Your job contains 1 sequence.
>psy8858
MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI
SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR
K
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8858
(121 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_0253 - symbol:SO_0253 "ribosomal protein S13"... 422 1.4e-39 1
TIGR_CMR|CPS_0623 - symbol:CPS_0623 "ribosomal protein S1... 402 1.9e-37 1
UNIPROTKB|A6UZL0 - symbol:rpsM "30S ribosomal protein S13... 399 3.9e-37 1
UNIPROTKB|P0A7S9 - symbol:rpsM species:83333 "Escherichia... 385 1.2e-35 1
UNIPROTKB|Q9KP05 - symbol:rpsM "30S ribosomal protein S13... 382 2.4e-35 1
TIGR_CMR|VC_2574 - symbol:VC_2574 "ribosomal protein S13"... 382 2.4e-35 1
TIGR_CMR|CHY_2284 - symbol:CHY_2284 "ribosomal protein S1... 359 6.7e-33 1
TIGR_CMR|CBU_0260 - symbol:CBU_0260 "ribosomal protein S1... 358 8.5e-33 1
TIGR_CMR|SPO_0509 - symbol:SPO_0509 "ribosomal protein S1... 351 4.7e-32 1
UNIPROTKB|O66486 - symbol:rpsM "30S ribosomal protein S13... 345 2.0e-31 1
UNIPROTKB|Q89JA6 - symbol:rpsM "30S ribosomal protein S13... 340 6.9e-31 1
UNIPROTKB|P20282 - symbol:rpsM "30S ribosomal protein S13... 338 1.1e-30 1
UNIPROTKB|Q749B0 - symbol:rpsM "30S ribosomal protein S13... 338 1.1e-30 1
TIGR_CMR|GSU_2834 - symbol:GSU_2834 "ribosomal protein S1... 338 1.1e-30 1
TIGR_CMR|ECH_0430 - symbol:ECH_0430 "ribosomal protein S1... 332 4.9e-30 1
UNIPROTKB|A9WH90 - symbol:rpsM "30S ribosomal protein S13... 331 6.2e-30 1
TIGR_CMR|BA_0135 - symbol:BA_0135 "ribosomal protein S13"... 331 6.2e-30 1
UNIPROTKB|Q9X1I5 - symbol:rpsM "30S ribosomal protein S13... 325 2.7e-29 1
UNIPROTKB|Q9RSJ9 - symbol:rpsM "30S ribosomal protein S13... 321 7.1e-29 1
UNIPROTKB|Q9XD12 - symbol:rpsM "30S ribosomal protein S13... 315 3.1e-28 1
TIGR_CMR|APH_0301 - symbol:APH_0301 "ribosomal protein S1... 312 6.4e-28 1
TIGR_CMR|DET_0499 - symbol:DET_0499 "ribosomal protein S1... 309 1.3e-27 1
UNIPROTKB|Q8A499 - symbol:rpsM "30S ribosomal protein S13... 305 3.5e-27 1
UNIPROTKB|Q7NFF2 - symbol:rpsM "30S ribosomal protein S13... 303 5.7e-27 1
TIGR_CMR|NSE_0287 - symbol:NSE_0287 "ribosomal protein S1... 300 1.2e-26 1
UNIPROTKB|O06327 - symbol:rpsM "30S ribosomal protein S13... 299 1.5e-26 1
TIGR_CMR|CJE_1764 - symbol:CJE_1764 "ribosomal protein S1... 299 1.5e-26 1
UNIPROTKB|O86773 - symbol:rpsM "30S ribosomal protein S13... 287 2.9e-25 1
UNIPROTKB|A8JDP6 - symbol:PRPS13 "Plastid ribosomal prote... 281 1.2e-24 1
TAIR|locus:2145618 - symbol:EMB3137 "EMBRYO DEFECTIVE 313... 280 1.6e-24 1
UNIPROTKB|Q3KLI8 - symbol:rpsM "30S ribosomal protein S13... 268 2.9e-23 1
TAIR|locus:2203216 - symbol:AT1G77750 species:3702 "Arabi... 250 2.4e-21 1
POMBASE|SPCC1795.07 - symbol:SPCC1795.07 "mitochondrial r... 235 9.2e-20 1
UNIPROTKB|Q8HCP0 - symbol:rps13 "Ribosomal protein S13" s... 201 3.7e-16 1
UNIPROTKB|Q5B4R2 - symbol:AN4468.2 "Putative uncharacteri... 175 2.1e-13 1
ASPGD|ASPL0000076821 - symbol:AN4468 species:162425 "Emer... 174 2.7e-13 1
UNIPROTKB|Q0DPA4 - symbol:Os03g0704000 "Os03g0704000 prot... 172 4.4e-13 1
UNIPROTKB|Q7S2C2 - symbol:NCU09539 "Putative uncharacteri... 165 2.4e-12 1
UNIPROTKB|Q2F922 - symbol:rps13 "Ribosomal protein S13" s... 162 5.0e-12 1
UNIPROTKB|Q2F974 - symbol:rps13 "Ribosomal protein S13" s... 162 5.0e-12 1
CGD|CAL0002110 - symbol:orf19.6406 species:5476 "Candida ... 159 1.0e-11 1
SGD|S000005025 - symbol:SWS2 "Putative mitochondrial ribo... 159 1.0e-11 1
UNIPROTKB|Q755U6 - symbol:AER422C "AER422Cp" species:2848... 155 2.8e-11 1
DICTYBASE|DDB_G0276415 - symbol:rps18 "40S ribosomal prot... 91 3.1e-11 2
UNIPROTKB|Q7RXX0 - symbol:NCU00475 "40S ribosomal protein... 91 2.6e-10 2
UNIPROTKB|A8J3J1 - symbol:MRPS13 "Mitochondrial ribosomal... 139 1.4e-09 1
ASPGD|ASPL0000026438 - symbol:AN5441 species:162425 "Emer... 84 2.8e-08 2
UNIPROTKB|Q5B1Y9 - symbol:AN5441.2 "Ribosomal protein S13... 84 2.8e-08 2
WB|WBGene00004487 - symbol:rps-18 species:6239 "Caenorhab... 83 9.3e-08 2
UNIPROTKB|O18240 - symbol:rps-18 "Protein RPS-18" species... 83 9.3e-08 2
UNIPROTKB|A8HVP2 - symbol:RPS18 "Ribosomal protein S18" s... 83 1.4e-07 2
UNIPROTKB|G4MNZ8 - symbol:MGG_05661 "40S ribosomal protei... 80 8.6e-07 2
FB|FBgn0010411 - symbol:RpS18 "Ribosomal protein S18" spe... 78 2.6e-06 2
GENEDB_PFALCIPARUM|PF11_0272 - symbol:PF11_0272 "ribosoma... 100 1.9e-05 1
UNIPROTKB|Q756F0 - symbol:AER315C "AER315Cp" species:2848... 93 0.00010 1
UNIPROTKB|Q8TRR2 - symbol:rps13 "30S ribosomal protein S1... 93 0.00011 1
UNIPROTKB|Q7R7S0 - symbol:PY07508 "Ribosomal protein S13/... 92 0.00013 1
UNIPROTKB|Q8H588 - symbol:OJ1656_E11.108 "Putative riboso... 89 0.00027 1
UNIPROTKB|Q8H590 - symbol:OJ1656_E11.104 "Putative riboso... 88 0.00035 1
SGD|S000002858 - symbol:RPS18A "Protein component of the ... 88 0.00035 1
SGD|S000004488 - symbol:RPS18B "Protein component of the ... 88 0.00035 1
TAIR|locus:2199670 - symbol:PFL "POINTED FIRST LEAVES" sp... 88 0.00035 1
TAIR|locus:2009066 - symbol:AT1G34030 species:3702 "Arabi... 88 0.00035 1
TAIR|locus:2005541 - symbol:RPS18C "S18 ribosomal protein... 88 0.00035 1
>TIGR_CMR|SO_0253 [details] [associations]
symbol:SO_0253 "ribosomal protein S13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_715893.1 ProteinModelPortal:Q8EK48
SMR:Q8EK48 GeneID:1168136 KEGG:son:SO_0253 PATRIC:23520199
Uniprot:Q8EK48
Length = 118
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 75/114 (65%), Positives = 98/114 (85%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP+ +H +I LTAI+GIGR+RA+ IC T I+ T KIK+L++ +++ LREE+
Sbjct: 1 MARIAGINIPDQKHTVIALTAIFGIGRTRARAICAATSIAETAKIKELSEAQIDTLREEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+K+++EGDLRRE SMNIKRL+DL CYRG+RHR+SLP RGQRT+TNARTRKGPR+
Sbjct: 61 AKYLVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRK 114
>TIGR_CMR|CPS_0623 [details] [associations]
symbol:CPS_0623 "ribosomal protein S13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_267373.1 ProteinModelPortal:Q488Z1
SMR:Q488Z1 STRING:Q488Z1 PRIDE:Q488Z1 GeneID:3519508
KEGG:cps:CPS_0623 PATRIC:21464573
BioCyc:CPSY167879:GI48-710-MONOMER Uniprot:Q488Z1
Length = 118
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 74/114 (64%), Positives = 93/114 (81%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP+ +H +I +TAIYGIG +RAK IC T I+ + KI +L++ +++ LR E+
Sbjct: 1 MARIAGINIPDRKHAVIAITAIYGIGATRAKAICAATGIAESTKISELDEAKIDLLRAEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
KF +EGDLRRE SMNIKRL+DL CYRGIRHR+SLP RGQRT+TNARTRKGPR+
Sbjct: 61 DKFTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRK 114
>UNIPROTKB|A6UZL0 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:CP000744
GenomeReviews:CP000744_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_001346245.1
ProteinModelPortal:A6UZL0 SMR:A6UZL0 STRING:A6UZL0 PRIDE:A6UZL0
GeneID:5355004 KEGG:pap:PSPA7_0859 PATRIC:19823551
BioCyc:PAER381754:GHMY-924-MONOMER Uniprot:A6UZL0
Length = 118
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 70/114 (61%), Positives = 92/114 (80%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIP+N+H +I LT IYG+GR+ A+ IC T ++ KIKDL+D ++++LR E+
Sbjct: 1 MARIAGVNIPDNKHTVISLTYIYGVGRTTAQNICAATGVNPAAKIKDLSDEQIDQLRNEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+K EGDLRRE +MNIKRL+DL CYRG+RHR+ LP RGQRT+TNARTRKGPR+
Sbjct: 61 AKHTTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 114
>UNIPROTKB|P0A7S9 [details] [associations]
symbol:rpsM species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 EMBL:U18997 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW
PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 SUPFAM:SSF46946
PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ EMBL:X02543 EMBL:M12432
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO
PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M
PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M
PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21
PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10
PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR
PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX
PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV
PDBsum:4GAQ PDBsum:4GD2 ProtClustDB:PRK05179 EMBL:M10213 PIR:A23807
