Query psy8858
Match_columns 121
No_of_seqs 130 out of 937
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:09:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_M 30S ribosomal protein S 100.0 2.1E-56 7.2E-61 314.8 4.7 121 1-121 1-122 (126)
2 3r8n_M 30S ribosomal protein S 100.0 6.4E-54 2.2E-58 297.8 6.6 113 2-114 1-113 (114)
3 2xzm_M RPS18E; ribosome, trans 100.0 3.6E-51 1.2E-55 296.8 7.7 119 1-121 14-155 (155)
4 3j20_O 30S ribosomal protein S 100.0 9.8E-51 3.4E-55 292.6 7.1 119 1-121 7-148 (148)
5 3iz6_M 40S ribosomal protein S 100.0 4.2E-50 1.5E-54 290.4 6.2 110 1-110 12-144 (152)
6 3u5c_S 40S ribosomal protein S 100.0 1.4E-49 4.7E-54 286.1 8.5 110 1-110 14-146 (146)
7 3bbn_M Ribosomal protein S13; 100.0 1.5E-46 5.3E-51 269.0 -3.3 100 1-111 46-145 (145)
8 1mu5_A Type II DNA topoisomera 96.9 0.00093 3.2E-08 55.1 4.5 51 14-64 255-305 (471)
9 1k3x_A Endonuclease VIII; hydr 96.7 0.0019 6.6E-08 49.4 5.1 50 13-62 151-203 (262)
10 1ee8_A MUTM (FPG) protein; bet 96.7 0.0019 6.7E-08 49.6 5.1 50 12-61 143-195 (266)
11 1k82_A Formamidopyrimidine-DNA 96.7 0.002 6.8E-08 49.6 5.1 51 12-62 150-203 (268)
12 2xzf_A Formamidopyrimidine-DNA 96.7 0.002 6.8E-08 49.6 5.0 51 12-62 153-206 (271)
13 3u6p_A Formamidopyrimidine-DNA 96.7 0.0021 7.1E-08 49.6 5.1 51 12-62 155-208 (273)
14 3w0f_A Endonuclease 8-like 3; 96.6 0.0024 8.4E-08 49.8 5.1 52 12-63 174-228 (287)
15 3twl_A Formamidopyrimidine-DNA 96.6 0.0028 9.6E-08 49.8 5.1 50 12-61 168-220 (310)
16 3vk8_A Probable formamidopyrim 96.5 0.0027 9.4E-08 49.5 4.8 50 12-61 154-207 (295)
17 2zbk_B Type 2 DNA topoisomeras 94.3 0.056 1.9E-06 45.2 5.2 50 15-64 255-304 (530)
18 3fut_A Dimethyladenosine trans 92.9 0.092 3.1E-06 40.0 3.9 49 11-60 219-267 (271)
19 2a1j_A DNA repair endonuclease 92.9 0.064 2.2E-06 32.4 2.4 37 18-56 5-41 (63)
20 1tdh_A NEI endonuclease VIII-l 92.3 0.016 5.5E-07 46.6 -1.1 40 12-51 158-200 (364)
21 1kft_A UVRC, excinuclease ABC 92.2 0.044 1.5E-06 34.0 1.1 33 6-38 13-45 (78)
22 3arc_U Photosystem II 12 kDa e 91.4 0.14 4.8E-06 33.7 2.9 58 10-67 19-79 (97)
23 1qyr_A KSGA, high level kasuga 91.2 0.16 5.3E-06 38.2 3.4 45 11-61 205-249 (252)
24 1s5l_U Photosystem II 12 kDa e 89.2 0.32 1.1E-05 33.9 3.3 55 12-66 58-115 (134)
25 1z00_B DNA repair endonuclease 89.2 0.17 5.8E-06 32.4 1.8 40 15-56 16-55 (84)
26 1z00_A DNA excision repair pro 87.7 0.19 6.4E-06 31.7 1.3 25 14-38 16-40 (89)
27 2a1j_B DNA excision repair pro 87.4 0.2 6.8E-06 31.8 1.3 25 14-38 29-53 (91)
28 3ftd_A Dimethyladenosine trans 86.4 0.48 1.6E-05 35.3 3.1 40 12-61 206-245 (249)
29 3fhf_A Mjogg, N-glycosylase/DN 86.3 1.3 4.5E-05 32.7 5.4 25 15-39 122-147 (214)
30 2duy_A Competence protein come 86.1 0.58 2E-05 28.5 2.8 27 12-38 22-48 (75)
31 3fhg_A Mjogg, N-glycosylase/DN 86.0 0.56 1.9E-05 34.2 3.2 25 15-39 115-139 (207)
32 1x2i_A HEF helicase/nuclease; 85.8 0.29 9.9E-06 29.3 1.3 26 13-38 10-35 (75)
33 3uzu_A Ribosomal RNA small sub 85.8 0.15 5.3E-06 38.8 0.0 45 11-61 229-273 (279)
34 3tqs_A Ribosomal RNA small sub 83.8 0.28 9.6E-06 36.8 0.7 43 12-60 212-254 (255)
35 3gru_A Dimethyladenosine trans 81.4 0.55 1.9E-05 36.1 1.6 51 11-61 226-286 (295)
36 3vdp_A Recombination protein R 81.1 1.9 6.6E-05 32.1 4.4 72 15-94 24-122 (212)
37 3v76_A Flavoprotein; structura 80.8 1.8 6.1E-05 34.4 4.4 51 12-65 299-349 (417)
38 2edu_A Kinesin-like protein KI 80.2 2.6 8.8E-05 26.9 4.3 21 17-37 40-60 (98)
39 3n0u_A Probable N-glycosylase/ 80.1 1 3.5E-05 33.4 2.6 25 16-40 128-153 (219)
40 2eo2_A Adult MALE hypothalamus 79.8 1.9 6.5E-05 26.8 3.3 24 34-58 37-60 (71)
41 2gqf_A Hypothetical protein HI 79.0 1.8 6.1E-05 34.1 3.8 50 12-64 280-329 (401)
42 1qam_A ERMC' methyltransferase 78.7 1.2 4.2E-05 32.6 2.6 32 32-63 211-242 (244)
43 2nrt_A Uvrabc system protein C 78.3 1.3 4.4E-05 33.1 2.6 39 16-56 167-205 (220)
44 1ixr_A Holliday junction DNA h 78.2 1.1 3.7E-05 32.6 2.2 27 13-39 68-94 (191)
45 2ztd_A Holliday junction ATP-d 77.8 0.31 1.1E-05 36.2 -0.9 19 19-37 125-143 (212)
46 1cuk_A RUVA protein; DNA repai 75.6 0.41 1.4E-05 35.2 -0.8 25 15-39 71-95 (203)
47 1vdd_A Recombination protein R 72.4 3.7 0.00013 30.9 3.8 74 13-94 8-108 (228)
48 1pu6_A 3-methyladenine DNA gly 72.2 2.4 8.2E-05 31.1 2.7 27 15-41 119-145 (218)
49 2ztd_A Holliday junction ATP-d 71.7 2 6.9E-05 31.8 2.2 27 10-36 81-107 (212)
50 1vq8_Y 50S ribosomal protein L 70.8 0.86 3E-05 34.4 0.0 23 18-41 16-38 (241)
51 1mpg_A ALKA, 3-methyladenine D 70.7 6.2 0.00021 29.8 4.8 29 15-43 205-233 (282)
52 2abk_A Endonuclease III; DNA-r 69.3 2.4 8.1E-05 30.8 2.1 23 15-37 107-129 (211)
53 1kea_A Possible G-T mismatches 69.1 3.7 0.00013 30.0 3.2 26 16-41 114-139 (221)
54 1kg2_A A/G-specific adenine gl 69.0 2.5 8.6E-05 31.0 2.2 23 15-37 107-129 (225)
55 2bcq_A DNA polymerase lambda; 68.0 1.6 5.5E-05 34.2 1.0 30 11-41 90-119 (335)
56 4e9f_A Methyl-CPG-binding doma 67.8 3.1 0.00011 29.3 2.4 23 17-40 104-126 (161)
57 1orn_A Endonuclease III; DNA r 67.7 2.8 9.5E-05 30.9 2.2 25 15-39 111-136 (226)
58 2fmp_A DNA polymerase beta; nu 67.5 2.5 8.6E-05 33.0 2.1 40 16-56 97-140 (335)
59 3c65_A Uvrabc system protein C 66.4 1.2 4.1E-05 33.4 0.0 42 13-56 169-210 (226)
60 3b0x_A DNA polymerase beta fam 66.3 2.7 9.2E-05 35.0 2.1 28 14-41 90-117 (575)
61 2bgw_A XPF endonuclease; hydro 65.9 2.1 7.2E-05 31.0 1.2 25 15-39 160-184 (219)
62 1ixr_A Holliday junction DNA h 64.9 3.5 0.00012 29.9 2.2 21 18-38 108-128 (191)
63 1cuk_A RUVA protein; DNA repai 64.7 3.5 0.00012 30.1 2.2 20 18-37 109-128 (203)
64 2ihm_A POL MU, DNA polymerase 64.7 3 0.0001 32.9 2.0 40 17-57 102-145 (360)
65 2h56_A DNA-3-methyladenine gly 63.4 5.9 0.0002 29.2 3.3 24 14-37 135-158 (233)
66 1jms_A Terminal deoxynucleotid 62.8 3.5 0.00012 32.9 2.0 25 16-41 120-144 (381)
67 4b21_A Probable DNA-3-methylad 62.3 5.8 0.0002 29.4 3.1 33 15-47 148-181 (232)
68 4ecq_A DNA polymerase ETA; tra 62.0 7.1 0.00024 31.3 3.8 37 18-54 254-290 (435)
69 2yg9_A DNA-3-methyladenine gly 61.9 5.3 0.00018 29.3 2.8 28 15-42 144-171 (225)
70 2jhn_A ALKA, 3-methyladenine D 60.6 4.3 0.00015 31.0 2.2 31 15-47 208-240 (295)
71 3s6i_A DNA-3-methyladenine gly 59.6 7.7 0.00026 28.6 3.3 28 15-42 137-164 (228)
72 1nd9_A Translation initiation 57.6 6 0.0002 21.4 1.9 41 19-60 8-48 (49)
73 3fsp_A A/G-specific adenine gl 56.9 5.4 0.00019 31.2 2.2 23 15-37 116-138 (369)
74 2i0z_A NAD(FAD)-utilizing dehy 55.9 17 0.00058 28.5 5.0 40 25-64 331-370 (447)
75 2w9m_A Polymerase X; SAXS, DNA 55.3 5.7 0.0002 33.1 2.2 25 15-40 95-119 (578)
76 3i0w_A 8-oxoguanine-DNA-glycos 55.2 7.4 0.00025 29.7 2.7 43 15-60 209-251 (290)
77 2xhi_A N-glycosylase/DNA lyase 54.6 8.6 0.00029 30.3 3.0 24 14-37 250-273 (360)
78 4gfj_A Topoisomerase V; helix- 52.2 7.5 0.00026 32.5 2.3 23 16-38 467-489 (685)
79 1zq9_A Probable dimethyladenos 51.8 23 0.00078 26.3 4.9 33 29-62 247-279 (285)
80 2i5h_A Hypothetical protein AF 51.8 7.9 0.00027 28.6 2.2 19 18-36 133-151 (205)
81 2kp7_A Crossover junction endo 50.6 9.5 0.00032 24.2 2.2 19 19-37 60-78 (87)
82 3q8k_A Flap endonuclease 1; he 49.0 9 0.00031 29.9 2.3 18 21-38 236-253 (341)
83 3n5n_X A/G-specific adenine DN 48.9 8.5 0.00029 29.6 2.1 22 16-37 127-149 (287)
84 1exn_A 5'-exonuclease, 5'-nucl 48.7 9 0.00031 29.5 2.2 18 21-38 207-224 (290)
85 1im4_A DBH; DNA polymerase PAL 48.6 13 0.00044 27.1 3.0 32 19-51 186-217 (221)
86 1jx4_A DNA polymerase IV (fami 48.0 18 0.00063 27.8 3.9 35 19-54 180-214 (352)
87 3dp5_A OMCF, cytochrome C fami 46.0 15 0.0005 22.8 2.6 17 47-63 81-98 (99)
88 1yub_A Ermam, rRNA methyltrans 45.4 11 0.00039 27.0 2.3 30 34-63 212-241 (245)
89 1c75_A Cytochrome C-553; heme, 44.9 21 0.00073 20.3 3.1 20 43-62 50-69 (71)
90 2bcq_A DNA polymerase lambda; 43.6 9.9 0.00034 29.6 1.8 32 18-49 58-89 (335)
91 2zxy_A Cytochrome C552, cytoch 43.3 15 0.00051 21.4 2.2 17 46-62 69-85 (87)
92 4dez_A POL IV 1, DNA polymeras 42.9 17 0.00056 28.1 2.9 37 18-55 179-215 (356)
93 1ayg_A Cytochrome C-552; elect 42.8 18 0.00061 21.1 2.5 20 43-62 59-78 (80)
94 2d0s_A Cytochrome C, cytochrom 42.8 17 0.00058 21.1 2.4 17 46-62 61-77 (79)
95 2exv_A Cytochrome C-551; alpha 41.8 19 0.00064 20.9 2.5 20 43-62 61-80 (82)
96 3bq0_A POL IV, DBH, DNA polyme 41.6 17 0.00059 27.9 2.9 35 19-54 181-215 (354)
97 1rxw_A Flap structure-specific 41.2 13 0.00046 28.6 2.2 18 21-38 239-256 (336)
98 1kx2_A Mono-heme C-type cytoch 41.0 20 0.00067 21.2 2.5 17 46-62 63-79 (81)
99 1ci4_A Protein (barrier-TO-aut 40.8 21 0.00071 23.0 2.7 24 17-41 18-41 (89)
100 3osn_A DNA polymerase IOTA; ho 40.8 14 0.00049 29.4 2.4 36 19-55 236-271 (420)
101 3ory_A Flap endonuclease 1; hy 39.6 15 0.00051 29.0 2.2 18 21-38 255-272 (363)
102 3bqs_A Uncharacterized protein 39.5 22 0.00075 22.7 2.7 23 18-41 5-27 (93)
103 3f2b_A DNA-directed DNA polyme 39.4 25 0.00084 31.8 3.8 58 14-89 964-1021(1041)
104 1a56_A C-551, ferricytochrome 39.2 15 0.00051 21.5 1.8 17 46-62 63-79 (81)
105 2hnh_A DNA polymerase III alph 39.0 55 0.0019 29.0 5.9 46 13-58 829-884 (910)
106 2h1r_A Dimethyladenosine trans 37.9 40 0.0014 25.2 4.3 32 30-62 260-291 (299)
107 1cch_A Cytochrome C551; electr 37.3 25 0.00084 20.3 2.5 16 47-62 65-80 (82)
108 3e1s_A Exodeoxyribonuclease V, 37.2 7.5 0.00026 32.3 0.1 26 17-42 44-69 (574)
109 2lmt_A Calmodulin-related prot 37.0 15 0.00053 23.7 1.7 20 45-64 1-20 (148)
110 3mfi_A DNA polymerase ETA; DNA 37.0 12 0.0004 31.0 1.3 29 17-45 307-335 (520)
111 1c53_A Cytochrome C553; electr 36.4 21 0.00073 20.7 2.1 16 46-61 62-77 (79)
112 1j03_A Putative steroid bindin 36.3 48 0.0016 21.3 4.0 33 31-63 55-90 (102)
113 2izo_A FEN1, flap structure-sp 35.6 18 0.00061 28.1 2.1 18 21-38 238-255 (346)
114 1cno_A Cytochrome C552; electr 35.5 28 0.00096 20.5 2.6 18 46-63 65-82 (87)
115 3ph2_B Cytochrome C6; photosyn 35.4 27 0.00091 20.2 2.5 17 46-62 64-80 (86)
116 2zzs_A Cytochrome C554; C-type 35.3 27 0.00093 21.2 2.6 17 46-62 85-101 (103)
117 2llk_A Cyclin-D-binding MYB-li 34.8 35 0.0012 20.7 3.0 27 38-64 16-42 (73)
118 3dr0_A Cytochrome C6; photosyn 34.6 25 0.00085 20.6 2.3 17 46-62 70-86 (93)
119 1gks_A Cytochrome C551; haloph 34.6 24 0.00082 20.6 2.2 16 46-61 60-75 (78)
120 1ul1_X Flap endonuclease-1; pr 34.4 19 0.00064 28.4 2.1 18 21-38 236-253 (379)
121 1dgs_A DNA ligase; AMP complex 34.3 15 0.0005 31.6 1.5 34 21-54 445-478 (667)
122 1cc5_A Cytochrome C5; electron 34.2 28 0.00096 20.8 2.5 15 47-61 67-81 (83)
123 2w9m_A Polymerase X; SAXS, DNA 32.9 16 0.00053 30.5 1.4 42 18-60 132-173 (578)
124 3dmi_A Cytochrome C6; electron 32.9 31 0.0011 20.1 2.5 16 47-62 66-81 (88)
125 1wve_C 4-cresol dehydrogenase 32.6 41 0.0014 19.6 3.0 18 46-63 56-73 (80)
126 2zkr_i 60S ribosomal protein L 31.9 1.2E+02 0.004 21.4 5.7 58 26-83 74-139 (165)
127 1w2l_A Cytochrome oxidase subu 31.9 29 0.00098 20.7 2.3 17 46-62 81-97 (99)
128 1f1f_A Cytochrome C6; heme, pr 31.7 33 0.0011 20.0 2.5 17 46-62 67-83 (89)
129 1c6r_A Cytochrome C6; electron 31.5 33 0.0011 20.0 2.5 17 46-62 66-82 (89)
130 2owo_A DNA ligase; protein-DNA 31.5 27 0.00091 30.0 2.6 37 20-56 449-485 (671)
131 1gdv_A Cytochrome C6; RED ALGA 31.3 34 0.0012 19.7 2.5 16 47-62 64-79 (85)
132 2bgw_A XPF endonuclease; hydro 30.9 25 0.00086 25.1 2.1 21 18-38 195-215 (219)
133 2fmp_A DNA polymerase beta; nu 30.8 25 0.00086 27.3 2.2 21 18-38 58-78 (335)
134 1a76_A Flap endonuclease-1 pro 30.7 25 0.00087 26.8 2.2 17 21-38 229-245 (326)
135 1qa6_A Ribosomal protein L11; 29.9 92 0.0031 18.6 6.3 47 29-75 5-57 (67)
