BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8858
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4G9R6|RS13_HERAR 30S ribosomal protein S13 OS=Herminiimonas arsenicoxydans GN=rpsM
PE=3 SV=1
Length = 121
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 111/121 (91%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+N+PN+QH +IGLTAIYGIGR RA+KIC+ T + TTKK+KDL+D+ELEKLR+EI
Sbjct: 1 MARIAGVNVPNHQHTVIGLTAIYGIGRPRAQKICDATGVLTTKKVKDLDDSELEKLRDEI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
+KFI+EGDLRRE SMNIKRL+DL CYRG+RHRK LPCRGQRTRTNARTRKGPR+AAQSL+
Sbjct: 61 AKFIVEGDLRREISMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A6T3I1|RS13_JANMA 30S ribosomal protein S13 OS=Janthinobacterium sp. (strain
Marseille) GN=rpsM PE=3 SV=1
Length = 121
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/121 (76%), Positives = 110/121 (90%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+N+PN+QH +IGLTAIYGIGR R++KIC+ + TTKK+KDL+DNELEKLR+EI
Sbjct: 1 MARIAGVNVPNHQHTVIGLTAIYGIGRPRSQKICDTAGVPTTKKVKDLDDNELEKLRDEI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
+KFI+EGDLRRE SMNIKRL+DL CYRG+RHRK LPCRGQRTRTNARTRKGPR+AAQSL+
Sbjct: 61 AKFIVEGDLRRELSMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q13TJ3|RS13_BURXL 30S ribosomal protein S13 OS=Burkholderia xenovorans (strain LB400)
GN=rpsM PE=3 SV=1
Length = 121
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAIYGIGR+R++ IC ++ +KK+KDLND +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIYGIGRTRSRDICVAAGVAFSKKVKDLNDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI+EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQSL+
Sbjct: 61 GKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B2T728|RS13_BURPP 30S ribosomal protein S13 OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=rpsM PE=3 SV=1
Length = 121
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAIYG+GR+R++ IC ++ +KK+KDLND +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIYGVGRTRSRDICVAAGVAFSKKVKDLNDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI+EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQSL+
Sbjct: 61 GKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q2SU50|RS13_BURTA 30S ribosomal protein S13 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsM
PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q63Q34|RS13_BURPS 30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain
K96243) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A3NEF6|RS13_BURP6 30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain 668)
GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q3JMT6|RS13_BURP1 30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain
1710b) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A3P090|RS13_BURP0 30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain
1106a) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A1V880|RS13_BURMS 30S ribosomal protein S13 OS=Burkholderia mallei (strain SAVP1)
GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q62GM8|RS13_BURMA 30S ribosomal protein S13 OS=Burkholderia mallei (strain ATCC
23344) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A2S7J9|RS13_BURM9 30S ribosomal protein S13 OS=Burkholderia mallei (strain NCTC
10229) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A3MRX7|RS13_BURM7 30S ribosomal protein S13 OS=Burkholderia mallei (strain NCTC
10247) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 105/121 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+RA+ IC + ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B2JI42|RS13_BURP8 30S ribosomal protein S13 OS=Burkholderia phymatum (strain DSM
17167 / STM815) GN=rpsM PE=3 SV=1
Length = 121
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 104/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAIYGIGR+R++ IC ++ +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIYGIGRTRSRDICVAAGVAFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI+EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQSL+
Sbjct: 61 GKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A4JAR3|RS13_BURVG 30S ribosomal protein S13 OS=Burkholderia vietnamiensis (strain G4
/ LMG 22486) GN=rpsM PE=3 SV=1
Length = 121
