Query psy8857
Match_columns 133
No_of_seqs 126 out of 877
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_K 30S ribosomal protein S 100.0 8E-55 2.7E-59 313.1 14.3 116 18-133 2-117 (117)
2 2vqe_K 30S ribosomal protein S 100.0 2.7E-54 9.3E-59 314.9 13.8 118 16-133 10-127 (129)
3 3bbn_K Ribosomal protein S11; 100.0 4E-53 1.4E-57 312.2 11.4 117 17-133 24-140 (140)
4 3j20_M 30S ribosomal protein S 100.0 9.9E-50 3.4E-54 293.2 15.3 115 19-133 11-137 (137)
5 3u5c_O RP59A, 40S ribosomal pr 100.0 7.9E-50 2.7E-54 293.7 8.3 116 17-132 9-133 (137)
6 2xzm_K RPS14E; ribosome, trans 100.0 1.5E-47 5.1E-52 285.4 13.0 116 18-133 24-148 (151)
7 3v2d_S 50S ribosomal protein L 97.7 0.00014 4.8E-09 51.3 7.3 86 22-110 23-111 (112)
8 3r8s_O 50S ribosomal protein L 97.6 0.0004 1.4E-08 49.1 9.0 91 20-110 20-115 (116)
9 1ovy_A 50S ribosomal protein L 97.5 0.00015 5E-09 51.7 5.1 89 22-110 28-119 (120)
10 1vq8_N 50S ribosomal protein L 97.2 0.0023 7.8E-08 48.7 9.2 90 21-111 31-130 (187)
11 2zjr_L 50S ribosomal protein L 97.2 0.0002 6.8E-09 50.6 2.7 87 20-110 24-113 (114)
12 3j21_O 50S ribosomal protein L 96.8 0.001 3.5E-08 51.2 4.3 98 22-128 32-139 (203)
13 3bbo_Q Ribosomal protein L18; 96.6 0.0014 4.7E-08 48.9 3.5 89 22-110 65-160 (161)
14 2zkr_n 60S ribosomal protein L 96.1 0.052 1.8E-06 43.8 10.0 102 17-128 43-181 (297)
15 4a17_M RPL5, 60S ribosomal pro 94.7 0.17 5.7E-06 40.9 8.6 102 18-128 44-181 (301)
16 3u5e_D 60S ribosomal protein L 94.6 0.22 7.4E-06 40.2 9.0 101 18-128 44-181 (297)
17 3iz5_Q 60S ribosomal protein L 84.3 3 0.0001 33.7 6.9 90 30-128 57-181 (304)
18 4e0a_A BH1408 protein; structu 55.3 38 0.0013 21.6 6.9 57 61-121 101-157 (164)
19 3aoe_E Glutamate dehydrogenase 49.0 26 0.00088 29.2 5.2 57 61-118 195-251 (419)
20 3k92_A NAD-GDH, NAD-specific g 48.3 17 0.00058 30.4 4.0 58 61-119 198-255 (424)
21 2jvf_A De novo protein M7; tet 47.1 37 0.0013 22.0 4.6 29 65-93 60-88 (96)
22 3kws_A Putative sugar isomeras 46.7 14 0.00048 27.5 3.0 44 72-115 41-84 (287)
23 2q02_A Putative cytoplasmic pr 45.5 45 0.0015 24.1 5.7 44 72-115 22-71 (272)
24 3aog_A Glutamate dehydrogenase 45.0 30 0.001 29.0 5.0 58 61-119 212-269 (440)
25 2vg3_A Undecaprenyl pyrophosph 44.0 54 0.0018 26.0 6.1 58 65-122 82-156 (284)
26 3qxb_A Putative xylose isomera 43.6 41 0.0014 25.4 5.3 44 72-115 38-90 (316)
27 3ngf_A AP endonuclease, family 43.0 36 0.0012 25.0 4.8 44 71-115 25-68 (269)
28 2d2r_A Undecaprenyl pyrophosph 41.4 58 0.002 25.1 5.9 58 65-122 42-116 (245)
29 1f75_A Undecaprenyl pyrophosph 40.7 58 0.002 25.1 5.8 59 64-122 46-121 (249)
30 3obe_A Sugar phosphate isomera 39.8 55 0.0019 24.8 5.6 45 71-115 38-96 (305)
31 3qas_B Undecaprenyl pyrophosph 39.8 72 0.0025 24.7 6.2 59 64-122 43-118 (253)
32 1ece_A Endocellulase E1; glyco 38.7 94 0.0032 23.7 6.8 20 72-91 47-66 (358)
33 3sgv_B Undecaprenyl pyrophosph 38.1 44 0.0015 26.0 4.7 59 64-122 43-118 (253)
34 1i60_A IOLI protein; beta barr 37.5 39 0.0013 24.5 4.2 44 72-115 17-66 (278)
35 2zds_A Putative DNA-binding pr 37.2 78 0.0027 23.7 6.0 44 72-115 18-71 (340)
36 1bgv_A Glutamate dehydrogenase 36.9 24 0.00081 29.7 3.2 57 61-118 207-263 (449)
37 3ur8_A Glucan endo-1,3-beta-D- 35.8 54 0.0018 26.2 5.0 36 72-112 18-53 (323)
38 2g0w_A LMO2234 protein; putati 35.6 63 0.0022 24.1 5.2 44 72-115 39-88 (296)
39 1v9l_A Glutamate dehydrogenase 35.4 56 0.0019 27.2 5.2 58 62-120 188-245 (421)
40 2zvr_A Uncharacterized protein 35.3 55 0.0019 24.2 4.8 46 71-116 43-89 (290)
41 4fcc_A Glutamate dehydrogenase 34.7 47 0.0016 27.9 4.7 58 61-119 212-269 (450)
42 1leh_A Leucine dehydrogenase; 34.6 40 0.0014 27.2 4.1 56 63-119 150-206 (364)
43 1k77_A EC1530, hypothetical pr 34.2 41 0.0014 24.3 3.8 43 72-115 18-60 (260)
44 3mw9_A GDH 1, glutamate dehydr 33.2 56 0.0019 28.0 4.9 59 61-119 213-278 (501)
45 3l23_A Sugar phosphate isomera 32.1 56 0.0019 24.7 4.4 44 72-115 32-79 (303)
46 2tmg_A Protein (glutamate dehy 30.8 57 0.0019 27.0 4.5 56 62-120 187-245 (415)
47 4h8e_A Undecaprenyl pyrophosph 30.3 1.5E+02 0.005 23.1 6.5 59 64-122 50-125 (256)
48 2bma_A Glutamate dehydrogenase 30.0 36 0.0012 28.8 3.2 56 62-118 230-285 (470)
49 3eo4_A Uncharacterized protein 29.7 1.1E+02 0.0039 19.6 6.8 50 61-114 103-152 (164)
50 2x06_A L-sulfolactate dehydrog 29.2 2.2E+02 0.0076 22.8 10.4 78 49-127 72-152 (344)
51 2yfq_A Padgh, NAD-GDH, NAD-spe 29.2 28 0.00095 28.9 2.3 55 62-119 190-246 (421)
52 2cyg_A Beta-1, 3-glucananse; e 29.1 82 0.0028 24.9 5.0 34 74-112 18-51 (312)
53 3cwf_A Alkaline phosphatase sy 28.8 33 0.0011 22.2 2.3 19 31-49 46-64 (122)
54 3lvf_P GAPDH 1, glyceraldehyde 28.7 46 0.0016 27.0 3.5 34 85-119 4-39 (338)
55 1aq0_A 1,3-1,4-beta-glucanase; 28.5 81 0.0028 24.9 4.9 36 72-112 16-51 (306)
56 3pzj_A Probable acetyltransfer 28.0 1.5E+02 0.005 20.3 6.7 49 61-113 132-180 (209)
57 3ktc_A Xylose isomerase; putat 27.9 1.3E+02 0.0045 22.8 6.0 45 72-116 36-82 (333)
58 1vhs_A Similar to phosphinothr 27.8 1.3E+02 0.0046 19.8 6.3 50 61-114 94-143 (175)
59 3g9k_S Capsule biosynthesis pr 27.6 41 0.0014 24.5 2.8 18 34-51 2-19 (177)
60 2yh5_A DAPX protein, BAMC; lip 27.5 58 0.002 22.4 3.4 30 19-48 74-103 (127)
61 1ghs_A 1,3-beta-glucanase; hyd 27.5 77 0.0026 25.0 4.6 35 73-112 17-51 (306)
62 1ex9_A Lactonizing lipase; alp 27.4 1.5E+02 0.005 22.1 6.1 58 65-125 55-112 (285)
63 2qul_A D-tagatose 3-epimerase; 26.4 70 0.0024 23.3 4.0 44 72-115 20-67 (290)
64 3lmz_A Putative sugar isomeras 25.9 1.2E+02 0.004 22.0 5.1 45 71-115 32-81 (257)
65 3cny_A Inositol catabolism pro 25.3 80 0.0027 23.1 4.2 41 72-114 34-74 (301)
66 2jlm_A Putative phosphinothric 25.0 1.6E+02 0.0054 19.7 7.0 49 61-113 103-151 (182)
67 2ge3_A Probable acetyltransfer 24.9 1.4E+02 0.0049 19.2 6.7 52 61-116 98-149 (170)
68 3cqj_A L-ribulose-5-phosphate 24.8 70 0.0024 23.6 3.7 44 72-115 33-86 (295)
69 1on0_A YYCN protein; structura 24.7 99 0.0034 20.1 4.2 48 61-112 101-148 (158)
70 3r3j_A Glutamate dehydrogenase 24.2 27 0.00092 29.5 1.4 56 62-118 217-272 (456)
71 3i0p_A Malate dehydrogenase; a 23.6 2.9E+02 0.0099 22.2 10.9 87 40-127 69-159 (365)
72 1rfm_A L-sulfolactate dehydrog 23.3 2.9E+02 0.0098 22.1 10.0 78 49-127 72-152 (344)
73 1yx1_A Hypothetical protein PA 22.5 99 0.0034 22.5 4.1 44 72-115 26-71 (264)
74 1m6i_A Programmed cell death p 22.3 82 0.0028 25.7 4.0 46 84-129 10-57 (493)
75 1v9n_A Malate dehydrogenase; r 22.3 3.1E+02 0.01 22.1 11.7 87 40-127 73-163 (360)
76 2j8m_A Acetyltransferase PA486 22.3 1.7E+02 0.0057 19.0 7.2 50 61-114 95-144 (172)
77 3tva_A Xylose isomerase domain 22.3 1.3E+02 0.0044 22.0 4.8 44 72-115 24-71 (290)
78 1mp9_A Tata-binding protein; t 22.0 1.9E+02 0.0064 21.4 5.6 42 40-84 56-97 (198)
79 4h8a_A Ureidoglycolate dehydro 21.8 3.1E+02 0.01 21.9 11.7 87 40-127 64-154 (339)
80 1wtj_A Ureidoglycolate dehydro 21.6 3.1E+02 0.011 21.9 10.9 87 40-127 72-162 (343)
81 3uoe_A Dehydrogenase; structur 21.4 3.2E+02 0.011 22.0 10.3 79 48-127 94-175 (357)
82 3v1y_O PP38, glyceraldehyde-3- 21.3 76 0.0026 25.7 3.5 32 85-117 3-36 (337)
83 3pp9_A Putative streptothricin 21.2 1.8E+02 0.0062 19.0 6.9 51 61-115 113-163 (187)
84 1z2i_A Malate dehydrogenase; s 21.1 3.2E+02 0.011 21.9 11.4 79 48-127 80-161 (358)
85 1nxu_A Hypothetical oxidoreduc 21.0 3.1E+02 0.011 21.7 11.7 87 40-127 62-152 (333)
86 3em5_A Beta-1,3-glucanase; gly 20.9 88 0.003 24.9 3.7 36 72-112 17-52 (316)
87 2ooa_A E3 ubiquitin-protein li 20.6 40 0.0014 20.2 1.2 16 93-108 21-36 (52)
88 1xrh_A Ureidoglycolate dehydro 20.5 3.3E+02 0.011 21.8 10.0 77 50-127 75-154 (351)
89 3p6l_A Sugar phosphate isomera 20.4 1.9E+02 0.0065 20.7 5.3 46 71-116 24-84 (262)
90 1vp8_A Hypothetical protein AF 20.2 1.7E+02 0.0059 22.0 5.0 49 68-119 29-77 (201)
91 3g8w_A Lactococcal prophage PS 20.2 1.8E+02 0.006 18.5 7.2 50 61-114 94-143 (169)
92 1ais_A TBP, protein (tata-bind 20.2 1.7E+02 0.006 21.2 5.0 34 49-84 60-93 (182)
93 2z8u_A Tata-box-binding protei 20.1 1.3E+02 0.0046 22.0 4.4 44 38-84 54-97 (188)
94 2cy2_A TTHA1209, probable acet 20.1 1.7E+02 0.0058 18.3 7.2 52 61-116 101-152 (174)
No 1
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=100.00 E-value=8e-55 Score=313.11 Aligned_cols=116 Identities=70% Similarity=1.137 Sum_probs=114.0
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCCh
Q psy8857 18 KHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGR 97 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr 97 (133)
+++..|++||++|+||||||+||++|++++|+|+|++||||++|+||||||+||++++++++|+|++.|+|+|+|+|+||
T Consensus 2 ~~~~~gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G~Gr 81 (117)
T 3r8n_K 2 KQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGR 81 (117)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSSSST
T ss_pred cccceeEEEEEcccCCEEEEEEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCCccH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 98 ESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 98 ~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
|++|++|+.+|++|.+|+|+||+|||||||||+|||
T Consensus 82 ~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K~RRv 117 (117)
T 3r8n_K 82 ESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117 (117)
T ss_dssp THHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred HHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999997
No 2
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00 E-value=2.7e-54 Score=314.88 Aligned_cols=118 Identities=49% Similarity=0.888 Sum_probs=114.6
Q ss_pred ccceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC
Q psy8857 16 IKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP 95 (133)
Q Consensus 16 ~~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~ 95 (133)
.++++..|++||++|+|||||||||++|++++|+|+|++||||++|+||||||+||++++++|+|+|++.|+|+|+|+|+
T Consensus 10 ~~~~~~~gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G~ 89 (129)
T 2vqe_K 10 VKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGA 89 (129)
T ss_dssp -CCCCSEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCCT
T ss_pred ccccccceEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCC
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 96 GRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 96 Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
|||++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 90 Gre~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K~RRv 127 (129)
T 2vqe_K 90 GREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK 127 (129)
T ss_dssp THHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGCS
T ss_pred CHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999996
No 3
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=4e-53 Score=312.19 Aligned_cols=117 Identities=52% Similarity=0.957 Sum_probs=114.5
Q ss_pred cceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCC
Q psy8857 17 KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPG 96 (133)
Q Consensus 17 ~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~G 96 (133)
++++..|++||++|+|||||||||++|++++|+|+|++||||++|+||||||+++++++++|+|+|++.|+|+|+|+|+|
T Consensus 24 ~k~~~~gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~GfKg~rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G~G 103 (140)
T 3bbn_K 24 ARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLG 103 (140)
T ss_dssp CCCCCCCEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTTSCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCSTT
T ss_pred cccceeeEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcccccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCCCc
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 97 RESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 97 r~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
||++|++|+..|++|.+|+|+||+|||||||||+|||
T Consensus 104 ReaairaL~~~Gl~I~~I~DvTpiPhnGcRppK~RRv 140 (140)
T 3bbn_K 104 RDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 140 (140)
T ss_dssp SSHHHHHHHTTTCEEEEEEECCCCCCSCCCCCCCCCC
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999997
No 4
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.9e-50 Score=293.16 Aligned_cols=115 Identities=48% Similarity=0.774 Sum_probs=109.9
Q ss_pred eeeeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-----
Q psy8857 19 HITEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG----- 92 (133)
Q Consensus 19 ~~~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG----- 92 (133)
+...|++||++|+|||||||||++|+ +++|+|+|++||++++|+||||||+||++++++|+++|++.|+|+|+|
T Consensus 11 ~~~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~ 90 (137)
T 3j20_M 11 KEKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSK 90 (137)
T ss_dssp CCEEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSS
T ss_pred CCcceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCC
Confidence 34799999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred ---CCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCC---CCCCC
Q psy8857 93 ---PGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPS---KRRRV 133 (133)
Q Consensus 93 ---~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k---K~RRv 133 (133)
+|+||+++|++|+.+|++|.+|+|+||+|||||||| |.|||
T Consensus 91 ~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~rr~rrv 137 (137)
T 3j20_M 91 SKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV 137 (137)
T ss_dssp CCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCCSSSSCC
T ss_pred CcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCCCCCCCC
Confidence 799999999999999999999999999999999999 55554
No 5
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=100.00 E-value=7.9e-50 Score=293.66 Aligned_cols=116 Identities=40% Similarity=0.630 Sum_probs=111.4
Q ss_pred cceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCC-CCCHHHHHHHHHHHHHHHHHcCCcEEEEEE-----
Q psy8857 17 KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR-KSTPFAAQVAAESAGKIAIEHGIKNLEVRI----- 90 (133)
Q Consensus 17 ~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~k-k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~----- 90 (133)
+.++..|++||++|+||||||+||++|+++.|+|+|.+|||+.+ |+||||||+||++++++|+++|++.|+|+|
T Consensus 9 ~~~~~~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg 88 (137)
T 3u5c_O 9 DNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGG 88 (137)
T ss_dssp --CCCEEECCEEEETTEEEECCEETTSSSCCCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCT
T ss_pred cCceeeEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCC
Confidence 44678999999999999999999999999999999999999988 899999999999999999999999999999
Q ss_pred ---eCCCCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCC
Q psy8857 91 ---KGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRR 132 (133)
Q Consensus 91 ---kG~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RR 132 (133)
+|+|+|||++|++|+.+|++|.+|+|+||+|||||||||+||
T Consensus 89 ~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K~RR 133 (137)
T 3u5c_O 89 TRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133 (137)
T ss_dssp TSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTTCTT
T ss_pred CcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCCCC
Confidence 799999999999999999999999999999999999999988
No 6
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=100.00 E-value=1.5e-47 Score=285.42 Aligned_cols=116 Identities=38% Similarity=0.564 Sum_probs=107.4
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCC-CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCC---
Q psy8857 18 KHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR-KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGP--- 93 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~k-k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~--- 93 (133)
.++..|++||++|+|||||||||++|+++.|+|+|.++|++.+ |+||||||+||++++++|+++||+.|+|+|+|+
T Consensus 24 ~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg~ 103 (151)
T 2xzm_K 24 NENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGV 103 (151)
T ss_dssp TCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCTT
T ss_pred CCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCCC
Confidence 4577899999999999999999999997777677666666554 999999999999999999999999999999977
Q ss_pred -----CCChHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857 94 -----GPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133 (133)
Q Consensus 94 -----G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv 133 (133)
|+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 104 ~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K~RRv 148 (151)
T 2xzm_K 104 ETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRG 148 (151)
T ss_dssp SCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSSCTTC
T ss_pred CccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999996
No 7
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=97.69 E-value=0.00014 Score=51.29 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=68.9
Q ss_pred eeEEEEEcccCCeEEEEEcCCC-CeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC-CCh-H
Q psy8857 22 EGVAHIHASFNNTIITITDRKG-CTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG-PGR-E 98 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd~~G-~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G-~Gr-~ 98 (133)
.+.|.|+.|.+++...+.|..| .++.+.|+=-..++ .+...||+.+++.++++|.+.||+.+..-..|+- .|| +
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k---~~n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~yhGrV~ 99 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK---GNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVK 99 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC---CCHHHHHHHHHHHHHHHHHTTTCCBCEEECTTSCSCSSTT
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc---CCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCcccHHHH
Confidence 7899999999999999998765 57888887766664 4577899999999999999999999866544532 256 6
Q ss_pred HHHHHHhhcCce
Q psy8857 99 SSVRALNNLGIK 110 (133)
Q Consensus 99 ~~lk~L~~~gl~ 110 (133)
++..++.+.||+
T Consensus 100 Ala~~are~GL~ 111 (112)
T 3v2d_S 100 ALAEGAREGGLE 111 (112)
T ss_dssp HHHHHHHHTTCB
T ss_pred HHHHHHHHcCCC
Confidence 677888888875
No 8
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=97.62 E-value=0.0004 Score=49.08 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=71.0
Q ss_pred eeeeEEEEEcccCCeEEEEEcCC-CCeEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC-
Q psy8857 20 ITEGVAHIHASFNNTIITITDRK-GCTLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP- 95 (133)
Q Consensus 20 ~~~~il~I~~t~NNTiitlTd~~-G~~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~- 95 (133)
...+.|.|+.|.+++...+.|.. |.++++.|+=-..+++. ......||+.+++.+++.|.+.||+.+..--.|+=+
T Consensus 20 ~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yh 99 (116)
T 3r8s_O 20 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH 99 (116)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTSCSS
T ss_pred CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCccc
Confidence 35689999999999999999965 55888888776666653 346788999999999999999999988766555422
Q ss_pred Ch-HHHHHHHhhcCce
Q psy8857 96 GR-ESSVRALNNLGIK 110 (133)
Q Consensus 96 Gr-~~~lk~L~~~gl~ 110 (133)
|| +++..++.+.||+
T Consensus 100 GrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 100 GRVQALADAAREAGLQ 115 (116)
T ss_dssp SHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 55 4556677778875
No 9
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=97.49 E-value=0.00015 Score=51.70 Aligned_cols=89 Identities=24% Similarity=0.199 Sum_probs=66.4
Q ss_pred eeEEEEEcccCCeEEEEEcCCC-CeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC-CCh-H
Q psy8857 22 EGVAHIHASFNNTIITITDRKG-CTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG-PGR-E 98 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd~~G-~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G-~Gr-~ 98 (133)
.+.|.|+.|.++++..+.|..| .++++.|+=-..|+........||+.+++.+++.|.+.|++.+.+-..|+= -|| .
