH-----------HHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGR---E--SSV-----------RALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr---~--~~l-----------k~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+.+.|.++||+.|.|+.=. -+..| | .++ ..+.+.|++|.-|-|.+.+|-
T Consensus 34 GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~ 110 (239)
T PRK14839 34 GHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPD 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCH
Confidence 466777788889999999999999998621 12223 1 111 123356899999999998884
No 67
>PRK07757 acetyltransferase; Provisional
Probab=36.11 E-value=91 Score=21.63 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCC
Q psy8857 65 FAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRP 127 (133)
Q Consensus 65 ~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~ 127 (133)
++.. +...+.+.+.+.|+..+.+... ..+...+.|+....-.|..+--+|+|+.
T Consensus 82 lg~~-Ll~~l~~~a~~~g~~~i~~~~~--------~~~~Y~k~GF~~~~~~~~~~~~~~~~~~ 135 (152)
T PRK07757 82 IGRM-LVEACLEEARELGVKRVFALTY--------QPEFFEKLGFREVDKEALPQKVWADCIK 135 (152)
T ss_pred HHHH-HHHHHHHHHHhCCCCeEEEEeC--------cHHHHHHCCCEEcccccCChhHHhcCcc
Confidence 4444 3355667788889988765442 1244578899888888888888888874
No 68
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=35.54 E-value=1.5e+02 Score=20.43 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHH-HHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 66 AAQVAAESAGKIA-IEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 66 Aa~~aa~~~~~~~-~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
.+..+...+.+.+ .++|+..|.+.+-.. -..+++.+.+.|+++...
T Consensus 93 ig~~l~~~l~~~af~~~~~~~i~~~v~~~---N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 93 IGRKLLDELIEYAFKELGIHKIYLEVFSS---NEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp HHHHHHHHHHHHH-HHTT-CEEEEEEETT----HHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHhhhccCeEEEEEEEecC---CHHHHHHHHhCCCEEEEE
Confidence 4555667788899 999999999988654 457778888889875543
No 69
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.44 E-value=2.4e+02 Score=22.74 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEe-CCCCChH-------------HH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIK-GPGPGRE-------------SS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~k-G~G~Gr~-------------~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
...++......+.+.|.++|++.|.|+.= --+..|. .+ +.-+.+.|++|.-|-|.+.+|-
T Consensus 33 GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~Lp~ 109 (241)
T PRK14842 33 GHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTR 109 (241)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCH
Confidence 45677777788899999999999999862 1122231 11 1112356899999999998884
No 70
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=35.26 E-value=78 Score=24.11 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCCCCChHH--HHHHHhhcCceEEEEE
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGPGPGRES--SVRALNNLGIKITQIE 115 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~G~Gr~~--~lk~L~~~gl~I~~I~ 115 (133)
.+.+.+.++.+|++.|-|-|= .|.-+|+ +-+.|...||.+.|+.
T Consensus 43 veEiieFak~mgykkiGiAfC-iGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFC-IGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhh-HhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888999999999988774 4655655 5567788999998874
No 71
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=35.05 E-value=2.3e+02 Score=24.43 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCC----cEEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEecCCCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGI----KNLEVRIKGPGPG---RESSVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi----~~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
-+++.+..+++.++..+.+.+. ..|.|=--+--.+ .+++..+|...|++|..+.+.+|.|.
T Consensus 20 l~~~~~~~l~~a~~~~l~~~~~~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi~V~~~g~~~ptP~ 87 (487)
T cd05799 20 MNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLFDDLRPTPL 87 (487)
T ss_pred ccHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCCCcH
Confidence 5788888888888888875442 2333322222223 35677788889999999998888883
No 72
>PRK07564 phosphoglucomutase; Validated
Probab=34.84 E-value=2.2e+02 Score=25.22 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=45.5
Q ss_pred ceeeecC---CCCCCHHHHHHHHHHHHHHHHHcCCc-EEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEe--cCCCC
Q psy8857 52 GSVNFKG---SRKSTPFAAQVAAESAGKIAIEHGIK-NLEVRIKGPGPG---RESSVRALNNLGIKITQIED--VTPIP 121 (133)
Q Consensus 52 G~~gfKg---~kk~t~~Aa~~aa~~~~~~~~~~gi~-~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D--~Tpip 121 (133)
|+-|++| ...-|++-++.+++.+++.+.+.+.. .|.|=.-+--.+ .+++..+|...|++|..+.| .+|.|
T Consensus 41 GT~GiRg~~~~~~lt~~~v~~i~~a~a~~~~~~~~~~~VvVG~D~R~~S~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP 119 (543)
T PRK07564 41 GTSGHRGSSLQPSFNENHILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAANGVGVVIVGRGGYTPTP 119 (543)
T ss_pred cccccccccCCCCcCHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCch
Confidence 3445555 44578999999999888888765432 243333332223 35678888899999999866 45555
No 73
>PRK01060 endonuclease IV; Provisional
Probab=33.93 E-value=1.1e+02 Score=23.95 Aligned_cols=52 Identities=25% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCC---h------HHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPG---R------ESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~G---r------~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
+.+++.+.++|+..|+|.+.++..- . +.+-+.+...|+.+..+.=-.|.+.|
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~n 75 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLIN 75 (281)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEec
Confidence 5678899999999999998755321 1 22334557789986544433444333
No 74
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=33.89 E-value=1.3e+02 Score=23.78 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPS 128 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k 128 (133)
++.+......+.+.+...|+..+-....- .+.+.|.+.|+.+..|-+ |..|+|.|.+
T Consensus 154 ~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~------~l~r~l~r~G~~~~~lG~--~~~~~G~r~p 210 (241)
T TIGR03694 154 PHIPLGLYLGLIALSSANGITHWYAIMEP------RLARLLSRFGIQFRQVGP--PVDYHGLRAP 210 (241)
T ss_pred chHHHHHHHHHHHHHHHCCCcEEEEEeCH------HHHHHHHHhCCceEEcCC--CeeECcEecc
Confidence 55666667788999999999998777652 467788889999988886 5567777643
No 75
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=33.75 E-value=2.1e+02 Score=24.73 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=41.4
Q ss_pred eeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCC-------CCCHHHHHHHHHHHHHHH----HHcCCcEEEE
Q psy8857 20 ITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR-------KSTPFAAQVAAESAGKIA----IEHGIKNLEV 88 (133)
Q Consensus 20 ~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~k-------k~t~~Aa~~aa~~~~~~~----~~~gi~~v~v 88 (133)
+..++ |.+.+-=|.+|+...+|+..|+..-|----.|-- .-|.. +...|+.+++++ --+|+..|++
T Consensus 193 IVE~f--v~fd~EiTlLtvr~~~~~~~Fc~PIGHrq~dgdY~ESWQP~~mS~~-al~~A~~IA~~vt~aLGG~GiFGVEl 269 (394)
T COG0027 193 IVEEF--VKFDFEITLLTVRAVDGTGSFCAPIGHRQEDGDYRESWQPQEMSEA-ALEEAQSIAKRVTDALGGRGLFGVEL 269 (394)
T ss_pred EEEEE--ecceEEEEEEEEEEecCCCCcCCCcccccCCCChhcccCccccCHH-HHHHHHHHHHHHHHhhcCccceeEEE
Confidence 44444 4555667888888888876666666653323321 22332 333334444444 4478999999
Q ss_pred EEeC
Q psy8857 89 RIKG 92 (133)