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICSAAGVEFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI+EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFIVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q0BJ23|RS13_BURCM 30S ribosomal protein S13 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=rpsM PE=3 SV=1
Length = 121
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICSAAGVEFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI+EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFIVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B1YRQ2|RS13_BURA4 30S ribosomal protein S13 OS=Burkholderia ambifaria (strain MC40-6)
GN=rpsM PE=3 SV=1
Length = 121
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICSAAGVEFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI+EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFIVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A9ADL6|RS13_BURM1 30S ribosomal protein S13 OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=rpsM PE=3 SV=1
Length = 121
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B4E5E3|RS13_BURCJ 30S ribosomal protein S13 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rpsM PE=3 SV=1
Length = 121
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+GIGR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q39KE4|RS13_BURS3 30S ribosomal protein S13 OS=Burkholderia sp. (strain 383) GN=rpsM
PE=3 SV=1
Length = 121
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+G+GR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A0K3P8|RS13_BURCH 30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain
HI2424) GN=rpsM PE=3 SV=1
Length = 121
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+G+GR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B1JU45|RS13_BURCC 30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain
MC0-3) GN=rpsM PE=3 SV=1
Length = 121
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+G+GR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q1BRX1|RS13_BURCA 30S ribosomal protein S13 OS=Burkholderia cenocepacia (strain AU
1054) GN=rpsM PE=3 SV=1
Length = 121
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH IGLTAI+G+GR+R++ IC + +KK+KDL D +LEKLREE+
Sbjct: 1 MARIAGVNIPNHQHTEIGLTAIFGVGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPRRAAQ+L+
Sbjct: 61 GKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B2UEJ6|RS13_RALPJ 30S ribosomal protein S13 OS=Ralstonia pickettii (strain 12J)
GN=rpsM PE=3 SV=1
Length = 121
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H +IGLTAIYGIGRSRA+KICE T I T KK+KDL D + + LR+EI
Sbjct: 1 MARIAGVNIPNHKHTVIGLTAIYGIGRSRAQKICEATGIPTDKKVKDLTDPDQDALRKEI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPR+A +L+
Sbjct: 61 EKFLVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRKAGVALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q8XV35|RS13_RALSO 30S ribosomal protein S13 OS=Ralstonia solanacearum (strain
GMI1000) GN=rpsM PE=3 SV=1
Length = 121
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/121 (71%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H +IGLTAIYGIGRSRA+KICE T I T KK+KDL D + + LR+EI
Sbjct: 1 MARIAGVNIPNHKHTVIGLTAIYGIGRSRARKICEATGIPTDKKVKDLTDPDQDALRKEI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF++EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPR+A +L+
Sbjct: 61 EKFLVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRKAGVALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q1LI60|RS13_RALME 30S ribosomal protein S13 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpsM PE=3 SV=1
Length = 121
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H IGLTAIYGIGRSRA+KICE T + KK+KDL D +LEKLR+E+
Sbjct: 1 MARIAGVNIPNHKHTEIGLTAIYGIGRSRARKICEATGVPFDKKVKDLTDADLEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
K +EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPR+A +L+
Sbjct: 61 GKVTVEGDLRRETTMNIKRLMDLGCYRGMRHRKGLPMRGQRTRTNARTRKGPRKAGVALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B3R7E6|RS13_CUPTR 30S ribosomal protein S13 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rpsM PE=3 SV=1
Length = 121
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/121 (70%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H IGLTAIYGIGRSRA+KICE T + KK+KDL D +LEKLR+E+
Sbjct: 1 MARIAGVNIPNHKHTEIGLTAIYGIGRSRARKICEATGVPFDKKVKDLTDADLEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
K +EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPR+A +L+
