BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8859
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 83/109 (76%)
Query: 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 60
MP++++LPH LC DGA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF+
Sbjct: 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFD 60
Query: 61 EINKANEVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIPRYTINQVK 109
+ +++E E+DML+KAWGLE SRLSCQ + DL +EIPRYTIN +
Sbjct: 61 SLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAR 109
>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin
(Fdxb) From Pseudomonas Putida Jcm 20004
Length = 113
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 68/108 (62%)
Query: 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 60
MP V LPH C +G G ++ + + I +E AC AC TCH I+R+GF+
Sbjct: 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFD 60
Query: 61 EINKANEVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIPRYTINQV 108
+ +A+E+EEDML+KAWGLE SRL CQV + DLTIEIP+Y++N
Sbjct: 61 SLEEADELEEDMLDKAWGLEAQSRLGCQVFVADEDLTIEIPKYSLNHA 108
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 22 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIR-EGFNEINKANEVEEDMLNKAWGLE 80
N G S+ D N+I +E ACE S AC+TCHVI+ E + ++ E EEDML+ A+GLE
Sbjct: 21 NEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80
Query: 81 ENSRLSCQVIL 91
E SRL CQV+L
Sbjct: 81 ETSRLGCQVLL 91
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+GL
Sbjct: 27 GDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLT 86
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L S ++T+ +P
Sbjct: 87 DRSRLGCQICLTKSMDNMTVRVP 109
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+GL
Sbjct: 25 GDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLT 84
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L S ++T+ +P
Sbjct: 85 DRSRLGCQICLTKSMDNMTVRVP 107
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+GL
Sbjct: 25 GDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLT 84
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L S ++T+ +P
Sbjct: 85 DRSRLGCQICLTKSMDNMTVRVP 107
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 25 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 84
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 85 DRSRLGCQICLTKAMDNMTVRVP 107
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 26 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 86 DRSRLGCQICLTKAMDNMTVRVP 108
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 24 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREGFNE-INKANEVEEDMLNKAWGLEE 81
G ++ +A ++N+I +E C +CACATCHV + E + E + + +EEDML+ + +
Sbjct: 41 GATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDVRP 100
Query: 82 NSRLSCQV 89
NSRLSCQ+
Sbjct: 101 NSRLSCQI 108
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 26 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 86 DRSRLGCQICLTKAMDNMTVRVP 108
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 26 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 86 DRSRLGCQICLTKAMDNMTVRVP 108
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 23 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 82
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 83 DRSRLGCQICLTKAMDNMTVRVP 105
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 26 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT 85
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 86 DRSRLGCQICLTKAMDNMTVRVP 108
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 105
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+GL
Sbjct: 23 GDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDCAYGLT 82
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+ SRL CQ+ L + ++T+ +P
Sbjct: 83 DRSRLGCQISLTKAMDNMTVRVP 105
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 33 KNSIFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLEENSRLSCQVIL 91
++ + +E ACE S AC+TCHV + E + + E E+DML+ A L+ENSRL CQ++L
Sbjct: 34 RHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVL 93
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin
Reductase- Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin
Reductase- Putidaredoxin Complex
Length = 106
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LE 80
G+SL A + N I+ I C S +CATCHV + E F +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 81 ENSRLSCQVIL 91
NSRLSCQ+I+
Sbjct: 80 PNSRLSCQIIM 90
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LE 80
G+SL A + N I+ I C S +CATCHV + E F +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLECVTAELK 79
Query: 81 ENSRLSCQVIL 91
NSRLSCQ+I+
Sbjct: 80 PNSRLSCQIIM 90
>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
20,22- Dihydroxycholesterol
pdb|3NA0|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
20,22- Dihydroxycholesterol
Length = 68
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 26 SLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLEEN 82
SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+GL +
Sbjct: 1 SLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDR 60
Query: 83 SRLSCQV 89
SRL CQ+
Sbjct: 61 SRLGCQI 67
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A
[2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A
[2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A
[2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LE 80
G+SL A + N I+ I C S +CATCHV + E F +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 81 ENSRLSCQVIL 91
NSRL CQ+I+
Sbjct: 80 PNSRLCCQIIM 90
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LE 80
G+SL A + N I+ I C S +CATCHV + E F +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLEGVTAELK 79
Query: 81 ENSRLSCQVIL 91
NSRL CQ+I+
Sbjct: 80 PNSRLCCQIIM 90
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LE 80