Q Consensus 89 ~~kG 92 (133)
.++|
T Consensus 270 fv~g 273 (394)
T COG0027 270 FVKG 273 (394)
T ss_pred EEeC
Confidence 9987
No 76
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=33.20 E-value=3e+02 Score=23.29 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=52.2
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEecCC--CCCCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDVTP--IPHNGCR 126 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tp--iphnGcR 126 (133)
+....-+-+..--.+.++..+.+.+++++++.|+-.|-|.=.. +|..-..+.++.. .|+--....+..| .||+|-+
T Consensus 73 ~~a~a~vDg~~g~G~~a~~~Am~~aiekAr~~Gi~~v~v~ns~H~G~~g~Y~~~aa~-~G~Igi~~tNs~~~vaP~GG~~ 151 (349)
T TIGR03175 73 GPCTAIFHGDNGAGQVAAKMAMEHAIEIAKKSGVAVVGISRMSHSGALSYFVRQAAE-QGMVALSMCQSDPMVVPFGGTD 151 (349)
T ss_pred cCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEecCCCccccHHHHHHHHHH-CCCEEEEEeCCCCeeCCCCCCC
Confidence 3344446666667899999999999999999999877665432 4544444544444 5775445555555 4888866
Q ss_pred C
Q psy8857 127 P 127 (133)
Q Consensus 127 ~ 127 (133)
|
T Consensus 152 ~ 152 (349)
T TIGR03175 152 I 152 (349)
T ss_pred C
Confidence 5
No 77
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=32.71 E-value=2.9e+02 Score=23.58 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=45.4
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCCh---HHHHHHHhhcCceEEEEEecCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGR---ESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr---~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
+.|.-|.-|...-||+-+..++..++..+.+.+-..|.|=--.--.++ .++..+|...|++|..+ ..+|.|
T Consensus 6 t~GiRG~~~~~~ltpe~~~~lg~a~a~~l~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~Gv~V~~~-g~~pTP 79 (443)
T PRK10887 6 TDGIRGKVGQAPITPDFVLKLGWAAGKVLARQGRPKVLIGKDTRISGYMLESALEAGLAAAGVDVLLT-GPMPTP 79 (443)
T ss_pred CCccceecCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEE-CCcChH
Confidence 344444444435799988888888888776544333443333322333 46777888899999888 577766
No 78
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=32.42 E-value=3e+02 Score=23.05 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=53.4
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEE-eC-CCCChHHHHHHHhhcCceEEEEEecCC--CCCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRI-KG-PGPGRESSVRALNNLGIKITQIEDVTP--IPHNGC 125 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tp--iphnGc 125 (133)
+....-+-+..--.+.++..+.+..++++++.|+-.|.|.= .. +|..-..+.++ .+.|+--....+..| .||+|-
T Consensus 62 ~~a~a~vDg~~g~G~~~~~~am~~aiekAr~~Gi~~v~vrn~S~H~G~~g~y~~~a-a~~Gligi~~tN~~~~vaP~GG~ 140 (330)
T PLN00105 62 TKTSAAVDGNKNAGMLVLHHAMDMAIDKAKTHGVGIVGTCNTSTSTGALGYYAEKV-AQQGLIGLVFANSPEFVAPAGGI 140 (330)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHHHHhCEEEEEEeCCcCCccchHHHHHHH-HHCCCeEEEEeCCCCeeCCCCCC
Confidence 34444566777778899999999999999999998877765 22 55544444444 456876555566555 488886
Q ss_pred CC
Q psy8857 126 RP 127 (133)
Q Consensus 126 R~ 127 (133)
+|
T Consensus 141 ~~ 142 (330)
T PLN00105 141 EP 142 (330)
T ss_pred CC
Confidence 54
No 79
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.12 E-value=98 Score=23.63 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHH-HHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 66 AAQVAAESAGKIA-IEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 66 Aa~~aa~~~~~~~-~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
....+.+.+++.. ....+..-.+-+-|+|.=-..+.+.|.+.|.+|. +.|..+
T Consensus 8 Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~~ 61 (200)
T cd01075 8 GVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADINE 61 (200)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence 3334444444443 1223455678889988534556677878899988 778654
No 80
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.01 E-value=95 Score=26.84 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=36.5
Q ss_pred eEEeeeccee-eecCCCCCCHHHHHHHHHHHHHHHH-HcCCcEEEEEEeCCC
Q psy8857 45 TLSWASSGSV-NFKGSRKSTPFAAQVAAESAGKIAI-EHGIKNLEVRIKGPG 94 (133)
Q Consensus 45 ~l~~~S~G~~-gfKg~kk~t~~Aa~~aa~~~~~~~~-~~gi~~v~v~~kG~G 94 (133)
++.|.|.|++ ||---|.++.|+.-.. +++++.+. +.+.+.|+|.-...|
T Consensus 151 vFSWPS~g~l~~Yn~DreS~~~Sr~aL-e~~lr~La~~~~~~~I~ilAHSMG 201 (377)
T COG4782 151 VFSWPSRGSLLGYNYDRESTNYSRPAL-ERLLRYLATDKPVKRIYLLAHSMG 201 (377)
T ss_pred EEEcCCCCeeeecccchhhhhhhHHHH-HHHHHHHHhCCCCceEEEEEecch
Confidence 5678888884 8887788888777655 55666555 556899999988776
No 81
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=31.76 E-value=1.2e+02 Score=26.43 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
..|-|-.....+.+. +....+++...|-+.|+|.=-..+.+-|...|-+|+.+.|..-.=|
T Consensus 184 ~aTg~Gv~~~~~~a~-~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~ 244 (411)
T COG0334 184 EATGYGVFYAIREAL-KALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIY 244 (411)
T ss_pred cccceehHHHHHHHH-HHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCcee
Confidence 455555555555333 3333447889999999996444555566556999999999877433
No 82
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.67 E-value=1.1e+02 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCC-------CCh---HHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPG-------PGR---ESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G-------~Gr---~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+++.|+..|++.+.+++ ... +.+-+.+...|+.|.++.
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~ 77 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMC 77 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEe
Confidence 56778889999999999876532 122 223445578899998875
No 83
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=31.62 E-value=3.6e+02 Score=23.70 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=47.3
Q ss_pred EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC-cEEEEEEeCC---CCChHHHHHHHhhcCceEEEEEe--cCC
Q psy8857 46 LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGI-KNLEVRIKGP---GPGRESSVRALNNLGIKITQIED--VTP 119 (133)
Q Consensus 46 l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi-~~v~v~~kG~---G~Gr~~~lk~L~~~gl~I~~I~D--~Tp 119 (133)
+.+-++|.=|.-+...-|++-++++++.+++.+.+.+. ..|.|=.-+- ++-.+.++.+|...|++|....| .+|
T Consensus 21 ~~FGT~GiRG~~g~~~lt~~~v~~i~~a~~~~l~~~~~~~~VvVg~D~R~~S~~~~~~~~~gL~s~Gi~V~~~~~~g~~p 100 (522)
T cd05801 21 VAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVIIQQNDGYTP 100 (522)
T ss_pred eeEEcccccCccCCCchhHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence 34444554443334457999999999988988876553 2244333321 22234556788889999998766 455
Q ss_pred CC
Q psy8857 120 IP 121 (133)
Q Consensus 120 ip 121 (133)
.|
T Consensus 101 TP 102 (522)
T cd05801 101 TP 102 (522)
T ss_pred ch
Confidence 55
No 84
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.43 E-value=1.4e+02 Score=23.21 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
+..++.+.+.|+..|++.. -+...-+.+.+.|...||++...
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~-~~~~~~~~~~~~l~~~gl~~~~~ 59 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMF-PYDYDIEELKQVLASNKLEHTLH 59 (258)
T ss_pred HHHHHHHHHhCCCEEEEcC-CCCCCHHHHHHHHHHcCCcEEEE
Confidence 5578899999999999954 23334455666778899998763
No 85
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=30.44 E-value=1.4e+02 Score=25.91 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEec
Q psy8857 68 QVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 68 ~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
..+|+-+.+.+++++++ +.|+++=-|.+-+...+.|...|++|....|.
