RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8858
(121 letters)
>gnl|CDD|235358 PRK05179, rpsM, 30S ribosomal protein S13; Validated.
Length = 122
Score = 196 bits (500), Expect = 2e-66
Identities = 73/122 (59%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G++IP N+ ++I LT IYGIGR+RAK+I I ++KDL D EL+K+REEI
Sbjct: 1 MARIAGVDIPRNKRVVIALTYIYGIGRTRAKEILAAAGIDPDTRVKDLTDEELDKIREEI 60
Query: 61 SK-FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSL 119
K + +EGDLRRE SMNIKRL+D+ CYRG+RHR+ LP RGQRT+TNARTRKGPR+
Sbjct: 61 DKNYKVEGDLRREVSMNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKTIAGK 120
Query: 120 RK 121
+K
Sbjct: 121 KK 122
>gnl|CDD|213840 TIGR03631, bact_S13, 30S ribosomal protein S13. This model
describes bacterial ribosomal protein S13, to the
exclusion of the homologous archaeal S13P and eukaryotic
ribosomal protein S18. This model identifies some (but
not all) instances of chloroplast and mitochondrial S13,
which is of bacterial type [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 113
Score = 180 bits (459), Expect = 2e-60
Identities = 71/113 (62%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI-S 61
RI G++IPNN+ + I LT IYGIGR+RA+KI E I K++KDL + EL +REEI +
Sbjct: 1 RIAGVDIPNNKRVEIALTYIYGIGRTRARKILEKAGIDPDKRVKDLTEEELNAIREEIEA 60
Query: 62 KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
K+ +EGDLRRE S+NIKRL+D+ CYRG+RHR+ LP RGQRT+TNARTRKGPR+
Sbjct: 61 KYKVEGDLRREVSLNIKRLMDIGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 113
>gnl|CDD|223177 COG0099, RpsM, Ribosomal protein S13 [Translation, ribosomal
structure and biogenesis].
Length = 121
Score = 159 bits (405), Expect = 4e-52
Identities = 67/117 (57%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G++IP N+ ++I LT IYGIGR RAK+IC+ I K++ +L + E+E+LR+ I
Sbjct: 1 MARIAGVDIPGNKRVVIALTYIYGIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAI 60
Query: 61 -SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAA 116
+K+++EGDLRRE M+IKRL+ + CYRGIRHR+ LP RGQRT+TNARTRKGPR+
Sbjct: 61 QNKYLVEGDLRREVRMDIKRLMKIGCYRGIRHRRGLPVRGQRTKTNARTRKGPRKGV 117
>gnl|CDD|177059 CHL00137, rps13, ribosomal protein S13; Validated.
Length = 122
Score = 132 bits (335), Expect = 2e-41
Identities = 61/115 (53%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
M RI G+++P N+ I LT IYGIG + AK+I E I + KDL D ++ LRE I
Sbjct: 1 MVRIAGVDLPRNKRIEYALTYIYGIGLTSAKEILEKANIDPDIRTKDLTDEQISALREII 60
Query: 61 -SKFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
+ +EGDLRR S+NIKRL++++CYRG RHR LP RGQRTRTNARTR+G ++
Sbjct: 61 EENYQVEGDLRRFESLNIKRLMEINCYRGRRHRLGLPVRGQRTRTNARTRRGAKK 115
>gnl|CDD|144128 pfam00416, Ribosomal_S13, Ribosomal protein S13/S18. This family
includes ribosomal protein S13 from prokaryotes and S18
from eukaryotes.
Length = 106
Score = 120 bits (303), Expect = 9e-37
Identities = 47/106 (44%), Positives = 73/106 (68%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
RI+ N+ N+ I I LT I GIGR +A +I + + K++ +L + E++++R+ IS
Sbjct: 1 RILNTNLDGNKKIEIALTYIKGIGRRKANQILKKAGVDKDKRVGELTEEEIDRIRDIISN 60
Query: 63 FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNART 108
+++E DLRR+ +I+RL + CYRG+RH + LP RGQRT+TNART
Sbjct: 61 YVVENDLRRKIRNDIERLKKIRCYRGLRHIRGLPVRGQRTKTNART 106
>gnl|CDD|235215 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed.