136 1b43_A Protein (FEN-1); nuclea 29.6 21 0.00071 27.5 1.5 18 21-38 241-258 (340)
137 2zet_C Melanophilin; complex, 29.5 1E+02 0.0036 21.2 5.1 19 42-60 11-29 (153)
138 2ihm_A POL MU, DNA polymerase 29.2 29 0.00099 27.2 2.3 21 18-38 62-82 (360)
139 1ls9_A Cytochrome C6; omega lo 29.2 36 0.0012 20.0 2.4 16 46-61 68-83 (91)
140 2zon_G Cytochrome C551; nitrit 29.0 38 0.0013 19.8 2.4 16 47-62 69-84 (87)
141 3qe9_Y Exonuclease 1; exonucle 29.0 26 0.00088 27.4 2.0 19 20-38 228-246 (352)
142 1cyi_A Cytochrome C6, cytochro 28.8 37 0.0013 19.9 2.4 17 46-62 65-81 (90)
143 2blf_B SORB, sulfite\:cytochro 28.8 40 0.0014 20.3 2.5 37 24-60 19-57 (81)
144 1mms_A Protein (ribosomal prot 28.7 1.4E+02 0.0048 20.4 5.5 50 27-76 72-127 (140)
145 3cu4_A Cytochrome C family pro 28.6 36 0.0012 19.8 2.2 15 47-61 67-81 (85)
146 3im1_A Protein SNU246, PRE-mRN 28.6 31 0.0011 26.3 2.4 37 18-55 158-194 (328)
147 2din_A Cell division cycle 5-l 27.8 69 0.0024 18.4 3.4 26 39-64 3-28 (66)
148 3cp5_A Cytochrome C; electron 27.7 1E+02 0.0036 19.0 4.6 21 42-62 99-119 (124)
149 3ivp_A Putative transposon-rel 27.6 97 0.0033 19.5 4.4 20 24-43 51-70 (126)
150 1hc8_A Ribosomal protein L11; 27.1 1.1E+02 0.0038 18.7 5.5 49 28-76 9-63 (76)
151 2ce0_A Cytochrome C6; chloropl 26.2 41 0.0014 20.3 2.3 17 46-62 77-93 (105)
152 3doa_A Fibrinogen binding prot 26.0 35 0.0012 25.8 2.2 26 15-40 190-217 (288)
153 2r6f_A Excinuclease ABC subuni 25.8 58 0.002 29.2 3.8 32 27-58 336-367 (972)
154 1jms_A Terminal deoxynucleotid 25.7 37 0.0013 26.9 2.3 21 18-38 81-101 (381)
155 2o3f_A Putative HTH-type trans 25.1 43 0.0015 21.5 2.3 23 19-41 45-67 (111)
156 3fgx_A Rbstp2171; structural g 24.9 14 0.00046 24.9 -0.3 44 5-48 70-114 (114)
157 1jr2_A Uroporphyrinogen-III sy 24.6 89 0.0031 22.8 4.3 31 20-52 115-145 (286)
158 1wn8_A Kalata B3/B6, oantr pro 24.4 22 0.00075 17.5 0.5 7 93-99 19-25 (26)
159 2k6m_S Supervillin; SVHP, HP, 24.1 41 0.0014 20.3 1.9 20 37-56 22-41 (67)
160 2d9a_A B-MYB, MYB-related prot 23.5 1E+02 0.0035 17.2 3.5 27 38-64 1-27 (60)
161 3ku8_A GYRA14, DNA gyrase subu 23.4 1.9E+02 0.0065 20.1 5.9 33 21-60 105-137 (156)
162 2aq4_A DNA repair protein REV1 23.3 36 0.0012 27.1 1.9 24 18-41 242-266 (434)
163 3b0x_A DNA polymerase beta fam 23.2 44 0.0015 27.6 2.5 41 19-60 130-170 (575)
164 1yu8_X Villin; alpha helix, 3- 23.0 53 0.0018 19.8 2.2 20 37-56 22-41 (67)
165 2l4d_A SCO1/SENC family protei 22.5 53 0.0018 19.8 2.3 17 46-62 79-95 (110)
166 1pcf_A P15, transcriptional co 22.2 24 0.00083 21.3 0.5 21 40-60 36-56 (66)
167 1i4w_A Mitochondrial replicati 22.0 21 0.00073 28.0 0.3 51 11-63 282-333 (353)
168 3iwf_A Transcription regulator 21.8 51 0.0017 21.1 2.1 22 19-40 41-62 (107)
169 1b22_A DNA repair protein RAD5 21.7 34 0.0011 22.6 1.2 20 18-37 59-78 (114)
170 3gqc_A DNA repair protein REV1 21.7 72 0.0025 26.2 3.4 37 18-55 316-352 (504)
171 1t94_A Polymerase (DNA directe 21.6 55 0.0019 26.1 2.7 21 19-40 284-304 (459)
172 4fxe_A Antitoxin RELB; toxin/a 21.4 39 0.0013 20.8 1.4 16 28-43 14-29 (79)
173 4f4y_A POL IV, DNA polymerase 21.3 55 0.0019 25.4 2.5 36 18-54 180-215 (362)
174 1zbd_B Rabphilin-3A; G protein 21.3 83 0.0028 21.2 3.2 20 41-60 3-22 (134)
175 2vf7_A UVRA2, excinuclease ABC 21.2 68 0.0023 28.1 3.3 30 28-57 191-220 (842)
176 1qzp_A Dematin; villin headpie 21.2 45 0.0015 20.1 1.6 20 37-56 23-42 (68)
177 1cja_A Protein (actin-fragmin 21.0 96 0.0033 24.4 3.9 49 10-60 90-139 (342)
178 3r1f_A ESX-1 secretion-associa 20.8 76 0.0026 21.0 2.9 22 26-47 60-81 (135)
179 1m70_A Cytochrome C4; electron 20.1 69 0.0024 21.5 2.6 17 46-62 172-188 (190)
No 1
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=2.1e-56 Score=314.79 Aligned_cols=121 Identities=53% Similarity=0.934 Sum_probs=117.6
Q ss_pred CceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh-hcccchhhHHHHHHHHHH
Q psy8858 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS-KFIIEGDLRREFSMNIKR 79 (121)
Q Consensus 1 mv~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~-~~~i~~~L~~~~~~~I~r 79 (121)
|+||+|+|||++|.|++||++|||||+++|..||+.+||||++++++||++|+++|.++|+ +|.+|+||++++++||+|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIkR 80 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKR 80 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999996 699999999999999999
Q ss_pred HHhhccccccccCCCCCcCCccccccccccCCCCcccccccC
Q psy8858 80 LIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121 (121)
Q Consensus 80 l~~i~~yRG~RH~~gLpVRGQRT~tNart~k~~~~~~~~~~~ 121 (121)
|++|+||||+||.+|||||||||||||||+|+++++|+++||
T Consensus 81 L~~I~~YRG~RH~~GLPVRGQRTkTNaRTrkg~~~~v~~kkk 122 (126)
T 2vqe_M 81 LMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK 122 (126)
T ss_dssp HHHTTCHHHHHHHTTCCSSSCCCSSCCHHHHCSCCCCCCCCS
T ss_pred HHHHHHHhhhhhccCCcCCCccCccccccCCCcccccccccC
Confidence 999999999999999999999999999999999999998775
No 2
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=6.4e-54 Score=297.82 Aligned_cols=113 Identities=58% Similarity=1.086 Sum_probs=111.2
Q ss_pred ceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q psy8858 2 TRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLI 81 (121)
Q Consensus 2 v~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~~I~rl~ 81 (121)
.||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++|.+|+||++++++||+||+
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~~~ie~dLr~~~~~dI~RL~ 80 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM 80 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCCcCCccccccccccCCCCc
Q psy8858 82 DLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114 (121)
Q Consensus 82 ~i~~yRG~RH~~gLpVRGQRT~tNart~k~~~~ 114 (121)
+|+||||+||.+|||||||||||||||+|++++
T Consensus 81 ~I~~yRG~RH~~GLpVRGQrTkTnaRTrkg~~~ 113 (114)
T 3r8n_M 81 DLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 113 (114)
T ss_dssp HHTCHHHHHHHTTSCCSSCCSSSCCHHHHCSCC
T ss_pred HhceeeeecccCCCCCCCCCCCCcccccCCCCC
Confidence 999999999999999999999999999999876
No 3
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=3.6e-51 Score=296.84 Aligned_cols=119 Identities=30% Similarity=0.432 Sum_probs=112.1
Q ss_pred CceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh------------------
Q psy8858 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK------------------ 62 (121)
Q Consensus 1 mv~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~------------------ 62 (121)
|+||+|||||++|+|.+|||+|||||+.+|..||+++||||++++++||++|+++|.++|++
T Consensus 14 m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~iP~w~lNr~kD~~ 93 (155)
T 2xzm_M 14 IHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPTWLLNRINDFK 93 (155)
T ss_dssp CCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHCCCGGGCSEEEETT
T ss_pred hHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccCCCHHHhhcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999965
Q ss_pred -----cccchhhHHHHHHHHHHHHhhccccccccCCCCCcCCccccccccccCCCCcccccccC
Q psy8858 63 -----FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121 (121)
Q Consensus 63 -----~~i~~~L~~~~~~~I~rl~~i~~yRG~RH~~gLpVRGQRT~tNart~k~~~~~~~~~~~ 121 (121)
|.+|+||++++++||+||++|+||||+||.+|||||||||||||||++ ..+|.++||
T Consensus 94 ~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRtg~--tvGv~kkk~ 155 (155)
T 2xzm_M 94 DGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRHGV--VCGVVRKNK 155 (155)
T ss_dssp TEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCSSC--CCSSCCCC-
T ss_pred CCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCCcc--cccccccCC
Confidence 789999999999999999999999999999999999999999999986 335666654
No 4
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.8e-51 Score=292.65 Aligned_cols=119 Identities=34% Similarity=0.561 Sum_probs=111.4
Q ss_pred CceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh---c--------------
Q psy8858 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK---F-------------- 63 (121)
Q Consensus 1 mv~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~---~-------------- 63 (121)
|+||+|||||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|.++|++ |
T Consensus 7 m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr~kD~~ 86 (148)
T 3j20_O 7 IVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYE 86 (148)
T ss_dssp CEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSEEEETT
T ss_pred hHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999954 3
Q ss_pred ------ccchhhHHHHHHHHHHHHhhccccccccCCCCCcCCccccccccccCCCCcccccccC
Q psy8858 64 ------IIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121 (121)
Q Consensus 64 ------~i~~~L~~~~~~~I~rl~~i~~yRG~RH~~gLpVRGQRT~tNart~k~~~~~~~~~~~ 121 (121)
.+|+||++++++||+||++|+||||+||.+|||||||||||||||++ ..+|.++|+
T Consensus 87 ~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~--tvgv~kkk~ 148 (148)
T 3j20_O 87 TGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQ--TVGVSRKKK 148 (148)
T ss_dssp TEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCSSC--CCCCSSCCC
T ss_pred CCceeEEechHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCcCc--ccceeccCC
Confidence 68999999999999999999999999999999999999999999765 555666653
No 5
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-50 Score=290.43 Aligned_cols=110 Identities=27% Similarity=0.530 Sum_probs=105.6
Q ss_pred CceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh---ccc------------
Q psy8858 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK---FII------------ 65 (121)
Q Consensus 1 mv~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~---~~i------------ 65 (121)
|+||+|||||++|+|.+|||+|||||+.+|..||+++||||++++++||++|+++|.++|++ |.|
T Consensus 12 m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~~ 91 (152)
T 3iz6_M 12 ILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYK 91 (152)
T ss_dssp CCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSCC
T ss_pred HHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcchhhhhhhcccC
Confidence 89999999999999999999999999999999999999999999999999999999999953 654
Q ss_pred --------chhhHHHHHHHHHHHHhhccccccccCCCCCcCCccccccccccC
Q psy8858 66 --------EGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110 (121)
Q Consensus 66 --------~~~L~~~~~~~I~rl~~i~~yRG~RH~~gLpVRGQRT~tNart~k 110 (121)
++||++++++||+||++|+||||+||.+|||||||||||||||++
T Consensus 92 ~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRtg~ 144 (152)
T 3iz6_M 92 DGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGK 144 (152)
T ss_dssp CCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHHHH
T ss_pred CcceeeechhHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCCce
Confidence 599999999999999999999999999999999999999999963
No 6
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=1.4e-49 Score=286.10 Aligned_cols=110 Identities=29% Similarity=0.552 Sum_probs=105.9
Q ss_pred CceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh---hccc------------
Q psy8858 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS---KFII------------ 65 (121)
Q Consensus 1 mv~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~---~~~i------------ 65 (121)
|+||+|||||++|+|.+|||+|||||+.+|..||+++||||++++++||++|+++|.++|+ +|.|
T Consensus 14 ~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~kD~~ 93 (146)
T 3u5c_S 14 ILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDIT 93 (146)
T ss_dssp SBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCSTTCTBCSCSS
T ss_pred hhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccHHHhhhhhccc
Confidence 8999999999999999999999999999999999999999999999999999999999995 3554
Q ss_pred --------chhhHHHHHHHHHHHHhhccccccccCCCCCcCCccccccccccC
Q psy8858 66 --------EGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110 (121)
Q Consensus 66 --------~~~L~~~~~~~I~rl~~i~~yRG~RH~~gLpVRGQRT~tNart~k 110 (121)
|+||++++++||+||++|+||||+||.+|||||||||||||||.+
T Consensus 94 ~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~g~ 146 (146)
T 3u5c_S 94 DGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRRRA 146 (146)
T ss_dssp SCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCSCC
T ss_pred ccchheeehHHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999864
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.5e-46 Score=269.02 Aligned_cols=100 Identities=46% Similarity=0.734 Sum_probs=95.5
Q ss_pred CceeeCccCCCCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q psy8858 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRL 80 (121)
Q Consensus 1 mv~i~~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~~I~rl 80 (121)
|+||+|||||++|.|.+||++|||||+.+|.+||+++|| |++++++|+|+|+++|.++ ++++.+||+||
T Consensus 46 m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~----------Rr~v~~nIkRL 114 (145)
T 3bbn_M 46 CIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE----------KRFNRVAIERL 114 (145)
T ss_dssp -CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS----------CCCCSTTTHHH
T ss_pred eeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH----------HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 7999999999999999876 66689999999
Q ss_pred HhhccccccccCCCCCcCCccccccccccCC
Q psy8858 81 IDLSCYRGIRHRKSLPCRGQRTRTNARTRKG 111 (121)
Q Consensus 81 ~~i~~yRG~RH~~gLpVRGQRT~tNart~k~ 111 (121)
++|+||||+||.+|||||||||||||||+|+
T Consensus 115 ~~I~~YRGlRH~~GLPVRGQRTkTNaRTrKg 145 (145)
T 3bbn_M 115 KEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145 (145)
T ss_dssp HCCCCSCCTTTTTTCCSSSCCTTTCCCSSCC
T ss_pred hhhceEeeeecccCCcCCCccCccccccCCC
Confidence 9999999999999999999999999999875
No 8
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=96.86 E-value=0.00093 Score=55.14 Aligned_cols=51 Identities=27% Similarity=0.422 Sum_probs=45.7
Q ss_pred eeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
...|...++.+||..+|.+||+.+|++|++++.+|+++|+..|.++|+++.
T Consensus 255 ~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 305 (471)
T 1mu5_A 255 IKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYE 305 (471)
T ss_dssp HHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCC
T ss_pred hHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhcc
Confidence 344555789999999999999999999999999999999999999997664
No 9
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=96.73 E-value=0.0019 Score=49.45 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=44.0
Q ss_pred eeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh
Q psy8858 13 QHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 13 k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
.+|.-+| +-|-|||.-.|.++|-.+||+|...+++||++|++.|.+.+..
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 5566666 4569999999999999999999999999999999999998843
No 10
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.72 E-value=0.0019 Score=49.60 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=44.1
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~ 61 (121)
+.+|.-+| +-|-|||.-.|.++|-.+||+|...+++|+++|++.|.+.+.
T Consensus 143 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 195 (266)
T 1ee8_A 143 ARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALR 195 (266)
T ss_dssp CSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHH
T ss_pred CccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 34555555 578999999999999999999999999999999999999884
No 11
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.71 E-value=0.002 Score=49.57 Aligned_cols=51 Identities=22% Similarity=0.155 Sum_probs=44.7
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
+.+|.-+| +-|-|||.-.|.++|-.+||+|...+++|+++|++.|.+.+..
T Consensus 150 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (268)
T 1k82_A 150 KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268)
T ss_dssp CSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 44555566 5789999999999999999999999999999999999998843
No 12
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=96.70 E-value=0.002 Score=49.58 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=44.5
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
+.+|.-+| +-|-|||.-.|.++|-.+||+|...+++|+++|++.|.+.+..
T Consensus 153 ~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 153 TKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 34555555 5689999999999999999999999999999999999998843
No 13
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=96.69 E-value=0.0021 Score=49.60 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=44.9
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
+.+|.-+| +-|-|||.-.|.++|-.+||+|...+++|+++|++.|.+.+..
T Consensus 155 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 155 KRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred cchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 45555556 5789999999999999999999999999999999999998843
No 14
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=96.63 E-value=0.0024 Score=49.84 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=46.1
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhc
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKF 63 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~ 63 (121)
+.+|..+| +-|-|||...+.++|-.+||+|...+++|+++|++.|.+.+...
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~V 228 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRDF 228 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHHH
Confidence 34566666 67899999999999999999999999999999999999999655
No 15
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=96.56 E-value=0.0028 Score=49.81 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=44.0
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~ 61 (121)
+.+|.-+| +-|-|||.-.|.++|-.+||+|...+++|+++|++.|.+.+.
T Consensus 168 ~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~ 220 (310)
T 3twl_A 168 KITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIK 220 (310)
T ss_dssp CSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred cchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 45565556 468999999999999999999999999999999999998884
No 16
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=96.53 E-value=0.0027 Score=49.51 Aligned_cols=50 Identities=30% Similarity=0.266 Sum_probs=43.9
Q ss_pred Ceeeeeeh---hc-ccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh
Q psy8858 12 NQHIIIGL---TA-IYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 12 ~k~v~~aL---t~-I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~ 61 (121)
+.+|.-+| +- |-|||...|.++|-.+||+|...+++|+++|++.|.+.+.
T Consensus 154 ~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (295)
T 3vk8_A 154 KQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK 207 (295)
T ss_dssp CSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH
T ss_pred CchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 44555556 34 8999999999999999999999999999999999999884
No 17
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=94.29 E-value=0.056 Score=45.21 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=44.6
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
.-|.-..+-++|...|..+|+.+|++|+.++.+|+++|+..+.+++.+++
T Consensus 255 ~~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~k 304 (530)
T 2zbk_B 255 KEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKDE 304 (530)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHCC
T ss_pred HhhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhcc
Confidence 34555779999999999999999999999999999999999999996554
No 18
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=92.92 E-value=0.092 Score=40.04 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=41.5
Q ss_pred CCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 11 NNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 11 ~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
..|.+..+|..+ |.+...+..+++.+||+|+.++.+|+.+|+..|.+.+
T Consensus 219 rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 267 (271)
T 3fut_A 219 RRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGL 267 (271)
T ss_dssp TTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHH
Confidence 456777778664 4567778899999999999999999999999998877
No 19
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.88 E-value=0.064 Score=32.35 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=30.6
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L 56 (121)
.|.+|+|||+..+..+++.+| .-..+.+.|.+|+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 578999999999999999988 2346677788888766
No 20
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=92.32 E-value=0.016 Score=46.55 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=35.2
Q ss_pred Ceeeeeeh---hcccccCHHHHHHHHHHhCCCCCcccCCCCHH
Q psy8858 12 NQHIIIGL---TAIYGIGRSRAKKICEVTKISTTKKIKDLNDN 51 (121)
Q Consensus 12 ~k~v~~aL---t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~ 51 (121)
+.+|.-+| +-|-|||...|.++|-.+||+|...+++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 45566666 57899999999999999999999999999987
No 21
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.22 E-value=0.044 Score=33.97 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=21.8
Q ss_pred CccCCCCeeeeeehhcccccCHHHHHHHHHHhC
Q psy8858 6 GINIPNNQHIIIGLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 6 ~~~~~~~k~v~~aLt~I~GIG~~~A~~Ic~~lG 38 (121)
|.-+..+......|..|+|||+.+|..|++.+|
T Consensus 13 ~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 13 GLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp ----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 345566777888999999999999999999986
No 22
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.42 E-value=0.14 Score=33.71 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=42.5
Q ss_pred CCCeeeeeehhcccccCHHHHHHHHHHhCCCC---CcccCCCCHHHHHHHHHHHhhcccch
Q psy8858 10 PNNQHIIIGLTAIYGIGRSRAKKICEVTKIST---TKKIKDLNDNELEKLREEISKFIIEG 67 (121)
Q Consensus 10 ~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p---~~~~~~Ls~~qi~~L~~~l~~~~i~~ 67 (121)
+-|..-.-.|+.++|||+.+|..|.+.=++.. -..+.-+.+..+++|..++..|.++.
T Consensus 19 diNtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f~v~~ 79 (97)
T 3arc_U 19 DLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTE 79 (97)
T ss_dssp ETTTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGGEECCC
T ss_pred eCCcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhceeEecC
Confidence 33444456789999999999999999422221 22455678999999999998887743
No 23
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=91.23 E-value=0.16 Score=38.17 Aligned_cols=45 Identities=7% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh
Q psy8858 11 NNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 11 ~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~ 61 (121)
..|.+..+|+.+++ ..++..+||+|+.++.+||.+|+-.|.+.+.