RefSeq:NP_417757.1 RefSeq:YP_492134.1 ProteinModelPortal:P0A7S9
SMR:P0A7S9 DIP:DIP-35855N IntAct:P0A7S9 MINT:MINT-1290225
PaxDb:P0A7S9 PRIDE:P0A7S9 EnsemblBacteria:EBESCT00000003493
EnsemblBacteria:EBESCT00000015980 GeneID:12934445 GeneID:947791
KEGG:ecj:Y75_p3878 KEGG:eco:b3298 PATRIC:32122028 EchoBASE:EB0905
EcoGene:EG10912 BioCyc:EcoCyc:EG10912-MONOMER
BioCyc:ECOL316407:JW3260-MONOMER EvolutionaryTrace:P0A7S9
Genevestigator:P0A7S9 Uniprot:P0A7S9
Length = 118
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 67/114 (58%), Positives = 94/114 (82%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP+++H +I LT+IYG+G++R+K I I+ KI +L++ +++ LR+E+
Sbjct: 1 MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+KF++EGDLRRE SM+IKRL+DL CYRG+RHR+ LP RGQRT+TNARTRKGPR+
Sbjct: 61 AKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 114
>UNIPROTKB|Q9KP05 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:D82061
RefSeq:NP_232202.1 ProteinModelPortal:Q9KP05 SMR:Q9KP05
DNASU:2615591 GeneID:2615591 KEGG:vch:VC2574 PATRIC:20084174
Uniprot:Q9KP05
Length = 118
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 69/114 (60%), Positives = 94/114 (82%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP+++H +I LTAIYGIG++R+K I I+ + KI +L + ++++LR+ +
Sbjct: 1 MARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+K+ +EGDLRRE SMNIKRL+DL CYRG+RHR+SLP RGQRT+TNARTRKGPR+
Sbjct: 61 AKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRK 114
>TIGR_CMR|VC_2574 [details] [associations]
symbol:VC_2574 "ribosomal protein S13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 PIR:D82061 RefSeq:NP_232202.1
ProteinModelPortal:Q9KP05 SMR:Q9KP05 DNASU:2615591 GeneID:2615591
KEGG:vch:VC2574 PATRIC:20084174 Uniprot:Q9KP05
Length = 118
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 69/114 (60%), Positives = 94/114 (82%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GINIP+++H +I LTAIYGIG++R+K I I+ + KI +L + ++++LR+ +
Sbjct: 1 MARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGV 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+K+ +EGDLRRE SMNIKRL+DL CYRG+RHR+SLP RGQRT+TNARTRKGPR+
Sbjct: 61 AKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRK 114
>TIGR_CMR|CHY_2284 [details] [associations]
symbol:CHY_2284 "ribosomal protein S13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_361093.1
ProteinModelPortal:Q3A9U1 SMR:Q3A9U1 STRING:Q3A9U1 GeneID:3726461
KEGG:chy:CHY_2284 PATRIC:21277639 HOGENOM:HOG000039878
BioCyc:CHYD246194:GJCN-2283-MONOMER Uniprot:Q3A9U1
Length = 123
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 70/122 (57%), Positives = 90/122 (73%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+++P ++ + I LT IYGIGR A I + T I+ ++KDL + E+ KLR+EI
Sbjct: 1 MARIAGVDLPRDKRVEIALTYIYGIGRPTANVILKKTGINPDTRVKDLTEEEVAKLRDEI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
K + +EG+LRRE ++NIKRLI++ CYRGIRHRK LP RGQRTRTNARTRKGPRR
Sbjct: 61 EKNYKVEGELRREVALNIKRLIEIGCYRGIRHRKGLPVRGQRTRTNARTRKGPRRTVGVK 120
Query: 120 RK 121
RK
Sbjct: 121 RK 122
>TIGR_CMR|CBU_0260 [details] [associations]
symbol:CBU_0260 "ribosomal protein S13/S18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:NP_819304.1 ProteinModelPortal:P59753 SMR:P59753
GeneID:1208141 KEGG:cbu:CBU_0260 PATRIC:17929213
BioCyc:CBUR227377:GJ7S-267-MONOMER Uniprot:P59753
Length = 119
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 70/116 (60%), Positives = 86/116 (74%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
RI G+NIP +H I L AIYGIG SRA +IC+ KI K+KDL++ EL+ LR E+ K
Sbjct: 4 RIAGVNIPVQKHARIALQAIYGIGNSRALEICKEAKIDPATKVKDLSEAELDALRTEVGK 63
Query: 63 FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQS 118
F +EGDLRRE SM+IKR +DL Y GIRHR+ LP RGQRTR+NARTRKG R+ +S
Sbjct: 64 FSVEGDLRRERSMDIKRKMDLGAYEGIRHRRGLPLRGQRTRSNARTRKGKRKPIRS 119
>TIGR_CMR|SPO_0509 [details] [associations]
symbol:SPO_0509 "ribosomal protein S13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_165771.1 ProteinModelPortal:Q5LW34
SMR:Q5LW34 GeneID:3195393 KEGG:sil:SPO0509 PATRIC:23374281
Uniprot:Q5LW34
Length = 122
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 67/122 (54%), Positives = 87/122 (71%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIP + + I LT I GIG + AK ICE I T+++ +L+D E+ +RE I
Sbjct: 1 MARIAGVNIPTAKRVPIALTYITGIGNTSAKAICEAVGIDATRRVNELSDAEILAIREHI 60
Query: 61 -SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ + +EGDLRRE MNIKRL+DL CYRG+RHR++LP RGQRT TNARTRKGP +A
Sbjct: 61 DANYSVEGDLRREVQMNIKRLMDLGCYRGLRHRRNLPVRGQRTHTNARTRKGPAKAIAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|O66486 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224324
"Aquifex aeolicus VF5" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000657 GenomeReviews:AE000657_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:C70307
RefSeq:NP_213046.1 ProteinModelPortal:O66486 SMR:O66486
GeneID:1192499 KEGG:aae:aq_074 PATRIC:20957847
BioCyc:AAEO224324:GJBH-61-MONOMER Uniprot:O66486
Length = 126
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 66/122 (54%), Positives = 89/122 (72%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+++PNN+ + + LT IYGIG SRA++ICE T I TK++ +L +EL LR+ I
Sbjct: 1 MARIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ + +EGDLRRE +NIK+L D+ CYRGIRH + LP RGQ+TRTNARTRKG R+
Sbjct: 61 DENYKVEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRGQQTRTNARTRKGKRKTVGGT 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|Q89JA6 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935 EMBL:BA000040
GenomeReviews:BA000040_GR eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_772018.1
ProteinModelPortal:Q89JA6 SMR:Q89JA6 GeneID:1051268
KEGG:bja:bll5378 PATRIC:21194446
BioCyc:BJAP224911:GJEJ-5418-MONOMER Uniprot:Q89JA6
Length = 122
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 64/122 (52%), Positives = 88/122 (72%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIP N+ ++I L I+GIG+ A +I E KI +++ L+D E+ ++RE I
Sbjct: 1 MARIAGVNIPTNKRVLIALQYIHGIGQKIAGEILEKVKIPVDRRVSQLSDAEVLQIREVI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ +++EGDLRRE +NIKRL+DL CYRG+RHR+ LP RGQRT TNARTRKGP +A
Sbjct: 61 DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|P20282 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 EMBL:L47971 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 EMBL:M26414 EMBL:M13957
PIR:C32307 RefSeq:NP_388022.2 ProteinModelPortal:P20282 SMR:P20282
EnsemblBacteria:EBBACT00000002700 GeneID:938928 KEGG:bsu:BSU01410
PATRIC:18971793 GenoList:BSU01410 BioCyc:BSUB:BSU01410-MONOMER
Uniprot:P20282
Length = 121
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 61/121 (50%), Positives = 89/121 (73%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G++IP ++ ++I LT I+GIGR+ A+++ + +S +++DL + EL K+R+ I
Sbjct: 1 MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDII 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
K +EGDLRRE S+NIKRLI++ YRGIRHR+ LP RGQ ++ NARTRKGPRR + +
Sbjct: 61 DKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>UNIPROTKB|Q749B0 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_953877.1 ProteinModelPortal:Q749B0
SMR:Q749B0 GeneID:2687149 KEGG:gsu:GSU2834 PATRIC:22028513
BioCyc:GSUL243231:GH27-2793-MONOMER Uniprot:Q749B0
Length = 122
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 66/122 (54%), Positives = 89/122 (72%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GI++P N+ I I LT I+GIGR+ A++I T +S + +L ++E+ K+R+ I
Sbjct: 1 MARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYI 60
Query: 61 SKFI-IEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
K + +EGDLRR+ SM+IKRL+DL CYRG+RHRK LP RGQRT+TNARTRKGP R
Sbjct: 61 DKNLKVEGDLRRDVSMDIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TIGR_CMR|GSU_2834 [details] [associations]
symbol:GSU_2834 "ribosomal protein S13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_953877.1
ProteinModelPortal:Q749B0 SMR:Q749B0 GeneID:2687149
KEGG:gsu:GSU2834 PATRIC:22028513
BioCyc:GSUL243231:GH27-2793-MONOMER Uniprot:Q749B0
Length = 122
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 66/122 (54%), Positives = 89/122 (72%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GI++P N+ I I LT I+GIGR+ A++I T +S + +L ++E+ K+R+ I