T Consensus 28 rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhgrV~ 107 (120)
T 1ovy_A 28 RPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVK 107 (120)
T ss_dssp CCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCCSTTCSSCSSTH
T ss_pred CCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhCcCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccHHHH
Confidence 4789999999999999998765 578887775555552235678899999999999999999997644333322 245 5
Q ss_pred HHHHHHhhcCce
Q psy8857 99 SSVRALNNLGIK 110 (133)
Q Consensus 99 ~~lk~L~~~gl~ 110 (133)
+++.++.+.||+
T Consensus 108 ala~~are~GL~ 119 (120)
T 1ovy_A 108 ALADAAREAGLE 119 (120)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCc
Confidence 667777777764
No 10
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=97.22 E-value=0.0023 Score=48.73 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=67.7
Q ss_pred eeeEEEEEcccCCeEEEEE--cCCCC-eEEeeecceeeec-C--CCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC
Q psy8857 21 TEGVAHIHASFNNTIITIT--DRKGC-TLSWASSGSVNFK-G--SRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG 94 (133)
Q Consensus 21 ~~~il~I~~t~NNTiitlT--d~~G~-~l~~~S~G~~gfK-g--~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G 94 (133)
..+.|.|+.|.+++++.+. |..|. ++++.|+=-.. + + .......||+.+++.++++|.+.|++.+.+-..|+=
T Consensus 31 ~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrgg~~ 109 (187)
T 1vq8_N 31 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNS 109 (187)
T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSC
T ss_pred CCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEcCCCce
Confidence 3588999999999999999 66555 78877775543 3 1 124678899999999999999999998754444421
Q ss_pred -C--Ch-HHHHHHHhhcCceE
Q psy8857 95 -P--GR-ESSVRALNNLGIKI 111 (133)
Q Consensus 95 -~--Gr-~~~lk~L~~~gl~I 111 (133)
. || .++++++...||++
T Consensus 110 yh~GgRV~Ala~gAre~GL~f 130 (187)
T 1vq8_N 110 PTPGSKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp CCTTCHHHHHHHHHHHTTCBC
T ss_pred eccchHHHHHHHHhhcCCEec
Confidence 1 56 66788888899864
No 11
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=97.17 E-value=0.0002 Score=50.64 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=64.0
Q ss_pred eeeeEEEEEcccCCeEEEEEcCCCC-eEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC-CCh
Q psy8857 20 ITEGVAHIHASFNNTIITITDRKGC-TLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG-PGR 97 (133)
Q Consensus 20 ~~~~il~I~~t~NNTiitlTd~~G~-~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G-~Gr 97 (133)
...+.|.|+.|.++++..+.|..|. ++++.|+=- + .......||+.+++.+++++.+.|++.+.+-..|+= -||
T Consensus 24 ~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l--~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yhgr 99 (114)
T 2zjr_L 24 SGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L--KSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGR 99 (114)
T ss_dssp TCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C--CTTCSSSSHHHHHHHHHHHHHTTCCCCCEECCCSSCSCSH
T ss_pred CCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h--cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCccccHH
Confidence 4457899999999999999987765 777666544 3 234567789999999999999999998765544433 355
Q ss_pred -HHHHHHHhhcCce
Q psy8857 98 -ESSVRALNNLGIK 110 (133)
Q Consensus 98 -~~~lk~L~~~gl~ 110 (133)
++++.++.+.||+
T Consensus 100 V~Ala~~are~GL~ 113 (114)
T 2zjr_L 100 VKALADAAREGGLD 113 (114)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCc
Confidence 5567777788875
No 12
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.84 E-value=0.001 Score=51.21 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=73.5
Q ss_pred eeEEEEEcccCCeEEEEEc--CC-CCeEEeeecceeeec-C--CCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCC
Q psy8857 22 EGVAHIHASFNNTIITITD--RK-GCTLSWASSGSVNFK-G--SRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGP 95 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd--~~-G~~l~~~S~G~~gfK-g--~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~ 95 (133)
.+.|.|+.|.+++++.+.| .. |.++++.|+=-+..+ + .......||+.++..++++|.+.|+..+.+-..|+-.
T Consensus 32 kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrgg~~y 111 (203)
T 3j21_O 32 KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILDIGLHPP 111 (203)
T ss_dssp CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEECCSSCC
T ss_pred CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecCccee
Confidence 5889999999999999996 66 458887776554422 2 2345778899999999999999999988766566543
Q ss_pred ---Ch-HHHHHHHhhcCceEEEEEecCCCCCCCCCCC
Q psy8857 96 ---GR-ESSVRALNNLGIKITQIEDVTPIPHNGCRPS 128 (133)
Q Consensus 96 ---Gr-~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k 128 (133)
|| .+++++....||+ +||+--|-|
T Consensus 112 ~~hgRV~Ala~gAre~GL~---------iPhs~~~fp 139 (203)
T 3j21_O 112 VRGSSVFAVLKGAVDAGLN---------VPHSPEIFP 139 (203)
T ss_dssp CTTSHHHHHHHHHHHHTCC---------CCCCSSCSC
T ss_pred ccCcchhhhhhhcccCCee---------cccCCccCC
Confidence 66 6678888888985 477655443
No 13
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.63 E-value=0.0014 Score=48.86 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=67.0
Q ss_pred eeEEEEEcccCCeEEEEEcCC-CCeEEeeecceeeecC----CCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCC-C
Q psy8857 22 EGVAHIHASFNNTIITITDRK-GCTLSWASSGSVNFKG----SRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPG-P 95 (133)
Q Consensus 22 ~~il~I~~t~NNTiitlTd~~-G~~l~~~S~G~~gfKg----~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G-~ 95 (133)
.+.|.|+-|.+++...|.|.. |.++...|+=-..+++ ...+.-.||..+++.++++|++.||+.|..--.|+= .
T Consensus 65 rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFDRgg~~Yh 144 (161)
T 3bbo_Q 65 RPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPYH 144 (161)
T ss_dssp CCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCCCSSSCSS
T ss_pred CCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcch
Confidence 468999999999999998765 5688888874433332 235778899999999999999999999755434432 2
Q ss_pred Ch-HHHHHHHhhcCce
Q psy8857 96 GR-ESSVRALNNLGIK 110 (133)
Q Consensus 96 Gr-~~~lk~L~~~gl~ 110 (133)
|| +++..++.+.||+
T Consensus 145 GRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 145 GRVKALADAAREKGLQ 160 (161)
T ss_dssp STTHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhCCc
Confidence 56 5667778888875
No 14
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=96.07 E-value=0.052 Score=43.85 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=73.3
Q ss_pred cceeeeeEEEEEcccCCeEEEEEcCC--CC-eEEeeeccee---eecCCCCCCHHHHHHHHHHHHHHHHHc---------
Q psy8857 17 KKHITEGVAHIHASFNNTIITITDRK--GC-TLSWASSGSV---NFKGSRKSTPFAAQVAAESAGKIAIEH--------- 81 (133)
Q Consensus 17 ~~~~~~~il~I~~t~NNTiitlTd~~--G~-~l~~~S~G~~---gfKg~kk~t~~Aa~~aa~~~~~~~~~~--------- 81 (133)
|.+-..+.|.|+.|..++++.+.|.. |. +++..|+=-+ |+++. -....||+.++..+++.+.+.
T Consensus 43 kynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g-~tN~aAAy~tGlLlArRal~k~~ld~~y~G 121 (297)
T 2zkr_n 43 KYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVG-LTNYAAAYCTGLLLARRLLNRFGMDKIYEG 121 (297)
T ss_dssp TCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSC-SSSHHHHHHHHHHHHHHHHCCCSCCCCCSS
T ss_pred ccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccC-CCcHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 34455688999999999999999977 54 7777776443 23322 356788999999999999987
Q ss_pred ------------------CCcEEEEEEeCCCC---Ch-HHHHHHHhhcCceEEEEEecCCCCCCCCCCC
Q psy8857 82 ------------------GIKNLEVRIKGPGP---GR-ESSVRALNNLGIKITQIEDVTPIPHNGCRPS 128 (133)
Q Consensus 82 ------------------gi~~v~v~~kG~G~---Gr-~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k 128 (133)
|+..+.+=.-|.=. || .+++++....||. +||+-.|-|
T Consensus 122 ~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVfa~akGArDgGL~---------~Phs~~~fp 181 (297)
T 2zkr_n 122 QVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLS---------IPHSTKRFP 181 (297)
T ss_dssp CCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCB---------CCCCGGGSC
T ss_pred ccccccccccccccccCCCceEEEEecCCcccCCCchHHHHHHHHHhcCcc---------cCCCCccCC
Confidence 66766555444433 45 5678888888986 478766544
No 15
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=94.69 E-value=0.17 Score=40.94 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=71.1
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcC--CC-CeEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHc--------CCc
Q psy8857 18 KHITEGVAHIHASFNNTIITITDR--KG-CTLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEH--------GIK 84 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~--~G-~~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~--------gi~ 84 (133)
.+-..+.|.|+-|..++++.|.|. .| .+|++.|+=-+...+- .-....||+.++..+++++.+. |+.
T Consensus 44 ynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~ 123 (301)
T 4a17_M 44 YNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQT 123 (301)
T ss_dssp CSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCS
T ss_pred cCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcc
Confidence 345568899999999999999997 56 6888887755532232 2446788999999999999987 765
Q ss_pred E-----------------EEEEEe-C---CCC-Ch-HHHHHHHhhcCceEEEEEecCCCCCCCCCCC
Q psy8857 85 N-----------------LEVRIK-G---PGP-GR-ESSVRALNNLGIKITQIEDVTPIPHNGCRPS 128 (133)
Q Consensus 85 ~-----------------v~v~~k-G---~G~-Gr-~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k 128 (133)
. ...+|- | .-. +| .+++++....||. |||+--|-|
T Consensus 124 e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVfaalKGA~DgGL~---------IPhs~~~fp 181 (301)
T 4a17_M 124 KVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGIN---------IPHSESRFP 181 (301)
T ss_dssp SCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHHHHHHHHHHTTCB---------CCCCSSSSS
T ss_pred ccccceeecccccCCCCceEEEEecCCcccCcccchhhhhhcccccCcc---------cCCCCccCC
Confidence 2 123332 2 211 34 6678888889986 588765544
No 16
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=94.56 E-value=0.22 Score=40.22 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=70.4
Q ss_pred ceeeeeEEEEEcccCCeEEEEEcC--CC-CeEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHc--------CCc
Q psy8857 18 KHITEGVAHIHASFNNTIITITDR--KG-CTLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEH--------GIK 84 (133)
Q Consensus 18 ~~~~~~il~I~~t~NNTiitlTd~--~G-~~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~--------gi~ 84 (133)
.+-..+.|.|+.|..++++.+.|. .| .+|++.|+=-+...|- .-....||+.++..+++.+.+. |+.
T Consensus 44 ynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~ 123 (297)
T 3u5e_D 44 YNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVE 123 (297)
T ss_dssp TTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCS
T ss_pred cCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcc
Confidence 344567899999999999999997 45 5888877755532232 2446788999999999999987 665
Q ss_pred EE-----------------EEEEe-C---C--CCCh-HHHHHHHhhcCceEEEEEecCCCCCCCCCCC
Q psy8857 85 NL-----------------EVRIK-G---P--GPGR-ESSVRALNNLGIKITQIEDVTPIPHNGCRPS 128 (133)
Q Consensus 85 ~v-----------------~v~~k-G---~--G~Gr-~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k 128 (133)
.+ ..+|- | . | +| .+++++....||. |||+--|-|
T Consensus 124 e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG-~RVfaalKGA~DgGL~---------IPhs~~~fp 181 (297)
T 3u5e_D 124 EVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTG-ARVFGALKGASDGGLY---------VPHSENRFP 181 (297)
T ss_dssp SCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTT-CSHHHHHHHHHHHTCB---------CCCCSTTSS
T ss_pred ccccceeccccccCCCCceeEEEecCCCccCcc-ceehhhhhcccccCcc---------cCCCccccc
Confidence 41 13332 2 2 3 23 6788888888986 588765544
No 17
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=84.32 E-value=3 Score=33.68 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=62.4
Q ss_pred ccCCeEEEEEcC--CC-CeEEeeecceeeecCC--CCCCHHHHHHHHHHHHHHHHHc--------CCcEEE---------
Q psy8857 30 SFNNTIITITDR--KG-CTLSWASSGSVNFKGS--RKSTPFAAQVAAESAGKIAIEH--------GIKNLE--------- 87 (133)
Q Consensus 30 t~NNTiitlTd~--~G-~~l~~~S~G~~gfKg~--kk~t~~Aa~~aa~~~~~~~~~~--------gi~~v~--------- 87 (133)
|..++++.|.|. .| .+++..|+=-+...|- .-....||+.++..+++++.+. |+..+.