T Consensus 205 rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 205 RRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp TTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 35667777766553 5578899999999999999999999998873
No 24
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=89.24 E-value=0.32 Score=33.92 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=39.8
Q ss_pred CeeeeeehhcccccCHHHHHHHHHHhCC---CCCcccCCCCHHHHHHHHHHHhhcccc
Q psy8858 12 NQHIIIGLTAIYGIGRSRAKKICEVTKI---STTKKIKDLNDNELEKLREEISKFIIE 66 (121)
Q Consensus 12 ~k~v~~aLt~I~GIG~~~A~~Ic~~lGi---~p~~~~~~Ls~~qi~~L~~~l~~~~i~ 66 (121)
|..=.-.|+.++|||+.+|..|.+--.+ +.-..+.-+++.+.+.|.+...+|.+.
T Consensus 58 NtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv~ 115 (134)
T 1s5l_U 58 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVT 115 (134)
T ss_dssp TTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTTEECC
T ss_pred cccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcceeec
Confidence 3444556889999999999999953222 223356667899999999988777663
No 25
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=89.23 E-value=0.17 Score=32.36 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=30.6
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHH
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L 56 (121)
....|..|+|||+..+..|++.+|= -..+.+.|.+|+..+
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~~FgS--l~~i~~AS~eEL~~v 55 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMHHVKN--IAELAALSQDELTSI 55 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHSSC--HHHHHHSCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCC--HHHHHHCCHHHHHHH
Confidence 3456889999999999999998872 235666677777655
No 26
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=87.70 E-value=0.19 Score=31.74 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=22.0
Q ss_pred eeeeehhcccccCHHHHHHHHHHhC
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.+..+|..|+|||+.+|..|++.+|
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~fg 40 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTFG 40 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 3456789999999999999999886
No 27
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.44 E-value=0.2 Score=31.85 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=22.1
Q ss_pred eeeeehhcccccCHHHHHHHHHHhC
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.+..+|..|.|||+.+|..|++.+|
T Consensus 29 ~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 29 RVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 3557899999999999999999987
No 28
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=86.44 E-value=0.48 Score=35.27 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=33.0
Q ss_pred CeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh
Q psy8858 12 NQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 12 ~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~ 61 (121)
.|.+..+|..+ .+..+||+|+.++.+|+.+|+..|.+.+.
T Consensus 206 rk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~ 245 (249)
T 3ftd_A 206 RKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIE 245 (249)
T ss_dssp TSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHH
Confidence 45566666553 68899999999999999999999998873
No 29
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=86.29 E-value=1.3 Score=32.69 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=20.6
Q ss_pred eeeehh-cccccCHHHHHHHHHHhCC
Q psy8858 15 IIIGLT-AIYGIGRSRAKKICEVTKI 39 (121)
Q Consensus 15 v~~aLt-~I~GIG~~~A~~Ic~~lGi 39 (121)
..-.|. +++|||+.+|..|+..+|.
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 334577 9999999999999987776
No 30
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=86.08 E-value=0.58 Score=28.47 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=21.5
Q ss_pred CeeeeeehhcccccCHHHHHHHHHHhC
Q psy8858 12 NQHIIIGLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 12 ~k~v~~aLt~I~GIG~~~A~~Ic~~lG 38 (121)
|..-...|..++|||+.+|..|.+...
T Consensus 22 N~a~~~~L~~ipGIG~~~A~~Il~~r~ 48 (75)
T 2duy_A 22 NEASLEELMALPGIGPVLARRIVEGRP 48 (75)
T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHHTCC
T ss_pred hhCCHHHHHhCCCCCHHHHHHHHHHcc
Confidence 333445688999999999999999763
No 31
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=86.03 E-value=0.56 Score=34.23 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.2
Q ss_pred eeeehhcccccCHHHHHHHHHHhCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKI 39 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi 39 (121)
..-.|.+++|||+.+|..||..+|.
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 4556889999999999999987676
No 32
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=85.80 E-value=0.29 Score=29.35 Aligned_cols=26 Identities=4% Similarity=0.054 Sum_probs=22.2
Q ss_pred eeeeeehhcccccCHHHHHHHHHHhC
Q psy8858 13 QHIIIGLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 13 k~v~~aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.....+|+.|+|||..+|..|++.+|
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~fg 35 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHFG 35 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcC
Confidence 34566789999999999999999876
No 33
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=85.77 E-value=0.15 Score=38.85 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=35.9
Q ss_pred CCeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHh
Q psy8858 11 NNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 11 ~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~ 61 (121)
..|.+..+|..+++ ..++..+||+|+.++.+||.+|+..|.+++.
T Consensus 229 rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 273 (279)
T 3uzu_A 229 RRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVA 273 (279)
T ss_dssp TTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHH
Confidence 35666677766544 3467889999999999999999999999873
No 34
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=83.85 E-value=0.28 Score=36.84 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=33.7
Q ss_pred CeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 12 NQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 12 ~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
.|.+..+|..+++ ...++.+||+|+.++.+||.+|+..|.+++
T Consensus 212 rK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 212 RKTVGNALKKLIN------PSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp TSCHHHHTTTTCC------GGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred ChHHHHHHhhhCC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 4566666766543 134688999999999999999999998875
No 35
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=81.41 E-value=0.55 Score=36.10 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=42.3
Q ss_pred CCeeeeeehhccc---ccCHHHHHHHHHHh-----CCCC--CcccCCCCHHHHHHHHHHHh
Q psy8858 11 NNQHIIIGLTAIY---GIGRSRAKKICEVT-----KIST--TKKIKDLNDNELEKLREEIS 61 (121)
Q Consensus 11 ~~k~v~~aLt~I~---GIG~~~A~~Ic~~l-----Gi~p--~~~~~~Ls~~qi~~L~~~l~ 61 (121)
..|.+..+|.+.. |+....+..+++.+ |+++ +.++.+||.+|+..|.+++.
T Consensus 226 rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~ 286 (295)
T 3gru_A 226 RNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFY 286 (295)
T ss_dssp TTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHH
T ss_pred CchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHH
Confidence 4677888887653 45577788889998 8998 99999999999999999883
No 36
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=81.10 E-value=1.9 Score=32.08 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=48.2
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcc-----------c-ch-------hhHH----
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI-----------I-EG-------DLRR---- 71 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~-----------i-~~-------~L~~---- 71 (121)
+.-+|++++|||+++|..+.-.+= .-+++++..|.++|.+.. + +. |=++
T Consensus 24 LI~~l~~LPGIG~KsA~RlA~hLL--------~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~ 95 (212)
T 3vdp_A 24 LIEELSKLPGIGPKTAQRLAFFII--------NMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHST 95 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHHHHHCEECTTTCCEESSSSCHHHHCTTSEEEE
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCcCCCCCCCCCCCCE
Confidence 445789999999999999985442 335788888888883321 0 00 0000
Q ss_pred ----HHHHHHHHHHhhccccccccCCC
Q psy8858 72 ----EFSMNIKRLIDLSCYRGIRHRKS 94 (121)
Q Consensus 72 ----~~~~~I~rl~~i~~yRG~RH~~g 94 (121)
+--.|+.-+-+.+.|+|.=|-+|
T Consensus 96 iCVVE~~~Dv~aiE~t~~y~G~YhVLg 122 (212)
T 3vdp_A 96 ICVVSHPMDVVAMEKVKEYKGVYHVLH 122 (212)
T ss_dssp EEEESSHHHHHHHHTTSCCCEEEEECS
T ss_pred EEEECCHHHHHHHHhhCccceEEEecC
Confidence 01235666778899999999887
No 37
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=80.76 E-value=1.8 Score=34.41 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=40.9
Q ss_pred CeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhccc
Q psy8858 12 NQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFII 65 (121)
Q Consensus 12 ~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~i 65 (121)
++.+...|.. .+....+..+++.+++ +++++.+|+++++..|.+.|+.+.+
T Consensus 299 ~~~~~~~l~~--~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~ 349 (417)
T 3v76_A 299 RQAVQTALAD--ILPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQVWAV 349 (417)
T ss_dssp SSBHHHHHTT--TSCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHSEEE
T ss_pred hhhHHHHHHH--HhhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcCCEE
Confidence 3444444443 3778899999999999 9999999999999999999977653
No 38
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=80.16 E-value=2.6 Score=26.93 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred eehhcccccCHHHHHHHHHHh
Q psy8858 17 IGLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~l 37 (121)
..|..|+|||...|..|++..
T Consensus 40 ~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 40 RDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHH
Confidence 357899999999999999886
No 39
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=80.07 E-value=1 Score=33.39 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=20.6
Q ss_pred eeehh-cccccCHHHHHHHHHHhCCC
Q psy8858 16 IIGLT-AIYGIGRSRAKKICEVTKIS 40 (121)
Q Consensus 16 ~~aLt-~I~GIG~~~A~~Ic~~lGi~ 40 (121)
.-.|. +++|||+.+|..+|..+|..
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~~g~~ 153 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRNTGVE 153 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 34577 99999999999999767763
No 40
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.79 E-value=1.9 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHhCCCCCcccCCCCHHHHHHHHH
Q psy8858 34 CEVTKISTTKKIKDLNDNELEKLRE 58 (121)
Q Consensus 34 c~~lGi~p~~~~~~Ls~~qi~~L~~ 58 (121)
+++|||+. ..+.+|++||+.++..
T Consensus 37 L~kLGI~k-tdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 37 LKKLGIHK-TDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHTCCC-CSTTTCCHHHHHHHHH
T ss_pred HHHcCCCC-CCcccCCHHHHhhcee
Confidence 46899995 6899999999987764
No 41
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=78.96 E-value=1.8 Score=34.07 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=40.9
Q ss_pred CeeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 12 NQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 12 ~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
++.+...|... +....+..+++..|++ ..++.+|+++|...|.+.|+.+.
T Consensus 280 ~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~ 329 (401)
T 2gqf_A 280 KQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHHWE 329 (401)
T ss_dssp TSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHCEE
T ss_pred cccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhcCE
Confidence 45555556554 6789999999999998 68899999999999999997654
No 42
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=78.73 E-value=1.2 Score=32.63 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHhCCCCCcccCCCCHHHHHHHHHHHhhc
Q psy8858 32 KICEVTKISTTKKIKDLNDNELEKLREEISKF 63 (121)
Q Consensus 32 ~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~ 63 (121)
+++..+|++|+.++.+||.+|+..|.+.+..+
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~~ 242 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKLF 242 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHHh
Confidence 35788999999999999999999999988544
No 43
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=78.32 E-value=1.3 Score=33.12 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred eeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHH
Q psy8858 16 IIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L 56 (121)
...|..|.|||+.+|+.+++.+|= -..+.+-+.+|+..+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~FgS--l~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFGS--LENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCS--HHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcCC--HHHHHhCCHHHHHHH
Confidence 456789999999999999999981 223555577776554
No 44
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=78.16 E-value=1.1 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.6
Q ss_pred eeeeeehhcccccCHHHHHHHHHHhCC
Q psy8858 13 QHIIIGLTAIYGIGRSRAKKICEVTKI 39 (121)
Q Consensus 13 k~v~~aLt~I~GIG~~~A~~Ic~~lGi 39 (121)
+.++..|.+|.|||+++|..|++.+|-
T Consensus 68 k~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 68 LALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 344446788999999999999988875
No 45
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=77.83 E-value=0.31 Score=36.22 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=9.6
Q ss_pred hhcccccCHHHHHHHHHHh
Q psy8858 19 LTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~l 37 (121)
|++++|||+++|..|+..+
T Consensus 125 L~~vpGIG~KtA~rIi~el 143 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLEL 143 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHH
Confidence 4455555555555555443
No 46
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=75.61 E-value=0.41 Score=35.24 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=17.2
Q ss_pred eeeehhcccccCHHHHHHHHHHhCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKI 39 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi 39 (121)
++..|.+|.|||+++|..|++.+|-
T Consensus 71 ~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 71 LFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 3345667777777777777777663
No 47
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=72.40 E-value=3.7 Score=30.88 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=49.2
Q ss_pred eeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcc------------cchhh-------HH--
Q psy8858 13 QHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI------------IEGDL-------RR-- 71 (121)
Q Consensus 13 k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~------------i~~~L-------~~-- 71 (121)
..+.-+|+.++|||+++|..+.-.+= ...++++..|.++|.+.. .+.|+ ++
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL--------~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~ 79 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLF--------EQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQ 79 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHS--------SSCHHHHHHHHHHHHHHHHHCEECSSSCCEESSSSCHHHHCSSSCT
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCC
Confidence 34567889999999999999985432 345788888888883321 01110 00
Q ss_pred ------HHHHHHHHHHhhccccccccCCC
Q psy8858 72 ------EFSMNIKRLIDLSCYRGIRHRKS 94 (121)
Q Consensus 72 ------~~~~~I~rl~~i~~yRG~RH~~g 94 (121)
+--.|+.-+-+.+.|+|.=|-+|
T Consensus 80 ~~iCVVE~~~Dv~aiE~t~~y~G~YhVLg 108 (228)
T 1vdd_A 80 RTICVVEEPGDVIALERSGEYRGLYHVLH 108 (228)
T ss_dssp TEEEEESSHHHHHHTTTTSSCCSEEEECS
T ss_pred CeEEEECCHHHHHHHHHhcccceEEEecC
Confidence 01235666778899999988876
No 48
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=72.22 E-value=2.4 Score=31.06 Aligned_cols=27 Identities=22% Similarity=0.082 Sum_probs=21.1
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
..-.|.+++|||+.+|..|+..+.=.|
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a~~~~ 145 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYACAKE 145 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCCCC
Confidence 344689999999999999998754334
No 49
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=71.74 E-value=2 Score=31.77 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCCeeeeeehhcccccCHHHHHHHHHH
Q psy8858 10 PNNQHIIIGLTAIYGIGRSRAKKICEV 36 (121)
Q Consensus 10 ~~~k~v~~aLt~I~GIG~~~A~~Ic~~ 36 (121)
...+.++..|.+|.|||+++|..|++.