Sbjct: 1 MARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYI 60
Query: 61 SKFI-IEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
K + +EGDLRR+ SM+IKRL+DL CYRG+RHRK LP RGQRT+TNARTRKGP R
Sbjct: 61 DKNLKVEGDLRRDVSMDIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TIGR_CMR|ECH_0430 [details] [associations]
symbol:ECH_0430 "ribosomal protein S13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_507248.1
ProteinModelPortal:Q2GH35 SMR:Q2GH35 STRING:Q2GH35 GeneID:3927582
KEGG:ech:ECH_0430 PATRIC:20576337
BioCyc:ECHA205920:GJNR-431-MONOMER Uniprot:Q2GH35
Length = 123
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 64/122 (52%), Positives = 87/122 (71%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+NIP N+ I+I LT IYGIG S A +ICE I ++ +L+D+E+ ++R I
Sbjct: 1 MARIAGVNIPTNKRIVIALTYIYGIGLSLANRICEGCNIDHNVRVVNLSDDEIIRIRNFI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ +I+EGDLR+E SMNIK L D+ CYRG+RHR+ LP RGQRT TNA+TRKG + +
Sbjct: 61 RENYIVEGDLRKEVSMNIKFLTDIGCYRGLRHRRGLPVRGQRTHTNAKTRKGRSKLPVAA 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|A9WH90 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:CP000909 GenomeReviews:CP000909_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_001635991.1
ProteinModelPortal:A9WH90 SMR:A9WH90 STRING:A9WH90 PRIDE:A9WH90
GeneID:5826857 KEGG:cau:Caur_2393 PATRIC:21415911
BioCyc:CAUR324602:GIXU-2432-MONOMER Uniprot:A9WH90
Length = 127
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 60/122 (49%), Positives = 88/122 (72%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G++IP N+ I I +T IYGIGRS +I ++ ++++DL + E+ ++RE +
Sbjct: 1 MARIAGVDIPRNKKIEIAITYIYGIGRSNGMEILRKANVNPERRVRDLTEEEVGRIREIV 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ + +EGDLRRE +NIKRL+D+ CYRG+RHR+ +P RGQRTRTNARTR+G R A +
Sbjct: 61 DREYRVEGDLRREVQLNIKRLMDIGCYRGLRHRRGMPVRGQRTRTNARTRRGRRGQAIGI 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TIGR_CMR|BA_0135 [details] [associations]
symbol:BA_0135 "ribosomal protein S13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:NP_842703.1 RefSeq:YP_016740.1 RefSeq:YP_026421.1
ProteinModelPortal:P62176 SMR:P62176 DNASU:1085954
EnsemblBacteria:EBBACT00000008086 EnsemblBacteria:EBBACT00000018614
EnsemblBacteria:EBBACT00000020746 GeneID:1085954 GeneID:2819393
GeneID:2850910 KEGG:ban:BA_0135 KEGG:bar:GBAA_0135 KEGG:bat:BAS0135
BioCyc:BANT260799:GJAJ-146-MONOMER
BioCyc:BANT261594:GJ7F-148-MONOMER Uniprot:P62176
Length = 121
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 59/121 (48%), Positives = 89/121 (73%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G++IP ++ ++I LT ++GIGR+ A+KI IS +++DL ++EL ++R+ I
Sbjct: 1 MARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDII 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
+ +EGDLRRE S+NIKRL+++ YRG+RHR+ LP RGQ ++ NARTRKGPRR + +
Sbjct: 61 DRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>UNIPROTKB|Q9X1I5 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243274
"Thermotoga maritima MSB8" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000512 GenomeReviews:AE000512_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 PIR:D72247 RefSeq:NP_229275.1
ProteinModelPortal:Q9X1I5 SMR:Q9X1I5 GeneID:897029 KEGG:tma:TM1475
PATRIC:23937906 Uniprot:Q9X1I5
Length = 125
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 63/122 (51%), Positives = 86/122 (70%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RIVG+ +PNN+ + + LT IYGIGRSR+ +I + T I K++ DL D E+ K+ + I
Sbjct: 1 MARIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
F +EG+LR E NI+RLI++ CYRGIRH+ LP RGQ+TR+NARTRKGPR +
Sbjct: 61 QDHFKVEGELRSEVERNIRRLIEIGCYRGIRHKLGLPVRGQKTRSNARTRKGPRPSRIKT 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|Q9RSJ9 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243230
"Deinococcus radiodurans R1" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000513 GenomeReviews:AE000513_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:F75312
RefSeq:NP_295848.1 ProteinModelPortal:Q9RSJ9 SMR:Q9RSJ9
GeneID:1799972 KEGG:dra:DR_2125 PATRIC:21631926
BioCyc:DRAD243230:GH46-2493-MONOMER Uniprot:Q9RSJ9
Length = 126
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 62/122 (50%), Positives = 85/122 (69%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI GI++P + + I LT IYGIG +R+K+I T +S ++K+L++ E LRE I
Sbjct: 1 MARIAGIDLPREKRVEIALTYIYGIGLTRSKEILARTGVSPDTRVKNLSEAEQSTLREAI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
K + +EGDLR E NIKRL+D+ YRG+RHR+ LP RGQRT+TNARTRKGP++
Sbjct: 61 EKTYKVEGDLRNEVGQNIKRLMDIGAYRGLRHRRGLPVRGQRTKTNARTRKGPKKTVAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|Q9XD12 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935
EMBL:AE010300 GenomeReviews:AE010300_GR eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
EMBL:AF115283 RefSeq:NP_710943.1 ProteinModelPortal:Q9XD12
SMR:Q9XD12 PaxDb:Q9XD12 PRIDE:Q9XD12 GeneID:1150105
KEGG:lil:LA_0762 PATRIC:22382384 BioCyc:LINT189518:GJBB-621-MONOMER
Uniprot:Q9XD12
Length = 125
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 61/124 (49%), Positives = 87/124 (70%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNE---LEKLR 57
M RI GI++P + I++GLT I+GIG S +K I + I + ++KDLN+++ + K
Sbjct: 1 MARIAGIDLPREKRIVVGLTYIFGIGNSLSKLILKKAGIDESIRVKDLNESQEAAIRKTL 60
Query: 58 EEISKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQ 117
EE +K +EGDLR E +NIKRL+D+ CYRG+RHR+ LP GQRTRTNARTRKG ++
Sbjct: 61 EETAK--VEGDLRSEIQLNIKRLMDIGCYRGLRHRRGLPVNGQRTRTNARTRKGGKKTVA 118
Query: 118 SLRK 121
+ +K
Sbjct: 119 NKKK 122
>TIGR_CMR|APH_0301 [details] [associations]
symbol:APH_0301 "ribosomal protein S13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
RefSeq:YP_504913.1 ProteinModelPortal:Q2GL38 SMR:Q2GL38
STRING:Q2GL38 GeneID:3931105 KEGG:aph:APH_0301 PATRIC:20949176
ProtClustDB:PRK05179 BioCyc:APHA212042:GHPM-331-MONOMER
Uniprot:Q2GL38
Length = 123
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 60/122 (49%), Positives = 85/122 (69%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+N+P ++ +++ LT IYGIG S A +ICE I ++ L++ ++ K+R I
Sbjct: 1 MARIGGVNVPVDKRVVVALTYIYGIGTSLANRICEGCGIDKNVRVSALSEEDVVKIRNFI 60
Query: 61 -SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ ++E DLR+E +MNIK L+D+ CYRG+RHRK LP RGQRT TNARTRKG R A +
Sbjct: 61 RAGCVVEADLRKEVAMNIKFLMDIGCYRGLRHRKKLPVRGQRTHTNARTRKGGSRLAVAA 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TIGR_CMR|DET_0499 [details] [associations]
symbol:DET_0499 "ribosomal protein S13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_181243.1 ProteinModelPortal:Q3Z956
SMR:Q3Z956 STRING:Q3Z956 GeneID:3230223 KEGG:det:DET0499
PATRIC:21608067 BioCyc:DETH243164:GJNF-499-MONOMER Uniprot:Q3Z956
Length = 129
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 57/115 (49%), Positives = 82/115 (71%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G +IP+N+ + L I+GIG +R++K+ + ++ L D E+ +LRE I
Sbjct: 1 MVRIAGTDIPDNKQVYFSLQYIFGIGPARSEKVLVQAGVDKAIRVNKLTDEEINRLREII 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
K + +EGDLR+E ++NIKRLID+ CYRG RH+ +LP RGQRT+TNARTR+GPR+
Sbjct: 61 DKEYRVEGDLRKEIALNIKRLIDIGCYRGNRHKHNLPVRGQRTKTNARTRRGPRK 115
>UNIPROTKB|Q8A499 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE015928 GenomeReviews:AE015928_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_811616.1
ProteinModelPortal:Q8A499 SMR:Q8A499 GeneID:1072473
KEGG:bth:BT_2704 PATRIC:21060349
BioCyc:BTHE226186:GJXV-2758-MONOMER Uniprot:Q8A499
Length = 126
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 58/120 (48%), Positives = 83/120 (69%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI-S 61
RIVG+++P N+ I LT +YGIGRS + KI + + K+KD D++ K+RE I +
Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGA 63
Query: 62 KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121
++ +EGDLR E +NIKRL+D+ CYRG+RHR LP RGQ T+ NARTRKG ++ + +K
Sbjct: 64 EYKVEGDLRSEIQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKK 123
>UNIPROTKB|Q7NFF2 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935 EMBL:BA000045
GenomeReviews:BA000045_GR eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_926520.1 ProteinModelPortal:Q7NFF2
