Query psy8859
Match_columns 109
No_of_seqs 229 out of 1134
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:10:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02007 fdx_isc ferredoxin, 100.0 5.9E-29 1.3E-33 161.1 11.8 106 2-107 1-106 (110)
2 PLN02593 adrenodoxin-like ferr 100.0 4.8E-28 1E-32 158.4 11.3 101 3-108 2-108 (117)
3 PTZ00490 Ferredoxin superfamil 99.9 1.6E-26 3.4E-31 155.5 11.6 100 3-107 37-142 (143)
4 COG0633 Fdx Ferredoxin [Energy 99.9 1.6E-24 3.4E-29 138.8 10.3 95 1-100 1-95 (102)
5 TIGR02008 fdx_plant ferredoxin 99.9 1.3E-24 2.9E-29 137.9 8.8 93 2-107 3-97 (97)
6 PRK10713 2Fe-2S ferredoxin Yfa 99.9 2.2E-24 4.7E-29 133.6 9.1 83 1-100 1-84 (84)
7 CHL00134 petF ferredoxin; Vali 99.9 1.4E-23 3.1E-28 133.7 8.0 83 16-106 16-98 (99)
8 PLN03136 Ferredoxin; Provision 99.9 4.3E-23 9.2E-28 139.7 8.3 92 2-106 55-147 (148)
9 KOG3309|consensus 99.9 1.2E-22 2.7E-27 136.3 8.4 101 3-108 45-150 (159)
10 PTZ00038 ferredoxin; Provision 99.9 2.5E-22 5.5E-27 140.5 8.0 90 3-105 97-187 (191)
11 TIGR01941 nqrF NADH:ubiquinone 99.8 6.6E-21 1.4E-25 146.4 9.7 95 1-103 29-123 (405)
12 PRK07609 CDP-6-deoxy-delta-3,4 99.8 8.2E-21 1.8E-25 142.4 8.3 92 1-104 2-93 (339)
13 cd00207 fer2 2Fe-2S iron-sulfu 99.8 2.1E-20 4.5E-25 114.5 6.9 77 15-99 8-84 (84)
14 PRK05464 Na(+)-translocating N 99.8 4.7E-20 1E-24 141.9 9.6 83 16-103 45-127 (409)
15 PRK05713 hypothetical protein; 99.8 3.5E-20 7.6E-25 138.0 8.1 86 1-102 1-86 (312)
16 PRK11872 antC anthranilate dio 99.8 1.9E-19 4E-24 135.6 8.6 92 1-103 1-95 (340)
17 COG3894 Uncharacterized metal- 99.8 1.2E-19 2.5E-24 141.0 6.9 91 1-105 1-91 (614)
18 COG2871 NqrF Na+-transporting 99.8 5.7E-19 1.2E-23 130.2 6.5 85 16-105 46-130 (410)
19 PRK10684 HCP oxidoreductase, N 99.7 3.5E-18 7.6E-23 128.1 7.3 78 14-99 255-332 (332)
20 PF00111 Fer2: 2Fe-2S iron-sul 99.7 1.6E-18 3.4E-23 105.2 3.8 71 15-92 6-78 (78)
21 TIGR02160 PA_CoA_Oxy5 phenylac 99.7 4.9E-18 1.1E-22 128.0 7.2 85 3-100 264-351 (352)
22 PRK07569 bidirectional hydroge 99.4 2.3E-13 4.9E-18 98.2 5.8 74 1-103 1-79 (234)
23 PF13510 Fer2_4: 2Fe-2S iron-s 99.3 1.7E-12 3.6E-17 80.0 5.1 69 3-101 3-80 (82)
24 PRK08166 NADH dehydrogenase su 99.3 7.7E-12 1.7E-16 103.8 7.5 77 1-103 1-82 (847)
25 PTZ00305 NADH:ubiquinone oxido 99.1 1.8E-10 3.9E-15 85.3 5.7 73 2-103 67-145 (297)
26 PRK12814 putative NADPH-depend 98.9 2.8E-09 6.1E-14 86.6 6.7 74 1-103 1-79 (652)
27 PRK09130 NADH dehydrogenase su 98.9 2.8E-09 6E-14 87.2 6.2 73 1-103 1-78 (687)
28 COG1034 NuoG NADH dehydrogenas 98.9 3.2E-09 6.9E-14 86.6 6.4 71 1-102 1-76 (693)
29 PRK08493 NADH dehydrogenase su 98.8 1.3E-08 2.7E-13 84.6 6.6 64 14-102 6-74 (819)
30 PRK06259 succinate dehydrogena 98.7 2.3E-08 5E-13 78.6 5.5 59 18-102 24-88 (486)
31 PRK07860 NADH dehydrogenase su 98.7 4E-08 8.6E-13 81.6 6.6 65 14-101 9-78 (797)
32 PRK09129 NADH dehydrogenase su 98.7 5.2E-08 1.1E-12 80.5 6.8 65 15-102 7-76 (776)
33 TIGR01973 NuoG NADH-quinone ox 98.6 1.3E-07 2.8E-12 76.2 6.1 67 14-102 3-74 (603)
34 COG3383 Uncharacterized anaero 98.3 8.9E-07 1.9E-11 72.8 5.6 44 14-58 10-58 (978)
35 PRK09908 xanthine dehydrogenas 98.2 5.7E-06 1.2E-10 56.8 5.7 49 2-58 7-58 (159)
36 PRK12577 succinate dehydrogena 98.1 5.3E-06 1.2E-10 62.8 5.0 40 18-59 22-67 (329)
37 PRK13552 frdB fumarate reducta 98.0 4.2E-06 9.1E-11 60.8 3.2 40 18-59 27-72 (239)
38 PRK11433 aldehyde oxidoreducta 98.0 1.4E-05 3E-10 57.3 5.6 49 3-59 51-103 (217)
39 PRK08640 sdhB succinate dehydr 98.0 5.7E-06 1.2E-10 60.5 3.2 40 18-59 26-78 (249)
40 TIGR03193 4hydroxCoAred 4-hydr 97.9 3.4E-05 7.4E-10 52.4 5.3 42 14-56 6-51 (148)
41 PF13085 Fer2_3: 2Fe-2S iron-s 97.8 3.7E-05 8.1E-10 49.8 4.5 39 18-58 22-66 (110)
42 COG2080 CoxS Aerobic-type carb 97.6 0.0002 4.4E-09 48.9 5.8 49 1-56 1-53 (156)
43 TIGR00384 dhsB succinate dehyd 97.6 6.2E-05 1.3E-09 53.9 3.4 40 18-59 18-63 (220)
44 TIGR03198 pucE xanthine dehydr 97.6 0.00017 3.8E-09 49.1 5.3 47 3-56 3-53 (151)
45 PRK12386 fumarate reductase ir 97.5 0.00016 3.4E-09 53.0 4.3 40 18-59 23-68 (251)
46 PRK05950 sdhB succinate dehydr 97.5 0.00012 2.5E-09 52.9 3.3 41 17-59 20-67 (232)
47 PRK12576 succinate dehydrogena 97.3 0.00027 5.9E-09 52.5 4.1 40 18-59 28-73 (279)
48 KOG2282|consensus 97.2 0.00042 9.2E-09 55.4 4.4 45 14-58 37-86 (708)
49 PRK12385 fumarate reductase ir 97.2 0.00033 7.2E-09 51.0 3.4 39 18-58 28-72 (244)
50 PRK07570 succinate dehydrogena 97.1 0.00032 7E-09 51.4 2.6 37 21-59 27-73 (250)
51 PRK09800 putative hypoxanthine 97.1 0.0011 2.4E-08 56.5 5.9 48 3-56 2-52 (956)
52 TIGR02963 xanthine_xdhA xanthi 97.0 0.0012 2.5E-08 52.4 4.4 42 14-56 5-51 (467)
53 COG0479 FrdB Succinate dehydro 96.9 0.00096 2.1E-08 48.5 3.5 40 18-59 23-68 (234)
54 TIGR03311 Se_dep_Molyb_1 selen 96.9 0.0016 3.5E-08 54.9 5.1 43 14-58 5-49 (848)
55 TIGR02969 mam_aldehyde_ox alde 96.8 0.0022 4.7E-08 56.5 5.0 48 2-56 1-53 (1330)
56 TIGR01372 soxA sarcosine oxida 96.7 0.0081 1.8E-07 51.4 8.1 73 3-102 12-95 (985)
57 PLN00129 succinate dehydrogena 96.7 0.0014 3E-08 48.8 2.5 40 18-59 63-111 (276)
58 PRK12575 succinate dehydrogena 96.3 0.0052 1.1E-07 44.6 3.8 39 18-58 24-70 (235)
59 TIGR03313 Se_sel_red_Mo probab 96.1 0.0093 2E-07 51.0 4.5 41 15-56 4-48 (951)
60 PLN00192 aldehyde oxidase 95.9 0.015 3.2E-07 51.5 5.1 47 3-56 5-56 (1344)
61 COG4630 XdhA Xanthine dehydrog 93.4 0.19 4.2E-06 39.3 5.1 48 2-56 7-59 (493)
62 PLN02906 xanthine dehydrogenas 90.0 0.36 7.8E-06 42.9 3.7 33 24-57 1-34 (1319)
63 KOG0430|consensus 89.3 0.69 1.5E-05 40.6 4.6 43 14-57 7-54 (1257)
64 PRK05659 sulfur carrier protei 89.2 0.89 1.9E-05 26.0 3.9 23 15-37 6-28 (66)
65 PRK00054 dihydroorotate dehydr 88.8 0.33 7.2E-06 34.9 2.2 32 26-58 195-232 (250)
66 cd06220 DHOD_e_trans_like2 FAD 87.1 0.56 1.2E-05 33.3 2.5 31 25-56 180-216 (233)
67 cd06221 sulfite_reductase_like 85.8 0.56 1.2E-05 33.9 2.0 30 25-54 203-240 (253)
68 cd06219 DHOD_e_trans_like1 FAD 85.8 0.81 1.8E-05 32.9 2.7 29 26-55 194-228 (248)
69 cd06218 DHOD_e_trans FAD/NAD b 85.2 0.89 1.9E-05 32.7 2.7 31 26-57 194-230 (246)
70 PF10418 DHODB_Fe-S_bind: Iron 85.0 0.9 2E-05 24.0 2.0 17 41-58 5-21 (40)
71 PF02824 TGS: TGS domain; Int 85.0 1.9 4.2E-05 24.5 3.6 30 14-43 6-35 (60)
72 smart00455 RBD Raf-like Ras-bi 83.0 1.7 3.7E-05 25.6 2.9 20 14-33 7-28 (70)
73 PRK07440 hypothetical protein; 82.1 3 6.4E-05 24.5 3.7 25 14-38 9-33 (70)
74 PRK08345 cytochrome-c3 hydroge 82.0 0.99 2.1E-05 33.3 1.9 33 25-58 225-266 (289)
75 cd01760 RBD Ubiquitin-like dom 81.9 3.1 6.7E-05 24.8 3.7 20 14-33 7-28 (72)
76 PRK05863 sulfur carrier protei 81.1 4.3 9.2E-05 23.3 4.1 24 15-38 6-29 (65)
77 PRK06222 ferredoxin-NADP(+) re 80.3 1.9 4E-05 31.7 2.9 30 26-56 195-230 (281)
78 PRK06944 sulfur carrier protei 79.5 4.5 9.6E-05 22.9 3.8 23 15-37 6-28 (65)
79 PRK06083 sulfur carrier protei 79.4 4.4 9.5E-05 24.8 3.9 31 1-37 16-46 (84)
80 PRK08364 sulfur carrier protei 79.1 4 8.6E-05 23.8 3.5 21 18-38 17-37 (70)
81 TIGR02911 sulfite_red_B sulfit 78.7 1.4 3.1E-05 32.0 1.8 29 26-54 204-240 (261)
82 COG2104 ThiS Sulfur transfer p 77.9 4.8 0.0001 23.7 3.6 25 14-38 7-31 (68)
83 KOG3049|consensus 75.7 1.9 4.1E-05 31.4 1.7 34 23-57 75-114 (288)
84 PRK08053 sulfur carrier protei 74.2 8.9 0.00019 22.0 4.1 24 15-38 6-29 (66)
85 COG4070 Predicted peptidyl-pro 70.8 5.6 0.00012 31.5 3.3 25 15-39 7-31 (512)
86 PF02196 RBD: Raf-like Ras-bin 70.6 7.7 0.00017 22.8 3.3 20 14-33 8-29 (71)
87 PRK05802 hypothetical protein; 70.1 4.6 0.0001 30.5 2.7 29 27-56 269-305 (320)
88 PRK12778 putative bifunctional 69.2 4.4 9.6E-05 33.9 2.7 29 26-55 195-229 (752)
89 cd01816 Raf_RBD Ubiquitin doma 69.1 5.5 0.00012 24.0 2.4 21 14-34 7-29 (74)
90 cd01817 RGS12_RBD Ubiquitin do 68.7 7.2 0.00016 23.4 2.8 39 14-59 7-48 (73)
91 PF03990 DUF348: Domain of unk 68.5 12 0.00027 19.6 3.5 29 4-38 2-31 (43)
92 PRK08221 anaerobic sulfite red 66.2 4 8.6E-05 29.7 1.7 28 26-54 206-242 (263)
93 PF03658 Ub-RnfH: RnfH family 65.6 8.4 0.00018 23.7 2.8 20 18-37 17-36 (84)
94 PRK00969 hypothetical protein; 64.7 11 0.00024 30.5 3.9 34 1-42 1-34 (508)
95 PF14451 Ub-Mut7C: Mut7-C ubiq 64.5 18 0.00039 21.9 4.1 22 18-39 26-47 (81)
96 TIGR01683 thiS thiamine biosyn 61.1 13 0.00028 21.0 2.9 24 14-37 3-26 (64)
97 cd01818 TIAM1_RBD Ubiquitin do 60.3 10 0.00023 22.9 2.4 30 14-43 7-42 (77)
98 cd01791 Ubl5 UBL5 ubiquitin-li 60.0 19 0.0004 21.2 3.5 25 1-30 1-27 (73)
99 PRK07696 sulfur carrier protei 59.3 25 0.00054 20.3 3.9 23 15-37 6-29 (67)
100 PRK12775 putative trifunctiona 58.6 8.4 0.00018 33.6 2.5 30 26-56 195-230 (1006)