T Consensus 361 d~iA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l 409 (422)
T PLN00124 361 DVIASGIVNAAKQVGLK-VPLVVRLEGTNVDQGKRILKESGMTLITAEDL 409 (422)
T ss_pred HHHHHHHHHHHHhcCCC-CcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCH
Confidence 34556666677777765 56666767778889999999999887766554
No 86
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.06 E-value=1.5e+02 Score=23.94 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCChHH-----HH----HHH----hhcCceEEEEEecCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGRES-----SV----RAL----NNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr~~-----~l----k~L----~~~gl~I~~I~D~Tpiph 122 (133)
..++..+...+.+.|.++|++.|.|+. .--+..|.. .+ ..| ...+++|.-|-|.+.+|-
T Consensus 53 H~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~irv~~iG~~~~lp~ 125 (256)
T PRK14828 53 HRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPDGRWRVRHVGSLDLLPA 125 (256)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHHHHHhCCeEEEEECChhhCCH
Confidence 446777778889999999999999965 222323321 11 111 245778999999888874
No 87
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=28.98 E-value=1.6e+02 Score=24.09 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe---CCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIK---GPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~k---G~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
++..++..+.+.|.. ++|++- -...|+.. .+.|.+.|+.++.|.|..
T Consensus 121 tv~~~l~~A~~~gk~-~~V~v~EsrP~~qG~~l-a~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 121 AVLEILKTAKRKGKR-FKVILTESAPDYEGLAL-ANELEFLGIEFEVITDAQ 170 (275)
T ss_pred HHHHHHHHHHHcCCc-eEEEEecCCCchhHHHH-HHHHHHCCCCEEEEeccH
Confidence 556677777777743 555553 34567776 788999999999999863
No 88
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=28.89 E-value=49 Score=32.33 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|.. ....|+|+-|++||
T Consensus 340 VGPGRGSaAGSLVa---Y~LgIT~VDPl~y~ 367 (1107)
T PRK06920 340 TGPGRGSAAGSLVS---YVLEITDIDPIEYD 367 (1107)
T ss_pred eCCCcchHHHHHHH---HHhCCCccCccccC
Confidence 47777776666632 23468999999997
No 89
>KOG2299|consensus
Probab=28.75 E-value=1.7e+02 Score=24.33 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=44.4
Q ss_pred eecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhh-cCceE
Q psy8857 49 ASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNN-LGIKI 111 (133)
Q Consensus 49 ~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~-~gl~I 111 (133)
.|+||+++ .+=+-.+-+.-++..+++.+.+.|+.-.+|++-..|+-+..-.|..+. .|+++
T Consensus 105 IS~~Ml~r--~kynLNevshdsam~LI~~v~~~gvnvteiyVDTVGpp~~Yq~kLek~FP~~k~ 166 (301)
T KOG2299|consen 105 ISASMLRR--NKYNLNEVSHDSAMGLIDEVLDQGVNVTEIYVDTVGPPAKYQEKLEKRFPGIKF 166 (301)
T ss_pred HHHHHHHH--hcCCchhhhhHHHHHHHHHHHHhCCceEEEEEecCCChHHHHHHHHhhCCCeEE
Confidence 37888877 333556667777888999999999999999999999876554444332 24543
No 90
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=28.43 E-value=1.1e+02 Score=25.80 Aligned_cols=47 Identities=26% Similarity=0.123 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeC---CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIKG---PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~kG---~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
++..++..+.+.|. .++|++-- ...|+.-..+.|.+.|+.++.|.|.
T Consensus 166 tal~~l~~A~~~g~-~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds 215 (331)
T TIGR00512 166 TALGVIRSAHEKGR-LEHVYADETRPRLQGARLTAWELVQEGIPATLITDS 215 (331)
T ss_pred hHHHHHHHHHHcCC-ceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEccc
Confidence 34567777777774 46666643 3456544457899999999999984
No 91
>KOG4716|consensus
Probab=28.22 E-value=96 Score=27.20 Aligned_cols=45 Identities=29% Similarity=0.640 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCCCC------------CCCCCC
Q psy8857 85 NLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHN------------GCRPSK 129 (133)
Q Consensus 85 ~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn------------GcR~kK 129 (133)
.-++.+=|-|.|--++-+--+..|-++.-+.-+.|-|++ ||=|||
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKK 75 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKK 75 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHH
Confidence 346777788999888888878889999999999999986 788876
No 92
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=27.82 E-value=53 Score=32.15 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=19.5
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|.. ....|+|+-|++||
T Consensus 355 vGpGRGSaAGSLVa---Y~LgIT~vDPl~y~ 382 (1135)
T PRK05673 355 VGPGRGSGAGSLVA---YALGITDLDPLRFG 382 (1135)
T ss_pred eCCCCchHHHHHHH---HHhcCCccCccccC
Confidence 37777676666633 23568999999996
No 93
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=27.34 E-value=1.9e+02 Score=22.56 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=45.1
Q ss_pred eeEEEEEcccCCeEEE----------EEcCCCC--eEEeeeccee-eecCCCCCCHHHHHHHHHHHHHHHHHc-CCcEEE
Q psy8857 22 EGVAHIHASFNNTIIT----------ITDRKGC--TLSWASSGSV-NFKGSRKSTPFAAQVAAESAGKIAIEH-GIKNLE 87 (133)
Q Consensus 22 ~~il~I~~t~NNTiit----------lTd~~G~--~l~~~S~G~~-gfKg~kk~t~~Aa~~aa~~~~~~~~~~-gi~~v~ 87 (133)
..++||+ -+||++=. .....|. ...|.|.|.. +|.-.+.+..+++... ..+++.+.+. +...|+
T Consensus 19 ~vlvfVH-Gyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l-~~~L~~L~~~~~~~~I~ 96 (233)
T PF05990_consen 19 EVLVFVH-GYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPAL-ARFLRDLARAPGIKRIH 96 (233)
T ss_pred eEEEEEe-CCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHH-HHHHHHHHhccCCceEE
Confidence 4566665 45665322 2223555 3556777764 6766665544444444 3445555554 888999
Q ss_pred EEEeCCCCChHHHHHHH
Q psy8857 88 VRIKGPGPGRESSVRAL 104 (133)
Q Consensus 88 v~~kG~G~Gr~~~lk~L 104 (133)
|.-...| -..++.+|
T Consensus 97 ilaHSMG--~rv~~~aL 111 (233)
T PF05990_consen 97 ILAHSMG--NRVLLEAL 111 (233)
T ss_pred EEEeCch--HHHHHHHH
Confidence 9988776 33444444
No 94
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.33 E-value=2.1e+02 Score=23.00 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChH-----HHHHH---------HhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRE-----SSVRA---------LNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~-----~~lk~---------L~~~gl~I~~I~D~Tpiph 122 (133)
...++......+.+.|.++|++.|.|+.=. -+..|- ..+.. +.+.|++|.-|-|...+|-
T Consensus 35 GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~~~Lp~ 109 (242)
T PRK14838 35 GHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDIAKLPE 109 (242)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCH
Confidence 466777778889999999999999998621 122231 11111 2357899999999998884
No 95
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.32 E-value=2e+02 Score=21.79 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcE
Q psy8857 34 TIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKN 85 (133)
Q Consensus 34 TiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~ 85 (133)
.++-+.|+.-..+.| |+|-+-..|++ +...+..+++++++.++++|++.
T Consensus 39 li~Rl~~Pk~t~lIF-~SGKiv~tGak--s~~~a~~a~~~~~~~L~~~g~~~ 87 (174)
T cd04518 39 LVYRLEDPKIAALIF-RSGKMVCTGAK--SVEDLHRAVKEIIKKLKDYGIKV 87 (174)
T ss_pred EEEEccCCcEEEEEE-CCCeEEEEccC--CHHHHHHHHHHHHHHHHhcCCCc
Confidence 334444454333333 56666666664 46678888899999999999653
No 96
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=26.75 E-value=3.1e+02 Score=23.32 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCCh---HHHHHHHhhcCceEEEEEecCCCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGR---ESSVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr---~~~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
.-||+-+..++..+++.+.+.+-..|.|=--.--.++ +++..+|...|++|..+ +.+|.|-
T Consensus 14 ~lt~~~v~~l~~a~~~~l~~~~~~~VvVg~D~R~~s~~~~~a~~~gL~s~G~~V~~~-g~~pTP~ 77 (443)
T cd03089 14 ELTEEIAYAIGRAFGSWLLEKGAKKVVVGRDGRLSSPELAAALIEGLLAAGCDVIDI-GLVPTPV 77 (443)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCHHHHHHHHHHHHHHcCCcEEEe-CCcchHH
Confidence 5789999888888888876543333433332222233 55677788899999888 6777763
No 97
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=26.73 E-value=92 Score=21.28 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=15.8
Q ss_pred EEEcccCCeEEEEEcCCCCeEEeee
Q psy8857 26 HIHASFNNTIITITDRKGCTLSWAS 50 (133)
Q Consensus 26 ~I~~t~NNTiitlTd~~G~~l~~~S 50 (133)
+......+.-|+++|.+|+++...+
T Consensus 42 ~F~~~~~~vtI~I~d~~G~vVy~~~ 66 (106)
T PF11589_consen 42 EFESPIGDVTITIKDSTGNVVYSET 66 (106)
T ss_dssp EESS--SEEEEEEEETT--EEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEE
Confidence 3444556788999999999887754
No 98
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.72 E-value=1.9e+02 Score=23.86 Aligned_cols=46 Identities=35% Similarity=0.364 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe---CCCCChHHHHHHHhhcCceEEEEEec
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIK---GPGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~k---G~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
+++.++..+.+.|-+ ++|++- -.+.||.. .+.|.+.|+.++.|.|.