T Consensus 57 SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~~ 136 (304)
T 3iz5_Q 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPA 136 (304)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCCS
T ss_pred cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceeccccc
Confidence 888999999986 56 6888887766543342 2346678999999999999987 766411
Q ss_pred -------EEEe-C---CCC-Ch-HHHHHHHhhcCceEEEEEecCCCCCCCCCCC
Q psy8857 88 -------VRIK-G---PGP-GR-ESSVRALNNLGIKITQIEDVTPIPHNGCRPS 128 (133)
Q Consensus 88 -------v~~k-G---~G~-Gr-~~~lk~L~~~gl~I~~I~D~TpiphnGcR~k 128 (133)
.+|- | .-. +| .+++++....||. |||+--|-|
T Consensus 137 ~~~~~f~~~LDiGL~rtttG~RVfaalKGA~DgGL~---------IPhs~~~fp 181 (304)
T 3iz5_Q 137 DERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLD---------IPHSDKRFA 181 (304)
T ss_dssp SCSCCCSCEEECTTCCCCSSCHHHHHHHHHHTTTCC---------CCCCSSSCC
T ss_pred CCCCCceEEEecCCcccccCceeEEeeccccccCcc---------cCCCccccc
Confidence 3332 2 222 33 5678888888986 588866655
No 18
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=55.26 E-value=38 Score=21.56 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIP 121 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tpip 121 (133)
++.-++.. +.+.+.+.+.+.|+..|.+.+.-. -..+++...+.|+........++-|
T Consensus 101 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~~~---n~~a~~~y~k~GF~~~~~~~~~~~~ 157 (164)
T 4e0a_A 101 RGGGIGRL-IFEAIISYGKAHQVDAIELDVYDF---NDRAKAFYHSLGMRCQKQTMELPLL 157 (164)
T ss_dssp CSSSHHHH-HHHHHHHHHHHTTCSEEEEEEETT---CHHHHHHHHHTTCEEEEEEEEEECC
T ss_pred hcCChHHH-HHHHHHHHHHHcCCCEEEEEEEcC---CHHHHHHHHHcCCEEeceeccCCcc
Confidence 44444444 446778888999999999987643 3567788888999876666555544
No 19
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=48.96 E-value=26 Score=29.18 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
..|-|....+++.+++.. ...++...|.+.|+|.=-..+.+.|.+.|.+|+.|.|.+
T Consensus 195 ~aTg~Gv~~~~~~~~~~~-g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~ 251 (419)
T 3aoe_E 195 DAAGLGALLVLEALAKRR-GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSM 251 (419)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cchHHHHHHHHHHHHHhc-CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 345555555555555442 223456778999998655566688888899999999985
No 20
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=48.26 E-value=17 Score=30.41 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
..|-|....+++.+++.. ...+....|.+.|+|.=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 198 ~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G 255 (424)
T 3k92_A 198 TATAQGVTICIEEAVKKK-GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANG 255 (424)
T ss_dssp THHHHHHHHHHHHHHHHT-TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSC
T ss_pred ccHHHHHHHHHHHHHHHc-CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 345555555555554432 2345667899999986445566777778999999999873
No 21
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=47.06 E-value=37 Score=22.02 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEEeCC
Q psy8857 65 FAAQVAAESAGKIAIEHGIKNLEVRIKGP 93 (133)
Q Consensus 65 ~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~ 93 (133)
+-|....+-++..++.+|++.+.|.++|.
T Consensus 60 eqakelleliarllqklgykdinvrvngt 88 (96)
T 2jvf_A 60 EQAKELLELIARLLQKLGYKDINVRVNGT 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEcCE
Confidence 44555667788888999999999999985
No 22
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=46.72 E-value=14 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++....+....+.+.+.|...|+.|.++.
T Consensus 41 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~gl~v~~~~ 84 (287)
T 3kws_A 41 NEKLDFMEKLGVVGFEPGGGGLAGRVNEIKQALNGRNIKVSAIC 84 (287)
T ss_dssp HHHHHHHHHTTCCEEECBSTTCGGGHHHHHHHHTTSSCEECEEE
T ss_pred HHHHHHHHHcCCCEEEecCCchHHHHHHHHHHHHHcCCeEEEEe
Confidence 56788889999999998877554334455566678899988774
No 23
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=45.48 E-value=45 Score=24.14 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCcEEEEEEeCC------CCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGP------GPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~------G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++....+ +...+.+-+.+...|+.|.++.
T Consensus 22 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 71 (272)
T 2q02_A 22 EAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTIN 71 (272)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEech
Confidence 5677888899999999975322 2234455566788999998885
No 24
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=44.95 E-value=30 Score=29.04 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
..|-|....+++.+++.. ...++...|.+.|||.=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 212 ~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G 269 (440)
T 3aog_A 212 DATGRGVFITAAAAAEKI-GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTG 269 (440)
T ss_dssp THHHHHHHHHHHHHHHHH-TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred cchHHHHHHHHHHHHHhc-CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 345555555555555442 2235567888999986445566888888999999999864
No 25
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=43.97 E-value=54 Score=25.95 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh--H---HH-----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 65 FAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR--E---SS-----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 65 ~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr--~---~~-----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
.++..+...+.+.|.++||+.|.|+- ..-+..| + .. +..|...++.|.-|.|...+|-
T Consensus 82 ~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvrviG~~~~lp~ 156 (284)
T 2vg3_A 82 KMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWR 156 (284)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESCCTTSCH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEeCChhhCCH
Confidence 35556777888999999999999997 3323233 1 11 1223457889999999888773
No 26
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=43.59 E-value=41 Score=25.42 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCC---------hHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPG---------RESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~G---------r~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++.+..+.+. .+.+-+.|...|+.|.++.
T Consensus 38 ~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~ 90 (316)
T 3qxb_A 38 RLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTF 90 (316)
T ss_dssp HHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEEEee
Confidence 4456778899999999987765542 2334455688999998874
No 27
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=43.02 E-value=36 Score=25.03 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEE
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
.+..++.+.++|+..|++... .+...+.+-+.|...|+++.++.
T Consensus 25 ~~~~l~~~~~~G~~~vEl~~~-~~~~~~~~~~~l~~~gl~~~~~~ 68 (269)
T 3ngf_A 25 FLERFRLAAEAGFGGVEFLFP-YDFDADVIARELKQHNLTQVLFN 68 (269)
T ss_dssp HHHHHHHHHHTTCSEEECSCC-TTSCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEecCC-ccCCHHHHHHHHHHcCCcEEEEe
Confidence 356788899999999999763 23345556667788999998876
No 28
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=41.41 E-value=58 Score=25.10 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh-----HHH-----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 65 FAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR-----ESS-----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 65 ~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr-----~~~-----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
.++..+...+.+.|.++||+.|.|+- ..-+-.| +.. +..|...|+.|.-|.|...+|.
T Consensus 42 ~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~~~~l~~~~vrl~~iG~~~~lp~ 116 (245)
T 2d2r_A 42 KKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSK 116 (245)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEecChhhCCH
Confidence 45566778888999999999999987 2222233 111 1223457899999999988874
No 29
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=40.71 E-value=58 Score=25.12 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CC-------------CChHHH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRIKG-PG-------------PGRESS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G-------------~Gr~~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
..++..+...+.+.|.++||+.|.|+-=. -+ .-++.+ +..|...|+.|.-|.|...+|.
T Consensus 46 H~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~~~~l~~~~vr~~~iG~~~~lp~ 121 (249)
T 1f75_A 46 HYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPD 121 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHHHHHHHHHHTTCEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEeCChhhCCH
Confidence 34556677888899999999999999821 11 111222 2234567899999999988874
No 30
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=39.85 E-value=55 Score=24.83 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCcEEEEEEeC------CCC--------ChHHHHHHHhhcCceEEEEE
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKG------PGP--------GRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG------~G~--------Gr~~~lk~L~~~gl~I~~I~ 115 (133)
.+.+++.+.++|+..|++.... ++. ..+.+-+.|...|+.|.++.
T Consensus 38 l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~ 96 (305)
T 3obe_A 38 MPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISSSH 96 (305)
T ss_dssp HHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEEEB
T ss_pred HHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEEee
Confidence 4678889999999999998641 122 33455566788999998883
No 31
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=39.84 E-value=72 Score=24.70 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCCh-------------HHH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGR-------------ESS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr-------------~~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
..++..+...+.+.|.++||+.|.|+-=. -+-.| +.+ +..|...|+.|.-|.|...+|.
T Consensus 43 H~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~~l~~~~~~l~~~~vrlr~iG~~~~lp~ 118 (253)
T 3qas_B 43 HKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNS 118 (253)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CTHHHHHHHHHHHTTCEEEEESCCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCeEEEEeCChHhCCH
Confidence 34556677888899999999999998621 11112 222 2335567899999999998873
No 32
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Probab=38.71 E-value=94 Score=23.73 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCcEEEEEEe
Q psy8857 72 ESAGKIAIEHGIKNLEVRIK 91 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~k 91 (133)
+..++.++++|+..|++-+.
T Consensus 47 ~~~~~~~~~~G~n~vRi~~~ 66 (358)
T 1ece_A 47 RSMLDQIKSLGYNTIRLPYS 66 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeecc
Confidence 56778888999999999985
No 33
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=38.09 E-value=44 Score=26.02 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh-----HHH-----------HHHHhhcCceEEEEEecCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR-----ESS-----------VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr-----~~~-----------lk~L~~~gl~I~~I~D~Tpiph 122 (133)
..++..+...+.+.|.++|++.|.|+. .--+-.| +.. +..|.+.|+.|.-|-|...+|-
T Consensus 43 H~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~~~Lp~ 118 (253)
T 3sgv_B 43 HKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNS 118 (253)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTTHHHHHHHHHHTTCEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCeEEEEEeehhhCCH
Confidence 456666778888999999999999984 1111112 111 2234567899999999998874
No 34
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=37.55 E-value=39 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCcEEEEE-EeCC-----CCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVR-IKGP-----GPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~-~kG~-----G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++. ...+ ....+.+-+.|...|+.+.++.
T Consensus 17 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 66 (278)
T 1i60_A 17 KLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALN 66 (278)
T ss_dssp HHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeec
Confidence 556778888999999988 5432 2234455566678899888764
No 35
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=37.20 E-value=78 Score=23.74 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCC----------hHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPG----------RESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~G----------r~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++...+.... .+.+.+.|...|+.|.++.
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 71 (340)
T 2zds_A 18 EEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAIS 71 (340)
T ss_dssp HHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEEEee
Confidence 5677888899999999986421111 2344556688999998874
No 36
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=36.95 E-value=24 Score=29.71 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
..|-|....+++.+++.. ...++...|.+.|+|.=-..+.+.|.+.|.+|+.|.|.+
T Consensus 207 ~aTg~Gv~~~~~~~~~~~-G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~ 263 (449)
T 1bgv_A 207 EATGYGSVYYVEAVMKHE-NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD 263 (449)
T ss_dssp THHHHHHHHHHHHHHHHT-TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred cchhHHHHHHHHHHHHHc-cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 345455555555554433 133466788999998633344477777899999999964
No 37
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=35.83 E-value=54 Score=26.24 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
+.+.+.++..|+..|+|+ +.. ..+|.+|...|+++.
T Consensus 18 ~~Vv~llks~gi~~VRlY--~~D---~~vL~Al~~sgi~V~ 53 (323)
T 3ur8_A 18 QDVIKLYNANNIKKMRIY--YPH---TNVFNALKGSNIEII 53 (323)
T ss_dssp HHHHHHHHHTTCCEEEES--SCC---HHHHHHHTTCCCEEE
T ss_pred HHHHHHHHhCCCCeEEec--CCC---HHHHHHHHhcCCeEE
Confidence 445666778899988887 333 689999998998854
No 38
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=35.58 E-value=63 Score=24.11 Aligned_cols=44 Identities=27% Similarity=0.479 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCcEEEEEEeC------CCCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKG------PGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG------~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+.++|+..|++.+.. .+...+.+-+.|...|+.|.++.