101 PF10531 SLBB: SLBB domain; I 58.6 9.6 0.00021 21.3 2.0 24 17-40 12-35 (59)
102 PRK01777 hypothetical protein; 57.2 14 0.0003 23.2 2.7 22 18-39 20-41 (95)
103 cd06192 DHOD_e_trans_like FAD/ 57.0 6 0.00013 28.1 1.2 16 40-56 214-229 (243)
104 COG2071 Predicted glutamine am 54.2 8.4 0.00018 28.3 1.5 19 26-44 98-116 (243)
105 cd01668 TGS_RelA_SpoT TGS_RelA 54.1 18 0.00039 19.5 2.6 25 14-38 6-30 (60)
106 PRK12779 putative bifunctional 53.1 12 0.00026 32.5 2.6 29 26-55 861-895 (944)
107 PRK13669 hypothetical protein; 51.6 8.5 0.00019 23.4 1.1 38 28-68 20-62 (78)
108 PF01476 LysM: LysM domain; I 48.6 22 0.00048 18.0 2.3 20 20-39 2-21 (44)
109 COG3061 OapA Cell envelope opa 46.5 20 0.00044 26.1 2.5 24 17-40 160-183 (242)
110 cd00565 ThiS ThiaminS ubiquiti 46.3 29 0.00064 19.5 2.8 24 14-37 4-27 (65)
111 cd01995 ExsB ExsB is a transcr 46.1 20 0.00044 23.9 2.4 28 25-52 127-158 (169)
112 PF04225 OapA: Opacity-associa 46.0 23 0.00049 21.6 2.4 21 18-38 4-24 (85)
113 TIGR02899 spore_safA spore coa 46.0 15 0.00033 18.2 1.4 19 21-39 1-19 (44)
114 cd00118 LysM Lysin domain, fou 44.5 32 0.0007 16.3 2.5 21 18-38 2-22 (46)
115 PRK06437 hypothetical protein; 44.3 51 0.0011 18.9 3.6 21 17-37 13-33 (67)
116 PRK00413 thrS threonyl-tRNA sy 43.1 33 0.00071 28.1 3.5 29 1-36 1-29 (638)
117 cd01667 TGS_ThrRS_N TGS _ThrRS 42.7 51 0.0011 17.1 3.5 21 14-34 6-26 (61)
118 PF09791 Oxidored-like: Oxidor 42.2 17 0.00036 20.0 1.2 17 39-56 15-31 (48)
119 PF06508 QueC: Queuosine biosy 41.0 17 0.00037 25.7 1.4 25 27-52 166-197 (209)
120 PRK11106 queuosine biosynthesi 39.0 28 0.0006 25.2 2.3 26 26-52 167-201 (231)
121 TIGR00364 exsB protein. This p 37.5 36 0.00078 23.5 2.6 27 26-52 163-196 (201)
122 cd01616 TGS The TGS domain, na 36.9 63 0.0014 16.6 3.1 23 14-36 6-28 (60)
123 PF11543 UN_NPL4: Nuclear pore 36.9 67 0.0014 19.2 3.4 26 3-33 6-32 (80)
124 cd01792 ISG15_repeat1 ISG15 ub 36.3 77 0.0017 18.5 3.6 25 1-30 1-28 (80)
125 PF14026 DUF4242: Protein of u 36.1 46 0.00099 19.8 2.6 22 18-39 51-72 (77)
126 PF08952 DUF1866: Domain of un 36.0 68 0.0015 21.8 3.6 30 3-38 65-94 (146)
127 COG2440 FixX Ferredoxin-like p 35.1 17 0.00038 23.0 0.6 12 46-57 68-79 (99)
128 PRK12444 threonyl-tRNA synthet 34.8 56 0.0012 27.0 3.7 28 1-35 5-32 (639)
129 PRK06488 sulfur carrier protei 34.6 88 0.0019 17.5 3.7 22 15-37 6-27 (65)
130 PF11470 TUG-UBL1: GLUT4 regul 34.0 33 0.00072 19.9 1.7 21 14-34 4-26 (65)
131 PRK11092 bifunctional (p)ppGpp 33.5 42 0.0009 28.4 2.8 31 14-44 393-423 (702)
132 PRK11840 bifunctional sulfur c 33.2 78 0.0017 24.4 3.9 23 15-37 6-28 (326)
133 smart00257 LysM Lysin motif. 32.8 51 0.0011 15.3 2.1 20 19-38 2-21 (44)
134 PF09012 FeoC: FeoC like trans 29.1 39 0.00085 19.3 1.4 25 26-52 33-61 (69)
135 PRK10872 relA (p)ppGpp synthet 28.7 46 0.001 28.4 2.3 31 14-44 411-441 (743)
136 PF14478 DUF4430: Domain of un 27.4 46 0.00099 19.0 1.5 17 24-41 1-17 (68)
137 PF00732 GMC_oxred_N: GMC oxid 26.5 1.4E+02 0.0031 21.4 4.3 62 25-92 154-217 (296)
138 COG1683 Uncharacterized conser 26.3 65 0.0014 22.2 2.3 34 25-58 89-122 (156)
139 PRK10509 bacterioferritin-asso 25.9 54 0.0012 18.8 1.6 32 25-56 12-47 (64)
140 PRK08569 rpl18p 50S ribosomal 25.8 50 0.0011 23.5 1.7 17 25-41 117-133 (193)
141 COG3086 RseC Positive regulato 25.8 51 0.0011 22.5 1.7 59 39-107 17-76 (150)
142 PF02591 DUF164: Putative zinc 25.7 36 0.00078 18.7 0.8 14 45-58 22-35 (56)
143 COG2914 Uncharacterized protei 25.4 74 0.0016 20.2 2.2 20 18-37 20-39 (99)
144 cd04661 MRP_L46 Mitochondrial 23.8 61 0.0013 20.7 1.8 13 21-33 35-47 (132)
145 PF11575 FhuF_C: FhuF 2Fe-2S C 23.6 44 0.00096 15.2 0.8 9 44-52 12-20 (22)
146 TIGR00691 spoT_relA (p)ppGpp s 23.1 67 0.0015 27.0 2.2 31 14-44 367-397 (683)
147 KOG4214|consensus 22.6 26 0.00056 22.5 -0.2 20 17-36 93-112 (117)
148 PF14453 ThiS-like: ThiS-like 22.3 1.6E+02 0.0036 16.6 3.5 32 15-59 6-37 (57)
149 PRK14125 cell division suppres 21.9 1.1E+02 0.0024 19.3 2.6 20 17-36 37-56 (103)
150 cd01807 GDX_N ubiquitin-like d 21.7 1.7E+02 0.0037 16.6 3.7 24 2-30 1-26 (74)
151 cd01803 Ubiquitin Ubiquitin. U 21.6 1.6E+02 0.0036 16.4 3.6 24 2-30 1-26 (76)
152 COG0317 SpoT Guanosine polypho 21.1 92 0.002 26.5 2.6 31 14-44 394-424 (701)
153 PF12807 eIF3_p135: Translatio 20.8 61 0.0013 22.0 1.3 21 20-40 6-26 (169)
154 PRK15431 ferrous iron transpor 20.6 60 0.0013 19.7 1.1 13 39-52 53-65 (78)
155 cd01805 RAD23_N Ubiquitin-like 20.3 1.8E+02 0.0039 16.4 3.7 24 2-30 1-26 (77)
No 1
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.96 E-value=5.9e-29 Score=161.14 Aligned_cols=106 Identities=57% Similarity=1.085 Sum_probs=94.2
Q ss_pred CEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCC
Q psy8859 2 PQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 81 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~ 81 (109)
|+|.|+++..+.|.|++|++.+|+|||++++++|+++++.|+|.|.||+|+|+|.+|...+++.+..|.+.|+...+..+
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~ 80 (110)
T TIGR02007 1 PKIVFLPHEDLCPEGAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEP 80 (110)
T ss_pred CeEEEEeCcccCCCCeEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCC
Confidence 57888877777799999999999999999999999999999999999999999999987788888888888874446789
Q ss_pred CeEEeeeeEeeCCCEEEEeCCCCccc
Q psy8859 82 NSRLSCQVILGSSDLTIEIPRYTINQ 107 (109)
Q Consensus 82 ~~rLaCq~~~~~~di~v~~~~~~~~~ 107 (109)
+||||||+.+.++|++|++|..+.+.
T Consensus 81 ~~RLaCq~~~~~~dl~v~~~~~~~~~ 106 (110)
T TIGR02007 81 DSRLSCQAVVADEDLVVEIPKYTINH 106 (110)
T ss_pred CcEEeeeEEEcCCCEEEEECchhhhh
Confidence 99999999998569999999876654
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.96 E-value=4.8e-28 Score=158.45 Aligned_cols=101 Identities=40% Similarity=0.661 Sum_probs=88.6
Q ss_pred EEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecC--CcccCCCCCHHHHhhchhcCC
Q psy8859 3 QVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIRE--GFNEINKANEVEEDMLNKAWG 78 (109)
Q Consensus 3 ~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~--g~~~l~~~~~~E~~~L~~~~~ 78 (109)
+|+|++ ++| +++++..|+|||++++++|+++++.|+|.|.||+|+|+|.+ +...++++++.|+++|+...+
T Consensus 2 ~V~fi~-----~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~ 76 (117)
T PLN02593 2 SVTFVD-----KDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFG 76 (117)
T ss_pred EEEEEc-----CCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccC
Confidence 789976 677 47899999999999999999999999999999999999954 346789999999999985467
Q ss_pred CCCCeEEeeeeEeeC--CCEEEEeCCCCcccc
Q psy8859 79 LEENSRLSCQVILGS--SDLTIEIPRYTINQV 108 (109)
Q Consensus 79 ~~~~~rLaCq~~~~~--~di~v~~~~~~~~~~ 108 (109)
+.++||||||+.+.+ +|++|++|..+.|++
T Consensus 77 ~~~~sRLaCQ~~v~~~~~~~~v~ip~~~~~~~ 108 (117)
T PLN02593 77 LTETSRLGCQVIAKPELDGMRLALPAATRNFA 108 (117)
T ss_pred CCCCeEecceeEeecCCCCEEEEcCchhcccc
Confidence 889999999999985 389999999887765
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.94 E-value=1.6e-26 Score=155.54 Aligned_cols=100 Identities=37% Similarity=0.595 Sum_probs=88.4
Q ss_pred EEEEEeCCccCCCC--cEEEeCCCChHHHHHHhC-CCCccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcCC
Q psy8859 3 QVIVLPHPVLCEDG--AIFNENSGISLCDALLKN-SIFIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG 78 (109)
Q Consensus 3 ~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~-gi~i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~~ 78 (109)
+|+|.+ ++| +++++++|+|||+++.++ ++++++.|+|.|.||+|||+|.+|+ ..++++++.|+++|+...+
T Consensus 37 ~I~~~~-----~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~ 111 (143)
T PTZ00490 37 KVCVKK-----RDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALD 111 (143)
T ss_pred EEEEEc-----CCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhcccc
Confidence 688886 778 589999999999999995 6899999999999999999999985 7789999999999995447
Q ss_pred CCCCeEEeeeeEeeC--CCEEEEeCCCCccc
Q psy8859 79 LEENSRLSCQVILGS--SDLTIEIPRYTINQ 107 (109)
Q Consensus 79 ~~~~~rLaCq~~~~~--~di~v~~~~~~~~~ 107 (109)
+.+++|||||+.+.+ +|++|++|+...|.
T Consensus 112 ~~~gsRLaCQi~v~~~ldgl~V~vp~~~~~~ 142 (143)
T PTZ00490 112 VKETSRLACQVDLTPEMDGLEVELPSYVTNR 142 (143)
T ss_pred CCCCcEEeeeEEEecCCCCEEEEeCcccccc
Confidence 899999999999985 47899999887764
No 4
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.92 E-value=1.6e-24 Score=138.76 Aligned_cols=95 Identities=44% Similarity=0.664 Sum_probs=78.0
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
|+++.|..+.+ ++...+.++.|+|||++|+++||+++|+|+| |.||||+|+|.+|...++++++.|..+|. +....