T Consensus 81 ~~Er~lf~~L~sv~GIGpk~A~~Ils~ 107 (212)
T 2ztd_A 81 GETRDLFLTLLSVSGVGPRLAMAALAV 107 (212)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCcCHHHHHHHHHh
Confidence 344555666889999999999999853
No 50
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=70.76 E-value=0.86 Score=34.39 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=0.0
Q ss_pred ehhcccccCHHHHHHHHHHhCCCC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
.|..|.|||+.+|..|++. ||..
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~-gf~s 38 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA-GFES 38 (241)
T ss_dssp ------------------------
T ss_pred HHhcCCCCCHHHHHHHHHc-CCCC
Confidence 5667777777777777766 5543
No 51
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=70.75 E-value=6.2 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=22.9
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCCc
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTTK 43 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~ 43 (121)
+.-.|.+++|||+.+|..||...-=+|+.
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~lg~~d~ 233 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRGWQAKDV 233 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCSSC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCCCc
Confidence 45678999999999999999875444544
No 52
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=69.33 E-value=2.4 Score=30.76 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.5
Q ss_pred eeeehhcccccCHHHHHHHHHHh
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~l 37 (121)
..-.|.+++|||+.+|..|+...
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 44568999999999999999764
No 53
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=69.11 E-value=3.7 Score=29.99 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=20.8
Q ss_pred eeehhcccccCHHHHHHHHHHhCCCC
Q psy8858 16 IIGLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
.-.|.+++|||+.+|..|+....=.|
T Consensus 114 ~~~L~~lpGIG~~TA~~il~~~~~~~ 139 (221)
T 1kea_A 114 RKAILDLPGVGKYTCAAVMCLAFGKK 139 (221)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHhCCCCcHHHHHHHHHHhcCCC
Confidence 45689999999999999997754334
No 54
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=68.97 E-value=2.5 Score=30.96 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.6
Q ss_pred eeeehhcccccCHHHHHHHHHHh
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~l 37 (121)
..-.|.+++|||+.+|..|+..+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLS 129 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHh
Confidence 34578999999999999999764
No 55
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=67.99 E-value=1.6 Score=34.23 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCeeeeeehhcccccCHHHHHHHHHHhCCCC
Q psy8858 11 NNQHIIIGLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 11 ~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
..-++.-.|++|+|||+++|..+-+. |+..
T Consensus 90 ~~~p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 90 ESVPVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp TTHHHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred hhhHHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 33344444579999999999999877 8773
No 56
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=67.81 E-value=3.1 Score=29.30 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=18.2
Q ss_pred eehhcccccCHHHHHHHHHHhCCC
Q psy8858 17 IGLTAIYGIGRSRAKKICEVTKIS 40 (121)
Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lGi~ 40 (121)
-.|.+++|||+++|..++.- .++
T Consensus 104 ~~L~~LpGVG~yTAdav~~F-~~~ 126 (161)
T 4e9f_A 104 KYPIELHGIGKYGNDSYRIF-CVN 126 (161)
T ss_dssp SSGGGSTTCCHHHHHHHHHH-TSS
T ss_pred hhhhcCCCchHHHHHHHHHH-HCC
Confidence 35789999999999998753 444
No 57
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=67.71 E-value=2.8 Score=30.87 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.6
Q ss_pred eeeehhcccccCHHHHHHHHHH-hCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEV-TKI 39 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~-lGi 39 (121)
..-.|.+++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4567899999999999999976 454
No 58
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=67.48 E-value=2.5 Score=33.04 Aligned_cols=40 Identities=35% Similarity=0.371 Sum_probs=27.8
Q ss_pred eeehhcccccCHHHHHHHHHHhCCCCCcc----cCCCCHHHHHHH
Q psy8858 16 IIGLTAIYGIGRSRAKKICEVTKISTTKK----IKDLNDNELEKL 56 (121)
Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~----~~~Ls~~qi~~L 56 (121)
...|.+|+|||+++|..+.+. |+..-.. -+.|+..|..-|
T Consensus 97 l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl 140 (335)
T 2fmp_A 97 INFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGL 140 (335)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHH
Confidence 446799999999999999888 9874211 345555444433
No 59
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=66.39 E-value=1.2 Score=33.38 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=0.0
Q ss_pred eeeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHH
Q psy8858 13 QHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 13 k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L 56 (121)
......|..|.|||+.+|+.+++.+|=- ..+.+-|.+|+..+
T Consensus 169 ~~~~s~L~~IpGIG~k~ak~Ll~~FGSl--~~i~~As~eeL~~V 210 (226)
T 3c65_A 169 TMFHSVLDDIPGVGEKRKKALLNYFGSV--KKMKEATVEELQRA 210 (226)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHhCCH--HHHHhCCHHHHHHc
Confidence 3456789999999999999999998731 12333344444443
No 60
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=66.31 E-value=2.7 Score=35.00 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.2
Q ss_pred eeeeehhcccccCHHHHHHHHHHhCCCC
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
.....|.+++|||+++|..|+..+|+..
T Consensus 90 ~~~~~l~~v~GvGpk~A~~~~~~lg~~~ 117 (575)
T 3b0x_A 90 RGVLEVMEVPGVGPKTARLLYEGLGIDS 117 (575)
T ss_dssp HHHHHHHTSTTTCHHHHHHHHHTSCCCS
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhcCCCC
Confidence 3455689999999999999999887653
No 61
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=65.88 E-value=2.1 Score=30.98 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.5
Q ss_pred eeeehhcccccCHHHHHHHHHHhCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKI 39 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi 39 (121)
....|..|+|||..+|..|++.+|=
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 3456889999999999999999883
No 62
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=64.92 E-value=3.5 Score=29.90 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.8
Q ss_pred ehhcccccCHHHHHHHHHHhC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.|++++|||.++|..|...+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 589999999999999998774
No 63
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=64.70 E-value=3.5 Score=30.15 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.8
Q ss_pred ehhcccccCHHHHHHHHHHh
Q psy8858 18 GLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~l 37 (121)
.|++++|||+++|..|+..+
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998655
No 64
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=64.69 E-value=3 Score=32.93 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=28.5
Q ss_pred eehhcccccCHHHHHHHHHHhCCCCC----cccCCCCHHHHHHHH
Q psy8858 17 IGLTAIYGIGRSRAKKICEVTKISTT----KKIKDLNDNELEKLR 57 (121)
Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lGi~p~----~~~~~Ls~~qi~~L~ 57 (121)
..|.+|+|||+++|..+-+. |+..- +.-+.|++.|..-|.
T Consensus 102 ~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 46789999999999999887 98742 234566665554443
No 65
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=63.42 E-value=5.9 Score=29.20 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeeeehhcccccCHHHHHHHHHHh
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~l 37 (121)
.+.-.|.+++|||+.+|..|+...
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 355678899999999999999874
No 66
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.76 E-value=3.5 Score=32.92 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.3
Q ss_pred eeehhcccccCHHHHHHHHHHhCCCC
Q psy8858 16 IIGLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
...|.+|+|||+++|..+.+. ||..
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~t 144 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRT 144 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCc
Confidence 346789999999999999887 9874
No 67
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=62.26 E-value=5.8 Score=29.37 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=24.8
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCCc-ccCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTTK-KIKD 47 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~-~~~~ 47 (121)
+.-.|.+++|||+.+|..||...-=.|+. .++|
T Consensus 148 ~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D 181 (232)
T 4b21_A 148 LMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD 181 (232)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc
Confidence 55678999999999999999876444543 3434
No 68
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=62.03 E-value=7.1 Score=31.33 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=29.6
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELE 54 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~ 54 (121)
-+..++|||..++..++..+||..--.+-.++.+++.
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~ 290 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQ 290 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHH
Confidence 4678999999999999999999865555566766664
No 69
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=61.93 E-value=5.3 Score=29.35 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.0
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTT 42 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~ 42 (121)
+.-.|.+++|||+.+|..||...-=.|+
T Consensus 144 ~~~~L~~l~GIG~~TA~~ill~~lg~~d 171 (225)
T 2yg9_A 144 VIAELVQLPGIGRWTAEMFLLFALARPD 171 (225)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTSCCSC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCCC
Confidence 4567899999999999999987533444
No 70
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=60.64 E-value=4.3 Score=30.98 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=23.8
Q ss_pred eeeehhcccccCHHHHHHHHHH-hCCCCCc-ccCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEV-TKISTTK-KIKD 47 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~-lGi~p~~-~~~~ 47 (121)
+.-.|.+++|||+.+|..||.. +| |+. .+.|
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg--~d~fpvdD 240 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG--KNVFPADD 240 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC--CCCCCTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC--CCcccchH
Confidence 4567899999999999999987 45 544 4444
No 71
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=59.57 E-value=7.7 Score=28.56 Aligned_cols=28 Identities=29% Similarity=0.295 Sum_probs=22.0
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTT 42 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~ 42 (121)
+.-.|.+++|||+.+|..|+...-=.|+
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~pd 164 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNRDD 164 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSS
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCC
Confidence 3567899999999999999976443444
No 72
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=57.55 E-value=6 Score=21.42 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=31.7
Q ss_pred hhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
|..-.|++.....+.+..+|+ .......+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 455568999999999999999 55556678888887776654
No 73
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=56.90 E-value=5.4 Score=31.16 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=19.9
Q ss_pred eeeehhcccccCHHHHHHHHHHh
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~l 37 (121)
..-.|.+++|||+.+|..|+..+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 45678999999999999999875
No 74
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=55.93 E-value=17 Score=28.49 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 25 IGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 25 IG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
+-..++..+++.+|++++.+..++++++.+.|...++++.
T Consensus 331 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (447)
T 2i0z_A 331 VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFT 370 (447)
T ss_dssp SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHEE
T ss_pred ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhCCE
Confidence 4566888899999999999999999999999998886654
No 75
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=55.28 E-value=5.7 Score=33.10 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=20.8
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCC
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKIS 40 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~ 40 (121)
....|.+++|||+++|..|.+. |+.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 4456799999999999999986 654
No 76
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=55.17 E-value=7.4 Score=29.66 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=28.0
Q ss_pred eeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 15 IIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 15 v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
..-.|.+++|||+.+|..||...-=.|+.-+- |--+.++...+
T Consensus 209 ~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv---D~~v~r~~~rl 251 (290)
T 3i0w_A 209 CHEELKKFMGVGPQVADCIMLFSMQKYSAFPV---DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC---CHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCccee---cHHHHHHHHHh
Confidence 45678999999999999999774223433332 34555444443
No 77
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=54.63 E-value=8.6 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.5
Q ss_pred eeeeehhcccccCHHHHHHHHHHh
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~l 37 (121)
...-.|.+++|||+.+|..||...
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 355678999999999999999874
No 78
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=52.25 E-value=7.5 Score=32.49 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred eeehhcccccCHHHHHHHHHHhC
Q psy8858 16 IIGLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lG 38 (121)
..-|++|.|||+-+|..+++++|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT
T ss_pred eeeeeccCCCCHHHHHHHHHHhc
Confidence 35679999999999999999998
No 79
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=51.81 E-value=23 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh
Q psy8858 29 RAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 29 ~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
.+..++..+||+ +.++.+||.+|+..|.+.+..
T Consensus 247 ~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 247 KIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 346778899998 789999999999999998843
No 80
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=51.81 E-value=7.9 Score=28.63 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.9
Q ss_pred ehhcccccCHHHHHHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEV 36 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~ 36 (121)
.|..++|||+.+|..|.+.
T Consensus 133 eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHH
Confidence 4788999999999999965
No 81
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=50.59 E-value=9.5 Score=24.16 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=16.3
Q ss_pred hhcccccCHHHHHHHHHHh
Q psy8858 19 LTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~l 37 (121)
+..+.|||.+++..|-+.+
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 5789999999999988765
No 82
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=48.97 E-value=9 Score=29.93 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=16.3
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.|+|||+++|..+++..|
T Consensus 236 gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 479999999999999887
No 83
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=48.91 E-value=8.5 Score=29.57 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.7
Q ss_pred eeehhc-ccccCHHHHHHHHHHh
Q psy8858 16 IIGLTA-IYGIGRSRAKKICEVT 37 (121)
Q Consensus 16 ~~aLt~-I~GIG~~~A~~Ic~~l 37 (121)
.-.|.+ ++|||+.+|..|+..+
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh
Confidence 345665 9999999999999764
No 84
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=48.66 E-value=9 Score=29.46 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.6
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.++|||+++|..+++..|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 589999999999999987
No 85
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=48.62 E-value=13 Score=27.08 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=19.9
Q ss_pred hhcccccCHHHHHHHHHHhCCCCCcccCCCCHH
Q psy8858 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDN 51 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~ 51 (121)
++.++|||+.++..+ ..+||..--.+-.++.+
T Consensus 186 v~~l~giG~~~~~~L-~~~Gi~TigdL~~~~~~ 217 (221)
T 1im4_A 186 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYN 217 (221)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCBTTC-------
T ss_pred cccccCCCHHHHHHH-HHcCCCcHHHHHCCCHH
Confidence 688999999888875 88999853333333333
No 86
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=47.96 E-value=18 Score=27.77 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.6
Q ss_pred hhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHH
Q psy8858 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELE 54 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~ 54 (121)
++.++|||+.++..+ ..+||..--.+..++.+++.