SMR:Q7NFF2 GeneID:2601978 KEGG:gvi:gvip484 PATRIC:22046643
BioCyc:GVIO251221:GH9A-3624-MONOMER Uniprot:Q7NFF2
Length = 127
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 62/122 (50%), Positives = 84/122 (68%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G++IP + + I LT I+GIG SRA +I T I+ ++++L D ++ LREEI
Sbjct: 1 MARIAGVDIPREKRVEIALTYIFGIGPSRATQILLSTGINPNLRVRELTDVQVSLLREEI 60
Query: 61 S-KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
K+ +EGDLRR ++NIKRL+D+ C RG RHR LP RGQRTRTNARTR+G R+
Sbjct: 61 EQKYQVEGDLRRFENINIKRLMDIGCLRGRRHRLGLPVRGQRTRTNARTRRGGRKTVAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TIGR_CMR|NSE_0287 [details] [associations]
symbol:NSE_0287 "ribosomal protein S13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_506178.1 ProteinModelPortal:Q2GEB8
SMR:Q2GEB8 STRING:Q2GEB8 PRIDE:Q2GEB8 GeneID:3932234
KEGG:nse:NSE_0287 PATRIC:22680667
BioCyc:NSEN222891:GHFU-314-MONOMER Uniprot:Q2GEB8
Length = 123
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 56/120 (46%), Positives = 80/120 (66%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
R +G+N+P+N+ +++ LT +YGIG A+KIC I + K+ DL +L + I
Sbjct: 2 RFLGVNLPDNKAVVVALTYLYGIGLPTARKICSSLAIDGSAKLPDLEQEQLNSIMAYIKN 61
Query: 63 FI-IEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121
I EG+LR+ + +IK L+D+ CYRG+RHRK+LP RGQRTRTNARTRKG R + +K
Sbjct: 62 DIPFEGELRKSVAFSIKHLVDIKCYRGVRHRKNLPVRGQRTRTNARTRKGKVRVPIAAKK 121
>UNIPROTKB|O06327 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842583 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
PIR:A70566 RefSeq:NP_217977.1 RefSeq:NP_338092.1
RefSeq:YP_006516949.1 ProteinModelPortal:O06327 SMR:O06327
PRIDE:O06327 EnsemblBacteria:EBMYCT00000002449
EnsemblBacteria:EBMYCT00000070559 GeneID:13317067 GeneID:887514
GeneID:926626 KEGG:mtc:MT3567 KEGG:mtu:Rv3460c KEGG:mtv:RVBD_3460c
PATRIC:18129571 TubercuList:Rv3460c Uniprot:O06327
Length = 124
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 55/122 (45%), Positives = 85/122 (69%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M R+VG+++P ++ + + LT I+GIGR+R+ +I T I + +DL + +L LR+ I
Sbjct: 1 MARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYI 60
Query: 61 SKFI-IEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
+ +EGDLRRE +I+R I++ CY+G+RHR+ +P RGQRT+TNARTRKGP+R
Sbjct: 61 EANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TIGR_CMR|CJE_1764 [details] [associations]
symbol:CJE_1764 "ribosomal protein S13/S18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:YP_179736.1 ProteinModelPortal:Q5HSJ9 SMR:Q5HSJ9
STRING:Q5HSJ9 GeneID:3232391 KEGG:cjr:CJE1764 PATRIC:20045338
BioCyc:CJEJ195099:GJC0-1794-MONOMER Uniprot:Q5HSJ9
Length = 121
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 56/115 (48%), Positives = 85/115 (73%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+++P + I GLT IYGIG ++KI + IS K++ +L+++E +R+EI
Sbjct: 1 MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKRVHELSEDEAAAIRKEI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+ +++EGDLR++ +M+IK L+DL +RG+RHRK LP RGQ+T+TNARTRKG R+
Sbjct: 61 QENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQKTKTNARTRKGKRK 115
>UNIPROTKB|O86773 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:AL939121
GenomeReviews:AL645882_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:T35556
RefSeq:NP_628885.1 ProteinModelPortal:O86773 SMR:O86773
PhosSite:P11111095 GeneID:1100168 KEGG:sco:SCO4727 PATRIC:23739276
Uniprot:O86773
Length = 126
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 53/122 (43%), Positives = 82/122 (67%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M R+ G++IP + + I LT ++GIGR+ +++ T + +++DL++ +L +RE +
Sbjct: 1 MARVSGVDIPREKRVEIALTYVFGIGRTLSQQTLAATGVDPNTRVRDLSEEQLVAIREYV 60
Query: 61 SKFI-IEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
I EGDLRRE +I+R +++ Y+G+RHR+ LP RGQRT TNARTRKGPRRA
Sbjct: 61 DNNIKTEGDLRREVQADIRRKVEIGTYQGLRHRRGLPVRGQRTSTNARTRKGPRRAIAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>UNIPROTKB|A8JDP6 [details] [associations]
symbol:PRPS13 "Plastid ribosomal protein S13" species:3055
"Chlamydomonas reinhardtii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0009941
GO:GO:0042254 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 EMBL:DS496163
RefSeq:XP_001700563.1 UniGene:Cre.14084 ProteinModelPortal:A8JDP6
SMR:A8JDP6 STRING:A8JDP6 PRIDE:A8JDP6 ProMEX:A8JDP6
EnsemblPlants:EDO98007 GeneID:5726085 KEGG:cre:CHLREDRAFT_195627
ProtClustDB:CLSN2923472 HAMAP:MF_01315_B Uniprot:A8JDP6
Length = 164
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
R+ + IPN++ I + L I+GIG + A+ I T + KK +LN+ E+ KLR E+ K
Sbjct: 44 RVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVEN-KKTYELNEEEINKLRSEVEK 102
Query: 63 FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121
+ E DLRR + NIKRL D+ CYRG RH LP RGQRT+TNARTRKG + + +K
Sbjct: 103 YTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGKAKTVANKKK 161
>TAIR|locus:2145618 [details] [associations]
symbol:EMB3137 "EMBRYO DEFECTIVE 3137" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0015935 "small ribosomal
subunit" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0042254 GO:GO:0005840 GO:GO:0003735
EMBL:AL163817 GO:GO:0019843 SUPFAM:SSF46946 EMBL:Z47986 EMBL:X91955
EMBL:X86734 EMBL:AY052738 EMBL:AY039533 EMBL:Z17611 IPI:IPI00535943
PIR:S59594 RefSeq:NP_568299.1 UniGene:At.19669
ProteinModelPortal:P42732 SMR:P42732 STRING:P42732 PaxDb:P42732
PRIDE:P42732 EnsemblPlants:AT5G14320.1 GeneID:831282
KEGG:ath:AT5G14320 GeneFarm:44 TAIR:At5g14320 eggNOG:COG0099
HOGENOM:HOG000039879 InParanoid:P42732 KO:K02952 OMA:REVAMNI
PhylomeDB:P42732 ProtClustDB:CLSN2689668 Genevestigator:P42732
GermOnline:AT5G14320 HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 Uniprot:P42732
Length = 169
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 58/120 (48%), Positives = 82/120 (68%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKI-KDLNDNELEKLREEIS 61
R+ G+ IP N+ I L I+GIGR+RA++I + + KI KD+ + EL LR+E+S
Sbjct: 49 RVGGVEIPANKRIEYSLQYIHGIGRTRARQI--LVDLQMENKITKDMAEEELIILRDEVS 106
Query: 62 KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121
K++IEGDLRR ++ IKRL ++ CYRG+RH + LPCRGQRT+ N RT KG + A +K
Sbjct: 107 KYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 166
>UNIPROTKB|Q3KLI8 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:CP000051 GenomeReviews:CP000051_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_328332.1
ProteinModelPortal:Q3KLI8 SMR:Q3KLI8 STRING:Q3KLI8 GeneID:3687704
KEGG:cta:CTA_0558 PATRIC:32023022
BioCyc:CTRA315277:GI4C-584-MONOMER Uniprot:Q3KLI8
Length = 122
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/122 (45%), Positives = 80/122 (65%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI+GI+IP + + I LT IYGIG + +K+I +++ + +L + E+ +L +
Sbjct: 1 MPRIIGIDIPAKKKLKISLTYIYGIGPALSKEIIARLQLNPEARAAELTEEEVGRLNALL 60
Query: 61 -SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
S +++EGDLRR +IKRLI + YRG RHR SLP RGQRT+TN+RTRKG R+
Sbjct: 61 QSDYVVEGDLRRRVQSDIKRLITIHAYRGQRHRLSLPVRGQRTKTNSRTRKGKRKTVAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>TAIR|locus:2203216 [details] [associations]
symbol:AT1G77750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM;IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0019843 EMBL:AC012193 GO:GO:0005763 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 HAMAP:MF_01315
PANTHER:PTHR10871 EMBL:BT010186 IPI:IPI00540022 PIR:D96807
RefSeq:NP_177898.1 UniGene:At.34407 ProteinModelPortal:Q9CA19
SMR:Q9CA19 STRING:Q9CA19 PaxDb:Q9CA19 PRIDE:Q9CA19
EnsemblPlants:AT1G77750.1 GeneID:844111 KEGG:ath:AT1G77750
TAIR:At1g77750 InParanoid:Q9CA19 OMA:RSATTLF
ProtClustDB:CLSN2679459 Genevestigator:Q9CA19 GermOnline:AT1G77750
Uniprot:Q9CA19
Length = 154
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 52/120 (43%), Positives = 72/120 (60%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKI-CEVTKISTTKKIKDLNDNELEKLREEIS 61
R+ +PNN+ + GL +YGIGR ++ ++ C + T K +DL EL LREE+
Sbjct: 33 RVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLG--ITNKLARDLTGKELIDLREEVG 90
Query: 62 KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121