T Consensus 1 ~~~~~~v~~~~--~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~-g~C~TC~v~v~~G~~~v~~~~~~e~~~l~-~~~~~ 76 (102)
T COG0633 1 MPKIAFVTIDG--EGDVTEAVNEGETLLEAAERNGIPIEYACRG-GACGTCRVKVLEGFDEVSPPEESEEDLLD-AAGLE 76 (102)
T ss_pred CCceEEEeccC--CcceEEeccCCcHHHHHHHHCCCcceecCCC-CccCccEEEEecCcccCCCcchHHHHHHH-hhccC
Confidence 78888886321 1223455666999999999999999999995 69999999999997778888888888988 67788
Q ss_pred CCeEEeeeeEeeCCCEEEEe
Q psy8859 81 ENSRLSCQVILGSSDLTIEI 100 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~ 100 (109)
.++||+||+++. +|+.+.+
T Consensus 77 ~~~rL~Cq~~~~-~d~~i~~ 95 (102)
T COG0633 77 GNSRLSCQCRVK-GDLDIEV 95 (102)
T ss_pred CCcEEeeeeEEC-CCcceEE
Confidence 889999999998 7666544
No 5
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.92 E-value=1.3e-24 Score=137.87 Aligned_cols=93 Identities=24% Similarity=0.302 Sum_probs=77.8
Q ss_pred CEEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCC
Q psy8859 2 PQVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~ 79 (109)
.+|+|.+ ++| ++|.+++|+|||++++++||+++++|+ .|.||+|+++|.+|...+.. ...|+ .+++
T Consensus 3 ~~v~~~~-----~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~-----~~~l~-~~~~ 70 (97)
T TIGR02008 3 YKVTLVN-----PDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKVEEGTVDQSD-----QSFLD-DDQM 70 (97)
T ss_pred EEEEEEE-----CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEEEeCcEecCc-----cCCCC-HHHH
Confidence 3678854 566 789999999999999999999999999 89999999999999754322 23465 4567
Q ss_pred CCCeEEeeeeEeeCCCEEEEeCCCCccc
Q psy8859 80 EENSRLSCQVILGSSDLTIEIPRYTINQ 107 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~di~v~~~~~~~~~ 107 (109)
++++||+||+++. +|++|+++....++
T Consensus 71 ~~g~~LaC~~~~~-~di~v~~~~~~~~~ 97 (97)
T TIGR02008 71 EAGYVLTCVAYPT-SDCTIETHKEEDLY 97 (97)
T ss_pred hCCeEEEeeCEEC-CCeEEEeccccccC
Confidence 8899999999998 99999999876653
No 6
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.91 E-value=2.2e-24 Score=133.65 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=70.8
Q ss_pred CCEEEEEeCCccCCCCcEEEeCC-CChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENS-GISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~-g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~ 79 (109)
||+|+|. +.|++|++++ |+|||++++++|+++||+|+ .|.||+|++++++|........ ..++
T Consensus 1 ~~~v~~~------~~~~~~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~~sG~v~~~~~~---------~~~~ 64 (84)
T PRK10713 1 MARVTLR------ITGTQLLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRLVAGQVDWIAEP---------LAFI 64 (84)
T ss_pred CCEEEEE------eCCcEEEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEEEeCeEecCCCc---------cchh
Confidence 9999998 7899999986 59999999999999999999 8999999999999975432211 1245
Q ss_pred CCCeEEeeeeEeeCCCEEEEe
Q psy8859 80 EENSRLSCQVILGSSDLTIEI 100 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~di~v~~ 100 (109)
+++++|+||+++. +|++|++
T Consensus 65 ~~g~~L~C~~~p~-sd~~ie~ 84 (84)
T PRK10713 65 QPGEILPCCCRAK-GDIEIEM 84 (84)
T ss_pred hCCEEEEeeCEEC-CCEEEeC
Confidence 6789999999999 8999874
No 7
>CHL00134 petF ferredoxin; Validated
Probab=99.90 E-value=1.4e-23 Score=133.65 Aligned_cols=83 Identities=23% Similarity=0.288 Sum_probs=71.2
Q ss_pred CcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEeeCCC
Q psy8859 16 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSSD 95 (109)
Q Consensus 16 g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~~~d 95 (109)
+++|++++|+|||++|+++||+++++|+ .|.||+|+++|.+|.....+ ...|+ ..+++++++|+||+++. +|
T Consensus 16 ~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v~~G~v~~~~-----~~~l~-~~e~~~g~~L~C~~~~~-~d 87 (99)
T CHL00134 16 DVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKVTEGTVDQSD-----QSFLD-DDQLEAGFVLTCVAYPT-SD 87 (99)
T ss_pred eEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEEeCccccCc-----ccCCC-HHHHhCCeEEEeeCEEC-CC
Confidence 3479999999999999999999999999 99999999999999754322 22366 45678899999999998 99
Q ss_pred EEEEeCCCCcc
Q psy8859 96 LTIEIPRYTIN 106 (109)
Q Consensus 96 i~v~~~~~~~~ 106 (109)
++|++|..+.+
T Consensus 88 ~~i~~~~~~~~ 98 (99)
T CHL00134 88 CTILTHQEEEL 98 (99)
T ss_pred eEEEecccccc
Confidence 99999988765
No 8
>PLN03136 Ferredoxin; Provisional
Probab=99.89 E-value=4.3e-23 Score=139.66 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=77.3
Q ss_pred CEEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 2 PQVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
.+|+|.+ +++ ++|++++|+||||+++++||++||+|+ .|.||+|+++|.+|.+... +...|+ .++++
T Consensus 55 ~~V~l~~-----~~~~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l~~G~V~~~-----~~~~L~-~~e~~ 122 (148)
T PLN03136 55 YKVKFIT-----PEGEQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKVVSGSIDQS-----DQSFLD-DEQIS 122 (148)
T ss_pred EEEEEec-----CCCcEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEEecCcCccC-----cccCCC-HHHhc
Confidence 3577753 555 689999999999999999999999999 8999999999999975432 234576 56788
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCcc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTIN 106 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~~ 106 (109)
+||+|+||+++. +|++|+++.+...
T Consensus 123 ~G~~LaC~a~p~-sD~~Ie~~~e~~l 147 (148)
T PLN03136 123 EGYVLTCVAYPT-SDVVIETHKEEAI 147 (148)
T ss_pred CCEEEEeEeEEC-CCcEEecCChhhc
Confidence 999999999998 9999999977543
No 9
>KOG3309|consensus
Probab=99.88 E-value=1.2e-22 Score=136.34 Aligned_cols=101 Identities=37% Similarity=0.658 Sum_probs=92.7
Q ss_pred EEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcCCC
Q psy8859 3 QVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~~~ 79 (109)
+|+|++ ++|. .+.+..|+|||+++.++||+++..|.|.-.|.||||.|.+.+ +.+++|+++|.++|+.+..+
T Consensus 45 ~Itfv~-----~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gL 119 (159)
T KOG3309|consen 45 KITFVD-----PDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGL 119 (159)
T ss_pred EEEEEC-----CCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhcc
Confidence 789997 8887 578899999999999999999999999999999999999875 67889999999999988889
Q ss_pred CCCeEEeeeeEeeCC--CEEEEeCCCCcccc
Q psy8859 80 EENSRLSCQVILGSS--DLTIEIPRYTINQV 108 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~--di~v~~~~~~~~~~ 108 (109)
.+.+||.||+.++++ +|+|.+|...+|+.
T Consensus 120 t~tSRLGCQI~l~keldG~~v~vP~atrn~~ 150 (159)
T KOG3309|consen 120 TETSRLGCQIVLTKELDGMRVAVPEATRNFR 150 (159)
T ss_pred ccccccceEEEeccccCCcEEECcccccccc
Confidence 999999999999875 89999999998875
No 10
>PTZ00038 ferredoxin; Provisional
Probab=99.87 E-value=2.5e-22 Score=140.49 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=76.3
Q ss_pred EEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCC
Q psy8859 3 QVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 81 (109)
Q Consensus 3 ~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~ 81 (109)
+|+|.. +++ +++++++|+|||++++++||++|+.|+ .|.||+|+++|.+|..... +...|+ .+++++
T Consensus 97 ~Vt~~~-----~~g~~~~~v~~geTILdAae~aGI~lp~sCr-~G~CGtCkvrV~~GeV~~~-----e~~~Ls-~ee~~~ 164 (191)
T PTZ00038 97 NITLQT-----PDGEKVIECDEDEYILDAAERQGVELPYSCR-GGSCSTCAAKLLEGEVDNE-----DQSYLD-DEQLKK 164 (191)
T ss_pred EEEEEe-----CCCcEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEeEEeecccccC-----ccccCC-HHHhcC
Confidence 677753 444 799999999999999999999999999 5999999999999975332 334577 567889
Q ss_pred CeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 82 NSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 82 ~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
|++|+||+++. +|++|++|.+..
T Consensus 165 G~~LaCqa~p~-sDi~Ie~p~e~~ 187 (191)
T PTZ00038 165 GYCLLCTCYPK-SDCTIETHKEDE 187 (191)
T ss_pred CEEEEeeCEEC-CCeEEecCChHH
Confidence 99999999999 999999998764
No 11
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.84 E-value=6.6e-21 Score=146.37 Aligned_cols=95 Identities=31% Similarity=0.455 Sum_probs=78.6
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
|++|++.... ..++++++++|+|||++++++|+++++.|+|.|.||+|+|+|.+|...+ +..|...|+ ..+++
T Consensus 29 ~~~v~v~~~~---~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~---~~~~~~~L~-~~~~~ 101 (405)
T TIGR01941 29 SGDITIGIND---DEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEI---LPTELSHFS-KREAK 101 (405)
T ss_pred cccEEEEEcC---CCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCC---ChhhhhhcC-HhHhc
Confidence 4577776310 2236899999999999999999999999998899999999999997533 334667888 56888
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+++||+||+.+. +|++|+++..
T Consensus 102 ~g~rLaCq~~~~-~d~~i~~~~~ 123 (405)
T TIGR01941 102 EGWRLSCQVKVK-QDMSIEIPEE 123 (405)
T ss_pred CCcEEEeeCEEC-CCEEEEECcc
Confidence 999999999998 9999999843
No 12
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.84 E-value=8.2e-21 Score=142.42 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=77.8
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
+.+|+|. +.++++++++|+|||++++++||+++++|+ .|.||+|++++.+|...... .+...|+ ..+++
T Consensus 2 ~~~v~~~------~~~~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~~~---~~~~~l~-~~~~~ 70 (339)
T PRK07609 2 SFQVTLQ------PSGRQFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRLLEGEVEQGP---HQASALS-GEERA 70 (339)
T ss_pred cEEEEEe------cCCeEEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEEEECcEeccc---ccccCCC-HHHHh
Confidence 1388988 789999999999999999999999999999 89999999999999754432 1245676 45678
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCC
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYT 104 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~ 104 (109)
++++|+||+++. +|++|+++...
T Consensus 71 ~g~~L~C~~~~~-~d~~i~~~~~~ 93 (339)
T PRK07609 71 AGEALTCCAKPL-SDLVLEAREVP 93 (339)
T ss_pred CCcEEEeeCEEC-CCEEEEecccc
Confidence 899999999998 89999988543
No 13
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.83 E-value=2.1e-20 Score=114.50 Aligned_cols=77 Identities=30% Similarity=0.427 Sum_probs=65.1
Q ss_pred CCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEeeCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSS 94 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~~~ 94 (109)
+++++++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|...+.+. ..+. ..+..+++||+||+++. +
T Consensus 8 ~~~~~~~~~g~~ll~al~~~g~~~~~~C~-~g~Cg~C~v~v~~G~~~~~~~-----~~~~-~~~~~~~~~LaC~~~~~-~ 79 (84)
T cd00207 8 SGVEVEVPEGETLLDAAREAGIDIPYSCR-AGACGTCKVEVVEGEVDQSDP-----SLLD-EEEAEGGYVLACQTRVT-D 79 (84)
T ss_pred CCEEEEECCCCcHHHHHHHcCCCcccCCC-CcCCcCCEEEEeeCccccCcc-----cCCC-HHHHhCCeEEEEeCeeC-C
Confidence 67899999999999999999999999999 589999999999997655432 2333 34567899999999997 8
Q ss_pred CEEEE
Q psy8859 95 DLTIE 99 (109)
Q Consensus 95 di~v~ 99 (109)
|++|+
T Consensus 80 ~i~v~ 84 (84)
T cd00207 80 GLVIE 84 (84)
T ss_pred CcEEC
Confidence 99874
No 14
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.82 E-value=4.7e-20 Score=141.86 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=72.7
Q ss_pred CcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEeeCCC
Q psy8859 16 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSSD 95 (109)
Q Consensus 16 g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~~~d 95 (109)
++++++++|+|||++++++|+++++.|+|.|.||+|+|+|.+|...+. ..|...|+ ..++.+++|||||+++. +|
T Consensus 45 ~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~---~~e~~~l~-~~e~~~g~rLaCq~~~~-~d 119 (409)
T PRK05464 45 EKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDIL---PTELSHIS-KREAKEGWRLSCQVKVK-QD 119 (409)
T ss_pred cEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCC---hhhhhhcC-HhhccCCcEEEeeCEEC-CC
Confidence 589999999999999999999999999988999999999999975433 34566787 56788999999999998 89
Q ss_pred EEEEeCCC
Q psy8859 96 LTIEIPRY 103 (109)
Q Consensus 96 i~v~~~~~ 103 (109)
++|+++..
T Consensus 120 ~~ie~~~~ 127 (409)
T PRK05464 120 MKIEVPEE 127 (409)
T ss_pred EEEEECcc
Confidence 99998743
No 15
>PRK05713 hypothetical protein; Provisional
Probab=99.82 E-value=3.5e-20 Score=138.01 Aligned_cols=86 Identities=28% Similarity=0.396 Sum_probs=72.5
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
||++++ +|++|++++|+|||++++++||+++++|+ .|.||+|++++.+|..... ....|+ ..+++
T Consensus 1 ~~~~~~--------~~~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~~~~~-----~~~~l~-~~~~~ 65 (312)
T PRK05713 1 MPELRV--------GERRWSVPAGSNLLDALNAAGVAVPYSCR-AGSCHACLVRCLQGEPEDA-----LPEALA-AEKRE 65 (312)
T ss_pred CCcEec--------CCeEEEECCCCcHHHHHHHcCCCCCcCCC-CcCCCCCeEEEEeCccccC-----ccccCC-HHHHh
Confidence 677665 57899999999999999999999999999 7999999999999974311 123465 45678
Q ss_pred CCeEEeeeeEeeCCCEEEEeCC
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPR 102 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~ 102 (109)
+++||+||+++. +|++|++++
T Consensus 66 ~g~~L~C~~~~~-~d~~i~~~~ 86 (312)
T PRK05713 66 QGWRLACQCRVV-GDLRVEVFD 86 (312)
T ss_pred CCeEEEeECEEC-CceEEEecC
Confidence 899999999998 999999863
No 16
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.80 E-value=1.9e-19 Score=135.63 Aligned_cols=92 Identities=28% Similarity=0.398 Sum_probs=74.4
Q ss_pred CC-EEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcC
Q psy8859 1 MP-QVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAW 77 (109)
Q Consensus 1 M~-~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~ 77 (109)
|. +|++.+ ++|+ .+++++|+|||++++++|+.+|++|+ .|.||+|+++|++|...... .+...|+ ..