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~ 214 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLK 214 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHH
Confidence 689999999988875 78999865556666665554
No 87
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=45.95 E-value=15 Score=22.84 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHH-hhc
Q psy8858 47 DLNDNELEKLREEI-SKF 63 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l-~~~ 63 (121)
.||++|+..|..+| +.|
T Consensus 81 ~Lsd~ei~~l~~Yi~~~~ 98 (99)
T 3dp5_A 81 MIPPADALKIGEYVVASF 98 (99)
T ss_dssp TSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 59999999999998 444
No 88
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=45.44 E-value=11 Score=27.00 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHhCCCCCcccCCCCHHHHHHHHHHHhhc
Q psy8858 34 CEVTKISTTKKIKDLNDNELEKLREEISKF 63 (121)
Q Consensus 34 c~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~ 63 (121)
++.+|+++..++.+|+.+|+..|.+++..|
T Consensus 212 ~~~~~~~~~~r~~~l~~~~f~~l~~~~~~~ 241 (245)
T 1yub_A 212 HQAMKHAKVNNLSTITYEQVLSIFNSYLLF 241 (245)
T ss_dssp HHHHHHTTCSCTTSCCSHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCChhhCCHHHHHHHHHHHHHh
Confidence 478899999999999999999998887433
No 89
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=44.88 E-value=21 Score=20.26 Aligned_cols=20 Identities=10% Similarity=-0.070 Sum_probs=16.3
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q psy8858 43 KKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 43 ~~~~~Ls~~qi~~L~~~l~~ 62 (121)
+....||++|+..|..+|..
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44478999999999999854
No 90
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=43.62 E-value=9.9 Score=29.64 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLN 49 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls 49 (121)
.|++++|||..+|..|.+.+.=..-..+.+|.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHIS 89 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCC
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHh
Confidence 48999999999999999987755555666664
No 91
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=43.26 E-value=15 Score=21.36 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 47999999999999854
No 92
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=42.87 E-value=17 Score=28.07 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=27.3
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEK 55 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~ 55 (121)
-+..++|||+.++..+ ..+||..-..+..++.+++.+
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~ 215 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTT 215 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHH
Confidence 3578999999998876 689998655555556666553
No 93
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=42.78 E-value=18 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.0
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q psy8858 43 KKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 43 ~~~~~Ls~~qi~~L~~~l~~ 62 (121)
+....||++|+..|..+|..
T Consensus 59 Mp~~~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 59 MPPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp BCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33348999999999999854
No 94
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=42.77 E-value=17 Score=21.09 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999854
No 95
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=41.82 E-value=19 Score=20.89 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.9
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q psy8858 43 KKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 43 ~~~~~Ls~~qi~~L~~~l~~ 62 (121)
+..-.||++|+..|..+|..
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33338999999999999854
No 96
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=41.56 E-value=17 Score=27.93 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=25.5
Q ss_pred hhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHH
Q psy8858 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELE 54 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~ 54 (121)
++.++|||+.++..+ ..+||..-..+-.++.+++.
T Consensus 181 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~ 215 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHH
T ss_pred cccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHH
Confidence 688999999988875 78999865555555555443
No 97
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=41.24 E-value=13 Score=28.57 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=16.6
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.++|||+++|..+++..|
T Consensus 239 Gv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 589999999999999887
No 98
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=40.97 E-value=20 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|.+
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999843
No 99
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=40.83 E-value=21 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred eehhcccccCHHHHHHHHHHhCCCC
Q psy8858 17 IGLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
-.++.+.|||+..+..+-+ .||+.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 3578999999999999887 78874
No 100
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=40.81 E-value=14 Score=29.45 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=26.4
Q ss_pred hhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHH
Q psy8858 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEK 55 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~ 55 (121)
+++++|||..++..+ ..+||..--.+-.++.+++.+
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~~ 271 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILEK 271 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHHH
Confidence 788999999999887 679997544444556665543
No 101
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=39.62 E-value=15 Score=28.97 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=16.9
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.|+|||+.+|..+++..|
T Consensus 255 GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 688999999999999987
No 102
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=39.46 E-value=22 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred ehhcccccCHHHHHHHHHHhCCCC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
-|+++++||+.++..+ .++||+.
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCS
T ss_pred HhhcCCCCCHHHHHHH-HHcCCCC
Confidence 4789999999988766 7899884
No 103
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=39.44 E-value=25 Score=31.83 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=37.0
Q ss_pred eeeeehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccc
Q psy8858 14 HIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLIDLSCYRGI 89 (121)
Q Consensus 14 ~v~~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~~I~rl~~i~~yRG~ 89 (121)
.|.++|..|+|+|...|..|.+.=.=.| ..+ - .++...-. +. +..|+.|++.+++.++
T Consensus 964 ~Ir~gL~aIkGlG~~~a~~Iv~aR~~gp---F~s--~------~Df~~R~~----v~---k~~lE~Li~aGAfd~l 1021 (1041)
T 3f2b_A 964 SLIPPFNAIPGLGTNVAQAIVRAREEGE---FLS--K------EDLQQRGK----LS---KTLLEYLESRGCLDSL 1021 (1041)
T ss_dssp EEECCGGGSTTCCHHHHHHHHHHHHTSC---CCS--H------HHHHHHHT----CC---HHHHHHHHHTTTTTTS
T ss_pred EEEEchHhhCCCCHHHHHHHHHHHhCCC---CCC--H------HHHHHHHC----cC---HHHHHHHHHCCCCcCC
Confidence 6999999999999999999997543112 222 1 12221111 22 3456778888888754
No 104
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=39.23 E-value=15 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999854
No 105
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=38.95 E-value=55 Score=29.01 Aligned_cols=46 Identities=33% Similarity=0.437 Sum_probs=32.0
Q ss_pred eeeeeehhcccccCHHHHHHHHHHhCCCC--------Cccc--CCCCHHHHHHHHH
Q psy8858 13 QHIIIGLTAIYGIGRSRAKKICEVTKIST--------TKKI--KDLNDNELEKLRE 58 (121)
Q Consensus 13 k~v~~aLt~I~GIG~~~A~~Ic~~lGi~p--------~~~~--~~Ls~~qi~~L~~ 58 (121)
..|.++|..|+|||...|..|.+.=.=.| -.++ ..++...++.|..
T Consensus 829 ~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~ 884 (910)
T 2hnh_A 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 (910)
T ss_dssp SCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHH
T ss_pred CeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHH
Confidence 46999999999999999999987653112 1233 2456666666655
No 106
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=37.94 E-value=40 Score=25.16 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCCcccCCCCHHHHHHHHHHHhh
Q psy8858 30 AKKICEVTKISTTKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 30 A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
...+++.+|+++ .++.+|+.+|+-.|.+.+..
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 356678899987 79999999999999998854
No 107
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=37.27 E-value=25 Score=20.27 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8858 47 DLNDNELEKLREEISK 62 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l~~ 62 (121)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999854
No 108
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=37.18 E-value=7.5 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=16.6
Q ss_pred eehhcccccCHHHHHHHHHHhCCCCC
Q psy8858 17 IGLTAIYGIGRSRAKKICEVTKISTT 42 (121)
Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lGi~p~ 42 (121)
|-|.+|.|||..+|-.|...+|++++
T Consensus 44 y~l~~i~gigf~~aD~ia~~~g~~~~ 69 (574)
T 3e1s_A 44 FTLTEVEGIGFLTADKLWQARGGALD 69 (574)
T ss_dssp CGGGTSSSCCHHHHHTTC-------C
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCCC
Confidence 45588999999999999999999864
No 109
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=37.00 E-value=15 Score=23.73 Aligned_cols=20 Identities=10% Similarity=0.521 Sum_probs=16.1
Q ss_pred cCCCCHHHHHHHHHHHhhcc
Q psy8858 45 IKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 45 ~~~Ls~~qi~~L~~~l~~~~ 64 (121)
+.+||++|+..|.+++..|.
T Consensus 1 Ms~lt~eqi~el~~~F~~~D 20 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFD 20 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999886654
No 110
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=37.00 E-value=12 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=23.2
Q ss_pred eehhcccccCHHHHHHHHHHhCCCCCccc
Q psy8858 17 IGLTAIYGIGRSRAKKICEVTKISTTKKI 45 (121)
Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lGi~p~~~~ 45 (121)
+-+++++|||..++..+...+||.+-..+
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~~~ti 335 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPHENSI 335 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCSSSHH
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCcccch
Confidence 45689999999999999998899544333
No 111
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=36.43 E-value=21 Score=20.73 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHh
Q psy8858 46 KDLNDNELEKLREEIS 61 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~ 61 (121)
..||++|+..|..+|.
T Consensus 62 ~~Ls~~ei~~l~~Yl~ 77 (79)
T 1c53_A 62 KRYSDEEMKAMADYMS 77 (79)
T ss_pred hhCCHHHHHHHHHHHH
Confidence 4799999999999884
No 112
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=36.32 E-value=48 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHhCCCCC---cccCCCCHHHHHHHHHHHhhc
Q psy8858 31 KKICEVTKISTT---KKIKDLNDNELEKLREEISKF 63 (121)
Q Consensus 31 ~~Ic~~lGi~p~---~~~~~Ls~~qi~~L~~~l~~~ 63 (121)
.......+++++ -.+.+|+++|++.|.++...|
T Consensus 55 T~~f~~~~~~~~~l~~dl~~L~~~e~~~l~~W~~~f 90 (102)
T 1j03_A 55 SRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKF 90 (102)
T ss_dssp HHHHHHTCCCSSSCCSSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhccCcccCCCHHHHHHHHHHHHHH
Confidence 455567777765 346789999999999988544
No 113
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=35.58 E-value=18 Score=28.06 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=16.8
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.++|||+.+|..+++..|
T Consensus 238 Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp CSTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 689999999999999987
No 114
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=35.49 E-value=28 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhhc
Q psy8858 46 KDLNDNELEKLREEISKF 63 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~~ 63 (121)
..||++|+..|..+|..+
T Consensus 65 ~~ls~~ei~~l~~yl~~l 82 (87)
T 1cno_A 65 TALSDADIANLAAYYASN 82 (87)
T ss_dssp TTCCHHHHHHHHHHHHHS
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 579999999999999543
No 115
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=35.40 E-value=27 Score=20.21 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999999943
No 116
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=35.34 E-value=27 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 85 ~~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSS 101 (103)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999854
No 117
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=34.78 E-value=35 Score=20.75 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=21.0
Q ss_pred CCCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 38 KISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 38 Gi~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
-+||+..-+..|+||-+.|.++++.|-
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G 42 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHG 42 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHS
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 368999999999999999999886553
No 118
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=34.64 E-value=25 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|.+
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999954
No 119
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=34.58 E-value=24 Score=20.59 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHh
Q psy8858 46 KDLNDNELEKLREEIS 61 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~ 61 (121)
..||++|+..|..+|.
T Consensus 60 ~~Lsd~ei~~l~~yi~ 75 (78)
T 1gks_A 60 GRADREDLVKAIEYML 75 (78)
T ss_dssp TTBCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4799999999999984
No 120
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=34.37 E-value=19 Score=28.36 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.9
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.|+|||+.+|..+++..|
T Consensus 236 ~IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 236 SIRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp CCTTCCHHHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 368999999999999876
No 121
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=34.31 E-value=15 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=28.7
Q ss_pred cccccCHHHHHHHHHHhCCCCCcccCCCCHHHHH
Q psy8858 21 AIYGIGRSRAKKICEVTKISTTKKIKDLNDNELE 54 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~ 54 (121)
+|.|+|+.++.++.+..++..-..+-+|+.+++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 6999999999999999998877777777766654
No 122
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=34.20 E-value=28 Score=20.79 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHh
Q psy8858 47 DLNDNELEKLREEIS 61 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l~ 61 (121)
.||++|+..|..+|.
T Consensus 67 ~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 67 DCSDDELKAAIGKMS 81 (83)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999999883
No 123
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=32.90 E-value=16 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=31.4
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
.|+.++|||.+++.+|..-+.+.. ..-.-+.-+|.+.+.+.+
T Consensus 132 ~L~~~~GiG~Ktaq~I~~~l~~~~-~~~~r~~~~e~~~~~~~i 173 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATILENVVFLF-EARQRQSLRAGLAVAEEL 173 (578)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHH-HHCSSEEHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHH-hhcCCeeHHHHHHHHHHH
Confidence 578899999999999966655442 233556677888888877
No 124
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=32.87 E-value=31 Score=20.07 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8858 47 DLNDNELEKLREEISK 62 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l~~ 62 (121)
.||++|+..|..+|..