T Consensus 39 ~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 88 (296)
T 2g0w_A 39 PKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVE 88 (296)
T ss_dssp HHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEeeh
Confidence 567788899999999998642 23344556667788999999876
No 39
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=35.40 E-value=56 Score=27.16 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tpi 120 (133)
.|-|....+++.+++.. ...+....|.+.|+|-=-..+.+.|.+.|.+|+.|.|..-.
T Consensus 188 aTg~Gv~~~~~~~~~~~-g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~ 245 (421)
T 1v9l_A 188 ATGFGVAVATREMAKKL-WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGV 245 (421)
T ss_dssp HHHHHHHHHHHHHHHHH-HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCE
T ss_pred chHHHHHHHHHHHHHhc-CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcE
Confidence 45555555555555542 23555678899999853344457777789999999998643
No 40
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=35.31 E-value=55 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCCC-CChHHHHHHHhhcCceEEEEEe
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGPG-PGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~G-~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
.+.+++.+.++|+..|++....+. ...+.+.+.|...|+.+.++.-
T Consensus 43 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 89 (290)
T 2zvr_A 43 LRKGMELAKRVGYQAVEIAVRDPSIVDWNEVKILSEELNLPICAIGT 89 (290)
T ss_dssp HHHHHHHHHHHTCSEEEEECSCGGGSCHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEcCCCcchhhHHHHHHHHHHcCCeEEEEec
Confidence 456788889999999999875432 2345566667889999988753
No 41
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=34.70 E-value=47 Score=27.95 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
..|-|....+++.+++.. ..++....|.+.|+|.=-..+.+-|.+.|-+|+.+.|.+-
T Consensus 212 ~aTg~Gv~~~~~~~~~~~-~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G 269 (450)
T 4fcc_A 212 EATGYGLVYFTEAMLKRH-GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSG 269 (450)
T ss_dssp THHHHHHHHHHHHHHHHT-TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTE
T ss_pred CceeeeHHHHHHHHHHHc-CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence 345555555555555432 3456778899999996445566778888999999988763
No 42
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=34.64 E-value=40 Score=27.25 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 63 TPFAAQVAAESAGKIAIEH-GIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 63 t~~Aa~~aa~~~~~~~~~~-gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
|.+....+++.+++..... .+..-.|.|-|+|.=-..+.+.|.+.|.+|. +.|.++
T Consensus 150 Tg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVv-v~D~~~ 206 (364)
T 1leh_A 150 TAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLV-VTDVNK 206 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSCH
T ss_pred hhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence 3344444444444433111 2455567888998644556677778899988 999764
No 43
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=34.16 E-value=41 Score=24.27 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+.++|+..|++..- .+...+.+-+.|...|+.+.++.
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~-~~~~~~~~~~~l~~~gl~~~~~~ 60 (260)
T 1k77_A 18 IERFAAARKAGFDAVEFLFP-YNYSTLQIQKQLEQNHLTLALFN 60 (260)
T ss_dssp GGHHHHHHHHTCSEEECSCC-TTSCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEecCC-CCCCHHHHHHHHHHcCCceEEEe
Confidence 34567788899999998752 23334555666788999999874
No 44
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=33.22 E-value=56 Score=27.96 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHH---HHHHcCC----cEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 61 KSTPFAAQVAAESAGK---IAIEHGI----KNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~---~~~~~gi----~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
..|-|....+++.+++ .+..+|. ....|.+.|+|.=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 213 eATg~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G 278 (501)
T 3mw9_A 213 SATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDG 278 (501)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred CchHHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4566666666666553 3345664 567899999996445566777778999999999653
No 45
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=32.09 E-value=56 Score=24.71 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCcEEEEEEeC----CCCChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKG----PGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG----~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+.++|+..|++.... .+.-.+.+-+.|...|+.+.++.
T Consensus 32 ~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~~~ 79 (303)
T 3l23_A 32 AANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIISSH 79 (303)
T ss_dssp HHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 567888999999999997532 12224555566788999998875
No 46
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=30.81 E-value=57 Score=27.03 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcC--CcEEEEEEeCCCCChHHHHHHHhh-cCceEEEEEecCCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHG--IKNLEVRIKGPGPGRESSVRALNN-LGIKITQIEDVTPI 120 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~g--i~~v~v~~kG~G~Gr~~~lk~L~~-~gl~I~~I~D~Tpi 120 (133)
.|-|....+++.+++ ++| ++...|.+.|+|.=-..+.+.|.+ .|.+|+.|.|.+-.
T Consensus 187 aTg~Gv~~~~~~~~~---~~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~ 245 (415)
T 2tmg_A 187 ATGRGVKVCAGLAMD---VLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGG 245 (415)
T ss_dssp HHHHHHHHHHHHHHH---HTTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE
T ss_pred chHHHHHHHHHHHHH---HcCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCe
Confidence 444445545454444 355 455788999998533556677777 89999999998643
No 47
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=30.25 E-value=1.5e+02 Score=23.08 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEE-eCCCCCh-------------HHH---HHHHhhcCceEEEEEecCCCCC
Q psy8857 64 PFAAQVAAESAGKIAIEHGIKNLEVRI-KGPGPGR-------------ESS---VRALNNLGIKITQIEDVTPIPH 122 (133)
Q Consensus 64 ~~Aa~~aa~~~~~~~~~~gi~~v~v~~-kG~G~Gr-------------~~~---lk~L~~~gl~I~~I~D~Tpiph 122 (133)
..++..+...+.+.|.++|++.|.|+. .--+..| +.+ +..|.+.|+.|.-|-|...+|-
T Consensus 50 H~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~~~Lp~ 125 (256)
T 4h8e_A 50 HYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPK 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEecCcccCCH
Confidence 456666778888999999999999986 2222222 111 1234567999999999998874
No 48
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=30.04 E-value=36 Score=28.83 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
.|-|....+++.+++.. ...++...|.+.|+|.=-..+.+.|.+.|-+|+.|.|.+
T Consensus 230 aTg~Gv~~~~~~~l~~~-G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~ 285 (470)
T 2bma_A 230 ATGYGLVYFVLEVLKSL-NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSN 285 (470)
T ss_dssp HHHHHHHHHHHHHHHTT-TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETT
T ss_pred cchHHHHHHHHHHHHhc-cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 34444444444444332 123456788999998644556677778899999999964
No 49
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=29.70 E-value=1.1e+02 Score=19.57 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
++.-++.. +.+.+.+.+.++|+..|.+.+.-.+ ..+++.+.+.|+.....
T Consensus 103 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~~~N---~~a~~~y~k~GF~~~g~ 152 (164)
T 3eo4_A 103 WGKHIGRH-SVSLVLKWLKNIGYKKAHARILENN---IRSIKLFESLGFKKTKK 152 (164)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEETTC---HHHHHHHHHTTCEEEEE
T ss_pred cCccHHHH-HHHHHHHHHHhCCCcEEEEEeCCCC---HHHHHHHHHCCCEEEee
Confidence 44445544 4466788889999999999987544 47778888889876553
No 50
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=29.23 E-value=2.2e+02 Score=22.79 Aligned_cols=78 Identities=22% Similarity=0.159 Sum_probs=53.8
Q ss_pred eecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEecCCC--CCCCC
Q psy8857 49 ASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDVTPI--PHNGC 125 (133)
Q Consensus 49 ~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tpi--phnGc 125 (133)
.+..+.-+-+..--.+.++..+.+.+++++++.|+-.|.|.=.+ +|..-..+.++. +.|+--...+...|. ||+|-
T Consensus 72 ~~~a~~~vDg~~g~G~~~~~~a~~~ai~~Ak~~Gi~~v~v~ns~H~G~~g~y~~~aa-~~Gligi~~tn~~p~vaP~Gg~ 150 (344)
T 2x06_A 72 ESPATAVIDGDLGLGQVVGKKAMELAIKKAKNVGVGVVATRNANHFGIAGYYSELAM-NQDMIGITITNTEPAMAPFGGK 150 (344)
T ss_dssp ECSSEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEESCCCCSCTHHHHHHHH-TTTSEEEEEECCSSCBCCTTBC
T ss_pred ccCcEEEEECCCCccHHHHHHHHHHHHHHHHhcCeEEEEeccCccccchHHHHHHHH-hcCcEEEEecCCCceeeccCCc
Confidence 34444556666667789999999999999999999877655333 454444555554 468765666666664 88886
Q ss_pred CC
Q psy8857 126 RP 127 (133)
Q Consensus 126 R~ 127 (133)
+|
T Consensus 151 ~~ 152 (344)
T 2x06_A 151 EK 152 (344)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 51
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=29.16 E-value=28 Score=28.94 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCC--cEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGI--KNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi--~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
.|-|....+++.+++ ++|. +...|.+.|||.=-..+.+.|.+.|.+|+.|.|..+
T Consensus 190 aTg~Gv~~~~~~~~~---~~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~ 246 (421)
T 2yfq_A 190 ATGFGVAVVVRESAK---RFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDR 246 (421)
T ss_dssp HHHHHHHHHHHHHHH---HTTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCS
T ss_pred chHHHHHHHHHHHHH---hcCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCC
Confidence 344444444444444 3554 467789999986445566888888999999999983
No 52
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3
Probab=29.10 E-value=82 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=26.3
Q ss_pred HHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 74 AGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 74 ~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
+.+.+++.|++.|+++ +.- ..+|++|...|+++.
T Consensus 18 vv~llk~~~i~~vRlY----~~d-~~vl~A~~~tgi~v~ 51 (312)
T 2cyg_A 18 VVSLYKSNNIARMRLY----DPN-QAALQALRNSNIQVL 51 (312)
T ss_dssp HHHHHHHTTCCEEEES----SCC-HHHHHHHTTSCCEEE
T ss_pred HHHHHHhcCCCEEEEc----CCC-HHHHHHHHhcCCEEE
Confidence 4566788899999886 332 688999998998854
No 53
>3cwf_A Alkaline phosphatase synthesis sensor protein PHO; PAS domain, alkaline phosphatase synthesi protein PHOR, structural genomics, PSI-2; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=28.81 E-value=33 Score=22.23 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=16.5
Q ss_pred cCCeEEEEEcCCCCeEEee
Q psy8857 31 FNNTIITITDRKGCTLSWA 49 (133)
Q Consensus 31 ~NNTiitlTd~~G~~l~~~ 49 (133)
..|.-||++|.+|.+++.+
T Consensus 46 ~~~~rItiiD~~G~Vl~dS 64 (122)
T 3cwf_A 46 ALDVSASVIDTDGKVLYGS 64 (122)
T ss_dssp HHTCEEEEEETTSCEEEET
T ss_pred hcCcEEEEECCCCcEEEeC
Confidence 4568899999999999976
No 54
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=28.68 E-value=46 Score=27.01 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=25.2
Q ss_pred EEEEEEeCCCC-ChHHHHHHH-hhcCceEEEEEecCC
Q psy8857 85 NLEVRIKGPGP-GRESSVRAL-NNLGIKITQIEDVTP 119 (133)
Q Consensus 85 ~v~v~~kG~G~-Gr~~~lk~L-~~~gl~I~~I~D~Tp 119 (133)
.+.|-++|||. || .++|++ ....++|+-|-|.+.
T Consensus 4 ~~kv~INGfGrIGr-~v~R~~~~~~~~~ivaind~~d 39 (338)
T 3lvf_P 4 AVKVAINGFGRIGR-LAFRRIQEVEGLEVVAVNDLTD 39 (338)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTSTTEEEEEEECSSC
T ss_pred cEEEEEECCCcHHH-HHHHHHHHCCCceEEEEecCCC
Confidence 47888999985 55 556766 445789999999665
No 55
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A
Probab=28.54 E-value=81 Score=24.89 Aligned_cols=36 Identities=19% Similarity=0.463 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
+++.+.++..|++.|+++ +.- ..+|++|...|+++.