T Consensus 132 tv~~~l~~A~~~~k~-~~V~v~EsrP~~~G~~~-a~~L~~~GI~vtlI~Ds 180 (310)
T PRK08535 132 AALSVIKTAHEQGKD-IEVIATETRPRNQGHIT-AKELAEYGIPVTLIVDS 180 (310)
T ss_pred HHHHHHHHHHHCCCe-EEEEEecCCchhhHHHH-HHHHHHCCCCEEEEehh
Confidence 556677777776644 555553 23456554 47788899999999985
No 99
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.65 E-value=1e+02 Score=28.08 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=45.0
Q ss_pred EEeeecceeeecCCCCC-CHHHHHHHHHHHHHHHHHcCC---cEEEEEEeCC--CCChHHHHHHHhhcCceEEEEEecC
Q psy8857 46 LSWASSGSVNFKGSRKS-TPFAAQVAAESAGKIAIEHGI---KNLEVRIKGP--GPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 46 l~~~S~G~~gfKg~kk~-t~~Aa~~aa~~~~~~~~~~gi---~~v~v~~kG~--G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
+.|+ .|++|--|+-|+ +..|.. .+..+-++-+--|+ ..|.+.++.+ +.|.+.++..+..+++.+.+|.|++
T Consensus 164 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T PRK15490 164 LALC-TGSLGSGGAERQISRLAIE-IARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKIT 240 (578)
T ss_pred eEEE-ecCCCCCchHHHHHHHHHH-HHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccc
Confidence 3443 366677776654 222222 22222222222233 4688998874 6678999999999999999999988
No 100
>KOG0747|consensus
Probab=26.41 E-value=1.7e+02 Score=24.74 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHH--HHHcCCcEEEEEEeC-CCCChH
Q psy8857 61 KSTPFAAQVAAESAGKI--AIEHGIKNLEVRIKG-PGPGRE 98 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~--~~~~gi~~v~v~~kG-~G~Gr~ 98 (133)
=.+||||..||..++=. -.+.|+..+.+...+ .||++.
T Consensus 153 PtnpyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~ 193 (331)
T KOG0747|consen 153 PTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQY 193 (331)
T ss_pred CCCchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcC
Confidence 46899998777544433 346788888888887 588763
No 101
>PRK04266 fibrillarin; Provisional
Probab=25.80 E-value=2.6e+02 Score=21.81 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCC----h--HHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPG----R--ESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~G----r--~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
|.....+.+.+.+.++.-|.--|.|..+....- + +..++.|...|+++....|.+|...|
T Consensus 152 p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~ 217 (226)
T PRK04266 152 PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKD 217 (226)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCC
Confidence 333333444555555555555555555443221 2 22567788899999999999887543
No 102
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=25.43 E-value=3.2e+02 Score=23.41 Aligned_cols=70 Identities=29% Similarity=0.361 Sum_probs=44.0
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC-cEEEEEEeCCCCCh---HHHHHHHhhcCceEEEEEecCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGI-KNLEVRIKGPGPGR---ESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi-~~v~v~~kG~G~Gr---~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
+.|.-|.-+. .-||+-+..++..+++.+.+.+. ..|-|=--.--.++ .++..+|...|++|..+ ..+|.|
T Consensus 6 t~GiRG~~~~-~lt~~~~~~lg~a~g~~l~~~~~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~~~-g~~pTP 79 (446)
T PRK14324 6 TDGVRGKAGE-KLTAFLAMRLAMAAGIYFKKHSITNKILVGKDTRRSGYMIENALVSGLTSVGYNVIQI-GPMPTP 79 (446)
T ss_pred CCCcceecCC-CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe-cCccHH
Confidence 3444443332 57999999999888888776553 23433333222222 45667788899999988 577766
No 103
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=25.39 E-value=58 Score=31.95 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|.. ....|+|+-|++||
T Consensus 355 vGpGRGSaAGSLVa---Y~LgIT~VDPl~y~ 382 (1151)
T PRK06826 355 VGPGRGSAAGSLVA---YTLGITKIDPIKYN 382 (1151)
T ss_pred eCCCcccHHHHHHH---HHhCCCccCccccC
Confidence 47777676666632 23468999999986
No 104
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.33 E-value=2.1e+02 Score=22.19 Aligned_cols=45 Identities=18% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCcEEEEEEeC-------CCCC-hHHHHHHHhhcCceEEEEE
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKG-------PGPG-RESSVRALNNLGIKITQIE 115 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG-------~G~G-r~~~lk~L~~~gl~I~~I~ 115 (133)
.+..++.+.++|+..|++...- +... .+.+-+.+...|++|.++.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEec
Confidence 4678889999999999995321 1111 2233334578899998865
No 105
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=25.32 E-value=91 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=24.3
Q ss_pred EEEEEeCCCCChHHHHHHH-hhcCceEEEEEe-cCC
Q psy8857 86 LEVRIKGPGPGRESSVRAL-NNLGIKITQIED-VTP 119 (133)
Q Consensus 86 v~v~~kG~G~Gr~~~lk~L-~~~gl~I~~I~D-~Tp 119 (133)
+.|-++|||.=-..++|++ ...+++|+-|-| .++
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~ 38 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMT 38 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 5788999996334566765 456799999988 444
No 106
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.86 E-value=1.5e+02 Score=24.55 Aligned_cols=47 Identities=26% Similarity=0.276 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEE---eCCCCChHHHHHHHhhcCceEEEEEec
Q psy8857 70 AAESAGKIAIEHGIKNLEVRI---KGPGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
+++.++..+.+.|.+ .+|++ +-.+.|.....+.|.+.|+.++.|.|.
T Consensus 138 tv~~~l~~A~~~g~~-~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Ds 187 (303)
T TIGR00524 138 TALGVIRSAWEDGKR-IRVIACETRPRNQGSRLTAWELMQDGIDVTLITDS 187 (303)
T ss_pred hHHHHHHHHHHcCCc-eEEEECCCCCccchHHHHHHHHHHCCCCEEEEChh
Confidence 566677778777754 55555 334566344557888899999999884
No 107
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.67 E-value=2.4e+02 Score=21.37 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=25.7
Q ss_pred eeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q psy8857 48 WASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIK 84 (133)
Q Consensus 48 ~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~ 84 (133)
-.|+|-+-..|++ |.+.+..|++++++.++++|++
T Consensus 52 IF~SGKiviTGak--s~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 52 IFSSGKMVCTGAK--SEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred EECCCeEEEEecC--CHHHHHHHHHHHHHHHHHcCCC
Confidence 3466766667664 4567777889999999999964
No 108
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=24.66 E-value=95 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.4
Q ss_pred eeEEEEEcccCCeEEEEEcCCC
Q psy8857 22 EGVAHIHASFNNTIITITDRKG 43 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd~~G 43 (133)
.....|-+-+|+|+||..|.+.