T Consensus 1 m~~~v~~~~-----~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~~~G~~~~~~---~~~~~l~-~~ 70 (340)
T PRK11872 1 MNHKVALSF-----ADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRCESGIYSQDY---VDEDALS-ER 70 (340)
T ss_pred CceEEEEEe-----cCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEEEeCccccCc---cccccCC-HH
Confidence 53 777754 4565 47889999999999999999999999 89999999999999754321 1234566 45
Q ss_pred CCCCCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 78 GLEENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 78 ~~~~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+++++++|+||+++. +|++|+++..
T Consensus 71 ~~~~g~~L~C~~~~~-~d~~i~~~~~ 95 (340)
T PRK11872 71 DLAQRKMLACQTRVK-SDAAFYFDFD 95 (340)
T ss_pred HHhCCeEEEeeCEEC-CceEEEecCc
Confidence 678899999999998 9999998753
No 17
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.79 E-value=1.2e-19 Score=141.00 Aligned_cols=91 Identities=30% Similarity=0.541 Sum_probs=80.2
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
||.|+|. |.|+..+ +.|+|||+++++.|+.+.+.|+|+|+||.|+|.|.+|..++...++.| ..+. .
T Consensus 1 ~p~v~f~------psgkr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~-k~~~-----~ 67 (614)
T COG3894 1 MPLVTFM------PSGKRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHE-KYLR-----E 67 (614)
T ss_pred CceeEee------cCCCcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHH-HHHH-----h
Confidence 8999999 8999998 999999999999999999999999999999999999986666555543 3444 2
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
.|||||||+++. +|++|.+|+.+.
T Consensus 68 ~g~rlac~~~v~-gd~~i~ip~es~ 91 (614)
T COG3894 68 RGYRLACQAQVL-GDLVIFIPPESR 91 (614)
T ss_pred hceeeeeehhhc-CceEEEcCchhh
Confidence 399999999999 999999998765
No 18
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.77 E-value=5.7e-19 Score=130.22 Aligned_cols=85 Identities=31% Similarity=0.474 Sum_probs=73.7
Q ss_pred CcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEeeCCC
Q psy8859 16 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSSD 95 (109)
Q Consensus 16 g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~~~d 95 (109)
.+++.+++|.+||.++..+||.+++.|||.|+||.|+|+|.+|....- +.|...++ ..+..+||||+||+.++ .|
T Consensus 46 e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~L---pTe~sh~s-krea~eG~RLsCQ~~Vk-~d 120 (410)
T COG2871 46 EKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEIL---PTELSHIS-KREAKEGWRLSCQVNVK-HD 120 (410)
T ss_pred hhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccC---cchhhhhh-hhhhhccceEEEEeccc-cc
Confidence 358999999999999999999999999999999999999999863322 24677888 46888999999999998 99
Q ss_pred EEEEeCCCCc
Q psy8859 96 LTIEIPRYTI 105 (109)
Q Consensus 96 i~v~~~~~~~ 105 (109)
|.+++|+.--
T Consensus 121 m~levpEe~f 130 (410)
T COG2871 121 MDLEVPEEVF 130 (410)
T ss_pred ceeechHHhc
Confidence 9999997643
No 19
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.74 E-value=3.5e-18 Score=128.14 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=66.9
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEeeC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILGS 93 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~~ 93 (109)
..++++++++|+|||++|+++||+++++|+ .|.||+|++++++|.+.... ...|+ ..++++|++|+||+++.
T Consensus 255 ~~~~~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~~~~-----~~~l~-~~~~~~g~~l~C~~~~~- 326 (332)
T PRK10684 255 QPAREFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKVVSGEYTVSS-----TMTLT-PAEIAQGYVLACSCHPQ- 326 (332)
T ss_pred cCCEEEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEEecCcccccc-----cccCC-HHHHhCCcEEEeeCEEC-
Confidence 578899999999999999999999999999 89999999999999754321 23566 46778899999999998
Q ss_pred CCEEEE
Q psy8859 94 SDLTIE 99 (109)
Q Consensus 94 ~di~v~ 99 (109)
+|++|+
T Consensus 327 ~d~~i~ 332 (332)
T PRK10684 327 GDLVLA 332 (332)
T ss_pred CCeEEC
Confidence 888763
No 20
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.74 E-value=1.6e-18 Score=105.18 Aligned_cols=71 Identities=31% Similarity=0.464 Sum_probs=52.7
Q ss_pred CCcEEEeCCCCh-HHHHHHhC-CCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEee
Q psy8859 15 DGAIFNENSGIS-LCDALLKN-SIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILG 92 (109)
Q Consensus 15 ~g~~i~~~~g~t-Ll~a~~~~-gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~ 92 (109)
.+.+|++++|+| ||++++++ |+++++.|++ |.||+|+|+|.+|+. .......+...+. ..+.||+||++++
T Consensus 6 ~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~-g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~-----~~~~rLaCq~~~t 78 (78)
T PF00111_consen 6 KGVTVEVPPGETLLLDALERAGGIGIPYSCGG-GGCGTCRVRVLEGEV-QSNETFLEDEELA-----EGGIRLACQTRVT 78 (78)
T ss_dssp EEEEEEEETTSBBHHHHHHHTTTTTSTTSSSS-SSSSTTEEEEEESEE-ETTTSSSHHHHHH-----TTEEEEGGGSEES
T ss_pred eEEEEEeCCCccHHHHHHHHcCCCCcccCCCC-CccCCcEEEEeeCcc-cCCcccCCHHHHH-----cCCCcCCcEEEeC
Confidence 334899999999 99999999 9999999995 669999999999976 2111111222222 2345899999874
No 21
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.74 E-value=4.9e-18 Score=127.97 Aligned_cols=85 Identities=25% Similarity=0.347 Sum_probs=69.2
Q ss_pred EEEEEeCCccCCCCcE---EEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCC
Q psy8859 3 QVIVLPHPVLCEDGAI---FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~---i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~ 79 (109)
+|+|. ..|+. +.+++|+|||++++++||+++++|+ .|.||+|++++++|.+.+. +...|+ ..++
T Consensus 264 ~v~~~------~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~-~~~~ 330 (352)
T TIGR02160 264 KVTVT------LDGRSTETSSLSRDESVLDAALRARPDLPFACK-GGVCGTCRAKVLEGKVDME-----RNYALE-PDEV 330 (352)
T ss_pred EEEEE------ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCC-CccCCCCEEEEeccccccc-----cccCCC-HHHH
Confidence 57776 56665 4678999999999999999999999 7999999999999986542 223466 4567
Q ss_pred CCCeEEeeeeEeeCCCEEEEe
Q psy8859 80 EENSRLSCQVILGSSDLTIEI 100 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~di~v~~ 100 (109)
++|++|+||+++.+++++|++
T Consensus 331 ~~g~~l~C~~~~~~~~~~~~~ 351 (352)
T TIGR02160 331 DAGYVLTCQAYPLSDKLVVDY 351 (352)
T ss_pred hCCcEEEeeEEECCCcEEEec
Confidence 889999999999855688864
No 22
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.43 E-value=2.3e-13 Score=98.24 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=63.4
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCC-----CCCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACE-----KSCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~-----G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
|..|+|. .+|+.|++++|+|||+|++++|+++|+.|+ +.|.|+.|+|+| +|..
T Consensus 1 m~~v~i~------idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~~--------------- 58 (234)
T PRK07569 1 MSVKTLT------IDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGSN--------------- 58 (234)
T ss_pred CceEEEE------ECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCCC---------------
Confidence 7888888 699999999999999999999999999998 579999999999 3421
Q ss_pred cCCCCCCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 76 AWGLEENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+.+.||++.+. +||+|+....
T Consensus 59 ------~~~~aC~t~v~-~Gm~v~t~~~ 79 (234)
T PRK07569 59 ------KLLPACVTPVA-EGMVVQTNTP 79 (234)
T ss_pred ------ccccCcCCCCC-CCCEEEECCH
Confidence 33459999998 8999988644
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.35 E-value=1.7e-12 Score=80.00 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=48.9
Q ss_pred EEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCC---------CCCCCccEEEecCCcccCCCCCHHHHhhc
Q psy8859 3 QVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEK---------SCACATCHVIIREGFNEINKANEVEEDML 73 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G---------~G~CgtC~v~v~~g~~~l~~~~~~E~~~L 73 (109)
.|+|. -||+.+++++|+|||+|++++|+.+|+.|.. .|.|+.|.|.|. |.
T Consensus 3 ~v~i~------idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g~-------------- 61 (82)
T PF13510_consen 3 MVTIT------IDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-GE-------------- 61 (82)
T ss_dssp EEEEE------ETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-SE--------------
T ss_pred EEEEE------ECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-CC--------------
Confidence 47777 6999999999999999999999999999984 499999999995 31
Q ss_pred hhcCCCCCCeEEeeeeEeeCCCEEEEeC
Q psy8859 74 NKAWGLEENSRLSCQVILGSSDLTIEIP 101 (109)
Q Consensus 74 ~~~~~~~~~~rLaCq~~~~~~di~v~~~ 101 (109)
....||++.+. ++|+|+..
T Consensus 62 --------~~v~AC~t~v~-~GM~V~T~ 80 (82)
T PF13510_consen 62 --------PNVRACSTPVE-DGMVVETQ 80 (82)
T ss_dssp --------EEEETTT-B---TTEEEE--
T ss_pred --------cceEcccCCCc-CCcEEEEe
Confidence 12479999998 99999753
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.29 E-value=7.7e-12 Score=103.78 Aligned_cols=77 Identities=25% Similarity=0.266 Sum_probs=64.4
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
|++|+| +|+.+++++|+|||+|++++||.+|+.|.. .|.|+.|+|+|.+|..
T Consensus 1 ~~~i~i--------dg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~--------------- 57 (847)
T PRK08166 1 MATIHV--------DGKEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE--------------- 57 (847)
T ss_pred CeEEEE--------CCEEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc---------------
Confidence 666665 789999999999999999999999999983 5999999999998831
Q ss_pred cCCCCCCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 76 AWGLEENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+...+.++||++.+. ++|+|+....
T Consensus 58 --~~~~~~~~aC~~~v~-~gm~v~t~~~ 82 (847)
T PRK08166 58 --DTRGRLVMSCMTPAT-DGTFISIDDP 82 (847)
T ss_pred --cCCCCcccCcCCCCC-CCCEEEeCCH
Confidence 123467889999887 8999988653
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.09 E-value=1.8e-10 Score=85.32 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=59.8
Q ss_pred CEEEEEeCCccCCCCcEEEe-CCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 2 PQVIVLPHPVLCEDGAIFNE-NSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i~~-~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
|+|.+. .||+++++ ++|+|||+|++++||.||+.|.. .|.|+.|.|.| +|..
T Consensus 67 ~~~~I~------IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~~--------------- 124 (297)
T PTZ00305 67 PRAIMF------VNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGTQ--------------- 124 (297)
T ss_pred CceEEE------ECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCCc---------------
Confidence 677777 69999999 99999999999999999999984 48899999998 3421
Q ss_pred cCCCCCCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 76 AWGLEENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+..-||.+.+. ++|+|....+
T Consensus 125 ------~lv~AC~tpV~-eGM~V~T~Se 145 (297)
T PTZ00305 125 ------NLVVSCATVAL-PGMSIITDSR 145 (297)
T ss_pred ------CcccccCCcCC-CCCEEEeCCH
Confidence 12338999987 8999987543
No 26
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.91 E-value=2.8e-09 Score=86.58 Aligned_cols=74 Identities=23% Similarity=0.365 Sum_probs=62.2
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
|..|+|. .||+.+++++|+|||++++++|+.+|..|.. .|.|+.|.|+|. |..
T Consensus 1 ~~~v~~~------idg~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~-g~~--------------- 58 (652)
T PRK12814 1 MNTISLT------INGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIK-GKN--------------- 58 (652)
T ss_pred CCeEEEE------ECCEEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEEC-CCc---------------
Confidence 7788887 6999999999999999999999999999983 699999999883 420
Q ss_pred cCCCCCCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 76 AWGLEENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+..+||++.+. ++|+|+....
T Consensus 59 ------~~~~aC~t~~~-~Gm~v~t~~~ 79 (652)
T PRK12814 59 ------RFVPACSTAVS-EGMVIETENA 79 (652)
T ss_pred ------ceecCcCCCCC-CCCEEEeCcH
Confidence 13569999998 8999987544
No 27
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.90 E-value=2.8e-09 Score=87.16 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=58.9
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
|++|+| ||+++++++|+|||||++++||.||+.|.. .|.|+.|.|.|..+..
T Consensus 1 m~~~~I--------dg~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~--------------- 57 (687)
T PRK09130 1 MVKLKV--------DGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPP--------------- 57 (687)
T ss_pred CeEEEE--------CCEEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCC---------------
Confidence 666666 799999999999999999999999999983 6899999999963211
Q ss_pred cCCCCCCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 76 AWGLEENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
...-||.+.+. ++|+|.....
T Consensus 58 ------~~~~sC~~~v~-~gm~v~T~s~ 78 (687)
T PRK09130 58 ------KPVASCAMPVG-EGMVIFTNTP 78 (687)
T ss_pred ------CcccccCCCCC-CCCEEEeCCH
Confidence 11238999887 8999987543
No 28
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.90 E-value=3.2e-09 Score=86.58 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=58.3
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
|.+|++ ||++|+++.|+|||+|++++||+||+.|.. .|.|+.|.|.+..+.