Sbjct: 61 GKVTVEGDLRRETTMNIKRLMDLGCYRGMRHRKGLPMRGQRTRTNARTRKGPRKAGVALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q0K642|RS13_CUPNH 30S ribosomal protein S13 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rpsM PE=3 SV=1
Length = 121
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H IGLTAIYG+GRSRA+KICE T + KK+KDL D +LEKLR+E+
Sbjct: 1 MARIAGVNIPNHKHTEIGLTAIYGVGRSRARKICEATGVPFDKKVKDLTDADLEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
K +EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPR+A +L+
Sbjct: 61 GKVTVEGDLRRETTMNIKRLMDLGCYRGMRHRKGLPMRGQRTRTNARTRKGPRKAGVALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q46WG6|RS13_CUPPJ 30S ribosomal protein S13 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rpsM PE=3 SV=1
Length = 121
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H IGLTAIYG+GRSRA+KICE T + KK+KDL D +LEKLR+E+
Sbjct: 1 MARIAGVNIPNHKHTEIGLTAIYGVGRSRARKICEATGVPFDKKVKDLTDADLEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
K +EGDLRRE +MNIKRL+DL CYRG+RHRK LP RGQRTRTNARTRKGPR+A +L+
Sbjct: 61 GKVTVEGDLRRETTMNIKRLMDLGCYRGMRHRKGLPLRGQRTRTNARTRKGPRKAGVALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A4SUY3|RS13_POLSQ 30S ribosomal protein S13 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rpsM PE=3 SV=1
Length = 121
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH +IGLTAI+GIG +RA KIC+ T ++ KK+KDL D +LEKLR+E+
Sbjct: 1 MARIAGVNIPNHQHTVIGLTAIFGIGTTRANKICQTTGVAIDKKVKDLTDADLEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KFI EGDLRRE +M+IKRL+DL CYRG+RHRK LP RGQRT+TNARTRKGPR++ L+
Sbjct: 61 GKFITEGDLRREVTMSIKRLMDLGCYRGVRHRKGLPVRGQRTKTNARTRKGPRKSGVQLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q21QP6|RS13_RHOFD 30S ribosomal protein S13 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rpsM PE=3 SV=1
Length = 121
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+G+GR+RA+KIC+ I+ +KK+KDL D ELEK+R+++
Sbjct: 1 MARIAGINIPPQQHSEIGLTAIFGVGRNRARKICDACGIAYSKKVKDLTDLELEKIRDQV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
++F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+AAQSL+
Sbjct: 61 AQFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|C5CQ78|RS13_VARPS 30S ribosomal protein S13 OS=Variovorax paradoxus (strain S110)
GN=rpsM PE=3 SV=1
Length = 121
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 103/121 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP ++H IGLTAI+GIGR+RA++ICE + I +KKIKDL D +LEK+R++I
Sbjct: 1 MARIAGINIPPHKHAEIGLTAIFGIGRTRARQICEASGIEYSKKIKDLTDADLEKIRDQI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
+ F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+AAQSL+
Sbjct: 61 ALFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKAAQSLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A1TJT9|RS13_ACIAC 30S ribosomal protein S13 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpsM PE=3 SV=1
Length = 121
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP +QH IGLTAI+GIGR+RA+KICE I+ +KKIKDL D +LEK+R++I
Sbjct: 1 MARIAGINIPPHQHAEIGLTAIFGIGRTRARKICEACGIAYSKKIKDLTDGDLEKIRDQI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
++F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+ A +L+
Sbjct: 61 AQFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKGAAALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q12G80|RS13_POLSJ 30S ribosomal protein S13 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpsM PE=3 SV=1
Length = 121
Score = 178 bits (452), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+GIGR+RA+KICE I+ +KKIKDL D +LEK+R++I
Sbjct: 1 MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEACDIAYSKKIKDLTDGDLEKIRDQI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
+ F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+AA +L+
Sbjct: 61 ALFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKAAAALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q3SLM7|RS13_THIDA 30S ribosomal protein S13 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rpsM PE=3 SV=1
Length = 118
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 96/115 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH +I LTAIYGIGR+ + KICE I+ T KIKDL++ E+E+LRE +
Sbjct: 1 MARIAGVNIPNHQHAVIALTAIYGIGRTTSGKICEAAGIAQTSKIKDLSEAEMERLREGV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRA 115
SKF +EGDLRRE +MNIKRL+DL CYRG RHRK LP RGQRTRTNARTRKGPR+A