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLA 81 (88)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999943
No 125
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=32.62 E-value=41 Score=19.59 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhhc
Q psy8858 46 KDLNDNELEKLREEISKF 63 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~~ 63 (121)
..||++|+..|..+|..+
T Consensus 56 ~~ls~~ei~~l~~yl~~~ 73 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSL 73 (80)
T ss_dssp TTSCHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHC
Confidence 479999999999998543
No 126
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=31.92 E-value=1.2e+02 Score=21.44 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhCCCCCc--------ccCCCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q psy8858 26 GRSRAKKICEVTKISTTK--------KIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLIDL 83 (121)
Q Consensus 26 G~~~A~~Ic~~lGi~p~~--------~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~~I~rl~~i 83 (121)
=+..|..|.+.+|+.+.. .++++|.+|+..|.+....-....+|...+++=+-.-..|
T Consensus 74 tPpas~Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSm 139 (165)
T 2zkr_i 74 VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSV 139 (165)
T ss_dssp CCCHHHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHhC
Confidence 356788888999988643 6789999999999887733233445555444443333333
No 127
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=31.90 E-value=29 Score=20.70 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..|+++|+..|..+|..
T Consensus 81 ~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 46999999999999854
No 128
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=31.73 E-value=33 Score=19.98 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 35999999999999943
No 129
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=31.55 E-value=33 Score=20.02 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 36999999999999943
No 130
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=31.46 E-value=27 Score=30.02 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=30.7
Q ss_pred hcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHH
Q psy8858 20 TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 20 t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L 56 (121)
-+|.|+|+.++.++.+..+|..-.-+-.|+.+++..|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l 485 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcc
Confidence 4899999999999999999887777888887765543
No 131
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=31.33 E-value=34 Score=19.65 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8858 47 DLNDNELEKLREEISK 62 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l~~ 62 (121)
.||++|+..|..+|..
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999943
No 132
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=30.93 E-value=25 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=17.9
Q ss_pred ehhcccccCHHHHHHHHHHhC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.|..+.|||+.+|..|...+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 367899999999999988764
No 133
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=30.80 E-value=25 Score=27.26 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.9
Q ss_pred ehhcccccCHHHHHHHHHHhC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.|++++|||..+|..|.+.+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998865
No 134
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=30.71 E-value=25 Score=26.85 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.5
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.++|||+.+|..+++. |
T Consensus 229 GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp TTTTCCHHHHHHHHHH-T
T ss_pred CCCCcCHHHHHHHHHc-C
Confidence 6899999999999988 5
No 135
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=29.90 E-value=92 Score=18.58 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCC------CcccCCCCHHHHHHHHHHHhhcccchhhHHHHHH
Q psy8858 29 RAKKICEVTKIST------TKKIKDLNDNELEKLREEISKFIIEGDLRREFSM 75 (121)
Q Consensus 29 ~A~~Ic~~lGi~p------~~~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~ 75 (121)
.+..|.+.+|+.+ ...++++|.+|+..|.+.-..-....||...+++
T Consensus 5 as~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~ 57 (67)
T 1qa6_A 5 AAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRM 57 (67)
T ss_dssp HHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHhhcccCHHHHHHH
Confidence 4667778888864 3478999999999998876332334556554443
No 136
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=29.64 E-value=21 Score=27.52 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=16.6
Q ss_pred cccccCHHHHHHHHHHhC
Q psy8858 21 AIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lG 38 (121)
.|+|||+.+|..+++..|
T Consensus 241 gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CSTTCCHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 689999999999999876
No 137
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.52 E-value=1e+02 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=16.6
Q ss_pred CcccCCCCHHHHHHHHHHH
Q psy8858 42 TKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 42 ~~~~~~Ls~~qi~~L~~~l 60 (121)
...+..||++|-+.|.+.|
T Consensus 11 ~~dLs~LteeEr~~Il~VL 29 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVV 29 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHH
Confidence 3457889999999999999
No 138
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=29.21 E-value=29 Score=27.22 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred ehhcccccCHHHHHHHHHHhC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.|++++|||..+|..|.+.+.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH
Confidence 489999999999999998876
No 139
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=29.19 E-value=36 Score=20.03 Aligned_cols=16 Identities=13% Similarity=0.439 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHh
Q psy8858 46 KDLNDNELEKLREEIS 61 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~ 61 (121)
..||++|+..|..+|.
T Consensus 68 ~~ls~~ei~~l~~yl~ 83 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVY 83 (91)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH
Confidence 4799999999999994
No 140
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=29.03 E-value=38 Score=19.80 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8858 47 DLNDNELEKLREEISK 62 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l~~ 62 (121)
.||++|+..|..+|..
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999853
No 141
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=29.03 E-value=26 Score=27.43 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=17.1
Q ss_pred hcccccCHHHHHHHHHHhC
Q psy8858 20 TAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 20 t~I~GIG~~~A~~Ic~~lG 38 (121)
..|+|||+++|..+++..|
T Consensus 228 pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCC
T ss_pred CCCCCeeHHHHHHHHHHhC
Confidence 4689999999999999985
No 142
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=28.83 E-value=37 Score=19.88 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 36999999999999943
No 143
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=28.81 E-value=40 Score=20.28 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=17.9
Q ss_pred ccCHHHHHHHHHHhCCCCC--cccCCCCHHHHHHHHHHH
Q psy8858 24 GIGRSRAKKICEVTKISTT--KKIKDLNDNELEKLREEI 60 (121)
Q Consensus 24 GIG~~~A~~Ic~~lGi~p~--~~~~~Ls~~qi~~L~~~l 60 (121)
|=|.....+-|..+---.. ..+..++.++|......+
T Consensus 19 ~~G~~l~~~~C~~CH~~~~i~~~p~~~~~~~W~~~v~~M 57 (81)
T 2blf_B 19 QPGFEAAQNNCAACHSVDYINTQPPGKGQAFWDAEVQKM 57 (81)
T ss_dssp STHHHHHHHHTTSSSCTHHHHTSCTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCcccccCcCcCCHHHHHHHHHHH
Confidence 5567777766655431100 012345555555554444
No 144
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=28.69 E-value=1.4e+02 Score=20.40 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCC------CcccCCCCHHHHHHHHHHHhhcccchhhHHHHHHH
Q psy8858 27 RSRAKKICEVTKIST------TKKIKDLNDNELEKLREEISKFIIEGDLRREFSMN 76 (121)
Q Consensus 27 ~~~A~~Ic~~lGi~p------~~~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~~ 76 (121)
+..|..|.+.+|+.+ ...++++|.+|+..|.+....-....||...+++=
T Consensus 72 Ppas~Ll~ka~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I 127 (140)
T 1mms_A 72 PPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKII 127 (140)
T ss_dssp CCHHHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 567888889999885 23789999999999998874323345565544443
No 145
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=28.56 E-value=36 Score=19.82 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHh
Q psy8858 47 DLNDNELEKLREEIS 61 (121)
Q Consensus 47 ~Ls~~qi~~L~~~l~ 61 (121)
.||++|+..|..+|.
T Consensus 67 ~ls~~ei~~l~~yi~ 81 (85)
T 3cu4_A 67 MIPPADALKIGEYVV 81 (85)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999999984
No 146
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=28.56 E-value=31 Score=26.26 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=23.9
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEK 55 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~ 55 (121)
.|..++|||+..+.. |...|+..-..+.+++++++..
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ 194 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDE 194 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHh
Confidence 478999999999887 4567775444444444444443
No 147
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.84 E-value=69 Score=18.41 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.2
Q ss_pred CCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 39 ISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 39 i~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
++|+..-+..|++|-+.|.++++.|.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g 28 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMP 28 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 68999999999999999998886554
No 148
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=27.68 E-value=1e+02 Score=19.03 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=16.8
Q ss_pred CcccCCCCHHHHHHHHHHHhh
Q psy8858 42 TKKIKDLNDNELEKLREEISK 62 (121)
Q Consensus 42 ~~~~~~Ls~~qi~~L~~~l~~ 62 (121)
.+....||++|+..|..+|..
T Consensus 99 ~Mp~~~Ls~~ei~~l~~Yl~~ 119 (124)
T 3cp5_A 99 MMTDMALSEEQARAILEYLRQ 119 (124)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 344568999999999999943
No 149
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.56 E-value=97 Score=19.51 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=15.7
Q ss_pred ccCHHHHHHHHHHhCCCCCc
Q psy8858 24 GIGRSRAKKICEVTKISTTK 43 (121)
Q Consensus 24 GIG~~~A~~Ic~~lGi~p~~ 43 (121)
.+...+...||..+|++++.
T Consensus 51 ~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 51 HPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp CCCHHHHHHHHHHHTCCSHH
T ss_pred CCCHHHHHHHHHHHCcCHHH
Confidence 45677888999999998754
No 150
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=27.13 E-value=1.1e+02 Score=18.66 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCC------CcccCCCCHHHHHHHHHHHhhcccchhhHHHHHHH
Q psy8858 28 SRAKKICEVTKIST------TKKIKDLNDNELEKLREEISKFIIEGDLRREFSMN 76 (121)
Q Consensus 28 ~~A~~Ic~~lGi~p------~~~~~~Ls~~qi~~L~~~l~~~~i~~~L~~~~~~~ 76 (121)
..|..|.+.+|+.+ ...++++|.+|+..|.+.-..-....||...+++=
T Consensus 9 pas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I 63 (76)
T 1hc8_A 9 PAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMI 63 (76)
T ss_dssp CHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 35677888888874 23688999999999988763323345565544443
No 151
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=26.17 E-value=41 Score=20.26 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999943
No 152
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=26.00 E-value=35 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=20.2
Q ss_pred eeeeh-hcccccCHHHHHHH-HHHhCCC
Q psy8858 15 IIIGL-TAIYGIGRSRAKKI-CEVTKIS 40 (121)
Q Consensus 15 v~~aL-t~I~GIG~~~A~~I-c~~lGi~ 40 (121)
+.-+| +.+.|+|+..|.++ |.++|.+
T Consensus 190 l~~~l~~~~~G~s~~la~El~~~ra~~~ 217 (288)
T 3doa_A 190 IAKQLLNQFEGFSPLITNEIVSRRQFMT 217 (288)
T ss_dssp HHHHHHHHBTTCCHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHcCCc
Confidence 34455 55669999999999 9999853
No 153
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=25.78 E-value=58 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCcccCCCCHHHHHHHHH
Q psy8858 27 RSRAKKICEVTKISTTKKIKDLNDNELEKLRE 58 (121)
Q Consensus 27 ~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~ 58 (121)
...-..+|+..|||.+++..+|++++.+.|-.
T Consensus 336 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~l~ 367 (972)
T 2r6f_A 336 PQLLEAVCRHYGIPMDVPVKDLPKEQLDKILY 367 (972)
T ss_dssp HHHHHHHHHHHCCCSSCBGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCchHHCCHHHHHHHcc
Confidence 35667889999999999999999999886643
No 154
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=25.67 E-value=37 Score=26.91 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=19.0
Q ss_pred ehhcccccCHHHHHHHHHHhC
Q psy8858 18 GLTAIYGIGRSRAKKICEVTK 38 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lG 38 (121)
.|++++|||..+|..|.+.+.
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998866
No 155
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=25.10 E-value=43 Score=21.51 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=19.1
Q ss_pred hhcccccCHHHHHHHHHHhCCCC
Q psy8858 19 LTAIYGIGRSRAKKICEVTKIST 41 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p 41 (121)
|.+--|+...+...+|+++|++.
T Consensus 45 lA~~~~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 45 ISALANSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHTTCCHHHHHHHHHHTTCSS
T ss_pred HHHHHCCCHHHHHHHHHHcCCCC
Confidence 45567899999999999999874
No 156
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=24.89 E-value=14 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=30.5
Q ss_pred eCccCCCCeeeeeeh-hcccccCHHHHHHHHHHhCCCCCcccCCC
Q psy8858 5 VGINIPNNQHIIIGL-TAIYGIGRSRAKKICEVTKISTTKKIKDL 48 (121)
Q Consensus 5 ~~~~~~~~k~v~~aL-t~I~GIG~~~A~~Ic~~lGi~p~~~~~~L 48 (121)
+.+-.++.+.-.-.+ ...+|+.-..|..|.+.+|++....++.|
T Consensus 70 md~V~~E~KeaL~ellEE~PGaalqia~~Li~~lGls~~~~lkkl 114 (114)
T 3fgx_A 70 FSCIVPEQEEELRQAAEEFPGLTFNTASRLMEIVGASAATSLKKL 114 (114)
T ss_dssp HTTBCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHTCCCCCCCC--
T ss_pred HHhcCcccHHHHHHHHHHCccHHHHHHHHHHHHhCCcchhhhhcC
Confidence 344444444333333 58999999999999999999987776654
No 157
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=24.60 E-value=89 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=22.6
Q ss_pred hcccccCHHHHHHHHHHhCCCCCcccCCCCHHH
Q psy8858 20 TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNE 52 (121)
Q Consensus 20 t~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~q 52 (121)
..++-||+.||..+ +.+|+.+ .-+..-+-+.