Length = 149
Score = 79.9 bits (198), Expect = 2e-20
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS- 61
RI G ++ + + LT I GIGR A+ I + K+ L+D E+EK+ E +
Sbjct: 11 RIAGTDLDGTKPVEYALTGIKGIGRRTARAIARKLGLDPNAKLGYLSDEEIEKIEEALED 70
Query: 62 ----------------------KFIIEGDL---RREFSMNIKRLIDLSCYRGIRHRKSLP 96
+I DL RE +I R+ + YRGIRH L
Sbjct: 71 PAEEGIPSWMLNRRKDYETGEDLHLIGSDLILTVRE---DINRMKKIRSYRGIRHELGLK 127
Query: 97 CRGQRTRTNART 108
RGQRTR+ RT
Sbjct: 128 VRGQRTRSTGRT 139
>gnl|CDD|213839 TIGR03629, arch_S13P, archaeal ribosomal protein S13P. This model
describes exclusively the archaeal ribosomal protein
S13P. It excludes the homologous eukaryotic 40S
ribosomal protein S18 and bacterial 30S ribosomal
protein S13 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 144
Score = 77.7 bits (192), Expect = 1e-19
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
+ RI ++ N+ + LT I GIGR A+ I + K+ L+D E+EKL E +
Sbjct: 5 IVRIADTDLDGNKPVEYALTGIKGIGRRFARAIARKLGVDPNAKLGYLDDEEIEKLEEAV 64
Query: 61 SKF----------------------IIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCR 98
+ +I DL +I R+ + YRGIRH L R
Sbjct: 65 ENYEYGIPSWLLNRRKDYETGEDLHLIGSDLDMTVREDINRMKKIRSYRGIRHELGLKVR 124
Query: 99 GQRTRTNART 108
GQRT++ R
Sbjct: 125 GQRTKSTGRR 134
>gnl|CDD|185469 PTZ00134, PTZ00134, 40S ribosomal protein S18; Provisional.
Length = 154
Score = 51.6 bits (124), Expect = 3e-09
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 1 MTRIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEI 60
+ RI+ N+ + + LTAI GIGR A +C+ I TK+ +L E+EK+ E I
Sbjct: 14 ILRILNTNVDGKRKVPYALTAIKGIGRRFAYLVCKKAGIDVTKRAGELTAEEIEKIVEII 73
Query: 61 S-----------------------KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPC 97
+ + L + +++RL + +RG+RH L
Sbjct: 74 ANPLQFKIPDWFLNRQRDPKDGKNSHLTSNMLDTKLREDLERLKKIRLHRGLRHHWGLRV 133
Query: 98 RGQRTRTNAR 107
RGQ T+T R
Sbjct: 134 RGQHTKTTGR 143
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 32.9 bits (76), Expect = 0.026
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 24 GIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKF 63
+G A +I E + KK K+L ELE+L E K+
Sbjct: 268 RVGDKTADEILEKAGLDPNKKPKELTREELERLVEAFKKY 307
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 31.2 bits (72), Expect = 0.11
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 38 KISTTKKIKDLNDNELEKLREEISKFIIE 66
I++ +K L++ EL +L +EI +F+I+
Sbjct: 9 TINSPADLKKLSEEELPQLADEIREFLID 37
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 38 KISTTKKIKDLNDNELEKLREEISKFIIE 66
KI++ +K L+ EL +L +EI +F++E
Sbjct: 7 KINSPADLKKLSIEELPQLADEIREFLLE 35
>gnl|CDD|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate
synthase. This family contains
1-deoxyxylulose-5-phosphate synthase (DXP synthase), an
enzyme which catalyzes the thiamine
pyrophosphoate-dependent acyloin condensation reaction
between carbon atoms 2 and 3 of pyruvate and
glyceraldehyde 3-phosphate, to yield 1-deoxy-D-
xylulose-5-phosphate, a precursor in the biosynthetic
pathway to isoprenoids, thiamine (vitamin B1), and
pyridoxol (vitamin B6).
Length = 272
Score = 30.8 bits (71), Expect = 0.12
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 38 KISTTKKIKDLNDNELEKLREEISKFIIE 66
KI++ +K L++ EL +L +EI +F+IE
Sbjct: 3 KINSPADLKKLSEEELPQLADEIREFLIE 31
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 28.8 bits (65), Expect = 0.61
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 16 IIGLTAIYGIGRSRAKKICEVTKISTT----KKIKDLNDNELEKLREE 59
I+ L Y +G AKK+ E I T K I L++ LEKL+E+
Sbjct: 465 ILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLKED 512
Score = 28.8 bits (65), Expect = 0.67
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 38 KISTTKKIKDLNDNELEKLREEISKFIIEGD 68
KI++ +K L+ +ELE+L EI ++E D
Sbjct: 5 KINSPADLKKLSLDELEQLASEIRTALLEKD 35
>gnl|CDD|173133 PRK14670, uvrC, excinuclease ABC subunit C; Provisional.