T Consensus 60 ~d~AlVvsv~NrTVITAmd~~~ 81 (96)
T TIGR02530 60 NDAALVVSLKNRTVITAMDKDE 81 (96)
T ss_pred CCEEEEEEcCCCeEEEEeCchh
Confidence 4667899999999999999653
No 109
>PRK10646 ADP-binding protein; Provisional
Probab=24.64 E-value=3e+02 Score=20.51 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhh-cCc
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNN-LGI 109 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~-~gl 109 (133)
++.+....++.+++.++. . -.|.+.| .|.|+.++.|+|.+ -|+
T Consensus 10 s~~~t~~l~~~la~~l~~---g-~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 10 DEQATLDLGARVAKACDG---A-TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CHHHHHHHHHHHHHhCCC---C-cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456666677777655532 2 2477888 79999999999954 354
No 110
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.51 E-value=2e+02 Score=24.26 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeC---CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIKG---PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~kG---~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
++..++..+.+.|-. ++|++-- .+.|..-..+.|.+.|+.++.|.|.
T Consensus 156 Tal~~l~~A~~~gk~-f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Ds 205 (329)
T PRK06371 156 TALAPIRIAHRNGKN-IFVFVDETRPRLQGARLTAWELAQEGIDHAIIADN 205 (329)
T ss_pred hHHHHHHHHHHcCCe-eEEEECCCCCcchHHHHHHHHHHHCCCCEEEEccc
Confidence 566778888887755 7777744 3445554457888899999999984
No 111
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=24.44 E-value=95 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=24.8
Q ss_pred EEEEEeCCCCChHHHHHHH-hhcCceEEEEEe-cCC
Q psy8857 86 LEVRIKGPGPGRESSVRAL-NNLGIKITQIED-VTP 119 (133)
Q Consensus 86 v~v~~kG~G~Gr~~~lk~L-~~~gl~I~~I~D-~Tp 119 (133)
+.|-++|||.--..++|++ ...+++|+-|-| .++
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~ 38 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVS 38 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 5788999986335566775 456799999998 444
No 112
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=24.43 E-value=1.8e+02 Score=19.23 Aligned_cols=39 Identities=31% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCCh
Q psy8857 59 SRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGR 97 (133)
Q Consensus 59 ~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr 97 (133)
....+...-+.+.+.+++.+.+.+++.|.+-.=|.|.+.
T Consensus 70 ~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g 108 (118)
T PF01661_consen 70 GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGG 108 (118)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTS
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCC
Confidence 456778888889999999999999998887766655543
No 113
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=24.42 E-value=4.1e+02 Score=22.67 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC--CcEEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEecCCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHG--IKNLEVRIKGPGPG---RESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~g--i~~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
.-||+-+...+..++..+.+.+ -..|-|=--.--.+ .+++..+|...|++|..+.+..|.|
T Consensus 15 ~lt~~~~~~lg~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G~~V~~~~g~~pTP 80 (461)
T cd05800 15 DFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDRPVPTP 80 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCcHHHHHHHHHHHHHCCCEEEEcCCCCCch
Confidence 4688888888888888876531 23343333222223 3567788888999999987677766
No 114
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=24.22 E-value=4e+02 Score=23.55 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=44.4
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC-cEEEEEEeCCCCCh---HHHHHHHhhcCceEEEEEe--cCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGI-KNLEVRIKGPGPGR---ESSVRALNNLGIKITQIED--VTPIP 121 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi-~~v~v~~kG~G~Gr---~~~lk~L~~~gl~I~~I~D--~Tpip 121 (133)
++|.=|.-+...-|++.+..+++.+++.+.+.|. ..|.|=.-+--.++ +++..+|...|++|..+.| ..|.|
T Consensus 43 T~GiRG~~~~~~lt~~~~~~i~~a~a~~~~~~~~~~~VvVG~D~R~sS~~~~~a~a~gL~s~Gi~V~~~~~~G~~pTP 120 (543)
T TIGR01132 43 TSGHRGSALRGTFNEPHILAIAQAIAEYRAAQGITGPLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGFTPTP 120 (543)
T ss_pred CccccCCcccCccCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCch
Confidence 4443333233447999999999988888876663 22333333222233 4567788889999998865 45555
No 115
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=24.10 E-value=2.6e+02 Score=19.61 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=43.8
Q ss_pred cceeeecCCCCCCHHHHHHHHHHHHHHHHHc-CCcEEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEecCCCC
Q psy8857 51 SGSVNFKGSRKSTPFAAQVAAESAGKIAIEH-GIKNLEVRIKGPGPG---RESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 51 ~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~-gi~~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
.|.-|--+...-||+.+...+..+++.+.+. .-..|.|=.-.--.+ .+++..+|...|++|..+. .+|.|
T Consensus 7 ~girG~~~~~~lt~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g-~~~tP 80 (137)
T PF02878_consen 7 SGIRGIINVGELTPEFAARLAQAFASYLKEKGNGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIG-LVPTP 80 (137)
T ss_dssp TSEEEECTHTTBSHHHHHHHHHHHHHHHHHTTTSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEE-EB-HH
T ss_pred CCeeEEeCCCCCCHHHHHHHHHHHHHhhcccCCCCeEEEEEcccCCHHHHHHHHHHHHhhccccccccc-ccCcH
Confidence 3444433333479999999999999988875 334444444332222 2556777888999988776 55444
No 116
>PRK09875 putative hydrolase; Provisional
Probab=24.01 E-value=2.1e+02 Score=23.43 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHcCCcEEEEEEeCCCCChHH-HHHHH-hhcCceEEE
Q psy8857 75 GKIAIEHGIKNLEVRIKGPGPGRES-SVRAL-NNLGIKITQ 113 (133)
Q Consensus 75 ~~~~~~~gi~~v~v~~kG~G~Gr~~-~lk~L-~~~gl~I~~ 113 (133)
++..++.|...| |-....|.||+. .++.+ .+.|++|+-
T Consensus 40 l~~~~~~Gg~ti-Vd~T~~g~GRd~~~l~~is~~tgv~Iv~ 79 (292)
T PRK09875 40 MNDLMTRGVRNV-IEMTNRYMGRNAQFMLDVMRETGINVVA 79 (292)
T ss_pred HHHHHHhCCCeE-EecCCCccCcCHHHHHHHHHHhCCcEEE
Confidence 345667899887 677788888977 57777 567988865
No 117
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.97 E-value=67 Score=31.07 Aligned_cols=28 Identities=39% Similarity=0.647 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|.. ....|+|+-|++||
T Consensus 359 vGpGRGSaAgSlVa---Y~LgIT~VDPl~~~ 386 (1022)
T TIGR00594 359 VGPGRGSAAGSLVA---YALKITDIDPIKHG 386 (1022)
T ss_pred eCCCCChHHHHHHH---HHhcCCccCccccC
Confidence 46777676666633 23468999999996
No 118
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=23.90 E-value=90 Score=20.78 Aligned_cols=29 Identities=28% Similarity=0.686 Sum_probs=23.4
Q ss_pred EEEeC-CCCChHHHHHHHhhc-CceEEEEEe
Q psy8857 88 VRIKG-PGPGRESSVRALNNL-GIKITQIED 116 (133)
Q Consensus 88 v~~kG-~G~Gr~~~lk~L~~~-gl~I~~I~D 116 (133)
|.|-| +|.|+.++.+.|++. |+.+.++.|
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 45666 689999999999775 998888777
No 119
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=23.78 E-value=68 Score=31.54 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=19.2
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|-. ....|+|+-|++||
T Consensus 366 vGPGRGSaAGSLVa---Y~LgIT~VDPl~y~ 393 (1170)
T PRK07374 366 VGPGRGSAAGSLVA---YALGITNIDPVKNG 393 (1170)
T ss_pred eCCCCchHHHHHHH---HHhcCCccCccccC
Confidence 47777676566632 23468999999996
No 120
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.65 E-value=99 Score=24.77 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVR 89 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~ 89 (133)
.=|||+. +.+.+.+-|.++|++++++.
