RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8858
(121 letters)
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli
[TaxId: 562]}
Length = 114
Score = 137 bits (346), Expect = 6e-44
Identities = 66/112 (58%), Positives = 93/112 (83%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
RI GINIP+++H +I LT+IYG+G++R+K I I+ KI +L++ +++ LR+E++K
Sbjct: 2 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAK 61
Query: 63 FIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRR 114
F++EGDLRRE SM+IKRL+DL CYRG+RHR+ LP RGQRT+TNARTRKGPR+
Sbjct: 62 FVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 113
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 128 bits (322), Expect = 4e-40
Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 3 RIVGINIPNNQHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREE-IS 61
RI G+ IP N+ + + LT IYGIG++RAK+ E T I+ ++KDL + E+ +LRE +
Sbjct: 2 RIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 61
Query: 62 KFIIEGDLRREFSMNIKRLIDLSCYRGIRHRKSLPCRGQRTRTNARTRKGPRRAAQSLRK 121
+ +EG+LR E + NIKRL+D+ CYRG+RHR+ LP RGQRTRTNARTRKGPR+ +K
Sbjct: 62 TWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK 121
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle
domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Length = 78
Score = 32.1 bits (73), Expect = 0.003
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 24 GIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFI 64
IG + A KI E+ + KK+K+L + E+ +L E K+
Sbjct: 36 SIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYE 76
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 26.9 bits (60), Expect = 0.18
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 19 LTAIYGIGRSRAKKICE--VTKISTTKKIKDLNDN 51
+ I+G G A+ + + + L
Sbjct: 10 FSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQ 44
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl
transferase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 26.2 bits (58), Expect = 0.37
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 19 LTAIYGIGRSRAKKICE--VTKISTTKKIKDLNDNELEKL 56
T+++G+G A+K +S + K L +++K
Sbjct: 10 FTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKA 49
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 25.7 bits (57), Expect = 0.50
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 19 LTAIYGIGRSRAKKICE--VTKISTTKKIKD-LNDNELEKLR--EEISK 62
LT + GIG S A+K + + + +K +D LN ++ L+ + K
Sbjct: 9 LTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEK 57
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.9 bits (59), Expect = 0.63
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 15 IIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRRE 72
I + + A+ + +S K I E+ + + +K LN E+EK EI K E + +++
Sbjct: 187 IKLVIKALLEVVQSGGKNI-ELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.7 bits (54), Expect = 1.1
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLR--EEISKFIIEGDLRREFS 74
L + G+ + + + ++ L+ +EL + +K + + + F+
Sbjct: 5 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDF-IHTSFA 59
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome
bc1-complex, water-soluble domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 127
Score = 25.8 bits (56), Expect = 1.2
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 41 TTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLIDLSC----YRGIRHRKSLP 96
T K+I E+ +LR+ + E+ + I L C G P
Sbjct: 33 TKKEIDQEAAVEVSQLRDPQHDLERVK--KPEWVILIGVCTHLGCVPIANAGDFGGYYCP 90
Query: 97 CRGQRTRTNARTRKGP 112
C G + R RKGP
Sbjct: 91 CHGSHYDASGRIRKGP 106
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 24.7 bits (54), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 19 LTAIYGIGRSRAKKICE---VTKISTTKKIKDLNDNELEKLREEI 60
L A+ GIG A++I E ++ K+K + LE+LR +
Sbjct: 19 LMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPYL 63
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 25.4 bits (55), Expect = 1.7
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 8 NIPNNQHIIIGLTAIY-GIGRSRAKKICEVTKISTTKKIKDLNDNELEKL 56
N+P + + +G+ A+ + K E+ I+ K + + E++K
Sbjct: 171 NLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKF 220
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 198
Score = 25.2 bits (55), Expect = 2.1