Sbjct: 61 SKFTVEGDLRREVTMNIKRLMDLGCYRGFRHRKGLPVRGQRTRTNARTRKGPRKA 115
>sp|A1VJ37|RS13_POLNA 30S ribosomal protein S13 OS=Polaromonas naphthalenivorans (strain
CJ2) GN=rpsM PE=3 SV=1
Length = 121
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP +H IGLTAI+GIGR+RA+KICE +I KKIKDL D++LEK+R+ I
Sbjct: 1 MARIAGINIPPQKHAEIGLTAIFGIGRTRARKICEACEIDYAKKIKDLTDSDLEKIRDHI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
++F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+AA SL+
Sbjct: 61 AQFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKAAASLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B1XSS4|RS13_POLNS 30S ribosomal protein S13 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rpsM PE=3 SV=1
Length = 121
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 79/121 (65%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH +IGLTAI+GIG +RA +IC+ T ++ KK+KDL D +LEKLR+E+
Sbjct: 1 MARIAGVNIPNHQHTVIGLTAIFGIGTTRAHQICKTTGVAIDKKVKDLIDADLEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
KF+ EGDLRRE +M+IKRL+DL CYRG+RHRK LP RGQRT+TNARTRKGPR++ L+
Sbjct: 61 GKFVTEGDLRREVTMSIKRLMDLGCYRGVRHRKDLPVRGQRTKTNARTRKGPRKSGVQLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q2YAX5|RS13_NITMU 30S ribosomal protein S13 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rpsM PE=3 SV=1
Length = 125
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 100/118 (84%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH I LTAIYGIGR+RA++ICE I+ + K+KD+ D E++KLR+ +
Sbjct: 1 MARIAGVNIPNHQHAEIALTAIYGIGRARAREICEAAGINVSTKMKDVTDAEMDKLRDNV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQS 118
+KF++EGDLRRE SMNIKRL+DL CYRG+RHR+ LP RGQRTRTNARTRKGPR+A ++
Sbjct: 61 AKFVVEGDLRREVSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAVRA 118
>sp|C1DAU0|RS13_LARHH 30S ribosomal protein S13 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpsM PE=3 SV=1
Length = 120
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 94/114 (82%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QHI +GL AIYGIG +RAK IC I + K+KDL D E+EKLR+EI
Sbjct: 1 MARIAGVNIPNHQHIWVGLQAIYGIGATRAKVICSAAGIEISTKVKDLTDAEMEKLRDEI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+KF IEGDLRRE +MNIKRL+DL CYRG RHR+ LPCRGQRTRTNARTRKGPR+
Sbjct: 61 AKFTIEGDLRREVTMNIKRLMDLGCYRGFRHRRGLPCRGQRTRTNARTRKGPRK 114
>sp|A1W330|RS13_ACISJ 30S ribosomal protein S13 OS=Acidovorax sp. (strain JS42) GN=rpsM
PE=3 SV=1
Length = 121
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 102/121 (84%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP +QH IGLTAIYGIGR+RA+KICE I+ +KK+K+L D +LEK+R++I
Sbjct: 1 MARIAGINIPPHQHTEIGLTAIYGIGRTRARKICEACGIAYSKKVKELTDADLEKIRDQI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
++F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+ A +L+
Sbjct: 61 AQFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKGAAALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|B9MBV9|RS13_ACIET 30S ribosomal protein S13 OS=Acidovorax ebreus (strain TPSY)
GN=rpsM PE=3 SV=1
Length = 121
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 102/121 (84%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP +QH IGLTAIYGIGR+RA+KICE I+ +KK+K+L D +LEK+R++I
Sbjct: 1 MARIAGINIPPHQHTEIGLTAIYGIGRTRARKICEACGIAYSKKVKELTDADLEKIRDQI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
++F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+ A +L+
Sbjct: 61 AQFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKGAAALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q7VTA8|RS13_BORPE 30S ribosomal protein S13 OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=rpsM PE=3 SV=1
Length = 121
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 97/121 (80%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+GIGR+RA+KICE + TKK+KDL D ELE++RE I
Sbjct: 1 MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKVKDLTDAELERIREHI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
F +EGDLRRE ++IKRLIDL YRG+RH++ LP RGQRTRTNARTRKGPRRAA SL+
Sbjct: 61 GVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q7W2D2|RS13_BORPA 30S ribosomal protein S13 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rpsM PE=3 SV=1
Length = 121
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 97/121 (80%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+GIGR+RA+KICE + TKK+KDL D ELE++RE I