T Consensus 73 THPfA~~-is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 73 THPYAAQ-ISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CCccHHH-HHHHHHHHHHHhCCcEEEEe
Confidence 3588877 55788999999999998875
No 121
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.61 E-value=60 Score=23.42 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=28.2
Q ss_pred HHHHHcCCcEEEEEEeCCCCC------hHHHHHHHhhcCceEEEEEecC
Q psy8857 76 KIAIEHGIKNLEVRIKGPGPG------RESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 76 ~~~~~~gi~~v~v~~kG~G~G------r~~~lk~L~~~gl~I~~I~D~T 118 (133)
+.++++|+..|++.+.-...- .+.+.+.+.+.|+.|.++.-.+
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~ 50 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPT 50 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 567788888888887543322 3455666677888877765433
No 122
>PRK00394 transcription factor; Reviewed
Probab=23.52 E-value=3e+02 Score=20.92 Aligned_cols=49 Identities=27% Similarity=0.192 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcE
Q psy8857 34 TIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKN 85 (133)
Q Consensus 34 TiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~ 85 (133)
.++-+.|+.--.+. +++|-+-..|++ |...+..|++++++.++++|++.
T Consensus 38 li~Rl~~Pk~t~lI-f~sGKiv~tGa~--S~~~a~~a~~~~~~~l~~~g~~~ 86 (179)
T PRK00394 38 LVYRLEDPKIAALI-FRSGKVVCTGAK--SVEDLHEAVKIIIKKLKELGIKV 86 (179)
T ss_pred EEEEecCCceEEEE-EcCCcEEEEccC--CHHHHHHHHHHHHHHHHHcCCCc
Confidence 33444455433333 466666666664 45678888899999999999754
No 123
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=23.52 E-value=61 Score=31.30 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|.. ....|+|+-|++||
T Consensus 289 vGpGRGSaAGSLVa---Y~LgIT~VDPl~y~ 316 (973)
T PRK07135 289 IGPGRGSASGSLVS---YLLNITSVNPLKYD 316 (973)
T ss_pred eCCCCcchHHHHHH---HHhcCCccCccccC
Confidence 36777666555532 23468999999996
No 124
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=23.49 E-value=3.2e+02 Score=22.73 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=54.2
Q ss_pred EEEcCCCCeEEeeecceeeecCCCCCCHHHH-HHHHHHHHH-HHHHcCCcEEEEEE----e-------------------
Q psy8857 37 TITDRKGCTLSWASSGSVNFKGSRKSTPFAA-QVAAESAGK-IAIEHGIKNLEVRI----K------------------- 91 (133)
Q Consensus 37 tlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa-~~aa~~~~~-~~~~~gi~~v~v~~----k------------------- 91 (133)
.++.+..+-++-.+.|.+-|.-..|.-|.+- +.+-+.+++ .|.+.|++.+...= +
T Consensus 135 dy~~le~~~~FLEgTG~mV~Dh~nr~aY~~lS~Rad~~lLe~fc~~~gy~~vvf~qT~de~g~PiYHTNVmMaige~fav 214 (318)
T COG4874 135 DYLALEEQQAFLEGTGVMVMDHPNRTAYAGLSQRADRELLEVFCEQIGYSRVVFFQTRDESGSPIYHTNVMMAIGEHFAV 214 (318)
T ss_pred hhhccCcccceeeccceEEecccchhhhhhhhcccCHHHHHHHHHHcCCceeeeeeeccccCCcceehhHHHHhhhheee
Confidence 3344455567778899988876666555443 344455554 68889998776541 1
Q ss_pred -C----CCCChHHHHHHHhhcCceEEEEEe
Q psy8857 92 -G----PGPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 92 -G----~G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
+ ..+-|..++|.|.+.|-.|++|..
T Consensus 215 ic~~~i~~~~R~~vir~L~~dgkeiv~is~ 244 (318)
T COG4874 215 ICDEAIPEYERRFVIRSLAKDGKEIVSISI 244 (318)
T ss_pred eeccccccHHHHHHHHHHHhCCCeEEEeeH
Confidence 1 245688999999999999998864
No 125
>PRK14742 thrL thr operon leader peptide; Provisional
Probab=23.42 E-value=58 Score=17.54 Aligned_cols=15 Identities=53% Similarity=0.713 Sum_probs=11.8
Q ss_pred ccCCeEEEEEcCCCC
Q psy8857 30 SFNNTIITITDRKGC 44 (133)
Q Consensus 30 t~NNTiitlTd~~G~ 44 (133)
+.+-||||-|+-.|+
T Consensus 11 ~l~ttiittt~ttg~ 25 (28)
T PRK14742 11 SLNTTIITTTETTGY 25 (28)
T ss_pred EeEEEEEEEEEeccc
Confidence 466789999987775
No 126
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=23.29 E-value=71 Score=31.07 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 93 PGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
.||||=++--.|-. ....|+|+-|++||
T Consensus 297 vGPGRGSaAGSLVa---Y~LgIT~vDPl~y~ 324 (1034)
T PRK07279 297 MGMGRGSAAGSLVA---YALDITGIDPVKHN 324 (1034)
T ss_pred eCCCCchHHHHHHH---HHhcCCccCccccC
Confidence 47777676666632 23468999999996
No 127
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=23.14 E-value=4.7e+02 Score=22.24 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=44.7
Q ss_pred ceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCc--EEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEecCCCC
Q psy8857 52 GSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIK--NLEVRIKGPGPG---RESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 52 G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~--~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
|.-|.-|...-||+-+..++..++..+.+.+.. .|-|=.-+--.+ ..++..+|...|++|..+ +.+|.|
T Consensus 5 giRG~~~~~~ltp~~~~~l~~a~~~~l~~~~~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~~V~~~-g~~pTP 78 (443)
T TIGR01455 5 GVRGRAGQEPLTAELALLLGAAAGRVLRQGRDTAPRVVIGKDTRLSGYMLENALAAGLNSAGVDVLLL-GPLPTP 78 (443)
T ss_pred ccceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe-CCcCcH
Confidence 333433333479999999998888887764422 344433332222 356777888899999888 688877
No 128
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=22.96 E-value=4.3e+02 Score=21.67 Aligned_cols=46 Identities=35% Similarity=0.390 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEEe---CCCCChHHHHHHHhhcCceEEEEEec
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIK---GPGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~k---G~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
+++.++..+.+.|.. ++|++- -.+.||.. .+.|.+.|+.++.|.|.