T Consensus 1 m~tI~I--------DG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~---------------- 56 (693)
T COG1034 1 MVTITI--------DGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP---------------- 56 (693)
T ss_pred CeEEEE--------CCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------
Confidence 666666 899999999999999999999999999984 489999999987542
Q ss_pred cCCCCCCeEEeeeeEeeCCCEEEEeCC
Q psy8859 76 AWGLEENSRLSCQVILGSSDLTIEIPR 102 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di~v~~~~ 102 (109)
..+-||.+.++ +||+|....
T Consensus 57 ------k~~~SC~tpv~-dGM~I~T~s 76 (693)
T COG1034 57 ------KLVASCATPVT-DGMVISTNS 76 (693)
T ss_pred ------ccccccccccC-CCeEEecCC
Confidence 12238988777 899987754
No 29
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.79 E-value=1.3e-08 Score=84.62 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=53.6
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCC-----CCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeee
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACE-----KSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 88 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~-----G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq 88 (109)
-||+++++++|+|||+|++++||.+|+.|. ..|.|+.|.|.|. |. . .+||+
T Consensus 6 IdG~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~-G~----------------~-------~~AC~ 61 (819)
T PRK08493 6 INGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEAD-GK----------------R-------VYSCN 61 (819)
T ss_pred ECCEEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEEC-CE----------------E-------ecccc
Confidence 389999999999999999999999998774 3589999999983 41 0 45999
Q ss_pred eEeeCCCEEEEeCC
Q psy8859 89 VILGSSDLTIEIPR 102 (109)
Q Consensus 89 ~~~~~~di~v~~~~ 102 (109)
+.+. ++|+|+...
T Consensus 62 t~v~-dGM~V~T~s 74 (819)
T PRK08493 62 TKAK-EGMNILTNT 74 (819)
T ss_pred CCCC-CCCEEEecC
Confidence 9997 899998753
No 30
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.71 E-value=2.3e-08 Score=78.65 Aligned_cols=59 Identities=25% Similarity=0.468 Sum_probs=48.9
Q ss_pred EEEeCCCChHHHHHHh------CCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEe
Q psy8859 18 IFNENSGISLCDALLK------NSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVIL 91 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~------~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~ 91 (109)
++++++|+|||++|++ .++.++++|+ .|.||+|.|+| +|. .+|+|++.+
T Consensus 24 ~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~-----------------------~~laC~~~~ 78 (486)
T PRK06259 24 EVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE-----------------------PVLACKTEV 78 (486)
T ss_pred EEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe-----------------------EecccccCC
Confidence 4556699999999995 5666789999 89999999996 662 367999999
Q ss_pred eCCCEEEEeCC
Q psy8859 92 GSSDLTIEIPR 102 (109)
Q Consensus 92 ~~~di~v~~~~ 102 (109)
. ++++|+...
T Consensus 79 ~-~~~~i~~~~ 88 (486)
T PRK06259 79 E-DGMIIEPLD 88 (486)
T ss_pred C-CCCEEEecC
Confidence 8 889999764
No 31
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.69 E-value=4e-08 Score=81.57 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=55.0
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeee
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 88 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq 88 (109)
.||+++++++|+|||+|++++||.||+.|.. .|.|..|.|.|. |.. ..+-||.
T Consensus 9 idg~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~-g~~---------------------~~~~aC~ 66 (797)
T PRK07860 9 IDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVE-GQR---------------------KPQASCT 66 (797)
T ss_pred ECCEEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEEC-CCc---------------------ccccccC
Confidence 4899999999999999999999999999973 689999999993 321 1234899
Q ss_pred eEeeCCCEEEEeC
Q psy8859 89 VILGSSDLTIEIP 101 (109)
Q Consensus 89 ~~~~~~di~v~~~ 101 (109)
+.+. ++|+|+..
T Consensus 67 t~v~-~gm~V~t~ 78 (797)
T PRK07860 67 TTVT-DGMVVKTQ 78 (797)
T ss_pred CCCC-CCcEEEeC
Confidence 9998 89999875
No 32
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.67 E-value=5.2e-08 Score=80.46 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=54.4
Q ss_pred CCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeee
Q psy8859 15 DGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQV 89 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~ 89 (109)
||+++++++|+|||+|++++||.||+.|.. .|.|..|.|+|. |.. ..+.||.+
T Consensus 7 dg~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~-~~~---------------------~~~~aC~~ 64 (776)
T PRK09129 7 DGKKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVE-KAP---------------------KPLPACAT 64 (776)
T ss_pred CCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEEC-CCC---------------------CcCcccCC
Confidence 899999999999999999999999999984 489999999984 310 12458999
Q ss_pred EeeCCCEEEEeCC
Q psy8859 90 ILGSSDLTIEIPR 102 (109)
Q Consensus 90 ~~~~~di~v~~~~ 102 (109)
.+. ++|+|....
T Consensus 65 ~~~-~gm~v~t~~ 76 (776)
T PRK09129 65 PVT-DGMKVFTRS 76 (776)
T ss_pred CCC-CCCEEEcCC
Confidence 988 899988754
No 33
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.56 E-value=1.3e-07 Score=76.24 Aligned_cols=67 Identities=22% Similarity=0.358 Sum_probs=55.7
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCC-----CCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeee
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACE-----KSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 88 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~-----G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq 88 (109)
.||+++++++|+|||+|++++||.||+.|+ ..|.|..|.|.|. |.. . ....||+
T Consensus 3 idg~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~-g~~-----------------~---~~~~aC~ 61 (603)
T TIGR01973 3 IDGKELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVE-KFP-----------------D---KPVASCA 61 (603)
T ss_pred ECCEEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEEC-CCC-----------------C---CcccccC
Confidence 489999999999999999999999999997 3699999999984 321 0 1245999
Q ss_pred eEeeCCCEEEEeCC
Q psy8859 89 VILGSSDLTIEIPR 102 (109)
Q Consensus 89 ~~~~~~di~v~~~~ 102 (109)
+.+. ++|+|....
T Consensus 62 ~~~~-~gm~v~t~~ 74 (603)
T TIGR01973 62 TPVT-DGMKISTNS 74 (603)
T ss_pred CCCC-CCCEEEeCC
Confidence 9998 899998754
No 34
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.34 E-value=8.9e-07 Score=72.78 Aligned_cols=44 Identities=34% Similarity=0.559 Sum_probs=39.8
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREG 58 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g 58 (109)
.+|+.+++++|+|||+++.++||.+|+.|.- -++|.+|.|.+ +|
T Consensus 10 idg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG 58 (978)
T COG3383 10 IDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DG 58 (978)
T ss_pred ECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cC
Confidence 5899999999999999999999999999983 37899999994 56
No 35
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.16 E-value=5.7e-06 Score=56.76 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=40.9
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCC-CccccCCCCCCCCccEEEecCC
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi-~i~~~C~G~G~CgtC~v~v~~g 58 (109)
..|+|. .+|+ +++++++++||+.|++.|+ .....|+ .|.||.|.|.| +|
T Consensus 7 ~~i~~~------vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~-~G~CGACtVlv-dg 58 (159)
T PRK09908 7 ITIECT------INGMPFQLHAAPGTPLSELLREQGLLSVKQGCC-VGECGACTVLV-DG 58 (159)
T ss_pred eeEEEE------ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcC-CCCCCCcEEEE-CC
Confidence 357776 6786 5678899999999999887 4788999 89999999998 45
No 36
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.10 E-value=5.3e-06 Score=62.77 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=34.7
Q ss_pred EEEeCCCChHHHHHHhCCCCcc------ccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE------HACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~------~~C~G~G~CgtC~v~v~~g~ 59 (109)
+|++++|.|||++|.+.++.++ .+|+ .|.||+|.|+|- |.
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in-G~ 67 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN-GR 67 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC-Ce
Confidence 6788999999999999998874 4698 799999999994 54
No 37
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.03 E-value=4.2e-06 Score=60.81 Aligned_cols=40 Identities=25% Similarity=0.578 Sum_probs=31.8
Q ss_pred EEEeCCCChHHHHHHhCC------CCccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNS------IFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~g------i~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+|+++++.|+|++|..-. +...++|+ .|.||+|.++|- |.
T Consensus 27 ~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCGsCam~IN-G~ 72 (239)
T PRK13552 27 QLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICGSCAMVIN-GR 72 (239)
T ss_pred EecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCCCceeEEC-Ce
Confidence 466679999999997643 34568999 899999999984 53
No 38
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.02 E-value=1.4e-05 Score=57.35 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=39.2
Q ss_pred EEEEEeCCccCCCCc--EEEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEecCCc
Q psy8859 3 QVIVLPHPVLCEDGA--IFNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+|+|. .+|+ +++++++.|||++|+++ ++. ....|+ .|.||.|.|. ++|.
T Consensus 51 ~i~~~------VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-~G~CGACTVl-VdG~ 103 (217)
T PRK11433 51 PVTLK------VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-HGQCGACTVL-VNGR 103 (217)
T ss_pred eEEEE------ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-CCCcCceEEE-ECCE
Confidence 47776 5786 46889999999999985 543 678999 8999999994 4663
No 39
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.98 E-value=5.7e-06 Score=60.48 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=31.4
Q ss_pred EEEeCCCChHHHHHHhCC-------------CCccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNS-------------IFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~g-------------i~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+|++.++.|||++|..-. +...++|+ .|.||+|.++|- |.
T Consensus 26 ~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~IN-G~ 78 (249)
T PRK08640 26 EIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVIN-GK 78 (249)
T ss_pred EecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEEC-Cc
Confidence 456678999999997531 34568999 899999999985 53
No 40
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.88 E-value=3.4e-05 Score=52.39 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=35.4
Q ss_pred CCCc--EEEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 14 EDGA--IFNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
.+|+ +++++++++||+.+++. |+. ....|+ .|.||+|.|.|.
T Consensus 6 vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~-~G~CGACtVlvd 51 (148)
T TIGR03193 6 VNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCD-GGECGACTVLVD 51 (148)
T ss_pred ECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCC-CCCCCCCEEEEC
Confidence 4676 56788999999999985 764 778999 899999999983
No 41
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.82 E-value=3.7e-05 Score=49.77 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=29.6
Q ss_pred EEEeCCCChHHHHHHhC------CCCccccCCCCCCCCccEEEecCC
Q psy8859 18 IFNENSGISLCDALLKN------SIFIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~------gi~i~~~C~G~G~CgtC~v~v~~g 58 (109)
++++.++.|+|++|..- -+...++|+ .|.||+|.++|- |
T Consensus 22 ~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCGsCam~IN-G 66 (110)
T PF13085_consen 22 EVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICGSCAMRIN-G 66 (110)
T ss_dssp EEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSSTTEEEET-T
T ss_pred EecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCCCCEEEEC-C
Confidence 57888999999999652 345678999 899999999984 5
No 42
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.61 E-value=0.0002 Score=48.93 Aligned_cols=49 Identities=16% Similarity=0.417 Sum_probs=39.8
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
|..|+|. .+|. ++++.++++|++++++. |+. ..+.|+ .|.||.|.|.+-
T Consensus 1 ~~~i~lt------vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlvD 53 (156)
T COG2080 1 KMPITLT------VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLVD 53 (156)
T ss_pred CCcEEEE------ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEEC
Confidence 4567776 5776 67899999999999954 554 568999 899999999885
No 43
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.61 E-value=6.2e-05 Score=53.86 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=32.4
Q ss_pred EEEeCCCChHHHHHHhCC------CCccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNS------IFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~g------i~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
++++++|+|||+++.+.+ +...++|+ .|.||+|.|+| +|.
T Consensus 18 ~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~v-nG~ 63 (220)
T TIGR00384 18 EVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNV-NGK 63 (220)
T ss_pred EEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEE-CCE
Confidence 567779999999999865 23458998 89999999987 463
No 44
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.60 E-value=0.00017 Score=49.10 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=38.3
Q ss_pred EEEEEeCCccCCCCc--EEEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGA--IFNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
.|+|. -+|+ ++.+.++++|++.+++. |+. ....|+ .|.||.|.|.|.
T Consensus 3 ~i~f~------vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~-~G~CGACtVlvd 53 (151)
T TIGR03198 3 QFRFT------VNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCG-IGRCGACSVLID 53 (151)
T ss_pred cEEEE------ECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCC-CCcCCccEEEEC
Confidence 46676 5787 45677899999999985 775 678999 899999999994
No 45
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.49 E-value=0.00016 Score=53.04 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=33.7
Q ss_pred EEEeCCCChHHHHHHhCCC------CccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNSI------FIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi------~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+++++++.|||++|+.-+. ...++|+ .|.||+|.+.|- |.
T Consensus 23 ~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~In-G~ 68 (251)
T PRK12386 23 TVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEIN-GR 68 (251)
T ss_pred EEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCCCCEEEEC-cc
Confidence 5778899999999999664 4568999 899999999985 53
No 46
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.46 E-value=0.00012 Score=52.86 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=33.6
Q ss_pred cEEEeC-CCChHHHHHHhCC-CCc-----cccCCCCCCCCccEEEecCCc
Q psy8859 17 AIFNEN-SGISLCDALLKNS-IFI-----EHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 17 ~~i~~~-~g~tLl~a~~~~g-i~i-----~~~C~G~G~CgtC~v~v~~g~ 59 (109)
.+++++ +|+|||++|.+.+ ... .++|+ .|.||+|.|.| +|.
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~v-nG~ 67 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNI-NGK 67 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEE-CCc
Confidence 367788 9999999999998 333 47897 79999999999 464
No 47
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.34 E-value=0.00027 Score=52.45 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=33.8
Q ss_pred EEEeCCCChHHHHHHhCCCCc------cccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNSIFI------EHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v~~g~ 59 (109)
++++++|+|||++|.+.+..+ .++|+ .|.||+|.|.| +|.