T Consensus 16 ~~vv~llk~~~i~~VRlY----~~d-~~vL~A~~~tgi~v~ 51 (306)
T 1aq0_A 16 STVVSMFKSNGIKSMRLY----APN-QAALQAVGGTGINVV 51 (306)
T ss_dssp HHHHHHHHHHTCCEEEES----SCC-HHHHHHHTTSCCEEE
T ss_pred HHHHHHHHhcCCCEEEEc----CCC-HHHHHHHHhcCCEEE
Confidence 345566778899998886 232 688999999998754
No 56
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=27.97 E-value=1.5e+02 Score=20.27 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQ 113 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~ 113 (133)
++.-++.. +.+.+.+.+.++|+..|.+.+.--+ ..+++.+.+.|+....
T Consensus 132 ~g~Gig~~-ll~~l~~~a~~~g~~~i~l~v~~~N---~~a~~~y~k~GF~~~g 180 (209)
T 3pzj_A 132 RRTRLATE-AVFLLLKTAFELGYRRCEWRCDSRN---AASAAAARRFGFQFEG 180 (209)
T ss_dssp TTSHHHHH-HHHHHHHHHHHTTCSEEEEEEETTC---HHHHHHHHHHTCEEEE
T ss_pred hcCCHHHH-HHHHHHHHHHHcCCcEEEEeecCCC---HHHHHHHHHCCCEEee
Confidence 45555554 4466788888899999999987544 4777888888887544
No 57
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=27.86 E-value=1.3e+02 Score=22.80 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHHHHc-CCcEEEEEEeCC-CCChHHHHHHHhhcCceEEEEEe
Q psy8857 72 ESAGKIAIEH-GIKNLEVRIKGP-GPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 72 ~~~~~~~~~~-gi~~v~v~~kG~-G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
+..++.+.++ |+..|++.+.-. ....+.+-+.+...|+.+..+.-
T Consensus 36 ~e~l~~aa~~~G~~~VEl~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~ 82 (333)
T 3ktc_A 36 IDQINAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAGLKAIGITP 82 (333)
T ss_dssp HHHHHHHHHHSSEEEEEEEESCSTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEecCCCcchhHHHHHHHHHHHcCCeEEEEec
Confidence 5678888899 999999986432 22345555667888999988753
No 58
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1
Probab=27.76 E-value=1.3e+02 Score=19.83 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
++.=++.. +.+.+.+.+.++|+..|.+.+.-.+ ..+++.+.+.|+.....
T Consensus 94 rg~GiG~~-ll~~~~~~a~~~g~~~i~l~v~~~N---~~A~~~yek~GF~~~g~ 143 (175)
T 1vhs_A 94 RGKGVGSY-LLQEALRIAPNLGIRSLMAFIFGHN---KPSLKLFEKHGFAEWGL 143 (175)
T ss_dssp CSSSHHHH-HHHHHHHHGGGGTCSEEEEEEETTC---HHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHhCCceEEEEEEecCC---HHHHHHHHHCCCEEEeE
Confidence 33334443 4466778888899999999887544 46778788889875543
No 59
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=27.62 E-value=41 Score=24.51 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.8
Q ss_pred eEEEEEcCCCCeEEeeec
Q psy8857 34 TIITITDRKGCTLSWASS 51 (133)
Q Consensus 34 TiitlTd~~G~~l~~~S~ 51 (133)
|++++.|.+||.+..+++
T Consensus 2 th~svvD~~GnaVS~T~S 19 (177)
T 3g9k_S 2 THFVIIDRDGTVVSSTNT 19 (177)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcc
Confidence 789999999997776654
No 60
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=27.48 E-value=58 Score=22.42 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=24.7
Q ss_pred eeeeeEEEEEcccCCeEEEEEcCCCCeEEe
Q psy8857 19 HITEGVAHIHASFNNTIITITDRKGCTLSW 48 (133)
Q Consensus 19 ~~~~~il~I~~t~NNTiitlTd~~G~~l~~ 48 (133)
.-..+.+.+...-|.|-|+++|.+|+++..
T Consensus 74 ~~~~Y~i~v~~~g~~t~V~v~d~~G~p~~~ 103 (127)
T 2yh5_A 74 ASGDYKLQVGDLDNRSSLQFIDPKGHTLTQ 103 (127)
T ss_dssp CSEEEEEEEEEETTEEEEEEECTTSCBCCH
T ss_pred CCCCEEEEEEeCCCceEEEEECCCCCCCCH
Confidence 344688889888899999999999987653
No 61
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3
Probab=27.47 E-value=77 Score=25.03 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 73 SAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 73 ~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
++.+.+++.|++.|+++ +.- ..+|++|...|+++.
T Consensus 17 ~vv~llk~~~i~~vRlY----~~d-~~vL~A~~~tgi~v~ 51 (306)
T 1ghs_A 17 DVVQLYRSKGINGMRIY----FAD-GQALSALRNSGIGLI 51 (306)
T ss_dssp HHHHHHHHHTCCEEEES----SCC-HHHHHHTTTSCCEEE
T ss_pred HHHHHHHhcCCCEEEEc----CCC-HHHHHHHHhcCCEEE
Confidence 34556678899999886 332 688999998998764
No 62
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=27.42 E-value=1.5e+02 Score=22.08 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCCCCCCCC
Q psy8857 65 FAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGC 125 (133)
Q Consensus 65 ~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~TpiphnGc 125 (133)
+.....++.+.+.+..++...+.|. |...|-..+..++....-.|.++.-+.+ ||.|+
T Consensus 55 ~~~~~~~~~i~~~~~~~~~~~v~lv--GhS~GG~~a~~~a~~~p~~v~~lv~i~~-p~~g~ 112 (285)
T 1ex9_A 55 VRGEQLLQQVEEIVALSGQPKVNLI--GHSHGGPTIRYVAAVRPDLIASATSVGA-PHKGS 112 (285)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEE--EETTHHHHHHHHHHHCGGGEEEEEEESC-CTTCC
T ss_pred hhHHHHHHHHHHHHHHhCCCCEEEE--EECHhHHHHHHHHHhChhheeEEEEECC-CCCCc
Confidence 4455556666666667787766555 6666666666666544446888777777 77775
No 63
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=26.42 E-value=70 Score=23.32 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCC----ChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGP----GRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~----Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++....+.. ..+.+.+.|...|+.+..+.
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 67 (290)
T 2qul_A 20 PATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCCI 67 (290)
T ss_dssp HHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEec
Confidence 566788889999999998654322 12334455678899998865
No 64
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=25.88 E-value=1.2e+02 Score=21.97 Aligned_cols=45 Identities=7% Similarity=-0.109 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCC--CCCh---HHHHHHHhhcCceEEEEE
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGP--GPGR---ESSVRALNNLGIKITQIE 115 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~--G~Gr---~~~lk~L~~~gl~I~~I~ 115 (133)
.+.+++.+.++|+..|++....+ +... +.+.+.|...|+.+.++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 81 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVG 81 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 36678899999999999886532 2211 344556688899988775
No 65
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=25.34 E-value=80 Score=23.14 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
+.+++.+.++|+..|++. ++-+..+.+-+.|...|+.|..+
T Consensus 34 ~~~l~~~~~~G~~~vEl~--~~~~~~~~~~~~l~~~gl~~~~~ 74 (301)
T 3cny_A 34 QQLLSDIVVAGFQGTEVG--GFFPGPEKLNYELKLRNLEIAGQ 74 (301)
T ss_dssp HHHHHHHHHHTCCEECCC--TTCCCHHHHHHHHHHTTCEECEE
T ss_pred HHHHHHHHHhCCCEEEec--CCCCCHHHHHHHHHHCCCeEEEE
Confidence 445566667777777765 32222333444556677776665
No 66
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=25.00 E-value=1.6e+02 Score=19.68 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQ 113 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~ 113 (133)
++.=++.. +.+.+.+.+.++|+..|.+.+.-.+ ..+++.+.+.|+....
T Consensus 103 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~~~N---~~a~~~yek~GF~~~g 151 (182)
T 2jlm_A 103 RGLGLSKH-LMNELIKRAVESEVHVMVGCIDATN---VASIQLHQKLGFIHSG 151 (182)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEETTC---HHHHHHHHHTTCEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHCCceEEEEEEeCCC---HHHHHHHHHCCCcEEE
Confidence 33334443 4567788888999999999887544 4677777888886543
No 67
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=24.94 E-value=1.4e+02 Score=19.22 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEe
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
++.=++.. +.+.+.+.+.++|+..|.+.+.-.+ ..+++...+.|+......+
T Consensus 98 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~~~N---~~a~~~y~k~GF~~~~~~~ 149 (170)
T 2ge3_A 98 RNKGLGAR-LMRRTLDAAHEFGLHRIELSVHADN---ARAIALYEKIGFAHEGRAR 149 (170)
T ss_dssp TTSSHHHH-HHHHHHHHHHHHTCCEEEEEEETTC---HHHHHHHHHHTCEEEEEEE
T ss_pred hCCCHHHH-HHHHHHHHHHHCCceEEEEEEEcCC---HHHHHHHHHCCCEEEeEec
Confidence 33334444 4466788888899999999987544 4677777888987654433
No 68
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=24.79 E-value=70 Score=23.64 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCC-------CC---hHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPG-------PG---RESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G-------~G---r~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+.++|+..|++.+.... .. .+.+-+.|...|+.|.++.
T Consensus 33 ~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 86 (295)
T 3cqj_A 33 LERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMC 86 (295)
T ss_dssp HHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 56778889999999999875431 11 1234445678899999885
No 69
>1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Probab=24.69 E-value=99 Score=20.14 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
++.=++.. +.+.+.+.+.++|+..|.+.+.-. -..+++...+.|+...
T Consensus 101 rg~G~g~~-ll~~~~~~a~~~g~~~i~l~v~~~---N~~a~~~Y~k~GF~~~ 148 (158)
T 1on0_A 101 RGKGYAKQ-ALAALDQAARSMGIRKLSLHVFAH---NQTARKLYEQTGFQET 148 (158)
T ss_dssp CSSSHHHH-HHHHHHHHHHHHTCCEEEECCCTT---CHHHHHHHHHTTCCCC
T ss_pred cCCCHHHH-HHHHHHHHHHHCCCCEEEEEEecC---CHHHHHHHHHCCCEEE
Confidence 33344444 446678888899999998876543 3467777777887643
No 70
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=24.23 E-value=27 Score=29.55 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecC
Q psy8857 62 STPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVT 118 (133)
Q Consensus 62 ~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~T 118 (133)
.|-|....+++.+++.. ...++...|.+.|+|.=-..+.+.|.+.|-+|+.|.|.+
T Consensus 217 aTg~Gv~~~~~~~~~~~-g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~ 272 (456)
T 3r3j_A 217 ATGYGVVYFAENVLKDL-NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSN 272 (456)
T ss_dssp HHHHHHHHHHHHHHHTT-TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSS
T ss_pred ccchHHHHHHHHHHHHc-CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44555555555554433 234556778899998644556677777899999999965
No 71
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=23.61 E-value=2.9e+02 Score=22.25 Aligned_cols=87 Identities=15% Similarity=0.042 Sum_probs=59.4
Q ss_pred cCCCCe-EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 40 DRKGCT-LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 40 d~~G~~-l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
|++.++ +...+..+.-+-|..--.+.++..+.+..++++++.|+-.|.|.=.. +|..-..+.++. +.|+--...+..