T Consensus 127 tv~~~l~~a~~~~~~-f~V~v~EsrP~~~G~~~-a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 127 AALSVIKTAFEQGKD-IEVIATETRPRKQGHIT-AKELRDYGIPVTLIVDS 175 (301)
T ss_pred HHHHHHHHHHHcCCc-EEEEEecCCCcchHHHH-HHHHHHCCCCEEEEehh
Confidence 456677777776644 566663 24456554 47888899999999985
No 129
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=22.89 E-value=4.8e+02 Score=22.40 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHc-CCcEEEEEEeCCCCCh---HHHHHHHhhcCceEEEEEecCCCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEH-GIKNLEVRIKGPGPGR---ESSVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~-gi~~v~v~~kG~G~Gr---~~~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
.-||+-+..+++.+++.+... +-..|.|=.-+--.++ .++..+|...|++|..+ ..+|.|-
T Consensus 13 ~ltpe~~~~l~~a~~~~l~~~~~~~~VvVG~D~R~~s~~l~~a~~~gL~~~Gv~V~~~-g~~pTP~ 77 (459)
T cd03088 13 DLTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVDC-GAVPTPA 77 (459)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEe-CCCCCHH
Confidence 479999998988888877642 2233433333323333 45677788899999988 5777763
No 130
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.72 E-value=1.9e+02 Score=20.12 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEEEEeCC-CCChHHHHHHH-hhcCceEEEEEecCCCCCC
Q psy8857 86 LEVRIKGP-GPGRESSVRAL-NNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 86 v~v~~kG~-G~Gr~~~lk~L-~~~gl~I~~I~D~Tpiphn 123 (133)
++|.+-|. |.=-..+++.+ ...++++.-..|..+-|+-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~ 40 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV 40 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc
Confidence 46777787 64224455555 5589999999999984443
No 131
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=22.58 E-value=2.4e+02 Score=18.73 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHH-HHcCCcEEEEEEeCCCCChHHHHHHHhhcCce
Q psy8857 60 RKSTPFAAQVAAESAGKIA-IEHGIKNLEVRIKGPGPGRESSVRALNNLGIK 110 (133)
Q Consensus 60 kk~t~~Aa~~aa~~~~~~~-~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~ 110 (133)
-++.-++.. +...+.+.+ .++|+..|...+..-+ .++++.+.+.|++
T Consensus 95 ~~g~G~~~~-~~~~~~~~~~~~~~~~~i~a~~~~~N---~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 95 YRGKGYGTE-ALKLLLDWAFEELGLHRIIATVMADN---EASRRLLEKLGFE 142 (142)
T ss_dssp GTTSSHHHH-HHHHHHHHHHHTSTSSEEEEEEETT----HHHHHHHHHTT-E
T ss_pred HHhhhHHHH-HHHHHHHHHHhcCCcEEEEEEECcCC---HHHHHHHHHcCCC
Confidence 345556655 445567777 6899999999988644 4677777777764
No 132
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.28 E-value=2e+02 Score=22.99 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=31.1
Q ss_pred CCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 43 GCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 43 G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
|.++...|+|+ .+..++-.+..+|++...+.=.+..+.+ +..+...|-+|..+
T Consensus 57 g~~vv~aSsGN----------------~g~alA~~a~~~Gl~~~i~vp~~~~~~k---~~~~~~~GA~v~~~ 109 (298)
T TIGR01139 57 GKTIVEPTSGN----------------TGIALAMVAAARGYKLILTMPETMSIER---RKLLKAYGAELVLT 109 (298)
T ss_pred CCEEEEeCCCh----------------hHHHHHHHHHHcCCeEEEEeCCccCHHH---HHHHHHcCCEEEEE
Confidence 35577788886 4455666777788875555445544433 34444455555544
No 133
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.24 E-value=1.1e+02 Score=24.49 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEE
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRI 90 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~ 90 (133)
.=|||.+ +.+.+.+-|.++|+.++++.=
T Consensus 74 THPfA~~-is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 74 THPFAAE-ISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred CCchHHH-HHHHHHHHHhhcCcceEEEEc
Confidence 3588877 557899999999999887653
No 134
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.19 E-value=1.4e+02 Score=23.93 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVR 89 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~ 89 (133)
..|||+. +.+.+.+-|.++|+.++++.
T Consensus 73 tHPfA~~-is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 73 THPFAAQ-ITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred CCHHHHH-HHHHHHHHHHHhCCcEEEEE
Confidence 4678775 66788999999999999874
No 135
>PRK14743 thrL thr operon leader peptide; Provisional
Probab=22.10 E-value=64 Score=17.12 Aligned_cols=15 Identities=40% Similarity=0.346 Sum_probs=11.3
Q ss_pred ccCCeEEEEEcCCCC
Q psy8857 30 SFNNTIITITDRKGC 44 (133)
Q Consensus 30 t~NNTiitlTd~~G~ 44 (133)
+.+-|++|.|+-.|+
T Consensus 5 s~~ttiit~t~ttgn 19 (26)
T PRK14743 5 GMITTIITTTITTGN 19 (26)
T ss_pred eeEEEEEEEEEecCC
Confidence 456788998887776
No 136
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=22.05 E-value=1.3e+02 Score=25.55 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=24.7
Q ss_pred EEEEEeCCCC-ChHHHHHHH-hhc-CceEEEEEecCC
Q psy8857 86 LEVRIKGPGP-GRESSVRAL-NNL-GIKITQIEDVTP 119 (133)
Q Consensus 86 v~v~~kG~G~-Gr~~~lk~L-~~~-gl~I~~I~D~Tp 119 (133)
+.|-++|||. ||- +++++ .+. .++|.-|-|.|+
T Consensus 2 ikV~INGfGrIGR~-v~ra~~~~~~dieVVaInd~t~ 37 (335)
T COG0057 2 IKVAINGFGRIGRL-VARAALERDGDIEVVAINDLTD 37 (335)
T ss_pred cEEEEecCcHHHHH-HHHHHHhCCCCeEEEEEecCCC
Confidence 5788999996 555 45666 555 599999999765
No 137
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.74 E-value=2.6e+02 Score=20.14 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=41.4
Q ss_pred EcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhc
Q psy8857 28 HASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNL 107 (133)
Q Consensus 28 ~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~ 107 (133)
++-+-.+|.-+...+|++..+..--..+. + +..-++..+++.+.+.|+.-| ...++|++ ++..|.+.
T Consensus 19 hFgrap~F~Ivd~e~g~i~~vev~~np~~-----~---~~~g~G~~~a~~l~~~gvdvv--i~~~iG~~---a~~~l~~~ 85 (121)
T COG1433 19 HFGRAPYFTIVDVEDGEIKNVEVIENPAA-----S---AEKGAGIRIAELLVDEGVDVV--IASNIGPN---AYNALKAA 85 (121)
T ss_pred CccCCceEEEEEecCCcEEEEEEeecccc-----c---ccCcchHHHHHHHHHcCCCEE--EECccCHH---HHHHHHHc
Confidence 34455566666556677655543322211 1 111134556778888888754 45677874 45566667
Q ss_pred CceEEEE
Q psy8857 108 GIKITQI 114 (133)
Q Consensus 108 gl~I~~I 114 (133)
|++|...
T Consensus 86 GIkv~~~ 92 (121)
T COG1433 86 GIKVYVA 92 (121)
T ss_pred CcEEEec
Confidence 7776543
No 138
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=21.52 E-value=77 Score=30.64 Aligned_cols=43 Identities=33% Similarity=0.417 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCCCC
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHN 123 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tpiphn 123 (133)
+..++.+.|++.||. .||||=++--.|.. ....|+|+-|++||
T Consensus 276 IV~D~i~~Ar~~gI~--------vGpGRGSAAGSLVa---Y~LgIT~VDPl~~~ 318 (971)
T PRK05898 276 IVYDFINFAKSNGII--------IGPGRGSAAGSLIA---YLLHITDIDPIKYN 318 (971)
T ss_pred HHHHHHHHHHHCCce--------eCCCCccHHHHHHH---HHhcCCccCccccC
Confidence 334445555554433 46777666555532 23468999999996
No 139
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=21.48 E-value=1.8e+02 Score=22.78 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCChHH-----HHHHH-----------h--hcCceEEEEEecCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGRES-----SVRAL-----------N--NLGIKITQIEDVTPIP 121 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr~~-----~lk~L-----------~--~~gl~I~~I~D~Tpip 121 (133)
...++......+.+.|.++||+.|.|+. .--+..|.. .+..+ . +.|+.|.-|-|.+.+|
T Consensus 19 Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iGd~~~Lp 96 (223)
T PF01255_consen 19 GHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVIGDLSLLP 96 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES-GGGS-
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEeccCcCC
Confidence 3456667778889999999999999996 222223311 12111 1 4688999999999988
No 140
>PRK08356 hypothetical protein; Provisional
Probab=21.43 E-value=1.6e+02 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEe
Q psy8857 82 GIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 82 gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
|.....|.|-| +|.|+.++-+.|...|+.+.+..|
T Consensus 2 ~~~~~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~ 37 (195)
T PRK08356 2 GVEKMIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSD 37 (195)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHCCCcEEeCCC
Confidence 33344566666 799999999999777777655554
No 141
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.35 E-value=3.7e+02 Score=21.41 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tpi 120 (133)
.+-+.|+....-.+++.+...|++.|..+..- ...+.|.+.|+.+..|.+...+
T Consensus 116 g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~------~meril~r~Gw~~~riG~~~~i 169 (209)
T COG3916 116 GGVSPAAYELFAGMIEYALARGITGIVTVTDT------GMERILRRAGWPLTRIGPPLTI 169 (209)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCceEEEEEch------HHHHHHHHcCCCeEEcCCceee
Confidence 34344676677778999999999999877652 3567888889988888776554
No 142
>PF14877 mIF3: Mitochondrial translation initiation factor
Probab=21.26 E-value=4e+02 Score=20.69 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEE-EEEEeCCCCChH----HHHHHH--hhcCceEEEEEecC---CCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNL-EVRIKGPGPGRE----SSVRAL--NNLGIKITQIEDVT---PIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v-~v~~kG~G~Gr~----~~lk~L--~~~gl~I~~I~D~T---piph 122 (133)
.+-|+.|+..+++++.++.-... .++-.+-|.=.+ -+++.| ...||.|+.+.+.+ ++|.