+ +LRR I+RL+++ CYRG RHR LPCRGQRT TNART+KG A +K
Sbjct: 91 QHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKK 150
>POMBASE|SPCC1795.07 [details] [associations]
symbol:SPCC1795.07 "mitochondrial ribosomal protein
subunit S37 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0032543 "mitochondrial translation"
evidence=ISO] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 PomBase:SPCC1795.07 GO:GO:0005829 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0032543
GO:GO:0019843 GO:GO:0005763 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 HAMAP:MF_01315 PANTHER:PTHR10871 HOGENOM:HOG000039878
OMA:RSATTLF PIR:T41136 RefSeq:NP_588037.1 ProteinModelPortal:O59772
STRING:O59772 EnsemblFungi:SPCC1795.07.1 GeneID:2538943
KEGG:spo:SPCC1795.07 OrthoDB:EOG4WHCWG NextBio:20800119
Uniprot:O59772
Length = 151
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/123 (38%), Positives = 76/123 (61%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M I+G+ + +++ + L + YGIG ++A++IC T ++++L + +L L + +
Sbjct: 1 MVYILGVAVNDDKPVRFALLSFYGIGHAKAEEICAKLSFHNTLRVRELTNVQLTTLSQLL 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKG----PRRAA 116
S IEGDLRR+ + +I RL+++ CYRG+RH LP GQ TRTNA+T K PRR
Sbjct: 61 SGMTIEGDLRRQRNADISRLVNIRCYRGMRHVNGLPVNGQNTRTNAKTAKKLNKVPRRGY 120
Query: 117 QSL 119
+L
Sbjct: 121 MTL 123
>UNIPROTKB|Q8HCP0 [details] [associations]
symbol:rps13 "Ribosomal protein S13" species:39947 "Oryza
sativa Japonica Group" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IC;IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 EMBL:BA000029 GenomeReviews:BA000029_GR
SUPFAM:SSF46946 GO:GO:0015935 KO:K02952 PANTHER:PTHR10871
RefSeq:YP_002000577.1 ProteinModelPortal:Q8HCP0 STRING:Q8HCP0
GeneID:6450193 KEGG:osa:6450193 Gramene:Q8HCP0 Uniprot:Q8HCP0
Length = 116
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M I+G + ++ + I LT + GIG +A ++C IS K+ +L +++++ + I
Sbjct: 1 MLYILGARLLPDEQVRIALTKMDGIGPKKAIQLCYRLGISGNIKMNELTKYQIDQIEQMI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
++ ++ +L+R +I+RLI +SCYRGIRH+ LP RGQRT TNART +
Sbjct: 61 AQDHVVHWELKRGERADIERLISISCYRGIRHQDGLPLRGQRTHTNARTAR 111
>UNIPROTKB|Q5B4R2 [details] [associations]
symbol:AN4468.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0006412 "translation"
evidence=IBA] [GO:0015935 "small ribosomal subunit" evidence=IBA]
[GO:0042254 "ribosome biogenesis" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 EMBL:AACD01000077 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871
HOGENOM:HOG000039878 OrthoDB:EOG4WHCWG RefSeq:XP_662072.1
ProteinModelPortal:Q5B4R2 STRING:Q5B4R2 GeneID:2872269
KEGG:ani:AN4468.2 Uniprot:Q5B4R2
Length = 130
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 44/120 (36%), Positives = 63/120 (52%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M I+G+N P Q + L +G+G + +I I T K+ +L + ++ L +
Sbjct: 1 MVFILGVNFPEGQ--LKSLQKFFGVGPQVSSRIMSRFHIHQTCKVGELANKQVLDLTAVL 58
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLR 120
S+ IE DLRR+ +IKRL + YRG RH LP RGQRTR N + RA Q +R
Sbjct: 59 SEMKIENDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQRTRNNNKIAIRLNRAWQGVR 118
>ASPGD|ASPL0000076821 [details] [associations]
symbol:AN4468 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0042173 "regulation of
sporulation resulting in formation of a cellular spore"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:BN001303 SUPFAM:SSF46946 PANTHER:PTHR10871
OMA:RSATTLF EnsemblFungi:CADANIAT00005983 Uniprot:C8V8H2
Length = 119
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M I+G+N P Q + L +G+G + +I I T K+ +L + ++ L +
Sbjct: 1 MVFILGVNFPEGQLVQKSLQKFFGVGPQVSSRIMSRFHIHQTCKVGELANKQVLDLTAVL 60
Query: 61 SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTN 105
S+ IE DLRR+ +IKRL + YRG RH LP RGQRTR N
Sbjct: 61 SEMKIENDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQRTRNN 105
>UNIPROTKB|Q0DPA4 [details] [associations]
symbol:Os03g0704000 "Os03g0704000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0042254 EMBL:AP008209
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871 RefSeq:NP_001051020.2
UniGene:Os.68758 STRING:Q0DPA4 GeneID:4333848 KEGG:osa:4333848
Gramene:Q0DPA4 Uniprot:Q0DPA4
Length = 203
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 36/86 (41%), Positives = 61/86 (70%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKI-KDLNDNELEKLREEIS 61
RI G+ IPN++ + L I+GIGRSR+++I + ++ K+ KDL++ E+ LR+E++
Sbjct: 48 RIGGVEIPNHKRVEYSLQYIHGIGRSRSRQI--LLDLNFDNKVTKDLSEEEVITLRKEVT 105
Query: 62 KFIIEGDLRREFSMNIKRLIDLSCYR 87
K++IEGDL+R + I+RL ++ CYR
Sbjct: 106 KYMIEGDLKRFNRVAIERLKEIRCYR 131
>UNIPROTKB|Q7S2C2 [details] [associations]
symbol:NCU09539 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
KO:K02952 PANTHER:PTHR10871 HOGENOM:HOG000039878 OrthoDB:EOG4WHCWG
OMA:MTIEGDA EMBL:AABX02000041 RefSeq:XP_958758.1
ProteinModelPortal:Q7S2C2 STRING:Q7S2C2
EnsemblFungi:EFNCRT00000007552 GeneID:3874905 KEGG:ncr:NCU09539
Uniprot:Q7S2C2
Length = 119
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 43/113 (38%), Positives = 58/113 (51%)
Query: 1 MTRIVGINIPNNQHIII--GLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLRE 58
M I+G+N N+H ++ L + YG+G+ + +I I K+ L + L
Sbjct: 1 MVFILGVNF--NEHKLVQKALESFYGLGQQASARILAKYSIHPRAKMGTLPPKIVTALTA 58
Query: 59 EISKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTN-ARTRK 110
E+S IE D RR NIKRL D+ YRG RH LP RGQ+TR A RK
Sbjct: 59 ELSTMTIENDARRLVLDNIKRLRDMGTYRGRRHAMGLPVRGQQTRNQIANARK 111
>UNIPROTKB|Q2F922 [details] [associations]
symbol:rps13 "Ribosomal protein S13" species:39947 "Oryza
sativa Japonica Group" [GO:0005739 "mitochondrion" evidence=IC]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:DQ167807 EMBL:DQ167400 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 PANTHER:PTHR10871
ProteinModelPortal:Q2F922 STRING:Q2F922 Gramene:Q2F922 OMA:NARTARK
Uniprot:Q2F922
Length = 116
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 40/112 (35%), Positives = 68/112 (60%)
Query: 1 MTRIVGI-NIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREE 59
M+ I G ++P+ Q + I T + GIG +A ++ IS K+ +L +++++ +
Sbjct: 1 MSYISGARSLPDEQ-VRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQIEQM 59
Query: 60 ISK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
I++ ++ +L+R +I+RLI +S YRGIRH+ P RGQRT TNART +
Sbjct: 60 IAQDHVVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTAR 111
>UNIPROTKB|Q2F974 [details] [associations]
symbol:rps13 "Ribosomal protein S13" species:39946 "Oryza
sativa Indica Group" [GO:0005739 "mitochondrion" evidence=IC]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:DQ167399 SUPFAM:SSF46946 PANTHER:PTHR10871
EMBL:JN861111 EMBL:JN861112 EMBL:JF281153 EMBL:JF281154
EMBL:AP011077 RefSeq:YP_514659.1 ProteinModelPortal:Q2F974
GeneID:3950763 Gramene:Q2F974 Uniprot:Q2F974
Length = 116
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 40/112 (35%), Positives = 68/112 (60%)
Query: 1 MTRIVGI-NIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREE 59
M+ I G ++P+ Q + I T + GIG +A ++ IS K+ +L +++++ +
Sbjct: 1 MSYISGARSLPDEQ-VRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQIEQM 59
Query: 60 ISK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
I++ ++ +L+R +I+RLI +S YRGIRH+ P RGQRT TNART +
Sbjct: 60 IAQDHVVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTAR 111
>CGD|CAL0002110 [details] [associations]
symbol:orf19.6406 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0042173 "regulation
of sporulation resulting in formation of a cellular spore"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 CGD:CAL0002110 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000073 EMBL:AACQ01000072
SUPFAM:SSF46946 eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871
RefSeq:XP_716162.1 RefSeq:XP_716245.1 ProteinModelPortal:Q5A357
STRING:Q5A357 GeneID:3642115 GeneID:3642169 KEGG:cal:CaO19.13764
KEGG:cal:CaO19.6406 Uniprot:Q5A357
Length = 122
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 4 IVGINIPNNQHIIIGLT-AIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
+ G +I +N + IGL I+GIG A+++ I ++ L + ++ L +EIS+
Sbjct: 5 VFGKSIKHNFPVRIGLAKTIFGIGYQTAERLMAKVGIYPNCRMNQLTEPQIMDLNKEISQ 64