G+SL A + N I+ I C S +CATCHV + E F +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLECVTAELK 79
Query: 81 ENSRLSCQVIL 91
NSRL CQ+I+
Sbjct: 80 PNSRLCCQIIM 90
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LE 80
G+SL A + N I+ I C S +CATCHV + E F +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLECVTAELK 79
Query: 81 ENSRLSCQVIL 91
NSRL CQ+I+
Sbjct: 80 PNSRLCCQIIM 90
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 22 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGL 79
G+++ +A N + I+ C +CAC+TCH + + +++ KA E DM++ A+
Sbjct: 18 KPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAY-- 75
Query: 80 EEN---SRLSCQVILGS--SDLTIEIPRYTI 105
E N SRL+CQ+ + S L + +P I
Sbjct: 76 EPNPATSRLTCQIKVTSLLDGLVVHLPEKQI 106
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 20 NENSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREGFNEI-NKANEVEEDMLNKAW 77
+ G SL + +N + I C SC CATC + I + + EI +AN E D+L
Sbjct: 16 DAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTG 75
Query: 78 -GLEENSRLSCQVILGSS--DLTIEIP 101
+ +RLSCQV + S L + +P
Sbjct: 76 EPMTAGTRLSCQVFIDPSMDGLIVRVP 102
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGLEE 81
G+SL +AL I + C C+CATCHV++ F + + + E D+L+ +
Sbjct: 20 GLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTP 79
Query: 82 NSRLSCQVIL 91
+SRLSCQ+ +
Sbjct: 80 HSRLSCQITI 89
>pdb|3C75|H Chain H, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
pdb|3C75|J Chain J, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
Length = 426
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 7 LPHPVLCEDGAIFNENSGI 25
LPHPV EDG+ F + S +
Sbjct: 120 LPHPVAAEDGSFFAQASTV 138
>pdb|1RLG|A Chain A, Molecular Basis Of Box CD RNA-Protein Interaction: Co-
Crystal Structure Of The Archaeal Srnp Intiation Complex
pdb|1RLG|B Chain B, Molecular Basis Of Box CD RNA-Protein Interaction: Co-
Crystal Structure Of The Archaeal Srnp Intiation Complex
Length = 119
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 67 EVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIPR 102
EV EDM N+A L E R S +V G+++ T + R
Sbjct: 6 EVPEDMQNEALSLLEKVRESGKVKKGTNETTKAVER 41
>pdb|2DBD|A Chain A, Solution Structure Of The Card Domain In Human Caspase
Recruitment Domain Protein 4 (Nod1 Protein)
Length = 107
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 27 LCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI-NKANEVEEDML 73
L D LLKN F E CAC T +R+ + + +K EV E L
Sbjct: 31 LVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFL 78
>pdb|2B1W|A Chain A, Solution Structure Of The Nod1 Caspase Activating And
Recruitment Domain
Length = 127
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 27 LCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI-NKANEVEEDML 73
L D LLKN F E CAC T +R+ + + +K EV E L
Sbjct: 29 LVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFL 76
>pdb|4E9M|A Chain A, Nod1 Card Domain With Three Disulfide-clinched,
Domain-swapped Dimers In The Asymmetric Unit
pdb|4E9M|B Chain B, Nod1 Card Domain With Three Disulfide-clinched,
Domain-swapped Dimers In The Asymmetric Unit
pdb|4E9M|C Chain C, Nod1 Card Domain With Three Disulfide-clinched,
Domain-swapped Dimers In The Asymmetric Unit
pdb|4E9M|D Chain D, Nod1 Card Domain With Three Disulfide-clinched,
Domain-swapped Dimers In The Asymmetric Unit
pdb|4E9M|E Chain E, Nod1 Card Domain With Three Disulfide-clinched,
Domain-swapped Dimers In The Asymmetric Unit
pdb|4E9M|F Chain F, Nod1 Card Domain With Three Disulfide-clinched,
Domain-swapped Dimers In The Asymmetric Unit
Length = 144
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 27 LCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI-NKANEVEEDML 73
L D LLKN F E CAC T +R+ + + +K EV E L
Sbjct: 46 LVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFL 93
>pdb|2NZ7|A Chain A, Crystal Structure Analysis Of Caspase-Recruitment Domain
(Card) Of Nod1
pdb|2NZ7|B Chain B, Crystal Structure Analysis Of Caspase-Recruitment Domain
(Card) Of Nod1
Length = 98
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 27 LCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI-NKANEVEEDML 73
L D LLKN F E CAC T +R+ + + +K EV E L
Sbjct: 32 LVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFL 79
>pdb|2NSN|A Chain A, Crystal Structure Of Caspace Activation And Recruitment
Domain (Card) Of Nod1
Length = 95
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 27 LCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI-NKANEVEEDML 73
L D LLKN F E CAC T +R+ + + +K EV E L
Sbjct: 25 LVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFL 72
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 429
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 25 ISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINK 64
I L +LL+ + I+ ++S AC C V GF + K
Sbjct: 197 IELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVK 236
>pdb|1T38|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna
Containing O6-Methylguanine
Length = 188
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 2 PQVIVLP-HPVLCEDGAIFNENSGISLCDALLKN 34
P I++P H V+C GA+ N + G+++ + LL +
Sbjct: 150 PVPILIPSHRVVCSSGAVGNYSGGLAVKEWLLAH 183
>pdb|1T39|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Covalently
Crosslinked To Dna
pdb|1T39|B Chain B, Human O6-Alkylguanine-Dna Alkyltransferase Covalently
Crosslinked To Dna
Length = 188
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 2 PQVIVLP-HPVLCEDGAIFNENSGISLCDALLKN 34
P I++P H V+C GA+ N + G+++ + LL +
Sbjct: 150 PVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAH 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,184,093
Number of Sequences: 62578
Number of extensions: 106301
Number of successful extensions: 388
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 41
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)