T Consensus 28 ~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG~ 73 (279)
T PRK12576 28 KVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NGE 73 (279)
T ss_pred EEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CCc
Confidence 678899999999999977543 37898 89999999999 564
No 48
>KOG2282|consensus
Probab=97.25 E-value=0.00042 Score=55.39 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=40.4
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC-----CCCCCccEEEecCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREG 58 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G-----~G~CgtC~v~v~~g 58 (109)
.||+.+.+++|.|+|+|+...|++||-.|.. .|.|..|.|.|...
T Consensus 37 vd~~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclveveks 86 (708)
T KOG2282|consen 37 VDDQSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEKS 86 (708)
T ss_pred ECCeeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEeccC
Confidence 4788899999999999999999999999995 48999999998754
No 49
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.22 E-value=0.00033 Score=51.05 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=31.1
Q ss_pred EEEeCCCChHHHHHHhC------CCCccccCCCCCCCCccEEEecCC
Q psy8859 18 IFNENSGISLCDALLKN------SIFIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~------gi~i~~~C~G~G~CgtC~v~v~~g 58 (109)
.++++++.|||++|... .+...++|+ .|.||+|.|+|- |
T Consensus 28 ~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~In-G 72 (244)
T PRK12385 28 EVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-N 72 (244)
T ss_pred EeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCCCCcceEC-c
Confidence 46677999999999553 233457999 799999999996 5
No 50
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.13 E-value=0.00032 Score=51.35 Aligned_cols=37 Identities=22% Similarity=0.498 Sum_probs=29.5
Q ss_pred eCCCChHHHHHHhC----------CCCccccCCCCCCCCccEEEecCCc
Q psy8859 21 ENSGISLCDALLKN----------SIFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 21 ~~~g~tLl~a~~~~----------gi~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+.++.|+|++|..- .+...++|+ .|.||+|.++|- |.
T Consensus 27 ~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~IN-G~ 73 (250)
T PRK07570 27 ISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVIN-GR 73 (250)
T ss_pred CCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEEC-Cc
Confidence 44799999999742 255678999 899999999985 54
No 51
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=97.11 E-value=0.0011 Score=56.55 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=37.4
Q ss_pred EEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
+|+|. -+|+ +++++++++||+.|++.|+. ....|.+.|.||.|.|.|.
T Consensus 2 ~i~~~------vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~d 52 (956)
T PRK09800 2 IIHFT------LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFN 52 (956)
T ss_pred eEEEE------ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEEC
Confidence 47777 5776 56778999999999997765 4455333899999999983
No 52
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.96 E-value=0.0012 Score=52.36 Aligned_cols=42 Identities=19% Similarity=0.499 Sum_probs=35.0
Q ss_pred CCCc--EE-EeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 14 EDGA--IF-NENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 14 ~~g~--~i-~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
-+|+ ++ +++++++|++.++++ |+. ....|+ .|.||.|.|.|.
T Consensus 5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~-~G~CGaCtv~~~ 51 (467)
T TIGR02963 5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCA-EGDCGACTVVVG 51 (467)
T ss_pred ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccC-CCCCCceEEEEE
Confidence 4676 45 477999999999975 774 788999 899999999993
No 53
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=96.95 E-value=0.00096 Score=48.49 Aligned_cols=40 Identities=25% Similarity=0.504 Sum_probs=30.9
Q ss_pred EEEeCCCChHHHHHHhCC------CCccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNS------IFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~g------i~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+|+..+|.|+|++|..-. +.+.++|+ .|.||+|.+.|- |.
T Consensus 23 ev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~IN-G~ 68 (234)
T COG0479 23 EVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICGSCAMNIN-GK 68 (234)
T ss_pred EecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCCcceeEEC-Cc
Confidence 345559999999997532 33568999 899999999984 54
No 54
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=96.91 E-value=0.0016 Score=54.90 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=37.7
Q ss_pred CCCcEEEeCCCChHHHHHHh-CCC-CccccCCCCCCCCccEEEecCC
Q psy8859 14 EDGAIFNENSGISLCDALLK-NSI-FIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~-~gi-~i~~~C~G~G~CgtC~v~v~~g 58 (109)
-+|..++++++++||+.|++ .|+ .....|+ .|.||.|.|.| +|
T Consensus 5 ~ng~~~~~~~~~~l~~~lr~~~~~~~~k~gc~-~g~cgactv~~-dg 49 (848)
T TIGR03311 5 VNGREVDVNEEKKLLEFLREDLRLTGVKNGCG-EGACGACTVIV-NG 49 (848)
T ss_pred ECCEEeeCCCCCcHHHHHHHhcCCCcCCCCCC-CCCCCCcEEEE-CC
Confidence 47889999999999999997 487 4789999 89999999998 45
No 55
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=96.79 E-value=0.0022 Score=56.46 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=40.4
Q ss_pred CEEEEEeCCccCCCCcEE---EeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 2 PQVIVLPHPVLCEDGAIF---NENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i---~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
|.|+|. -+|+.+ .+++++|||+.|++. |+. ....|+ .|.||.|.|.|.
T Consensus 1 ~~~~~~------~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~-~G~CGaCtV~~~ 53 (1330)
T TIGR02969 1 PELLFY------VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCG-GGGCGACTVMIS 53 (1330)
T ss_pred CcEEEE------ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcC-CCCCCCcEEEEC
Confidence 568887 688754 688999999999975 764 778999 899999999996
No 56
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.75 E-value=0.0081 Score=51.44 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=56.0
Q ss_pred EEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCcc-----------ccCCCCCCCCccEEEecCCcccCCCCCHHHHh
Q psy8859 3 QVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIE-----------HACEKSCACATCHVIIREGFNEINKANEVEED 71 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~-----------~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~ 71 (109)
.|+|. -||+.+++.+|+||..||+.+|+.+. ..|. .|.|-.|.|.|-.|..
T Consensus 12 ~~~~~------~dg~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~----------- 73 (985)
T TIGR01372 12 PLRFT------FDGKSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQ----------- 73 (985)
T ss_pred eEEEE------ECCEEeecCCCCHHHHHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcC-----------
Confidence 57887 69999999999999999999998642 2576 5889999999965421
Q ss_pred hchhcCCCCCCeEEeeeeEeeCCCEEEEeCC
Q psy8859 72 MLNKAWGLEENSRLSCQVILGSSDLTIEIPR 102 (109)
Q Consensus 72 ~L~~~~~~~~~~rLaCq~~~~~~di~v~~~~ 102 (109)
...-+.||++.+. ++|+|+...
T Consensus 74 --------~~~~~~ac~~~~~-~gm~~~~~~ 95 (985)
T TIGR01372 74 --------REPNTRATTQELY-DGLVATSQN 95 (985)
T ss_pred --------CCCCccceeEEcc-cCCEEeccc
Confidence 0011349999998 899988754
No 57
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=96.65 E-value=0.0014 Score=48.75 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=29.8
Q ss_pred EEEeC--C-CChHHHHHHhCC------CCccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNEN--S-GISLCDALLKNS------IFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~--~-g~tLl~a~~~~g------i~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+++++ + |.|+|++|..-. +...++|+ .|.||+|.++|- |.
T Consensus 63 ~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~IN-G~ 111 (276)
T PLN00129 63 SYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNID-GK 111 (276)
T ss_pred EEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEEC-Cc
Confidence 45554 3 799999997622 33568999 899999999984 53
No 58
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.31 E-value=0.0052 Score=44.63 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEeC--C-CChHHHHHHhCC-----CCccccCCCCCCCCccEEEecCC
Q psy8859 18 IFNEN--S-GISLCDALLKNS-----IFIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 18 ~i~~~--~-g~tLl~a~~~~g-----i~i~~~C~G~G~CgtC~v~v~~g 58 (109)
+++++ + +.|+|++|..-. +...++|+ .|.||+|.++|- |
T Consensus 24 ~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCGsCa~~iN-G 70 (235)
T PRK12575 24 RYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICGSDAMNIN-G 70 (235)
T ss_pred EEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCCCCeeEEC-C
Confidence 45555 3 468999987632 23468999 899999999984 5
No 59
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=96.06 E-value=0.0093 Score=51.05 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred CCc--EEEeCCCChHHHHHHhCCCC-ccc-cCCCCCCCCccEEEec
Q psy8859 15 DGA--IFNENSGISLCDALLKNSIF-IEH-ACEKSCACATCHVIIR 56 (109)
Q Consensus 15 ~g~--~i~~~~g~tLl~a~~~~gi~-i~~-~C~G~G~CgtC~v~v~ 56 (109)
+|+ +++++++++||+.|++.|+. ... .|+ .|.||.|.|.|-
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~d 48 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILFN 48 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEEC
Confidence 554 67888999999999998775 555 576 899999999984
No 60
>PLN00192 aldehyde oxidase
Probab=95.89 E-value=0.015 Score=51.47 Aligned_cols=47 Identities=15% Similarity=0.428 Sum_probs=38.4
Q ss_pred EEEEEeCCccCCCCcE--E-EeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGAI--F-NENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~--i-~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
.|+|. .+|+. + .++++.|||+.|++. |+. ....|+ .|.||.|.|.|.
T Consensus 5 ~i~~~------vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 5 SLVFA------VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred eEEEE------ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCC-CCcCCCcEEEEe
Confidence 46776 57874 4 467999999999975 764 778999 899999999994
No 61
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.19 Score=39.30 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=37.3
Q ss_pred CEEEEEeCCccCCCCcEE---EeCCCChHHHHHH-hCCCC-ccccCCCCCCCCccEEEec
Q psy8859 2 PQVIVLPHPVLCEDGAIF---NENSGISLCDALL-KNSIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i---~~~~g~tLl~a~~-~~gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
-.|+|. .+|..+ .+++..||||-++ +.+.- -.-.|. .|-||.|.|.|-
T Consensus 7 ~~irf~------lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCA-EGDCGACTVlVg 59 (493)
T COG4630 7 NTIRFL------LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCA-EGDCGACTVLVG 59 (493)
T ss_pred ceeEEE------ecCceEEeecCCcchHHHHHHHHhccccccccccc-CCCcCceEEEEE
Confidence 467887 567643 5788999999998 56664 456898 899999999874
No 62
>PLN02906 xanthine dehydrogenase
Probab=90.05 E-value=0.36 Score=42.95 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=27.9
Q ss_pred CChHHHHHHhCCCC-ccccCCCCCCCCccEEEecC
Q psy8859 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIRE 57 (109)
Q Consensus 24 g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~ 57 (109)
++|||+.|++.|+. ....|+ .|.||.|.|.|..
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~-~g~CGaCtv~~~~ 34 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCG-EGGCGACTVMVSH 34 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcC-CCCCCCeEEEECC
Confidence 36899999986654 678999 8999999999973
No 63
>KOG0430|consensus
Probab=89.30 E-value=0.69 Score=40.64 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=34.0
Q ss_pred CCCcEE---EeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEecC
Q psy8859 14 EDGAIF---NENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIRE 57 (109)
Q Consensus 14 ~~g~~i---~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~~ 57 (109)
.+|+.+ .+++..||+..++++ ++- ....|+ .|.||.|.|.|..
T Consensus 7 VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~-EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 7 INGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCG-EGGCGACTVVLSK 54 (1257)
T ss_pred ECCEEeeEecCCcchhHHHHHHHhcCCcceeeccC-CCCccceEEEEec
Confidence 567644 368899999998775 443 678999 7999999999975
No 64
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.24 E-value=0.89 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.+++++|.||.+++.+.|++
T Consensus 6 NG~~~~~~~~~tl~~lL~~l~~~ 28 (66)
T PRK05659 6 NGEPRELPDGESVAALLAREGLA 28 (66)
T ss_pred CCeEEEcCCCCCHHHHHHhcCCC
Confidence 78999999999999999999875
No 65
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=88.76 E-value=0.33 Score=34.90 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=23.5
Q ss_pred hHHHHHHhCCCCc------cccCCCCCCCCccEEEecCC
Q psy8859 26 SLCDALLKNSIFI------EHACEKSCACATCHVIIREG 58 (109)
Q Consensus 26 tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v~~g 58 (109)
.+.+++.++|++. ...|+ .|.||+|.+.+..+
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~~ 232 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCG-IGACGACVCDTETG 232 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCc-CcccCcCCcccCCC
Confidence 4666777788763 24676 89999999986554
No 66
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=87.12 E-value=0.56 Score=33.34 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=23.3
Q ss_pred ChHHHHHHhCCCCc------cccCCCCCCCCccEEEec
Q psy8859 25 ISLCDALLKNSIFI------EHACEKSCACATCHVIIR 56 (109)
Q Consensus 25 ~tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v~ 56 (109)
+.+.+++++.|++. ...|+ .|.||+|.|...
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 35677788888842 13576 999999999975
No 67
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=85.83 E-value=0.56 Score=33.86 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=22.3
Q ss_pred ChHHHHHHhCCCC---cc-----ccCCCCCCCCccEEE
Q psy8859 25 ISLCDALLKNSIF---IE-----HACEKSCACATCHVI 54 (109)
Q Consensus 25 ~tLl~a~~~~gi~---i~-----~~C~G~G~CgtC~v~ 54 (109)
+.+.+++.+.|++ +- ..|.|.|.||+|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 3577788889986 32 334459999999987
No 68
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=85.77 E-value=0.81 Score=32.90 Aligned_cols=29 Identities=14% Similarity=0.246 Sum_probs=22.5
Q ss_pred hHHHHHHhCCCCcc------ccCCCCCCCCccEEEe
Q psy8859 26 SLCDALLKNSIFIE------HACEKSCACATCHVII 55 (109)
Q Consensus 26 tLl~a~~~~gi~i~------~~C~G~G~CgtC~v~v 55 (109)
.+.+.+.+.|++.. -.|+ .|.|+.|.++.