Query: 63 FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
++EG L+ + + +IK + Y G RH P RGQRT+TN T +
Sbjct: 65 LLVEGHLKHKINNDIKMKRTIGSYAGSRHALGFPVRGQRTKTNGSTAR 112
>SGD|S000005025 [details] [associations]
symbol:SWS2 "Putative mitochondrial ribosomal protein of the
small subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005763
"mitochondrial small ribosomal subunit" evidence=ISA] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=ISA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 SGD:S000005025 EMBL:BK006947 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 GO:GO:0032543 EMBL:DQ115393 EMBL:X86470
GO:GO:0005763 SUPFAM:SSF46946 GO:GO:0042173 RefSeq:NP_014325.3
GeneID:855650 KEGG:sce:YNL074C EMBL:Z71357 eggNOG:COG0099 KO:K02952
HAMAP:MF_01315 PANTHER:PTHR10871 HOGENOM:HOG000039878
OrthoDB:EOG4WHCWG PIR:S53897 RefSeq:NP_014318.3
ProteinModelPortal:P53937 SMR:P53937 DIP:DIP-5522N IntAct:P53937
MINT:MINT-539439 STRING:P53937 PaxDb:P53937 EnsemblFungi:YNL081C
GeneID:855643 KEGG:sce:YNL081C CYGD:YNL081c OMA:MTIEGDA
NextBio:979875 Genevestigator:P53937 GermOnline:YNL081C
Uniprot:P53937
Length = 143
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 37/111 (33%), Positives = 56/111 (50%)
Query: 1 MTRIVGINIPNNQHIIIGLTA-IYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREE 59
+ I+G + I I L + YGIG++ A+KIC ++ L++ ++ + E
Sbjct: 2 VVHILGKGFKGKEVIKIALASKFYGIGKTTAEKICSKLGFYPWMRMHQLSEPQIMSIASE 61
Query: 60 ISKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
+S IEGD R NI + Y G+RH LP RGQ TR NA+T +
Sbjct: 62 LSTMTIEGDARAIVKDNIALKRKIGSYSGMRHTLHLPVRGQHTRNNAKTAR 112
>UNIPROTKB|Q755U6 [details] [associations]
symbol:AER422C "AER422Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005829 "cytosol" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005739
GO:GO:0006412 GO:GO:0042254 GO:GO:0003723 GO:GO:0003735
EMBL:AE016818 GenomeReviews:AE016818_GR SUPFAM:SSF46946
GO:GO:0015935 KO:K02952 PANTHER:PTHR10871 HOGENOM:HOG000039878
OrthoDB:EOG4WHCWG OMA:MTIEGDA RefSeq:NP_985277.1
ProteinModelPortal:Q755U6 STRING:Q755U6 EnsemblFungi:AAS53101
GeneID:4621496 KEGG:ago:AGOS_AER422C PhylomeDB:Q755U6
Uniprot:Q755U6
Length = 144
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 1 MTRIVGINIPNNQHIIIGLTA-IYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREE 59
+ ++G + + IGL + YGIG ++++C + +++ L + ++ + E
Sbjct: 2 VVHVLGKAFKGKEVVRIGLASKFYGIGLKTSERLCAKLGLYPWMRMQSLTEPQIMAMSTE 61
Query: 60 ISKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
+SK IE D R NI + Y G+RH LP GQRTRTNA+T +
Sbjct: 62 LSKMTIEDDARAIVKENIALKRRIGSYAGLRHAMGLPVNGQRTRTNAKTAR 112
>DICTYBASE|DDB_G0276415 [details] [associations]
symbol:rps18 "40S ribosomal protein S18"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA;ISS;IBA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS;IBA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 dictyBase:DDB_G0276415 GO:GO:0005829 GO:GO:0006412
GenomeReviews:CM000151_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AAFI02000015 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI KO:K02964
RefSeq:XP_643120.1 ProteinModelPortal:Q869U7 SMR:Q869U7
STRING:Q869U7 PRIDE:Q869U7 EnsemblProtists:DDB0231058
GeneID:8620525 KEGG:ddi:DDB_G0276415 ProtClustDB:PTZ00134
Uniprot:Q869U7
Length = 154
Score = 91 (37.1 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
RI N+ + I LT + G+GR A +C+ I T+K+ +L+ +E+E+L
Sbjct: 16 RIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERL 69
Score = 76 (31.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 72 EFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNAR 107
+F +++RL + +RG+RH L RGQ+T+T R
Sbjct: 108 KFREDLERLKKIRAHRGVRHHFGLRVRGQKTKTTGR 143
>UNIPROTKB|Q7RXX0 [details] [associations]
symbol:NCU00475 "40S ribosomal protein S18" species:367110
"Neurospora crassa OR74A" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964
OrthoDB:EOG437VQ7 EMBL:AABX02000001 RefSeq:XP_956794.2
UniGene:Ncr.4507 ProteinModelPortal:Q7RXX0 SMR:Q7RXX0 STRING:Q7RXX0
EnsemblFungi:EFNCRT00000000145 GeneID:3872941 KEGG:ncr:NCU00475
Uniprot:Q7RXX0
Length = 156
Score = 91 (37.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q ++ LT I G+GR + +C+ + +K+ +L ELE++
Sbjct: 16 RLLNTNVDGKQKVVYSLTKIKGVGRRYSNLVCKKADVDLSKRAGELTSEELERI 69
Score = 67 (28.6 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 76 NIKRLIDLSCYRGIRHRKSLPCRGQRTRTNAR 107
+++RL + +RG+RH L RGQ T+T R
Sbjct: 112 DLERLKKIRAHRGLRHYWGLRVRGQHTKTTGR 143
>UNIPROTKB|A8J3J1 [details] [associations]
symbol:MRPS13 "Mitochondrial ribosomal protein S13"
species:3055 "Chlamydomonas reinhardtii" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412
GO:GO:0042254 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871 EMBL:DS496135
RefSeq:XP_001695933.1 UniGene:Cre.15766 ProteinModelPortal:A8J3J1
STRING:A8J3J1 EnsemblPlants:EDP01270 GeneID:5721441
KEGG:cre:CHLREDRAFT_191536 Uniprot:A8J3J1
Length = 124
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 17 IGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGD-LRREFSM 75
I L ++G+G+S + + E IS K+KD+ D+ ++K+ I + GD L+R+
Sbjct: 17 IALARVFGLGKSTSLAVSEACGISKDLKVKDVKDSYIQKVTAYIEANFVTGDTLKRQVRE 76
Query: 76 NIKRLIDLSCYRGIRHRKSLPCRGQRTRTNA-RTRK 110
N+ + ++ RG+RH LP +TR+N RK
Sbjct: 77 NVLEEVAINSRRGVRHTLGLPVSSAQTRSNGVNARK 112
>ASPGD|ASPL0000026438 [details] [associations]
symbol:AN5441 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006407 "rRNA export from
nucleus" evidence=IEA] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 EMBL:BN001305 GO:GO:0003735 EMBL:AACD01000094
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871
OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964 OrthoDB:EOG437VQ7
RefSeq:XP_663045.1 ProteinModelPortal:Q5B1Y9 SMR:Q5B1Y9
STRING:Q5B1Y9 EnsemblFungi:CADANIAT00003648 GeneID:2871718
KEGG:ani:AN5441.2 Uniprot:Q5B1Y9
Length = 155
Score = 84 (34.6 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ + I+ LT + G+GR + +C+ + K+ +L ELE++
Sbjct: 16 RLLNTNVDGKEKIMYALTQVKGVGRRYSNLVCKKADVDLNKRAGELTTEELERI 69
Score = 72 (30.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 64 IIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNAR 107
++ L ++ +++RL + +RG+RH L RGQ T+T R
Sbjct: 100 VLSNGLDSKYREDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGR 143
>UNIPROTKB|Q5B1Y9 [details] [associations]
symbol:AN5441.2 "Ribosomal protein S13p/S18e
(AFU_orthologue; AFUA_6G13550)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
EMBL:BN001305 GO:GO:0003735 EMBL:AACD01000094 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 OrthoDB:EOG437VQ7 RefSeq:XP_663045.1
ProteinModelPortal:Q5B1Y9 SMR:Q5B1Y9 STRING:Q5B1Y9
EnsemblFungi:CADANIAT00003648 GeneID:2871718 KEGG:ani:AN5441.2
Uniprot:Q5B1Y9
Length = 155
Score = 84 (34.6 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ + I+ LT + G+GR + +C+ + K+ +L ELE++
Sbjct: 16 RLLNTNVDGKEKIMYALTQVKGVGRRYSNLVCKKADVDLNKRAGELTTEELERI 69
Score = 72 (30.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 64 IIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNAR 107
++ L ++ +++RL + +RG+RH L RGQ T+T R
Sbjct: 100 VLSNGLDSKYREDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGR 143
>WB|WBGene00004487 [details] [associations]
symbol:rps-18 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006898 GO:GO:0006412
EMBL:Z99281 GO:GO:0000003 GO:GO:0042254 GO:GO:0003723 GO:GO:0003735
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871
OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964
GeneTree:ENSGT00390000012691 PIR:T27228 RefSeq:NP_502794.1
ProteinModelPortal:O18240 SMR:O18240 DIP:DIP-25985N
MINT:MINT-1089736 STRING:O18240 PaxDb:O18240
EnsemblMetazoa:Y57G11C.16.1 EnsemblMetazoa:Y57G11C.16.2
GeneID:178408 KEGG:cel:CELE_Y57G11C.16 UCSC:Y57G11C.16.1 CTD:178408
WormBase:Y57G11C.16 InParanoid:O18240 NextBio:901012 Uniprot:O18240
Length = 154
Score = 83 (34.3 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ NI N+ + LTAI G+GR A C + K+ +L + + +K+
Sbjct: 14 RVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKI 67
Score = 69 (29.3 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 46 KDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTN 105