Length = 574
Score = 28.0 bits (62), Expect = 1.3
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 6 GINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELE-------KLRE 58
G N ++I + T I GIG +AKKI + + T K I LN++E+ K+ +
Sbjct: 503 GFNKKLRENIKLNYTKIKGIGEKKAKKILKS--LGTYKDILLLNEDEIAEKMKINIKMAK 560
Query: 59 EISKFIIEGDLRR 71
+I KF + +L
Sbjct: 561 KIKKFAEKQNLIN 573
>gnl|CDD|184410 PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase;
Provisional.
Length = 282
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 39 ISTTKKIKDLNDNELEKLREEI 60
I T L +LE+LRE I
Sbjct: 194 IHPTTPAGQLKKKQLERLREAI 215
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423). This
family represents a conserved region approximately 500
residues long within a number of Arabidopsis thaliana
proteins of unknown function.
Length = 446
Score = 27.8 bits (62), Expect = 1.5
Identities = 9/43 (20%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 40 STTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLID 82
+++ ++ D LE+L+E + I+EG +R+ + +++ +
Sbjct: 7 VVAERMHEMPDEYLEELKEALRG-ILEGAQKRDELVFLQKAVQ 48
>gnl|CDD|113545 pfam04778, LMP, LMP repeated region. This family consists of a
repeated sequence element found in the LMP group of
surface-located membrane proteins of Mycoplasma
hominis. The the number of repeats in the protein
affects the tendency of cells to spontaneously
aggregate. Agglutination may be an important factor in
colonisation. Non-agglutinating microorganisms might
easily be distributed whereas aggregation might provide
a better chance to avoid an antibody response since
some of the epitopes may be buried.
Length = 157
Score = 27.2 bits (60), Expect = 1.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 32 KICEVTKISTT-KKIKDLNDNELEKLREEISKFI 64
K+ E+TK T K KD ELE+ R++I +FI
Sbjct: 52 KVTEITKKLETFNKDKDAKFKELEQTRKDIDEFI 85
>gnl|CDD|177642 PHA03414, PHA03414, virion protein; Provisional.
Length = 1337
Score = 27.8 bits (61), Expect = 1.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 20 TAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEIS 61
T YG GR E+ T +++DL D +L++L E +
Sbjct: 861 TVKYGKGRLSLDMTAEINHNGTVYRVQDLIDRDLDRLMENYA 902
>gnl|CDD|221608 pfam12501, DUF3708, Phosphate ATP-binding cassette transporter.
This domain family is found in bacteria, and is
typically between 143 and 173 amino acids in length.
The family is found in association with pfam00528.
There is a single completely conserved residue P that
may be functionally important.
Length = 127
Score = 26.8 bits (60), Expect = 2.2
Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 15 IIIGLTAI-YGIGRSRAKKI 33
+++ L+AI + +GR RA +
Sbjct: 4 LLLLLSAIGFLLGRRRALAL 23
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
Length = 737
Score = 27.2 bits (61), Expect = 2.4
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 17 IGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEK-LREEISKFIIEGDLRREFSM 75
+ L + G+GR RA+++ I + ++ + + + L E+I++ I+E RR+ SM
Sbjct: 652 LDLVGLRGVGRVRARRLYN-AGIESRADLRAADKSVVLAILGEKIAENILEQAGRRDPSM 710
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 27.2 bits (61), Expect = 2.4
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 47 DLNDNELEKLREEISKFII--EGDLRREFSMNIKR-LIDLSCYRGIRHR 92
D++ ELE LR ++ I EG L + S +KR L L G+ HR
Sbjct: 475 DISKEELEALRNALAGGGILEEGVLVLDLSEGVKRILEKL----GVPHR 519
>gnl|CDD|198306 cd03197, GST_C_mPGES2, C-terminal, alpha helical domain of
microsomal Prostaglandin E synthase Type 2. Glutathione
S-transferase (GST) C-terminal domain family, microsomal
Prostaglandin E synthase Type 2 (mPGES2) subfamily;
mPGES2 is a membrane-anchored dimeric protein containing
a CXXC motif which catalyzes the isomerization of PGH2
to PGE2. Unlike cytosolic PGE synthase (cPGES) and
microsomal PGES Type 1 (mPGES1), mPGES2 does not require
glutathione (GSH) for its activity, although its
catalytic rate is increased two- to four-fold in the
presence of DTT, GSH, or other thiol compounds. PGE2 is
widely distributed in various tissues and is implicated
in the sleep/wake cycle, relaxation/contraction of
smooth muscle, excretion of sodium ions, maintenance of
body temperature, and mediation of inflammation. mPGES2
contains an N-terminal hydrophobic domain which is
membrane associated and a C-terminal soluble domain with
a GST-like structure. The C-terminal GST-like domain
contains two structural domains, an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain. The GST active site is located in a cleft
between the two structural domains.