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 16 IIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEG 67
++ L I IGR RA+K+ I + I + + I++ ++EG
Sbjct: 143 LLELVRIRHIGRVRARKLYNA-GIRNAEDIVRHREKVASLIGRGIAERVVEG 193
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 25.4 bits (55), Expect = 2.2
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 15 IIIGLTAIYGIGRSRAK-KICEVTKISTTKKIKDLNDNELEKLREEI 60
I L + + + E+ + + ELE++ ++I
Sbjct: 188 IKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 234
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 24.4 bits (53), Expect = 2.6
Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 19 LTAIYGIGRSRAKKICE-------VTKISTTKKIKDLNDNELEKLREE 59
L ++ IG +A+ I +++ ++++ + ++E +
Sbjct: 35 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKA 82
>d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021
{Enterococcus faecalis [TaxId: 1351]}
Length = 285
Score = 24.8 bits (53), Expect = 3.1
Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 41 TTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLIDLSCYRGIRH 91
TTK++K + E++++ ++ + + E ++L+ + G
Sbjct: 1 TTKRVKKMGKEEMKEMF-DLVIYAFNQEPTAERQERFEKLLSHTQSYGFLI 50
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 23.4 bits (51), Expect = 3.5
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
+ + G+G + A+K+ E T + I + EL+++ IS+
Sbjct: 3 IEDLPGVGPATAEKLRE-AGYDTLEAIAVASPIELKEV-AGISE 44
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen
(PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Length = 119
Score = 23.9 bits (52), Expect = 4.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 52 ELEKLREEISKFIIEGDLRREFSMNIKRLIDLSC 85
++ E+ K + G L R F++N I++
Sbjct: 88 IIDADSPEVVKLTLSGALNRVFNVN---NIEVLP 118
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 23.2 bits (50), Expect = 5.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREE 59
+ G+G A+KI E T K++ +LEK+R++
Sbjct: 50 AKKLPGVGTKIAEKIDE---FLATGKLR-----KLEKIRQD 82
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C
subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Length = 92
Score = 23.2 bits (50), Expect = 5.8
Identities = 5/30 (16%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 35 EVTKISTTKKIKDLNDNELEKLREEISKFI 64
EV I+ ++ ++ E E++ + +
Sbjct: 6 EVEHIANLARL-QISPEETEEMANTLESIL 34
>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Thermus thermophilus [TaxId: 274]}
Length = 242
Score = 23.8 bits (51), Expect = 6.4
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 11/53 (20%)
Query: 24 GIGRSRAKKI----CEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRRE 72
GIGR+ + + D+ + L + E + + D+
Sbjct: 16 GIGRATLELFAKEGARLV-------ACDIEEGPLREAAEAVGAHPVVMDVADP 61
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 23.8 bits (51), Expect = 7.2
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 13 QHIIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
+H + L + K + + + +D+++ E + +
Sbjct: 186 KHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE 235
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 23.5 bits (50), Expect = 8.0
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 15 IIIGLTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISK 62
+ + + ++ + ++ AK I E+T + I L+ E+ + +I +
Sbjct: 190 VKLTVRSLLEVVQTGAKNI-EITVVKPDSDIVALSSEEINQYVTQIEQ 236
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen
(PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 23.2 bits (50), Expect = 9.2
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 22 IYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIEGDLRREFSMNIKRLI 81
G+ KKI + K T +K +N L + I+G R F + LI
Sbjct: 67 TIGVNLDHLKKILKRGKAKDTLILKKGEENFL--------EITIQGTATRTFRVP---LI 115
Query: 82 DL 83
D+
Sbjct: 116 DV 117
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 22.4 bits (48), Expect = 9.8
Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 19 LTAIYGIGRSRAKKICEVTKISTTKKIKDLNDNELEKLREEISKFIIE 66
+ + + + A+++ + + +++ + EL K+ E I + I +
Sbjct: 12 VEGLPHVSATLARRLLKHFG--SVERVFTASVAELMKV-EGIGEKIAK 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.390
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 447,772
Number of extensions: 20651
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 50
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)