T Consensus 69 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa-~~Gligi~~tNs 147 (365)
T 3i0p_A 69 NPTAKPSIIRETSTTCVLDGNNGFGHVNGTIGMKMAIEKAKKYGMGMVVVRNSTHFGIAGYYSLLAA-QEGCIGICGTNA 147 (365)
T ss_dssp CTTCCCEEEEECSSEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCHHHHHHHHH-HTTEEEEEEECC
T ss_pred CCCCCcEEEeecCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCcchhHHHHHHHH-HCCCEEEEEeCC
Confidence 344443 33344555567777777899999999999999999999877665443 565444454444 468766666776
Q ss_pred CCC--CCCCCCC
Q psy8857 118 TPI--PHNGCRP 127 (133)
Q Consensus 118 Tpi--phnGcR~ 127 (133)
.|. |++|-+|
T Consensus 148 ~p~vaP~GG~~~ 159 (365)
T 3i0p_A 148 RSSVAATFGDEP 159 (365)
T ss_dssp SSCBCCTTCCSC
T ss_pred CCeeCCCCCCCC
Confidence 664 8888654
No 72
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=23.34 E-value=2.9e+02 Score=22.09 Aligned_cols=78 Identities=22% Similarity=0.159 Sum_probs=54.3
Q ss_pred eecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEecCC--CCCCCC
Q psy8857 49 ASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDVTP--IPHNGC 125 (133)
Q Consensus 49 ~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tp--iphnGc 125 (133)
.+..+.-+-|..--.+.++..+.+..++++++.|+-.|.|.=.. +|..-..+.++.. .|+--...+...| .|++|-
T Consensus 72 ~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa~-~Gligi~~tNs~p~vaP~Gg~ 150 (344)
T 1rfm_A 72 ESPATAVIDGDLGLGQVVGKKAMELAIKKAKNVGVGVVATRNANHFGIAGYYSELAMN-QDMIGITITNTEPAMAPFGGK 150 (344)
T ss_dssp ECSSEEEEEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHT-TTSEEEEEECCSSCBCCTTBC
T ss_pred cCCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCcchhHHHHHHHHH-CCCeEEEEeCCCCeeCCCCCC
Confidence 33444445566666789999999999999999999877766543 6665555555554 6876666666655 488886
Q ss_pred CC
Q psy8857 126 RP 127 (133)
Q Consensus 126 R~ 127 (133)
+|
T Consensus 151 ~~ 152 (344)
T 1rfm_A 151 EK 152 (344)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 73
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=22.52 E-value=99 Score=22.47 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCC--CChHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPG--PGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G--~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
+.+++.+.++|+..|++...-+. ...+.+-+.|...|+.|..+.
T Consensus 26 ~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 71 (264)
T 1yx1_A 26 ASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSS 71 (264)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEHHhcCCCHHHHHHHHHHHHcCCEEEEec
Confidence 55788899999999999743221 134556667788999987653
No 74
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=22.33 E-value=82 Score=25.70 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=35.6
Q ss_pred cEEEEEEeCCCCChHHHHHHHhhc--CceEEEEEecCCCCCCCCCCCC
Q psy8857 84 KNLEVRIKGPGPGRESSVRALNNL--GIKITQIEDVTPIPHNGCRPSK 129 (133)
Q Consensus 84 ~~v~v~~kG~G~Gr~~~lk~L~~~--gl~I~~I~D~TpiphnGcR~kK 129 (133)
...+|.+=|-|++--++...|.+. |.+|+-|.+...+|++.|.+.|
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk 57 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSK 57 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGT
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCH
Confidence 356788889998777777777554 8899999988888988886544
No 75
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=22.32 E-value=3.1e+02 Score=22.06 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=59.9
Q ss_pred cCCCCe-EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 40 DRKGCT-LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 40 d~~G~~-l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
|++.++ +...+..+.-+-+..--.+.++..+.+..++++++.|+-.|.|.=.. +|..-..+.++.. .|+--...+..
T Consensus 73 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~-~Gligi~~tNs 151 (360)
T 1v9n_A 73 NLHPKIRVIREGPSYALIDGDEGLGQVVGYRSMKLAIKKAKDTGIGIVIARNSNHYGIAGYYALMAAE-EGMIGISMTNS 151 (360)
T ss_dssp BSSCCCEEEEEETTEEEEECTTBCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHT-TTSEEEEEECC
T ss_pred CCCCCeEEEEeCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHH-CCCeEEEEeCC
Confidence 344443 33445555567777778899999999999999999999877766543 6665555655554 58765566665
Q ss_pred CC--CCCCCCCC
Q psy8857 118 TP--IPHNGCRP 127 (133)
Q Consensus 118 Tp--iphnGcR~ 127 (133)
.| .|++|-+|
T Consensus 152 ~p~vaP~Gg~~~ 163 (360)
T 1v9n_A 152 RPLVAPTGGIER 163 (360)
T ss_dssp SSCBCCTTCCSC
T ss_pred CCeeCCCCCCCC
Confidence 55 48888654
No 76
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=22.30 E-value=1.7e+02 Score=19.03 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
++.=++. .+.+.+.+.+.++|+..|.+.+.-- -..+++...+.|+.....
T Consensus 95 rg~Gig~-~ll~~~~~~a~~~g~~~i~l~v~~~---N~~a~~~y~k~GF~~~g~ 144 (172)
T 2j8m_A 95 RGKGLGV-QLLQALIERARAQGLHVMVAAIESG---NAASIGLHRRLGFEISGQ 144 (172)
T ss_dssp TTSSHHH-HHHHHHHHHHHHTTCCEEEEEEETT---CHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHH-HHHHHHHHHHHHCCccEEEEEEcCC---CHHHHHHHHHCCCEEEee
Confidence 3434444 4556788888899999999887643 346777778889875543
No 77
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=22.25 E-value=1.3e+02 Score=22.02 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCC-C---hHHHHHHHhhcCceEEEEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGP-G---RESSVRALNNLGIKITQIE 115 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~-G---r~~~lk~L~~~gl~I~~I~ 115 (133)
+..++.+.++|+..|++.+..... . .+.+.+.|...|+.+..+.
T Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 71 (290)
T 3tva_A 24 GVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIF 71 (290)
T ss_dssp SBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 346778889999999999854321 1 2334556688999999884
No 78
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=22.03 E-value=1.9e+02 Score=21.42 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=29.6
Q ss_pred cCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q psy8857 40 DRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIK 84 (133)
Q Consensus 40 d~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~ 84 (133)
++.-..+. .|+|-+--.|++ +...+..|+.++++.++++|++
T Consensus 56 ~Pk~t~lI-F~SGKiv~TGak--S~e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 56 SPKITSLI-FKSGKMVVTGAK--STDELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp TTTEEEEE-CTTSEEEEECCS--SHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEE-eCCCeEEEeccC--CHHHHHHHHHHHHHHHHHcCCc
Confidence 44333333 466777777765 4567888999999999999985
No 79
>4h8a_A Ureidoglycolate dehydrogenase; rossmann fold, oxidoreductase; HET: NAI; 1.64A {Escherichia coli} PDB: 4fju_A* 4fjs_A* 1xrh_A
Probab=21.79 E-value=3.1e+02 Score=21.86 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=59.7
Q ss_pred cCCCCe-EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 40 DRKGCT-LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 40 d~~G~~-l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
|++.++ +...+..+.-+-|..--.+.++..+.+.+++++++.|+-.|.|.=.. +|..-..+.++.. .|+-=...+..
T Consensus 64 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gig~v~vrns~H~G~~g~y~~~aa~-~Gligi~~tNs 142 (339)
T 4h8a_A 64 NREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAAR-AGFIGISMCQS 142 (339)
T ss_dssp CSSCCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHHHHH-TTSEEEEEECC
T ss_pred CCCCCeEEEEccCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCcchhHHHHHHHHH-CCCEEEEEeCC
Confidence 334443 33445555667777778899999999999999999999877766543 6665555655554 68765566665
Q ss_pred CC--CCCCCCCC
Q psy8857 118 TP--IPHNGCRP 127 (133)
Q Consensus 118 Tp--iphnGcR~ 127 (133)
.| .|++|-+|
T Consensus 143 ~p~vaP~Gg~~~ 154 (339)
T 4h8a_A 143 DPMVVPFGGAEI 154 (339)
T ss_dssp CSCBCCTTBSSC
T ss_pred CCeeCCCCCCCC
Confidence 55 48888554
No 80
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=21.61 E-value=3.1e+02 Score=21.86 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=59.6
Q ss_pred cCCCCe-EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 40 DRKGCT-LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 40 d~~G~~-l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
|++.++ +...+..+.-+-+..--.+.++..+.+..++++++.|+-.|.|.=.. +|..-..+.++.. .|+-=...+..
T Consensus 72 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~-~Gligi~~tNs 150 (343)
T 1wtj_A 72 DGKAVPVVEDVGAAFVRVDACNGFAQPALAAARSLLIDKARSAGVAILAIRGSHHFAALWPDVEPFAE-QGLVALSMVNS 150 (343)
T ss_dssp CTTCCCEEEEEETTEEEEECTTSBHHHHHHHHHHHHHHHHHHHSEEEEEEEEEECCSCSHHHHHHHHH-TTCEEEEECCC
T ss_pred CCCCCeEEEEcCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCCCchHHHHHHHHH-CCCeEEEEeCC
Confidence 344443 34445555667777788899999999999999999999877765433 6665555555554 58755555555
Q ss_pred CC--CCCCCCCC
Q psy8857 118 TP--IPHNGCRP 127 (133)
Q Consensus 118 Tp--iphnGcR~ 127 (133)
.| .|++|-+|
T Consensus 151 ~~~vaP~Gg~~~ 162 (343)
T 1wtj_A 151 MTCVVPHGARQP 162 (343)
T ss_dssp CSCBCCTTCSSC
T ss_pred CCeeCCCCCCCC
Confidence 45 48888654
No 81
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=21.43 E-value=3.2e+02 Score=21.98 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=55.2
Q ss_pred eeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEecCC--CCCCC
Q psy8857 48 WASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDVTP--IPHNG 124 (133)
Q Consensus 48 ~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tp--iphnG 124 (133)
..+..+.-+-|..--.+.++..+.+.+++++++.|+-.|-|.=.. +|..-..+.++.. .|+--...+...| .|++|
T Consensus 94 ~~~~a~~~vDg~~g~G~~~~~~Am~~aiekAk~~Gig~v~vrnS~H~G~~g~y~~~aa~-~Gligi~~tns~p~vaP~GG 172 (357)
T 3uoe_A 94 WRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAAR-DGLIGIVMSTSEALVHPFGG 172 (357)
T ss_dssp EEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHHHHH-TTCEEEEEECCSSCBCCTTB
T ss_pred EecCcEEEEECCCCchHHHHHHHHHHHHHHHHHhCEEEEEEecCCCccchHHHHHHHHH-CCCEEEEEcCCCCeeCCCCC
Confidence 344444556666667789999999999999999999877766543 6665555655554 6876555666555 48888
Q ss_pred CCC
Q psy8857 125 CRP 127 (133)
Q Consensus 125 cR~ 127 (133)
-+|
T Consensus 173 ~~~ 175 (357)
T 3uoe_A 173 TQA 175 (357)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 82
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=21.29 E-value=76 Score=25.67 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=23.9
Q ss_pred EEEEEEeCCCC-ChHHHHHHH-hhcCceEEEEEec
Q psy8857 85 NLEVRIKGPGP-GRESSVRAL-NNLGIKITQIEDV 117 (133)
Q Consensus 85 ~v~v~~kG~G~-Gr~~~lk~L-~~~gl~I~~I~D~ 117 (133)
.+.|-++|||. || .++|++ ....++|+-|-|.