Length = 149
Score = 26.8 bits (60), Expect = 2.6
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 17 IGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMN 76
+G A+Y I + KK +++ D+ E L + ++ ++ +R+F
Sbjct: 58 VGAAAMYLISKRLKKK-------------RNIKDDVRESLYDALNDWVKALGKKRKF-HG 103
Query: 77 IKR--LIDLSCY 86
+ L DL+ Y
Sbjct: 104 GSKPNLADLAVY 115
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 27.0 bits (60), Expect = 3.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 29 RAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIE 66
K + +I ++ L+D ELE+L +E+ +I
Sbjct: 2 PRPKTPLLDRIKGPADLRALSDAELEQLADELRAEVIS 39
>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A
(RAB escort protein) [Posttranslational modification,
protein turnover, chaperones].
Length = 434
Score = 26.7 bits (59), Expect = 3.3
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 20 TAIYGIGRSRAKKIC-EVTKISTTKKIKDLNDNE------LEKLREEISKFIIEGDLRRE 72
I G ++C E ++ I + E LE L + KF+ + +
Sbjct: 330 NDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDV-EEIYQ 388
Query: 73 FSMNIKRLIDLSCYRGIRHRKSLPC--RGQRTRTNAR 107
+ ++ H +SL +G R
Sbjct: 389 PDEDTNQVYLSDSVDESSHFESLTYEIKGIYKRFTGT 425
>gnl|CDD|147057 pfam04706, Dickkopf_N, Dickkopf N-terminal cysteine-rich region.
Dickkopf proteins are a class of Wnt antagonists. They
possess two conserved cysteine-rich regions. This family
represents the N-terminal one. The C-terminal region has
been found to share significant sequence similarity to
the colipase fold, pfam01114, pfam02740.
Length = 52
Score = 24.6 bits (54), Expect = 4.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 85 CYRGIRHRKSLPCRGQRTRTN 105
C+ LPCR +R R
Sbjct: 14 CHSPRDESVCLPCRKRRKRCT 34
>gnl|CDD|217526 pfam03385, DUF288, Protein of unknown function, DUF288.
Length = 390
Score = 26.3 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 25 IGRSRAKKICEVTKISTTKKIKD 47
G AKKI + KIST KI +
Sbjct: 332 YGMKAAKKILKTVKISTDPKIAE 354
>gnl|CDD|151372 pfam10925, DUF2680, Protein of unknown function (DUF2680).
Members in this family of proteins are annotated as
yckD however currently no function is known.
Length = 59
Score = 25.0 bits (55), Expect = 4.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 43 KKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLID 82
K+I+ L E ++ I K++ G + +E + +IK+ ID
Sbjct: 7 KEIEALYKQIAELRKQVIDKYVEAGVITKEQADHIKKNID 46
>gnl|CDD|107063 PHA01750, PHA01750, hypothetical protein.
Length = 75
Score = 24.9 bits (54), Expect = 6.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 45 IKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLID 82
+K++ ++EL+ L+ EI + I+ D IKR +D
Sbjct: 36 VKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73
>gnl|CDD|227655 COG5352, COG5352, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 25.3 bits (55), Expect = 8.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 91 HRKSLPCRGQRTRTNARTRK------GPRRAAQSLR 120
HR L R + T AR +K P RAAQS+R
Sbjct: 41 HRLGLSGRAKPTAAPARQKKTTSAPRAPVRAAQSVR 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.390
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,178,950
Number of extensions: 556452
Number of successful extensions: 992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 92
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)