T Consensus 115 ~~i~aVG~~Ta~aL-~~~G~~~-~~p~~~~ae~ 145 (286)
T 1jr2_A 115 KSVYVVGNATASLV-SKIGLDT-EGETCGNAEK 145 (286)
T ss_dssp SEEEECSHHHHHHH-HHTTCCC-SCCSCSSHHH
T ss_pred CcEEEECHHHHHHH-HHcCCCc-CCCCccCHHH
Confidence 47999999999988 7899987 3344444333
No 158
>1wn8_A Kalata B3/B6, oantr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=24.44 E-value=22 Score=17.48 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=3.1
Q ss_pred CCCCcCC
Q psy8858 93 KSLPCRG 99 (121)
Q Consensus 93 ~gLpVRG 99 (121)
.||||-|
T Consensus 19 kglpvcg 25 (26)
T 1wn8_A 19 KGLPXXX 25 (26)
T ss_dssp TTCC---
T ss_pred cCCCCCC
Confidence 5888876
No 159
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=24.07 E-value=41 Score=20.29 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=17.5
Q ss_pred hCCCCCcccCCCCHHHHHHH
Q psy8858 37 TKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 37 lGi~p~~~~~~Ls~~qi~~L 56 (121)
.|+||...=..||++|.+.+
T Consensus 22 ~gVD~~~lE~yLsdedF~~v 41 (67)
T 2k6m_S 22 EGVDPLKLEIYLTDEDFEFA 41 (67)
T ss_dssp SSSBTTBCGGGSCHHHHHHH
T ss_pred CCCCchHHHhhCCHHHHHHH
Confidence 48999999999999998854
No 160
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=23.53 E-value=1e+02 Score=17.21 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCCCCcccCCCCHHHHHHHHHHHhhcc
Q psy8858 38 KISTTKKIKDLNDNELEKLREEISKFI 64 (121)
Q Consensus 38 Gi~p~~~~~~Ls~~qi~~L~~~l~~~~ 64 (121)
|-+|+..-+..|++|-+.|.+++..|.
T Consensus 1 gs~p~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 1 GSSGSSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCSCCCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 346778888999999999999997665
No 161
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=23.37 E-value=1.9e+02 Score=20.07 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.8
Q ss_pred cccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 21 AIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 21 ~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
.-|++-...|..|+ ++++..|+--|.++|.+..
T Consensus 105 ~~f~LSe~QA~AIL-------dmRL~rLT~LE~~ki~~E~ 137 (156)
T 3ku8_A 105 GLYYLTEQQAQAIL-------DLRLQKLTGLEHEKLLDEY 137 (156)
T ss_dssp TEEECCHHHHHHHH-------TCBGGGGSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHH-------HhHHHHhhhHHHHHHHHHH
Confidence 35888899999998 8899999988888887766
No 162
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=23.27 E-value=36 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.9
Q ss_pred ehhcccccCHHHHHHHHHH-hCCCC
Q psy8858 18 GLTAIYGIGRSRAKKICEV-TKIST 41 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~-lGi~p 41 (121)
-++.++|||+.++..+-.. +||..
T Consensus 242 pv~~l~GiG~~~~~~L~~~~~GI~t 266 (434)
T 2aq4_A 242 KLDDLPGVGHSTLSRLESTFDSPHS 266 (434)
T ss_dssp CGGGSTTCCHHHHHHHHHHTTCCCS
T ss_pred CcccccCcCHHHHHHHHHhcCCceE
Confidence 4689999999999988876 59864
No 163
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=23.24 E-value=44 Score=27.58 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=29.3
Q ss_pred hhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHHHHHHH
Q psy8858 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~~~l 60 (121)
|++++|||.++|..|+..+....+ ...-+.-+|.+.+.+.+
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~-~~~r~~~~e~~~~~~~i 170 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQA-AGKRRPLGAVLSLARSL 170 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHH-HTCCEEHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHH-hccceeHHHHHHHHHHH
Confidence 689999999999999765543322 22445667888777776
No 164
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=23.01 E-value=53 Score=19.83 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=17.7
Q ss_pred hCCCCCcccCCCCHHHHHHH
Q psy8858 37 TKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 37 lGi~p~~~~~~Ls~~qi~~L 56 (121)
.|+||.+.=.-||+++.+.+
T Consensus 22 ~gVD~~~lE~yLsdedF~~v 41 (67)
T 1yu8_X 22 RGVDPSAKENHLSDEDFKAV 41 (67)
T ss_dssp TTCCTTCGGGGSCHHHHHHH
T ss_pred cccChHHHHhcCCHHHHHHH
Confidence 58999999999999999865
No 165
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=22.55 E-value=53 Score=19.84 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
-.||++|+..|..+|..
T Consensus 79 ~~Ls~~ei~~l~~yl~~ 95 (110)
T 2l4d_A 79 MRLGDAEVSALISYLEE 95 (110)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 36999999999999954
No 166
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=22.15 E-value=24 Score=21.27 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.2
Q ss_pred CCCcccCCCCHHHHHHHHHHH
Q psy8858 40 STTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 40 ~p~~~~~~Ls~~qi~~L~~~l 60 (121)
-|.++--+|+.+|+..|.+.+
T Consensus 36 ~PgkKGIsL~~~qw~~l~~~~ 56 (66)
T 1pcf_A 36 KPGRKGISLNPEQWSQLKEQI 56 (66)
T ss_dssp EEEEEEEEECHHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHH
Confidence 367778899999999999988
No 167
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.97 E-value=21 Score=28.00 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=32.6
Q ss_pred CCeeeeeehhcccccCHHHHHHHHH-HhCCCCCcccCCCCHHHHHHHHHHHhhc
Q psy8858 11 NNQHIIIGLTAIYGIGRSRAKKICE-VTKISTTKKIKDLNDNELEKLREEISKF 63 (121)
Q Consensus 11 ~~k~v~~aLt~I~GIG~~~A~~Ic~-~lGi~p~~~~~~Ls~~qi~~L~~~l~~~ 63 (121)
..|.+..+|..+.+-........+. .+|+ ++++.+||.+|+..|.+++.+.
T Consensus 282 RRKtL~n~L~~l~~~~~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~w 333 (353)
T 1i4w_A 282 KRTPLNTVMDSLGHGGQQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFMEW 333 (353)
T ss_dssp TTSCTTTGGGGSSTTHHHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHhhccccHHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHhC
Confidence 4577777777654211111111222 4566 5999999999999999998543
No 168
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.83 E-value=51 Score=21.14 Aligned_cols=22 Identities=0% Similarity=0.024 Sum_probs=17.0
Q ss_pred hhcccccCHHHHHHHHHHhCCC
Q psy8858 19 LTAIYGIGRSRAKKICEVTKIS 40 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~ 40 (121)
|..--|+.+.+...+|+++|++
T Consensus 41 lA~~~~vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 41 IANQLETSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HHHHHTSCHHHHHHHHHHHSTT
T ss_pred HHHHHCCCHHHHHHHHHHhCCC
Confidence 4455678888888888888877
No 169
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=21.72 E-value=34 Score=22.63 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=12.6
Q ss_pred ehhcccccCHHHHHHHHHHh
Q psy8858 18 GLTAIYGIGRSRAKKICEVT 37 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~l 37 (121)
.|..|.|||+.+|..|+..+
T Consensus 59 eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 59 ELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHH
Confidence 35566677776666666554
No 170
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=21.68 E-value=72 Score=26.21 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.3
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEK 55 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~ 55 (121)
-+..++|||+.++..+ ..+||..--.+-.++.+++.+
T Consensus 316 PV~~l~GIG~~t~~kL-~~lGI~TigDLa~~~~~~L~~ 352 (504)
T 3gqc_A 316 LVTNLPGVGHSMESKL-ASLGIKTCGDLQYMTMAKLQK 352 (504)
T ss_dssp BGGGSTTCCHHHHHHH-HHTTCCBHHHHTTSCHHHHHH
T ss_pred ChhHhhCcCHHHHHHH-HHcCCCcHHHHHhccHHHHHH
Confidence 4688999999999875 589998655666667776653
No 171
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=21.61 E-value=55 Score=26.15 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.9
Q ss_pred hhcccccCHHHHHHHHHHhCCC
Q psy8858 19 LTAIYGIGRSRAKKICEVTKIS 40 (121)
Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lGi~ 40 (121)
+++++|||..++..+ ..+||.
T Consensus 284 v~~l~GiG~~~~~~L-~~lGI~ 304 (459)
T 1t94_A 284 IRKVSGIGKVTEKML-KALGII 304 (459)
T ss_dssp GGGCTTSCHHHHHHH-HHTTCC
T ss_pred HHhcCCcCHHHHHHH-HHcCCC
Confidence 689999999888665 889987
No 172
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=21.40 E-value=39 Score=20.84 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCCCc
Q psy8858 28 SRAKKICEVTKISTTK 43 (121)
Q Consensus 28 ~~A~~Ic~~lGi~p~~ 43 (121)
..|..+|+.+|++++.
T Consensus 14 ~~a~~v~~~lGl~~s~ 29 (79)
T 4fxe_A 14 ARSYAALEKMGVTPSE 29 (79)
T ss_dssp HHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 4688999999998643
No 173
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=21.33 E-value=55 Score=25.37 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=26.9
Q ss_pred ehhcccccCHHHHHHHHHHhCCCCCcccCCCCHHHHH
Q psy8858 18 GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELE 54 (121)
Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lGi~p~~~~~~Ls~~qi~ 54 (121)
-+..++|||+.++..+ ..+||..-..+..++.+++.
T Consensus 180 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~ 215 (362)
T 4f4y_A 180 DIDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (362)
T ss_dssp BSTTSTTCCSTTHHHH-HHTTCCBGGGGTTSCHHHHH
T ss_pred ChhhccCCCHHHHHHH-HHcCCChHHHHhcCCHHHHH
Confidence 4578999999998875 57999875566666666554
No 174
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.31 E-value=83 Score=21.22 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=14.3
Q ss_pred CCcccCCCCHHHHHHHHHHH
Q psy8858 41 TTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 41 p~~~~~~Ls~~qi~~L~~~l 60 (121)
+...+..||++|.+.|.+.|
T Consensus 3 ~~~dls~LteeE~~~Il~Vl 22 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVI 22 (134)
T ss_dssp -----CCCCSSHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHH
Confidence 45567899999999999999
No 175
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=21.19 E-value=68 Score=28.12 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCcccCCCCHHHHHHHH
Q psy8858 28 SRAKKICEVTKISTTKKIKDLNDNELEKLR 57 (121)
Q Consensus 28 ~~A~~Ic~~lGi~p~~~~~~Ls~~qi~~L~ 57 (121)
..-..+++.+|+|.++++.+|++++.+.|-
T Consensus 191 ~~l~~~~~~~~~~~~~p~~~l~~~~~~~~l 220 (842)
T 2vf7_A 191 QNQRDILVTLGIDVDVPWRELPEETRHWIL 220 (842)
T ss_dssp HHHHHHHHHTTCCSSSBGGGSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCchhhCCHHHHHHHh
Confidence 445678999999999999999999977543
No 176
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.18 E-value=45 Score=20.12 Aligned_cols=20 Identities=5% Similarity=0.297 Sum_probs=16.9
Q ss_pred hCCCCCcccCCCCHHHHHHH
Q psy8858 37 TKISTTKKIKDLNDNELEKL 56 (121)
Q Consensus 37 lGi~p~~~~~~Ls~~qi~~L 56 (121)
.||||.+.=.-||++|...+
T Consensus 23 ~gVD~~~lE~yLsdedF~~v 42 (68)
T 1qzp_A 23 PGVDRMRLERHLSAEDFSRV 42 (68)
T ss_dssp SSCCGGGCGGGBCHHHHHHH
T ss_pred CCCCchHHHhhCCHHHHHHH
Confidence 47999999999999998754
No 177
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=21.01 E-value=96 Score=24.45 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=39.5
Q ss_pred CCCeeeeeehhcccccCHHHHHHHHHHhCCC-CCcccCCCCHHHHHHHHHHH
Q psy8858 10 PNNQHIIIGLTAIYGIGRSRAKKICEVTKIS-TTKKIKDLNDNELEKLREEI 60 (121)
Q Consensus 10 ~~~k~v~~aLt~I~GIG~~~A~~Ic~~lGi~-p~~~~~~Ls~~qi~~L~~~l 60 (121)
+++.-|.-+.+.+ +.+..+..++..+|+. |+.++-+.+.+|+..+...+
T Consensus 90 d~~~~VVK~s~~l--~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L 139 (342)
T 1cja_A 90 ESGVFIVKRSTNI--ESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECL 139 (342)
T ss_dssp SSCEEEEECCTTH--HHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHH
T ss_pred CCCEEEEeCcHHH--HHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHH
Confidence 4677777777777 8899999999999998 88888888877777666554
No 178
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=20.80 E-value=76 Score=21.02 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHhCCCCCcccCC
Q psy8858 26 GRSRAKKICEVTKISTTKKIKD 47 (121)
Q Consensus 26 G~~~A~~Ic~~lGi~p~~~~~~ 47 (121)
...+...||+.+|++++.-+++
T Consensus 60 s~~~l~~iA~~f~V~~~yl~~~ 81 (135)
T 3r1f_A 60 SGATMAALANFFRIKAAYFTDD 81 (135)
T ss_dssp CHHHHHHHHHHHTSCTHHHHCH
T ss_pred CHHHHHHHHHHhCCCHHHHcCC
Confidence 4567889999999998776654
No 179
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=20.11 E-value=69 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8858 46 KDLNDNELEKLREEISK 62 (121)
Q Consensus 46 ~~Ls~~qi~~L~~~l~~ 62 (121)
..||++|+..|..+|..
T Consensus 172 ~~Ls~~ei~~l~~Yl~s 188 (190)
T 1m70_A 172 AKLSNKDIEALSSYIQG 188 (190)
T ss_dssp TTCCHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 47999999999999854
Done!