T Consensus 3 ~~kv~INGfGrIGr-~v~R~~~~~~~~~ivaiNd~ 36 (337)
T 3v1y_O 3 KIKIGINGFGRIGR-LVARVALQSEDVELVAVNDP 36 (337)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTCSSEEEEEEECT
T ss_pred ceEEEEECCChHHH-HHHHHHHhCCCcEEEEEeCC
Confidence 36788999995 55 556766 4457899999996
No 83
>3pp9_A Putative streptothricin acetyltransferase; toxin production resistance, infectious diseases, structural genomics; HET: MSE ACO; 1.60A {Bacillus anthracis}
Probab=21.16 E-value=1.8e+02 Score=18.99 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIE 115 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~ 115 (133)
++.-++.. +.+.+.+.+.+.|+..+.+.+...+ ..+++.+.+.|+......
T Consensus 113 rg~Gig~~-ll~~~~~~~~~~g~~~i~~~~~~~N---~~a~~~y~k~Gf~~~~~~ 163 (187)
T 3pp9_A 113 RTLGVGKR-LIAQAKQWAKEGNMPGIMLETQNNN---VAACKFYEKCGFVIGGFD 163 (187)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEETTC---HHHHHHHHHTTCEEEEEE
T ss_pred hcCCHHHH-HHHHHHHHHHHCCCCEEEEEEecCC---HHHHHHHHHCCCEEeceE
Confidence 44444444 4466788889999999999887544 467777788899877644
No 84
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=21.10 E-value=3.2e+02 Score=21.89 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=55.8
Q ss_pred eeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEecCC--CCCCC
Q psy8857 48 WASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDVTP--IPHNG 124 (133)
Q Consensus 48 ~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tp--iphnG 124 (133)
..+..+.-+-+..--.+.++..+.+.+++++++.|+-.|.|.=.. +|..-..+.++.. .|+--...+...| .|++|
T Consensus 80 ~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~-~Gligi~~tNs~~~vaP~Gg 158 (358)
T 1z2i_A 80 SGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAAR-QGYIGLAFCNSDSFVRLHDG 158 (358)
T ss_dssp ECCTTEEEEECSSCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHHH-TTSEEEEEECCSCCBCCTTB
T ss_pred EcCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHH-CCCeEEEEeCCCCeeCCCCC
Confidence 334444556777777899999999999999999999877766543 6665555555554 5876556666555 48888
Q ss_pred CCC
Q psy8857 125 CRP 127 (133)
Q Consensus 125 cR~ 127 (133)
-+|
T Consensus 159 ~~~ 161 (358)
T 1z2i_A 159 AMR 161 (358)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 85
>1nxu_A Hypothetical oxidoreductase YIAK; hypothetical protein, structural genomics, PSI, protein structure initiative; 1.80A {Escherichia coli} SCOP: c.122.1.1 PDB: 1s20_A*
Probab=21.01 E-value=3.1e+02 Score=21.70 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=59.5
Q ss_pred cCCCCe-EEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEec
Q psy8857 40 DRKGCT-LSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDV 117 (133)
Q Consensus 40 d~~G~~-l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~ 117 (133)
|++.++ +...+..+.-+-+..--.+.++..+.+..++++++.|+-.|.|.=.. +|..-..+.++. +.|+--...+..
T Consensus 62 ~~~a~p~v~~~~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa-~~Gligi~~tns 140 (333)
T 1nxu_A 62 IPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAA-EKGYIGICWTNS 140 (333)
T ss_dssp CTTCCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCSCTHHHHHHHH-HTTCEEEEEECC
T ss_pred CCCCCcEEEEcCCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCCCccHHHHHHHH-HCCCEEEEEeCC
Confidence 344443 33445555667777788899999999999999999999877766543 565444554444 468765556665
Q ss_pred CC--CCCCCCCC
Q psy8857 118 TP--IPHNGCRP 127 (133)
Q Consensus 118 Tp--iphnGcR~ 127 (133)
.| .|++|-+|
T Consensus 141 ~~~vaP~Gg~~~ 152 (333)
T 1nxu_A 141 IAVMPPWGAKEC 152 (333)
T ss_dssp SSCBCCTTBSSC
T ss_pred CCeeCCCCCCCC
Confidence 55 48888654
No 86
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*
Probab=20.93 E-value=88 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEE
Q psy8857 72 ESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKIT 112 (133)
Q Consensus 72 ~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~ 112 (133)
..+.+.++..||+.|+|+ +.- ..+|++|...|+++.
T Consensus 17 ~~vv~llks~gi~~VRlY----daD-~~vL~Al~~sgi~v~ 52 (316)
T 3em5_A 17 SEVIALYKKSNITRMRIY----DPN-QAVLEALRGSNIELI 52 (316)
T ss_dssp HHHHHHHHHTTCCEEECS----SCC-HHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHcCCCEEEEe----cCC-HHHHHHhhcCCceEE
Confidence 456777788999998886 332 368999998998843
No 87
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=20.56 E-value=40 Score=20.19 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=12.7
Q ss_pred CCCChHHHHHHHhhcC
Q psy8857 93 PGPGRESSVRALNNLG 108 (133)
Q Consensus 93 ~G~Gr~~~lk~L~~~g 108 (133)
.|.-|+.++++|...+
T Consensus 21 mGFsr~~ai~AL~~a~ 36 (52)
T 2ooa_A 21 EGYAFEEVKRALEIAQ 36 (52)
T ss_dssp TTCCHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHhC
Confidence 5667999999996554
No 88
>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} SCOP: c.122.1.1
Probab=20.52 E-value=3.3e+02 Score=21.77 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=52.7
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeC-CCCChHHHHHHHhhcCceEEEEEecCC--CCCCCCC
Q psy8857 50 SSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKG-PGPGRESSVRALNNLGIKITQIEDVTP--IPHNGCR 126 (133)
Q Consensus 50 S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG-~G~Gr~~~lk~L~~~gl~I~~I~D~Tp--iphnGcR 126 (133)
+..+.-+-+..--.+.++..+.+.+++++++.|+-.|.|.=.. +|..-..+.++.. .|+-=...+...| .|++|-+
T Consensus 75 ~~a~~~vDg~~g~G~~~~~~am~~aiekAk~~Gi~~v~vrns~H~G~~g~y~~~aa~-~Gligi~~tNs~~~vaP~Gg~~ 153 (351)
T 1xrh_A 75 GPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAAR-AGFIGISMCQSDPMVVPFGGAE 153 (351)
T ss_dssp SSSEEEEEEEEECHHHHHHHHHHHHHHHHHHHSEEEEEEEEECCCCCTHHHHHHHHH-TTSEEEEEECCCCCBCCTTBSS
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHHHHHHHHcCEEEEEEeCCCCcchHHHHHHHHHH-CCCeEEEEeCCCCeeCCCCCCC
Confidence 3333445555556788999999999999999999877766543 6665555655554 5876555566555 4888865
Q ss_pred C
Q psy8857 127 P 127 (133)
Q Consensus 127 ~ 127 (133)
|
T Consensus 154 ~ 154 (351)
T 1xrh_A 154 I 154 (351)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=20.43 E-value=1.9e+02 Score=20.73 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCcEEEEEEeCC------------CCC---hHHHHHHHhhcCceEEEEEe
Q psy8857 71 AESAGKIAIEHGIKNLEVRIKGP------------GPG---RESSVRALNNLGIKITQIED 116 (133)
Q Consensus 71 a~~~~~~~~~~gi~~v~v~~kG~------------G~G---r~~~lk~L~~~gl~I~~I~D 116 (133)
.+.+++.+.++|+..|++....+ ... .+.+-+.|...|+.|.++.-
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~ 84 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGV 84 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 35678889999999999976421 111 23344556889999888753
No 90
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=20.24 E-value=1.7e+02 Score=22.04 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEecCC
Q psy8857 68 QVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119 (133)
Q Consensus 68 ~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D~Tp 119 (133)
..+.+.+.+.++|+||+.|.|- .-.|.....++..| .|++|+-|+-..-
T Consensus 29 ~~tl~la~era~e~~Ik~iVVA-S~sG~TA~k~~e~~--~~i~lVvVTh~~G 77 (201)
T 1vp8_A 29 EETLRLAVERAKELGIKHLVVA-SSYGDTAMKALEMA--EGLEVVVVTYHTG 77 (201)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEE-CSSSHHHHHHHHHC--TTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEE-eCCChHHHHHHHHh--cCCeEEEEeCcCC
Confidence 3455566788999999977553 22343333334433 6888888875443
No 91
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=20.24 E-value=1.8e+02 Score=18.49 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEE
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQI 114 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I 114 (133)
++.-++.. +.+.+.+.+.+.|+..|.+.+.--+ ..+++...+.|+.....
T Consensus 94 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~~~N---~~a~~~y~k~GF~~~g~ 143 (169)
T 3g8w_A 94 NDEIVNRE-LINHIIQYAKEQNIETLMIAIASNN---ISAKVFFSSIGFENLAF 143 (169)
T ss_dssp GCHHHHHH-HHHHHHHHHHHTTCCEEEEEEETTC---HHHHHHHHTTTCEEEEE
T ss_pred CCCcHHHH-HHHHHHHHHHHCCCCEEEEEEecCC---HHHHHHHHHcCCEEeee
Confidence 44444444 5567888899999999998887544 36777788889876554
No 92
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=20.16 E-value=1.7e+02 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred eecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q psy8857 49 ASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIK 84 (133)
Q Consensus 49 ~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~ 84 (133)
+|+|-+--.|++ +...+..|+.++++.++++|++
T Consensus 60 F~SGKiv~TGak--S~~~~~~a~~~i~~~L~~lG~~ 93 (182)
T 1ais_A 60 FSSGKLVVTGAK--SVQDIERAVAKLAQKLKSIGVK 93 (182)
T ss_dssp CTTSEEEEEEES--SHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCeEEEecCC--CHHHHHHHHHHHHHHHHHcCCC
Confidence 466666556654 4567888999999999999975
No 93
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=20.12 E-value=1.3e+02 Score=22.02 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=28.9
Q ss_pred EEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q psy8857 38 ITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIK 84 (133)
Q Consensus 38 lTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~ 84 (133)
+.++.-..+. +|+|-+--.|++ +...+..|+..+++.++++|++
T Consensus 54 l~~Pk~t~lI-F~SGKiv~TGAk--S~e~a~~a~~~~~~~L~~lg~~ 97 (188)
T 2z8u_A 54 LSVPKVALLI-FRSGKVNCTGAK--SKEEAEIAIKKIIKELKDAGID 97 (188)
T ss_dssp ETTTTEEEEE-CTTSEEEEEEES--SHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcEEEEE-eCCCeEEEecCC--CHHHHHHHHHHHHHHHHhcCCC
Confidence 3344333333 356665556554 4567888999999999999974
No 94
>2cy2_A TTHA1209, probable acetyltransferase; structural genomics, unknown function, NPPSFA; HET: ACO; 2.00A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 1wk4_A*
Probab=20.10 E-value=1.7e+02 Score=18.29 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCChHHHHHHHhhcCceEEEEEe
Q psy8857 61 KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIED 116 (133)
Q Consensus 61 k~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr~~~lk~L~~~gl~I~~I~D 116 (133)
++.-++.. +...+.+.+.+.|+..|.+.+.-.+ ..+++.+.+.|+......+
T Consensus 101 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~~~n---~~a~~~y~k~Gf~~~~~~~ 152 (174)
T 2cy2_A 101 QRKGLGRA-LFHEGARLLQAEGYGRMLVWVLKEN---PKGRGFYEHLGGVLLGERE 152 (174)
T ss_dssp CSSSHHHH-HHHHHHHHHHHTTCCEEEEEEETTC---HHHHHHHHHTTCEEEEEEE
T ss_pred hCcCHHHH-HHHHHHHHHHhCCCceEEEEEECCC---hhHHHHHHHcCCeeeceEE
Confidence 33334443 4466778888899999998876544 4677777888998766443
Done!