KD+ D + +L +S ++ LR + ++R+ + +RG+RH L RGQ T+T
Sbjct: 88 KDIKDGKTGQL---LST-AVDNKLRED----LERMKKIRLHRGLRHYWGLRVRGQHTKTT 139
Query: 106 ARTRKGPRRAAQSLRK 121
R KG R S +K
Sbjct: 140 GR--KG-RTVGVSKKK 152
>UNIPROTKB|O18240 [details] [associations]
symbol:rps-18 "Protein RPS-18" species:6239 "Caenorhabditis
elegans" [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006898 GO:GO:0006412 EMBL:Z99281 GO:GO:0000003
GO:GO:0042254 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 GeneTree:ENSGT00390000012691
PIR:T27228 RefSeq:NP_502794.1 ProteinModelPortal:O18240 SMR:O18240
DIP:DIP-25985N MINT:MINT-1089736 STRING:O18240 PaxDb:O18240
EnsemblMetazoa:Y57G11C.16.1 EnsemblMetazoa:Y57G11C.16.2
GeneID:178408 KEGG:cel:CELE_Y57G11C.16 UCSC:Y57G11C.16.1 CTD:178408
WormBase:Y57G11C.16 InParanoid:O18240 NextBio:901012 Uniprot:O18240
Length = 154
Score = 83 (34.3 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ NI N+ + LTAI G+GR A C + K+ +L + + +K+
Sbjct: 14 RVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKI 67
Score = 69 (29.3 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 46 KDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTN 105
KD+ D + +L +S ++ LR + ++R+ + +RG+RH L RGQ T+T
Sbjct: 88 KDIKDGKTGQL---LST-AVDNKLRED----LERMKKIRLHRGLRHYWGLRVRGQHTKTT 139
Query: 106 ARTRKGPRRAAQSLRK 121
R KG R S +K
Sbjct: 140 GR--KG-RTVGVSKKK 152
>UNIPROTKB|A8HVP2 [details] [associations]
symbol:RPS18 "Ribosomal protein S18" species:3055
"Chlamydomonas reinhardtii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0005886 GO:GO:0005618
GO:GO:0005773 GO:GO:0005730 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 GO:GO:0022626 EMBL:DS496110
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871 KO:K02964
ProtClustDB:CLSN2681852 RefSeq:XP_001696472.1 UniGene:Cre.8169
ProteinModelPortal:A8HVP2 SMR:A8HVP2 STRING:A8HVP2 PRIDE:A8HVP2
EnsemblPlants:EDP08449 GeneID:5721802 KEGG:cre:CHLREDRAFT_155649
Uniprot:A8HVP2
Length = 153
Score = 83 (34.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ I+ +TAI GIGR + +C+ ++ K+ + + +ELE++
Sbjct: 15 RLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGECSADELERM 68
Score = 67 (28.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 76 NIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRK 110
+++RL + +RG+RH L RGQ T+T R K
Sbjct: 111 DLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRAGK 145
>UNIPROTKB|G4MNZ8 [details] [associations]
symbol:MGG_05661 "40S ribosomal protein S18" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:CM001231 GO:GO:0043581 SUPFAM:SSF46946
PANTHER:PTHR10871 KO:K02964 RefSeq:XP_003710559.1
ProteinModelPortal:G4MNZ8 SMR:G4MNZ8 EnsemblFungi:MGG_05661T0
GeneID:2676017 KEGG:mgr:MGG_05661 Uniprot:G4MNZ8
Length = 156
Score = 80 (33.2 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q I+ LT I G+GR + + + + K+ +L ELE++
Sbjct: 16 RLLNTNVDGKQKIVYALTKIKGVGRRYSNLVVKKADVDLNKRAGELTSEELERV 69
Score = 67 (28.6 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 76 NIKRLIDLSCYRGIRHRKSLPCRGQRTRTNAR 107
+++RL + +RG+RH L RGQ T+T R
Sbjct: 112 DLERLKKIRAHRGLRHYWGLRVRGQHTKTTGR 143
>FB|FBgn0010411 [details] [associations]
symbol:RpS18 "Ribosomal protein S18" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IBA;NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;NAS] [GO:0006412 "translation"
evidence=ISS;IBA;NAS] [GO:0006413 "translational initiation"
evidence=NAS] [GO:0005840 "ribosome" evidence=NAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:AE013599 GO:GO:0005829 GO:GO:0005811 GO:GO:0006412
GO:GO:0042254 GO:GO:0003735 GO:GO:0019843 GO:GO:0000022
ChiTaRS:RPS18 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI KO:K02964
GeneTree:ENSGT00390000012691 CTD:6222 EMBL:L22959 EMBL:AY118434
EMBL:BT024929 RefSeq:NP_476964.1 RefSeq:NP_725943.1
UniGene:Dm.20558 ProteinModelPortal:P41094 SMR:P41094
DIP:DIP-21027N STRING:P41094 PaxDb:P41094 PRIDE:P41094
EnsemblMetazoa:FBtr0086273 EnsemblMetazoa:FBtr0086274 GeneID:37292
KEGG:dme:Dmel_CG8900 FlyBase:FBgn0010411 InParanoid:P41094
OrthoDB:EOG49GJ00 PhylomeDB:P41094 GenomeRNAi:37292 NextBio:802956
Bgee:P41094 GermOnline:CG8900 Uniprot:P41094
Length = 152
Score = 78 (32.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61
RI+ NI + + I +TAI G+GR + + + + TK+ + + E++K+ IS
Sbjct: 14 RIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIIS 72
Score = 66 (28.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 76 NIKRLIDLSCYRGIRHRKSLPCRGQRTRTNAR 107
+++RL + +RG+RH L RGQ T+T R
Sbjct: 110 DLERLKKIRSHRGLRHYWGLRVRGQHTKTTGR 141
>GENEDB_PFALCIPARUM|PF11_0272 [details] [associations]
symbol:PF11_0272 "ribosomal protein S18,
putative" species:5833 "Plasmodium falciparum" [GO:0015935 "small
ribosomal subunit" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:AE014186
SUPFAM:SSF46946 PANTHER:PTHR10871 OMA:FQHILRI HOGENOM:HOG000039877
KO:K02964 ProtClustDB:PTZ00134 RefSeq:XP_001347943.1
ProteinModelPortal:Q8IIA2 SMR:Q8IIA2 IntAct:Q8IIA2
MINT:MINT-1584243 PRIDE:Q8IIA2 EnsemblProtists:PF11_0272:mRNA
GeneID:810819 KEGG:pfa:PF11_0272 EuPathDB:PlasmoDB:PF3D7_1126200
Uniprot:Q8IIA2
Length = 156
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
RI+ N+ + +II LTAI GIG+ A IC+ + TK+ +L E++ +
Sbjct: 16 RILNTNVDGKEKVIIALTAIKGIGKRMATVICKQANVDPTKRAGELTTEEIDNI 69
>UNIPROTKB|Q756F0 [details] [associations]
symbol:AER315C "AER315Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
GO:GO:0003735 EMBL:AE016818 GenomeReviews:AE016818_GR
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 OrthoDB:EOG437VQ7 RefSeq:NP_985171.1
ProteinModelPortal:Q756F0 SMR:Q756F0 STRING:Q756F0
EnsemblFungi:AAS52995 GeneID:4621384 KEGG:ago:AGOS_AER315C
PhylomeDB:Q756F0 Uniprot:Q756F0
Length = 146
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ N I+ LT I G+GR A IC+ + K+ +L ELE++
Sbjct: 16 RLLNTNVDGNIKIVYALTTIRGVGRRYANLICKKADVDLNKRAGELTQEELERV 69
>UNIPROTKB|Q8TRR2 [details] [associations]
symbol:rps13 "30S ribosomal protein S13" species:188937
"Methanosarcina acetivorans C2A" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019977 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AE010299 GenomeReviews:AE010299_GR SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 HAMAP:MF_01315
PANTHER:PTHR10871 RefSeq:NP_616052.1 ProteinModelPortal:Q8TRR2
GeneID:1472997 KEGG:mac:MA1108 OMA:FQHILRI ProtClustDB:PRK04053
BioCyc:MACE188937:GI2O-1171-MONOMER TIGRFAMs:TIGR03629
Uniprot:Q8TRR2
Length = 162
Score = 93 (37.8 bits), Expect = 0.00011, P = 0.00011
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 35 EVTKISTT-KKIKDLNDNELEKLREEIS----KFIIEGDLRREFSMNIKRLIDLSCYRGI 89
EV K+ T K +D+ + + +++++ K ++ D+ F +I L + YRG+
Sbjct: 74 EVAKLDTAIGKFEDIVPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGL 133
Query: 90 RHRKSLPCRGQRTRTNAR 107
RH + L RGQRT++ R
Sbjct: 134 RHERGLKVRGQRTKSTGR 151
>UNIPROTKB|Q7R7S0 [details] [associations]
symbol:PY07508 "Ribosomal protein S13/S18" species:73239
"Plasmodium yoelii yoelii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 PANTHER:PTHR10871 KO:K02964 EMBL:AABL01002777
RefSeq:XP_728420.1 ProteinModelPortal:Q7R7S0 SMR:Q7R7S0
STRING:Q7R7S0 GeneID:3800630 KEGG:pyo:PY07508
EuPathDB:PlasmoDB:PY07508 Uniprot:Q7R7S0
Length = 156
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
RI+ N+ + + I LTAI GIG+ A IC+ + TK+ +L E+ +
Sbjct: 16 RILNTNVDGKEKVTIALTAIKGIGKRIANVICKQANVDPTKRAGELTTEEINNI 69
>UNIPROTKB|Q8H588 [details] [associations]
symbol:OJ1656_E11.108 "Putative ribosomal protein S18"
species:39947 "Oryza sativa Japonica Group" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0005886 GO:GO:0005618
GO:GO:0005773 GO:GO:0005730 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 EMBL:CM000144 GO:GO:0022627
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871 EMBL:AP003843
EMBL:AP004670 STRING:Q8H588 Uniprot:Q8H588
Length = 148
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q I+ LT+I GIGR + C+ I K+ +L ELE+L
Sbjct: 10 RLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELERL 63
>UNIPROTKB|Q8H590 [details] [associations]
symbol:OJ1656_E11.104 "Putative ribosomal protein S18A"
species:39947 "Oryza sativa Japonica Group" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0005886 GO:GO:0005618