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 45667778898742 4677 99999999986
No 69
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=85.23 E-value=0.89 Score=32.68 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=24.0
Q ss_pred hHHHHHHhCCCCc------cccCCCCCCCCccEEEecC
Q psy8859 26 SLCDALLKNSIFI------EHACEKSCACATCHVIIRE 57 (109)
Q Consensus 26 tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v~~ 57 (109)
.+.+++++.|++. ...|+ .|.||.|++...+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCc-cceecccEEEeec
Confidence 5666778888873 24566 8999999999975
No 70
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=85.04 E-value=0.9 Score=24.01 Aligned_cols=17 Identities=41% Similarity=0.956 Sum_probs=14.1
Q ss_pred cCCCCCCCCccEEEecCC
Q psy8859 41 ACEKSCACATCHVIIREG 58 (109)
Q Consensus 41 ~C~G~G~CgtC~v~v~~g 58 (109)
.|+ .|.|+.|.+....+
T Consensus 5 ~CG-~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 5 ACG-VGACGGCVVPVKDG 21 (40)
T ss_dssp SSS-SSSS-TTEEECSST
T ss_pred cCC-CcEeCCcEeeeecC
Confidence 587 99999999999876
No 71
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=84.99 E-value=1.9 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.8
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACE 43 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~ 43 (109)
|+|...+++.|.|.+|+|..-+-.+...+-
T Consensus 6 pdG~~~~~~~g~T~~d~A~~I~~~l~~~~~ 35 (60)
T PF02824_consen 6 PDGSIKELPEGSTVLDVAYSIHSSLAKRAV 35 (60)
T ss_dssp TTSCEEEEETTBBHHHHHHHHSHHHHHCEE
T ss_pred CCCCeeeCCCCCCHHHHHHHHCHHHHhhee
Confidence 899999999999999999987655555444
No 72
>smart00455 RBD Raf-like Ras-binding domain.
Probab=83.03 E-value=1.7 Score=25.64 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.0
Q ss_pred CCCc--EEEeCCCChHHHHHHh
Q psy8859 14 EDGA--IFNENSGISLCDALLK 33 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~ 33 (109)
|+|+ .+.+++|+||.|++..
T Consensus 7 P~~~~~~V~vrpg~tl~e~L~~ 28 (70)
T smart00455 7 PDNQRTVVKVRPGKTVRDALAK 28 (70)
T ss_pred CCCCEEEEEECCCCCHHHHHHH
Confidence 7887 6899999999998754
No 73
>PRK07440 hypothetical protein; Provisional
Probab=82.09 E-value=3 Score=24.52 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCc
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
-+|+.++++.+.||.+.+.+.+++.
T Consensus 9 vNG~~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 9 VNGETRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ECCEEEEcCCCCCHHHHHHHcCCCC
Confidence 4789999999999999999888753
No 74
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=82.00 E-value=0.99 Score=33.34 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=25.7
Q ss_pred ChHHHHHHhCCCC---c------cccCCCCCCCCccEEEecCC
Q psy8859 25 ISLCDALLKNSIF---I------EHACEKSCACATCHVIIREG 58 (109)
Q Consensus 25 ~tLl~a~~~~gi~---i------~~~C~G~G~CgtC~v~v~~g 58 (109)
+.+.+.+.+.|++ + .-.|+ .|.|+.|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 4677778888885 2 24698 99999999997665
No 75
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=81.91 E-value=3.1 Score=24.79 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.1
Q ss_pred CCCc--EEEeCCCChHHHHHHh
Q psy8859 14 EDGA--IFNENSGISLCDALLK 33 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~ 33 (109)
|+|. .+.+.+|+|+.|++..
T Consensus 7 Png~~t~V~vrpg~ti~d~L~~ 28 (72)
T cd01760 7 PNGQRTVVPVRPGMSVRDVLAK 28 (72)
T ss_pred cCCCeEEEEECCCCCHHHHHHH
Confidence 7886 6899999999998765
No 76
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=81.15 E-value=4.3 Score=23.32 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=21.3
Q ss_pred CCcEEEeCCCChHHHHHHhCCCCc
Q psy8859 15 DGAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
+|+..+.+++.||.+.+...+++.
T Consensus 6 NG~~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 6 NEEQVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred CCEEEEcCCCCcHHHHHHHcCCCC
Confidence 788899999999999999998853
No 77
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=80.33 E-value=1.9 Score=31.74 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=22.5
Q ss_pred hHHHHHHhCCCCcc------ccCCCCCCCCccEEEec
Q psy8859 26 SLCDALLKNSIFIE------HACEKSCACATCHVIIR 56 (109)
Q Consensus 26 tLl~a~~~~gi~i~------~~C~G~G~CgtC~v~v~ 56 (109)
.+.+.+.+.|+++. -.|+ .|.|+.|.+...
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~~ 230 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTVG 230 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccCc-ccccceeEEEEC
Confidence 35677778888642 4686 999999999753
No 78
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=79.46 E-value=4.5 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.7
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.++++++.||.+++...+++
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhCCC
Confidence 78999999999999999988874
No 79
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=79.43 E-value=4.4 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=24.5
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
|+.+++. -+|+..+++++.||.+.+...+++
T Consensus 16 ~~~m~I~------VNG~~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITIS------INDQSIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEE------ECCeEEEcCCCCcHHHHHHHcCCC
Confidence 3445555 589999999999999999987764
No 80
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=79.05 E-value=4 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.3
Q ss_pred EEEeCCCChHHHHHHhCCCCc
Q psy8859 18 IFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i 38 (109)
.++++++.|+.+.+.+.+++.
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCC
Confidence 788899999999999998753
No 81
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=78.73 E-value=1.4 Score=31.97 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=19.6
Q ss_pred hHHHHHHhCCCCc--------cccCCCCCCCCccEEE
Q psy8859 26 SLCDALLKNSIFI--------EHACEKSCACATCHVI 54 (109)
Q Consensus 26 tLl~a~~~~gi~i--------~~~C~G~G~CgtC~v~ 54 (109)
.+.+.+.+.|++- ...|.|.|.||.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 3566677788852 1333349999999776
No 82
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=77.90 E-value=4.8 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCc
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
-+|+.++++++.|+.+.+.+.|++.
T Consensus 7 ~ng~~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 7 LNGKEVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred ECCEEEEcCCCCcHHHHHHHhCCCC
Confidence 3689999999999999999999865
No 83
>KOG3049|consensus
Probab=75.74 E-value=1.9 Score=31.41 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=25.9
Q ss_pred CCChHHHHHHhC--CCC----ccccCCCCCCCCccEEEecC
Q psy8859 23 SGISLCDALLKN--SIF----IEHACEKSCACATCHVIIRE 57 (109)
Q Consensus 23 ~g~tLl~a~~~~--gi~----i~~~C~G~G~CgtC~v~v~~ 57 (109)
-|--+|||+.+- ..+ ..-+|+ .|.||+|...|-.
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~G 114 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNING 114 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhh-ccccccceeccCC
Confidence 367899999764 333 346999 8999999998853
No 84
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=74.19 E-value=8.9 Score=21.96 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=20.8
Q ss_pred CCcEEEeCCCChHHHHHHhCCCCc
Q psy8859 15 DGAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
+|+.++++.+.||.+.+...++..
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 6 NDQPMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred CCeEEEcCCCCCHHHHHHHcCCCC
Confidence 789999999999999998877753
No 85
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=70.83 E-value=5.6 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCcEEEeCCCChHHHHHHhCCCCcc
Q psy8859 15 DGAIFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
+|+.++++.|.||.||+...|.+.+
T Consensus 7 nGeev~lp~gsTlrdalea~ga~y~ 31 (512)
T COG4070 7 NGEEVTLPAGSTLRDALEASGASYI 31 (512)
T ss_pred CCeEecCCCcchHHHHHHhcCCccc
Confidence 7899999999999999999998755
No 86
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=70.56 E-value=7.7 Score=22.79 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.3
Q ss_pred CCCc--EEEeCCCChHHHHHHh
Q psy8859 14 EDGA--IFNENSGISLCDALLK 33 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~ 33 (109)
|+|. .+.+.+|+|+.|++..
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSK 29 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHH
T ss_pred CCCCEEEEEEcCCCCHHHHHHH
Confidence 8887 5899999999998765
No 87
>PRK05802 hypothetical protein; Provisional
Probab=70.12 E-value=4.6 Score=30.46 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHHHHh--CCCCc------cccCCCCCCCCccEEEec
Q psy8859 27 LCDALLK--NSIFI------EHACEKSCACATCHVIIR 56 (109)
Q Consensus 27 Ll~a~~~--~gi~i------~~~C~G~G~CgtC~v~v~ 56 (109)
+.+.+.+ .+|++ .-.|| .|.||.|.+...
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 4455555 67765 23576 999999999964
No 88
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=69.21 E-value=4.4 Score=33.90 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=22.1
Q ss_pred hHHHHHHhCCCCc------cccCCCCCCCCccEEEe
Q psy8859 26 SLCDALLKNSIFI------EHACEKSCACATCHVII 55 (109)
Q Consensus 26 tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v 55 (109)
.+.+.+.+.|++. .-.|+ .|.|+.|.|..
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 3556777888875 34786 99999999964
No 89
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=69.07 E-value=5.5 Score=23.96 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.7
Q ss_pred CCC-c-EEEeCCCChHHHHHHhC
Q psy8859 14 EDG-A-IFNENSGISLCDALLKN 34 (109)
Q Consensus 14 ~~g-~-~i~~~~g~tLl~a~~~~ 34 (109)
|+. + .+++.+|+||-|++.++
T Consensus 7 PnqQrT~V~vrpG~tl~daL~Ka 29 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKA 29 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHH
Confidence 554 3 68999999999998664
No 90
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.71 E-value=7.2 Score=23.41 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCc--EEEeCCCChHHHHHHhCCCCccccCCCCCC-CCccEEEecCCc
Q psy8859 14 EDGA--IFNENSGISLCDALLKNSIFIEHACEKSCA-CATCHVIIREGF 59 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~-CgtC~v~v~~g~ 59 (109)
|||. .+.+.+|+||-|++.+. |.-.|. ...|.|.+..++
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kl-------lekRgl~~~~~~vf~~g~~ 48 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGL-------CEKRGINYAAVDLFLVGGD 48 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHH-------HHHcCCChhHEEEEEecCC
Confidence 7886 58999999998886543 221222 234567777443
No 91
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=68.53 E-value=12 Score=19.58 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=22.9
Q ss_pred EEEEeCCccCCCCcEEEe-CCCChHHHHHHhCCCCc
Q psy8859 4 VIVLPHPVLCEDGAIFNE-NSGISLCDALLKNSIFI 38 (109)
Q Consensus 4 V~~~~~~~~~~~g~~i~~-~~g~tLl~a~~~~gi~i 38 (109)
|++. -+|++..+ ....|+-++|.++||.+
T Consensus 2 Vtv~------~dG~~~~v~T~a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 2 VTVT------VDGKEKTVYTTASTVGDALKELGITL 31 (43)
T ss_pred EEEE------ECCEEEEEEeCCCCHHHHHHhCCCCC
Confidence 6676 58886555 45689999999999986
No 92
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=66.23 E-value=4 Score=29.70 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.3
Q ss_pred hHHHHHHhCCCCcc---------ccCCCCCCCCccEEE
Q psy8859 26 SLCDALLKNSIFIE---------HACEKSCACATCHVI 54 (109)
Q Consensus 26 tLl~a~~~~gi~i~---------~~C~G~G~CgtC~v~ 54 (109)
.+.+.+++.|++-. -.|+ .|.||+|++.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 45667778888621 2465 9999999976
No 93
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=65.64 E-value=8.4 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.6
Q ss_pred EEEeCCCChHHHHHHhCCCC
Q psy8859 18 IFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~ 37 (109)
++++++|.|+.+|+..+|+.
T Consensus 17 ~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 17 TLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEETT-BHHHHHHHHTHH
T ss_pred EEECCCcCcHHHHHHHcCch
Confidence 68999999999999999985
No 94
>PRK00969 hypothetical protein; Provisional
Probab=64.71 E-value=11 Score=30.54 Aligned_cols=34 Identities=26% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHAC 42 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C 42 (109)
|++|.+ +|..++++.|.||-|++..+|.+..-.+
T Consensus 1 ~m~V~v--------ng~~~~v~~g~Tl~Dal~~s~~~y~~g~ 34 (508)
T PRK00969 1 MMSVKV--------NGEEVTVPEGSTLKDALKASGAPYIEGT 34 (508)
T ss_pred CeEEEE--------CCEEeecCCCCcHHHHHhhcCCCcCCCC
Confidence 566666 7899999999999999999988765443
No 95
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=64.55 E-value=18 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=19.6
Q ss_pred EEEeCCCChHHHHHHhCCCCcc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
...+..+.||-+.+++.|||..
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~t 47 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHT 47 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChH
Confidence 5688899999999999999865
No 96
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=61.05 E-value=13 Score=21.02 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
-+|+.++.+.+.||.+.+...+++
T Consensus 3 iNg~~~~~~~~~tv~~ll~~l~~~ 26 (64)
T TIGR01683 3 VNGEPVEVEDGLTLAALLESLGLD 26 (64)
T ss_pred ECCeEEEcCCCCcHHHHHHHcCCC
Confidence 378999999999999999999876
No 97
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=60.29 E-value=10 Score=22.93 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=21.0
Q ss_pred CCCc--EEEeCCCChHHHHHH----hCCCCccccCC
Q psy8859 14 EDGA--IFNENSGISLCDALL----KNSIFIEHACE 43 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~----~~gi~i~~~C~ 43 (109)
|+|+ ++.+++|.|++|.+. +.|++-..-|-
T Consensus 7 Pn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 7 PDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 7776 688999999999865 35555444443
No 98
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=60.05 E-value=19 Score=21.19 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=19.5
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
|.+|+|.+ ..|+ .+++++..|+.+.