Sbjct: 1 MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKVKDLTDAELERIREHI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
F +EGDLRRE ++IKRLIDL YRG+RH++ LP RGQRTRTNARTRKGPRRAA SL+
Sbjct: 61 GVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q7WRA0|RS13_BORBR 30S ribosomal protein S13 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rpsM PE=3 SV=1
Length = 121
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 97/121 (80%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+GIGR+RA+KICE + TKK+KDL D ELE++RE I
Sbjct: 1 MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKVKDLTDAELERIREHI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
F +EGDLRRE ++IKRLIDL YRG+RH++ LP RGQRTRTNARTRKGPRRAA SL+
Sbjct: 61 GVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q47J80|RS13_DECAR 30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB)
GN=rpsM PE=3 SV=1
Length = 120
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 98/115 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN+QH I LTAI+GIGR+RA+KIC+ + K+KDL+D+++++LR+E+
Sbjct: 1 MARIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRA 115
KF +EGDLRRE +MNIKRL+DL CYRG+RHRK LPCRGQRTRTNARTRKGPR+A
Sbjct: 61 GKFTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKA 115
>sp|Q2L248|RS13_BORA1 30S ribosomal protein S13 OS=Bordetella avium (strain 197N) GN=rpsM
PE=3 SV=1
Length = 121
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 97/121 (80%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+G+GR+RA+KICE + TKK+KDL D ELE++RE +
Sbjct: 1 MARIAGINIPPQQHAEIGLTAIFGVGRTRARKICEAAGVPVTKKVKDLTDAELERIREHL 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
F +EGDLRRE ++IKRLIDL YRG+RH++ LP RGQRTRTNARTRKGPRRAA SL+
Sbjct: 61 GVFTVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A9IHS0|RS13_BORPD 30S ribosomal protein S13 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rpsM PE=3 SV=1
Length = 121
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 97/121 (80%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP QH IGLTAI+GIGR+RA+KICE + +KK+KDL D ELE++RE +
Sbjct: 1 MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAANVPLSKKVKDLTDAELERIREHV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
F +EGDLRRE ++IKRLIDL YRG+RH++ LP RGQRTRTNARTRKGPRRAA SL+
Sbjct: 61 GVFTVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|A1KB04|RS13_AZOSB 30S ribosomal protein S13 OS=Azoarcus sp. (strain BH72) GN=rpsM
PE=3 SV=1
Length = 120
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 98/115 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H I LTAIYGIGRSRA+KIC+ + + KIKDL ++++EKLR+E+
Sbjct: 1 MARIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAAGVVRSAKIKDLTESDMEKLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRA 115
+F++EGDLRRE +MNIKRL+DL CYRG+RHR+ LP RGQRTRTNARTRKGPR+A
Sbjct: 61 GRFVVEGDLRREVTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKA 115
>sp|A1WK95|RS13_VEREI 30S ribosomal protein S13 OS=Verminephrobacter eiseniae (strain
EF01-2) GN=rpsM PE=3 SV=1
Length = 121
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 101/121 (83%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP ++H IGLTAI+GIGR+RA+KIC+ + I+ +KKIKDL D +LEK+R +I
Sbjct: 1 MARIAGINIPPHKHAEIGLTAIFGIGRNRARKICDASGIAYSKKIKDLTDGDLEKIRVQI 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
+F IEGDLRRE +MNIKRL+D+ CYRG RHR+ LP RGQRTRTNARTRKGPR+ A +L+
Sbjct: 61 EQFTIEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPVRGQRTRTNARTRKGPRKGAAALK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>sp|Q5P310|RS13_AROAE 30S ribosomal protein S13 OS=Aromatoleum aromaticum (strain EbN1)
GN=rpsM PE=3 SV=1
Length = 120
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 99/115 (86%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIPN++H I LTAIYGIGRSRA+KIC+ + + K+KDL ++++E+LR+E+
Sbjct: 1 MARIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRA 115
+KFI+EGDLRRE +MNIKRL+DL CYRG+RHR+ LP RGQRTRTNARTRKGPR+A
Sbjct: 61 AKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKA 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,127,706
Number of Sequences: 539616
Number of extensions: 1458643
Number of successful extensions: 7277
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 5968
Number of HSP's gapped (non-prelim): 936
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)