GO:GO:0005773 GO:GO:0005730 GO:GO:0006412 GO:GO:0042254
EMBL:DP000009 EMBL:AP008209 GO:GO:0003723 GO:GO:0003735
EMBL:AP008213 EMBL:CM000144 GO:GO:0022627 SUPFAM:SSF46946
GO:GO:0015935 PANTHER:PTHR10871 KO:K02964 OMA:IKYIVRI
ProtClustDB:CLSN2681852 EMBL:AP003843 EMBL:AP004670 EMBL:AC090871
EMBL:AC092076 EMBL:AK058881 EMBL:AK059548 RefSeq:NP_001051541.1
RefSeq:NP_001059007.2 UniGene:Os.13842 UniGene:Os.88187
STRING:Q8H590 EnsemblPlants:LOC_Os03g58050.1
EnsemblPlants:LOC_Os07g07709.1 GeneID:4334407 GeneID:4342526
KEGG:osa:4334407 KEGG:osa:4342526 Uniprot:Q8H590
Length = 152
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q I+ LT+I G+GR + C+ I K+ +L ELE+L
Sbjct: 14 RLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRAGELTPEELERL 67
>SGD|S000002858 [details] [associations]
symbol:RPS18A "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=NAS;IBA] [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0006407 "rRNA export from nucleus" evidence=IGI]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;NAS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 SGD:S000002858 EMBL:U33007 GO:GO:0005739
EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 GO:GO:0019843
GO:GO:0000447 PDB:1S1H PDBsum:1S1H GO:GO:0022627 SUPFAM:SSF46946
PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G PDBsum:3IZB
PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G GO:GO:0006407
HAMAP:MF_01315 PANTHER:PTHR10871 PDB:1K5X PDBsum:1K5X PIR:S50886
RefSeq:NP_010738.1 RefSeq:NP_013686.1 ProteinModelPortal:P0CX55
SMR:P0CX55 EnsemblFungi:YDR450W EnsemblFungi:YML026C GeneID:852061
GeneID:854982 KEGG:sce:YDR450W KEGG:sce:YML026C KO:K02964
EvolutionaryTrace:P0CX55 NextBio:970337 ArrayExpress:P0CX55
GermOnline:YDR450W Uniprot:P0CX55
Length = 146
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ N I+ LT I G+GR + +C+ + K+ +L ELE++
Sbjct: 16 RLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERI 69
>SGD|S000004488 [details] [associations]
symbol:RPS18B "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0006407 "rRNA
export from nucleus" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=NAS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;NAS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=IBA;NAS] [GO:0005622
"intracellular" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 SGD:S000004488
GO:GO:0005739 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181 EMBL:Z46659
GO:GO:0019843 GO:GO:0000447 GO:GO:0022627 SUPFAM:SSF46946
GO:GO:0006407 HAMAP:MF_01315 PANTHER:PTHR10871 PIR:S50886
RefSeq:NP_010738.1 RefSeq:NP_013686.1 EnsemblFungi:YDR450W
EnsemblFungi:YML026C GeneID:852061 GeneID:854982 KEGG:sce:YDR450W
KEGG:sce:YML026C KO:K02964 NextBio:970337 EMBL:X62392
ProteinModelPortal:P0CX56 SMR:P0CX56 GeneTree:ENSGT00390000012691
ArrayExpress:P0CX56 GermOnline:YML026C Uniprot:P0CX56
Length = 146
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ N I+ LT I G+GR + +C+ + K+ +L ELE++
Sbjct: 16 RLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERI 69
>TAIR|locus:2199670 [details] [associations]
symbol:PFL "POINTED FIRST LEAVES" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006413 "translational initiation" evidence=TAS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506
GO:GO:0005774 GO:GO:0005618 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006413 GO:GO:0042254 GO:GO:0003735
GO:GO:0019843 EMBL:AL161515 EMBL:AL049482 GO:GO:0022627
SUPFAM:SSF46946 EMBL:AC003979 EMBL:Y12227 EMBL:AC015446
EMBL:AC079286 eggNOG:COG0099 PANTHER:PTHR10871 HOGENOM:HOG000039877
KO:K02964 EMBL:Z23165 EMBL:Z28701 EMBL:Z28702 EMBL:Z28962
EMBL:AF411781 EMBL:AF386941 EMBL:AF370463 EMBL:AY034965
EMBL:AY064680 EMBL:AY070029 EMBL:AY086334 EMBL:AY086800
EMBL:BT006539 EMBL:AY087428 IPI:IPI00532609 PIR:S46223
RefSeq:NP_173692.1 RefSeq:NP_192718.1 RefSeq:NP_564434.1
UniGene:At.179 UniGene:At.180 UniGene:At.20392 UniGene:At.33672
ProteinModelPortal:P34788 SMR:P34788 IntAct:P34788 STRING:P34788
PaxDb:P34788 PRIDE:P34788 EnsemblPlants:AT1G22780.1
EnsemblPlants:AT1G34030.1 EnsemblPlants:AT4G09800.1 GeneID:826569
GeneID:838884 GeneID:840300 KEGG:ath:AT1G22780 KEGG:ath:AT1G34030
KEGG:ath:AT4G09800 GeneFarm:799 GeneFarm:800 GeneFarm:802
TAIR:At1g22780 TAIR:At1g34030 TAIR:At4g09800 InParanoid:P34788
OMA:IKYIVRI PhylomeDB:P34788 ProtClustDB:CLSN2681852
Genevestigator:P34788 GermOnline:AT1G22780 Uniprot:P34788
Length = 152
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q I+ LT+I GIGR A +C+ + K+ +L+ E++ L
Sbjct: 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNL 67
>TAIR|locus:2009066 [details] [associations]
symbol:AT1G34030 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0022626 "cytosolic
ribosome" evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005774
GO:GO:0005618 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730
GO:GO:0006413 GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AL161515 EMBL:AL049482 GO:GO:0022627 SUPFAM:SSF46946
EMBL:AC003979 EMBL:Y12227 EMBL:AC015446 EMBL:AC079286
eggNOG:COG0099 PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964
EMBL:Z23165 EMBL:Z28701 EMBL:Z28702 EMBL:Z28962 EMBL:AF411781
EMBL:AF386941 EMBL:AF370463 EMBL:AY034965 EMBL:AY064680
EMBL:AY070029 EMBL:AY086334 EMBL:AY086800 EMBL:BT006539
EMBL:AY087428 IPI:IPI00532609 PIR:S46223 RefSeq:NP_173692.1
RefSeq:NP_192718.1 RefSeq:NP_564434.1 UniGene:At.179 UniGene:At.180
UniGene:At.20392 UniGene:At.33672 ProteinModelPortal:P34788
SMR:P34788 IntAct:P34788 STRING:P34788 PaxDb:P34788 PRIDE:P34788
EnsemblPlants:AT1G22780.1 EnsemblPlants:AT1G34030.1
EnsemblPlants:AT4G09800.1 GeneID:826569 GeneID:838884 GeneID:840300
KEGG:ath:AT1G22780 KEGG:ath:AT1G34030 KEGG:ath:AT4G09800
GeneFarm:799 GeneFarm:800 GeneFarm:802 TAIR:At1g22780
TAIR:At1g34030 TAIR:At4g09800 InParanoid:P34788 OMA:IKYIVRI
PhylomeDB:P34788 ProtClustDB:CLSN2681852 Genevestigator:P34788
GermOnline:AT1G22780 Uniprot:P34788
Length = 152
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q I+ LT+I GIGR A +C+ + K+ +L+ E++ L
Sbjct: 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNL 67
>TAIR|locus:2005541 [details] [associations]
symbol:RPS18C "S18 ribosomal protein" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS;TAS] [GO:0015935 "small ribosomal subunit"
evidence=ISS;TAS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005773 "vacuole"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 GO:GO:0009506 GO:GO:0005774 GO:GO:0005618
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0006413
GO:GO:0042254 GO:GO:0003735 GO:GO:0019843 EMBL:AL161515
EMBL:AL049482 GO:GO:0022627 SUPFAM:SSF46946 EMBL:AC003979
EMBL:Y12227 EMBL:AC015446 EMBL:AC079286 eggNOG:COG0099
PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964 EMBL:Z23165
EMBL:Z28701 EMBL:Z28702 EMBL:Z28962 EMBL:AF411781 EMBL:AF386941
EMBL:AF370463 EMBL:AY034965 EMBL:AY064680 EMBL:AY070029
EMBL:AY086334 EMBL:AY086800 EMBL:BT006539 EMBL:AY087428
IPI:IPI00532609 PIR:S46223 RefSeq:NP_173692.1 RefSeq:NP_192718.1
RefSeq:NP_564434.1 UniGene:At.179 UniGene:At.180 UniGene:At.20392
UniGene:At.33672 ProteinModelPortal:P34788 SMR:P34788 IntAct:P34788
STRING:P34788 PaxDb:P34788 PRIDE:P34788 EnsemblPlants:AT1G22780.1
EnsemblPlants:AT1G34030.1 EnsemblPlants:AT4G09800.1 GeneID:826569
GeneID:838884 GeneID:840300 KEGG:ath:AT1G22780 KEGG:ath:AT1G34030
KEGG:ath:AT4G09800 GeneFarm:799 GeneFarm:800 GeneFarm:802
TAIR:At1g22780 TAIR:At1g34030 TAIR:At4g09800 InParanoid:P34788
OMA:IKYIVRI PhylomeDB:P34788 ProtClustDB:CLSN2681852
Genevestigator:P34788 GermOnline:AT1G22780 Uniprot:P34788
Length = 152
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
R++ N+ Q I+ LT+I GIGR A +C+ + K+ +L+ E++ L
Sbjct: 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNL 67
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 121 121 0.00091 102 3 11 22 0.46 30
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 64
No. of states in DFA: 516 (55 KB)
Total size of DFA: 104 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.31u 0.08s 16.39t Elapsed: 00:00:06
Total cpu time: 16.32u 0.08s 16.40t Elapsed: 00:00:06
Start: Thu Aug 15 11:16:28 2013 End: Thu Aug 15 11:16:34 2013