RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8857
         (133 letters)



>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
           [TaxId: 562]}
          Length = 117

 Score =  156 bits (395), Expect = 4e-51
 Identities = 81/117 (69%), Positives = 96/117 (82%)

Query: 17  KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGK 76
           +K +++GVAHIHASFNNTI+TITDR+G  L WA++G   F+GSRKSTPFAAQVAAE    
Sbjct: 1   RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCAD 60

Query: 77  IAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133
              E+GIKNLEV +KGPGPGRES++RALN  G +IT I DVTPIPHNGCRP K+RRV
Sbjct: 61  AVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117


>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
           thermophilus [TaxId: 274]}
          Length = 119

 Score =  147 bits (373), Expect = 9e-48
 Identities = 58/116 (50%), Positives = 86/116 (74%)

Query: 17  KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGK 76
           K+ +  G A+IHAS+NNTI+TITD  G  ++W+S G + +KGSRK TP+AAQ+AA  A K
Sbjct: 1   KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAK 60

Query: 77  IAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRR 132
            A+ +G+++++V ++G G GRE ++RAL   G+++  I D TP+PHNGCRP K+ R
Sbjct: 61  KAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 116


>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
          thermophilus [TaxId: 274]}
          Length = 86

 Score = 27.4 bits (61), Expect = 0.21
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 26 HIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKN 85
          HI+A        I D KG TL  ASS ++  KG++      A+    +  + A+  GIK 
Sbjct: 12 HIYAQI------IDDEKGVTLVSASSLALKLKGNKT---EVARQVGRALAEKALALGIKQ 62


>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
           {Escherichia coli [TaxId: 562]}
          Length = 518

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 88  VRIKGPGPGRESSVRALNNLGIKITQIE--DVTPIPHNGCRPSKRR 131
           +R K      ES   AL   GI+  ++   D+ P    G    + R
Sbjct: 303 IRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVR 348


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 24.6 bits (53), Expect = 5.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 82  GIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNG 124
            I++ E      G  RE    AL+ LG K+  + D  P    G
Sbjct: 117 KIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLG 159


>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
          {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 23.7 bits (51), Expect = 6.3
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 11 RIRKKIKK------HITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTP 64
          R R+K+++       +     HI+A      I     +    +     ++  +       
Sbjct: 11 RARRKLQELGATRLVVHRTPRHIYAQV----IAPNGSEVLVAASTVEKAIAEQLKYTGNK 66

Query: 65 FAAQVAAESAGKIAIEHGIKN 85
           AA    ++  + A+E GIK+
Sbjct: 67 DAAAAVGKAVAERALEKGIKD 87


>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 230

 Score = 23.9 bits (51), Expect = 6.6
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 111 ITQIEDVTPIPHNGCRPSKR 130
           I + E  T   + GC P +R
Sbjct: 3   IVKEEVETNWDY-GCNPYER 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,949
Number of extensions: 20092
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 13
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)