T Consensus 12 se~aq~A~~svi~ki~~~n~~g~Vk~inp~t~~Le~~~l~~~~~~lDL~~~Gl~iV~~~~~~~~~~lPL 80 (181)
T PF14877_consen 12 SERAQEAANSVISKIFKINPNGKVKFINPETNKLEESNLRDIAKGLDLSKHGLQIVNSEKDQKGRDLPL 80 (181)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCeEEEEcCCCCcceeeeHHHHHHhCCccccceEEecccccCCCCcCce
Confidence 35788888999999988776543 333233331122 244554 57899999888877 6663
No 143
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=21.21 E-value=1.5e+02 Score=25.76 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=31.7
Q ss_pred EEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC------------CCCCCCCCCCC
Q psy8857 86 LEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP------------IPHNGCRPSKR 130 (133)
Q Consensus 86 v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp------------iphnGcR~kK~ 130 (133)
.+|.+=|-|++-..+-..+.+.|.++.-|+...| ..+.||=|.|.
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~ 59 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKL 59 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhH
Confidence 3678889998665555557778999998885332 24458988874
No 144
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=20.99 E-value=5.3e+02 Score=22.02 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=45.8
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC-cEEEEEEeCCCCCh---HHHHHHHhhcCceEEEEEecCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGI-KNLEVRIKGPGPGR---ESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi-~~v~v~~kG~G~Gr---~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
+.|.-|.-+...-||+-+..++..+++.+...+- ..|.|=--+--.++ ++++.+|...|++|..+ ..+|.|
T Consensus 8 t~GiRG~~~~~~lt~e~~~~l~~a~~~~l~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~s~Gv~V~~~-g~~ptP 82 (450)
T PRK14314 8 TDGVRGRANVYPMTAEMALQLGRAAAYVFRNGSGRHRVVIGKDTRLSGYMFENALIAGLCSMGVDVLLV-GPLPTP 82 (450)
T ss_pred CCCcceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe-cccCCH
Confidence 4455454444447999999999888887764331 23444333323343 56777888999999888 577776
No 145
>PLN00062 TATA-box-binding protein; Provisional
Probab=20.64 E-value=3.1e+02 Score=20.94 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.0
Q ss_pred eeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy8857 48 WASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGI 83 (133)
Q Consensus 48 ~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi 83 (133)
-.|+|-+-..|++ |...+..|+.++++.++++|+
T Consensus 52 IF~SGKiviTGak--s~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 52 IFASGKMVCTGAK--SEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred EECCCeEEEEecC--CHHHHHHHHHHHHHHHHHcCC
Confidence 3466666666654 456777788999999999997
No 146
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=20.49 E-value=1e+02 Score=26.05 Aligned_cols=44 Identities=36% Similarity=0.604 Sum_probs=31.1
Q ss_pred EEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC----CCCCCCCCCC
Q psy8857 85 NLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP----IPHNGCRPSK 129 (133)
Q Consensus 85 ~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp----iphnGcR~kK 129 (133)
..+|.+=|-|++-.++-..|.+.|.++.-|+. -. ..+.||-|.|
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk 50 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSK 50 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHH
Confidence 35788889999777776777778999887765 22 2344777765
No 147
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=20.40 E-value=5.4e+02 Score=21.93 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=44.9
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC-cEEEEEEeCCCCC---hHHHHHHHhhcCceEEEEEecCCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGI-KNLEVRIKGPGPG---RESSVRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi-~~v~v~~kG~G~G---r~~~lk~L~~~gl~I~~I~D~Tpiph 122 (133)
+.|.-|.-+...-||+-+..+++.++..+.+.+- ..|.|=--.--.+ ..+++.+|...|++|..+ ..+|.|.
T Consensus 8 ~~giRG~~~~~~lt~e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~-g~~pTP~ 83 (448)
T PRK14315 8 TDGIRGRANTFPMTAELALRVGQAAGLYFRRGDHRHRVVIGKDTRLSGYMIENALVAGFTSVGMDVLLL-GPIPTPA 83 (448)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhHhhcCCCceEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe-CCcccHH
Confidence 4444444333347999999999988887765321 1343333222223 345677888899999888 6777763
No 148
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.30 E-value=1.8e+02 Score=23.19 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEE---eCCCCChH---HHHH-----------HHhhcCceEEEEEecCCCCC
Q psy8857 63 TPFAAQVAAESAGKIAIEHGIKNLEVRI---KGPGPGRE---SSVR-----------ALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~gi~~v~v~~---kG~G~Gr~---~~lk-----------~L~~~gl~I~~I~D~Tpiph 122 (133)
...++..+...+.+.|.++|++.|.|+. ..|..-.+ ..+. .+.+.|++|.-|-|...+|-
T Consensus 29 GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~ 105 (233)
T PRK14833 29 GHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSK 105 (233)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeChhhCCH
Confidence 4567777888899999999999999986 22322111 1111 22345889999999988874
No 149
>PRK13748 putative mercuric reductase; Provisional
Probab=20.21 E-value=1.3e+02 Score=26.20 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=34.7
Q ss_pred EEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC---CCCCCCCCCC
Q psy8857 85 NLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP---IPHNGCRPSK 129 (133)
Q Consensus 85 ~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp---iphnGcR~kK 129 (133)
..+|.+=|-||+-.++-..|.+.|+++.-|+.-.. ..+.||=|.|
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk 145 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSK 145 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccH
Confidence 46889999999888887788888999988886511 2456888876
No 150
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=20.08 E-value=3.2e+02 Score=19.99 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 65 FAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 65 ~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
++.. +.+.+.+.+.++|+..|.+.+.-.+ ..+++...+.|+...
T Consensus 140 ~G~~-ll~~~~~~a~~~g~~~I~l~v~~~N---~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 140 IGAE-LMQTALNWCYARGLTRLRVATQMGN---TAALRLYIRSGANIE 183 (191)
T ss_pred HHHH-HHHHHHHHHHHcCCCEEEEEeCCCC---HHHHHHHHHcCCccc
Confidence 4444 5567888888999999999886443 456666677777643
No 151
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=20.04 E-value=3e+02 Score=23.24 Aligned_cols=47 Identities=28% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEeC---CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 70 AAESAGKIAIEHGIKNLEVRIKG---PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 70 aa~~~~~~~~~~gi~~v~v~~kG---~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
++..++..+.+.|.. ++|++-- ...|+.-....|.++|+.++.|.|.
T Consensus 166 Tal~~i~~A~~~gk~-~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Ds 215 (344)
T PRK05720 166 TALAPIYAAKEKGID-IHVYADETRPRLQGARLTAWELYQAGIDVTVITDN 215 (344)
T ss_pred HHHHHHHHHHHcCCc-eEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEccc
Confidence 455677777777755 6666633 4556655567888999999999995
No 152
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=20.04 E-value=1.3e+02 Score=25.73 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHH---HHHcCCcEEEEEE
Q psy8857 33 NTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKI---AIEHGIKNLEVRI 90 (133)
Q Consensus 33 NTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~---~~~~gi~~v~v~~ 90 (133)
|++|.+|+ ++...|.-|+|.-.. +.+.|....-+.+.++ +.+.|++.|.+..
T Consensus 60 n~~in~TN-----~C~~~C~fCaF~~~~-~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~g 114 (370)
T COG1060 60 NRNINYTN-----ICVNDCTFCAFYRKP-GDPKAYTLSPEEILEEVREAVKRGITEVLIVG 114 (370)
T ss_pred eecCCcch-----hhcCCCCccccccCC-CCccccccCHHHHHHHHHHHHHcCCeEEEEec
Confidence 56666775 577799999998665 4445555555555554 4467887776543
Done!