T Consensus 1 ~~~i~vkt-----~~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 1 MIEVVCND-----RLGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred CEEEEEEC-----CCCCEEEEEeCCCCcHHHH
Confidence 78999986 5676 4578888888775
No 99
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=59.26 E-value=25 Score=20.26 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=19.8
Q ss_pred CCcEEEeCCC-ChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSG-ISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g-~tLl~a~~~~gi~ 37 (109)
+|+..+++.+ .||.+.+...+++
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~~~ 29 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLELD 29 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcCCC
Confidence 7888999988 6899999988875
No 100
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=58.63 E-value=8.4 Score=33.65 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=21.2
Q ss_pred hHHHHHHhCCCCc------cccCCCCCCCCccEEEec
Q psy8859 26 SLCDALLKNSIFI------EHACEKSCACATCHVIIR 56 (109)
Q Consensus 26 tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v~ 56 (109)
.+.+.++..||+. ...|+ .|.||.|+|.+-
T Consensus 195 av~~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~~ 230 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTVG 230 (1006)
T ss_pred HHHHHHHHCCCcEEECChhheeCc-cceeCCCEeeeC
Confidence 3445566778842 24676 999999999753
No 101
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=58.56 E-value=9.6 Score=21.26 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=18.7
Q ss_pred cEEEeCCCChHHHHHHhCCCCccc
Q psy8859 17 AIFNENSGISLCDALLKNSIFIEH 40 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi~i~~ 40 (109)
-.++++.|.||.|++..+|-..+.
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEEECCCCcHHHHHHHhCCCCCC
Confidence 378999999999999998765544
No 102
>PRK01777 hypothetical protein; Validated
Probab=57.17 E-value=14 Score=23.17 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=19.6
Q ss_pred EEEeCCCChHHHHHHhCCCCcc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
.+++++|.|+.|++...||...
T Consensus 20 ~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 20 RLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEcCCCCcHHHHHHHcCCCcc
Confidence 6889999999999999999644
No 103
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=57.02 E-value=6 Score=28.11 Aligned_cols=16 Identities=19% Similarity=0.659 Sum_probs=13.2
Q ss_pred ccCCCCCCCCccEEEec
Q psy8859 40 HACEKSCACATCHVIIR 56 (109)
Q Consensus 40 ~~C~G~G~CgtC~v~v~ 56 (109)
-.|+ .|.||+|.+...
T Consensus 214 m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 214 MCCG-IGICGACTIETK 229 (243)
T ss_pred ccCc-cccccceEEEeC
Confidence 4677 899999999854
No 104
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=54.16 E-value=8.4 Score=28.33 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=17.8
Q ss_pred hHHHHHHhCCCCccccCCC
Q psy8859 26 SLCDALLKNSIFIEHACEK 44 (109)
Q Consensus 26 tLl~a~~~~gi~i~~~C~G 44 (109)
-|+++|++.|+||...|+|
T Consensus 98 aLi~~ALe~~iPILgICRG 116 (243)
T COG2071 98 ALIRAALERGIPILGICRG 116 (243)
T ss_pred HHHHHHHHcCCCEEEEccc
Confidence 5899999999999999997
No 105
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=54.12 E-value=18 Score=19.52 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCc
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
++|..++++.|.|+.+.+...+..+
T Consensus 6 ~~g~~~~~~~~~t~~~~~~~~~~~~ 30 (60)
T cd01668 6 PKGEIIELPAGATVLDFAYAIHTEI 30 (60)
T ss_pred CCCCEEEcCCCCCHHHHHHHHChHh
Confidence 7899999999999999887655443
No 106
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=53.12 E-value=12 Score=32.49 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.2
Q ss_pred hHHHHHHhCCCCc------cccCCCCCCCCccEEEe
Q psy8859 26 SLCDALLKNSIFI------EHACEKSCACATCHVII 55 (109)
Q Consensus 26 tLl~a~~~~gi~i------~~~C~G~G~CgtC~v~v 55 (109)
.+.+.+.+.|++. ...|+ .|.|+.|.|.+
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~ 895 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVDA-TGMCGACMVPV 895 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccCC-CeeeCeeeeee
Confidence 3566677888874 25787 99999999975
No 107
>PRK13669 hypothetical protein; Provisional
Probab=51.58 E-value=8.5 Score=23.39 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHh-CCCC-ccccCCCCCCCCccEEE---ecCCcccCCCCCHH
Q psy8859 28 CDALLK-NSIF-IEHACEKSCACATCHVI---IREGFNEINKANEV 68 (109)
Q Consensus 28 l~a~~~-~gi~-i~~~C~G~G~CgtC~v~---v~~g~~~l~~~~~~ 68 (109)
.+.+++ -+++ +.+.|- +.||.|+.+ ++.|+. +...+++
T Consensus 20 ~~~Le~dP~~dVie~gCl--s~CG~C~~~~FAlVng~~-V~a~t~e 62 (78)
T PRK13669 20 FEKLEKDPNLDVLEYGCL--GYCGICSEGLFALVNGEV-VEGETPE 62 (78)
T ss_pred HHHHHhCCCceEEEcchh--hhCcCcccCceEEECCeE-eecCCHH
Confidence 444432 3455 679997 689999866 567753 3334443
No 108
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=48.64 E-value=22 Score=17.99 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=13.2
Q ss_pred EeCCCChHHHHHHhCCCCcc
Q psy8859 20 NENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 20 ~~~~g~tLl~a~~~~gi~i~ 39 (109)
.+.+|+|+-..+.+.|+.+.
T Consensus 2 ~V~~gDtl~~IA~~~~~~~~ 21 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISVD 21 (44)
T ss_dssp EE-TT--HHHHHHHTTS-HH
T ss_pred EECcCCcHHHHHhhhhhhHh
Confidence 57889999999999988643
No 109
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=46.54 E-value=20 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.6
Q ss_pred cEEEeCCCChHHHHHHhCCCCccc
Q psy8859 17 AIFNENSGISLCDALLKNSIFIEH 40 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi~i~~ 40 (109)
+++.++.|.||.+..+++++++..
T Consensus 160 qsy~V~~G~TLaQlFRdn~LpitD 183 (242)
T COG3061 160 QSYTVPQGKTLAQLFRDNNLPITD 183 (242)
T ss_pred eeEEecCCccHHHHHhccCCChHH
Confidence 489999999999999999998753
No 110
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=46.28 E-value=29 Score=19.54 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.1
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
-+|+.++++.+.|+.+.+.+.+++
T Consensus 4 iNg~~~~~~~~~tv~~ll~~l~~~ 27 (65)
T cd00565 4 VNGEPREVEEGATLAELLEELGLD 27 (65)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCCC
Confidence 378899999999999999999875
No 111
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=46.10 E-value=20 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=20.4
Q ss_pred ChHHHHHHhCCCCc--cccCCC--CCCCCccE
Q psy8859 25 ISLCDALLKNSIFI--EHACEK--SCACATCH 52 (109)
Q Consensus 25 ~tLl~a~~~~gi~i--~~~C~G--~G~CgtC~ 52 (109)
.-|++.+.+.|+++ .++|.- ...||+|.
T Consensus 127 ~ei~~~~~~~g~~~~~s~sC~~~~~~~CG~C~ 158 (169)
T cd01995 127 AEIVRLGGELGVPLELTWSCYNGGEKHCGECD 158 (169)
T ss_pred HHHHHHHhHcCCChhheeeccCCCCCCCCCCH
Confidence 46788889999975 479983 23588884
No 112
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=45.99 E-value=23 Score=21.55 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=13.4
Q ss_pred EEEeCCCChHHHHHHhCCCCc
Q psy8859 18 IFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i 38 (109)
++.++.|+||-.+..+.|++.
T Consensus 4 ~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 4 EYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp EEE--TT--HHHHHHHTT--H
T ss_pred EEEECCCCcHHHHHHHcCCCH
Confidence 678999999999999999974
No 113
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=45.96 E-value=15 Score=18.25 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=14.4
Q ss_pred eCCCChHHHHHHhCCCCcc
Q psy8859 21 ENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 21 ~~~g~tLl~a~~~~gi~i~ 39 (109)
+.+|+||.+.+.+.|+.+.
T Consensus 1 v~~gdtl~~IA~~~~~~~~ 19 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFD 19 (44)
T ss_pred CCCCCCHHHHHHHHCcCHH
Confidence 3578899999988877643
No 114
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=44.46 E-value=32 Score=16.34 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=16.4
Q ss_pred EEEeCCCChHHHHHHhCCCCc
Q psy8859 18 IFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i 38 (109)
.+.+..|+|+-..+.+.++..
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 356788899999888887764
No 115
>PRK06437 hypothetical protein; Provisional
Probab=44.34 E-value=51 Score=18.92 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=19.0
Q ss_pred cEEEeCCCChHHHHHHhCCCC
Q psy8859 17 AIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi~ 37 (109)
++++++++.|+.+.+.+.|++
T Consensus 13 ~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 13 KTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred eEEEcCCCCcHHHHHHHcCCC
Confidence 679999999999999999885
No 116
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=43.12 E-value=33 Score=28.14 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSI 36 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi 36 (109)
|.+|++ ++|..++++.|.|+++.+.+..-
T Consensus 1 ~~~i~~-------~~g~~~~~~~gtt~~dia~~~~~ 29 (638)
T PRK00413 1 MIKITL-------PDGSVREFEAGVTVADVAASISP 29 (638)
T ss_pred CcEEEe-------CCCCEEEeCCCCCHHHHHHHhhh
Confidence 667777 57888889999999999987544
No 117
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=42.65 E-value=51 Score=17.13 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=17.1
Q ss_pred CCCcEEEeCCCChHHHHHHhC
Q psy8859 14 EDGAIFNENSGISLCDALLKN 34 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~ 34 (109)
++|..+.++.|.|+.+.+...
T Consensus 6 ~~~~~~~~~~~~t~~~~~~~~ 26 (61)
T cd01667 6 PDGSVKEFPKGTTPLDIAKSI 26 (61)
T ss_pred CCCCEEEeCCCCCHHHHHHHH
Confidence 567778889999999977764
No 118
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=42.15 E-value=17 Score=19.98 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=11.4
Q ss_pred cccCCCCCCCCccEEEec
Q psy8859 39 EHACEKSCACATCHVIIR 56 (109)
Q Consensus 39 ~~~C~G~G~CgtC~v~v~ 56 (109)
|..|-|+| |..|.-.+-
T Consensus 15 p~~CCgSG-C~~CVwd~Y 31 (48)
T PF09791_consen 15 PDECCGSG-CAPCVWDVY 31 (48)
T ss_pred cccccccC-CccchhHHH
Confidence 35677666 988865544
No 119
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=40.95 E-value=17 Score=25.74 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHhCCCCc--cccCCCCC-----CCCccE
Q psy8859 27 LCDALLKNSIFI--EHACEKSC-----ACATCH 52 (109)
Q Consensus 27 Ll~a~~~~gi~i--~~~C~G~G-----~CgtC~ 52 (109)
++..+.+.|+++ -++|. .| .||+|.
T Consensus 166 iv~~~~~lg~~~~~T~SCy-~~~~~~~~CG~C~ 197 (209)
T PF06508_consen 166 IVKLGVELGVPLELTWSCY-RGGEKGKHCGRCP 197 (209)
T ss_dssp HHHHHHHTTHHHHH-B-ST-TS--BTTTTSSSH
T ss_pred HHHHHHHcCCCHHHccCCC-CCCCCCCCCCCCH
Confidence 455567778654 58998 55 688774
No 120
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=38.95 E-value=28 Score=25.20 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=17.4
Q ss_pred hHHHHHHhCC-CCc----cccCCCCC----CCCccE
Q psy8859 26 SLCDALLKNS-IFI----EHACEKSC----ACATCH 52 (109)
Q Consensus 26 tLl~a~~~~g-i~i----~~~C~G~G----~CgtC~ 52 (109)
-|.+.+.+.| +++ -++|. .| .||+|.
T Consensus 167 eI~~l~~~lg~v~~~~~~T~SCy-~g~~g~~CG~C~ 201 (231)
T PRK11106 167 ETWALADYYGQLDLVRHETLTCY-NGIKGDGCGHCA 201 (231)
T ss_pred HHHHHHHHcCCcccccCceeecc-CcCCCCCCCCCH
Confidence 4667778888 654 47898 43 566664
No 121
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=37.52 E-value=36 Score=23.50 Aligned_cols=27 Identities=11% Similarity=0.377 Sum_probs=18.4
Q ss_pred hHHHHHHhCC---CC--ccccCCCCC--CCCccE
Q psy8859 26 SLCDALLKNS---IF--IEHACEKSC--ACATCH 52 (109)
Q Consensus 26 tLl~a~~~~g---i~--i~~~C~G~G--~CgtC~ 52 (109)
-|++.+++.| ++ ..++|.-.+ .||.|.
T Consensus 163 eI~~la~~~g~~~~~~~~t~sC~~~~~~~CG~C~ 196 (201)
T TIGR00364 163 EIVQLADELGVLDLVIKLTYSCYAGGGEGCGKCP 196 (201)
T ss_pred HHHHHHHHcCCccccHhhCCcCCCcCCCCCCCCh
Confidence 5778888999 64 457898322 577773
No 122
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=36.92 E-value=63 Score=16.57 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.7
Q ss_pred CCCcEEEeCCCChHHHHHHhCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSI 36 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi 36 (109)
++|..++++.|.|+.+.+.+...
T Consensus 6 ~~~~~~~~~~g~t~~~~~~~~~~ 28 (60)
T cd01616 6 PDGSAVELPKGATAMDFALKIHT 28 (60)
T ss_pred CCCCEEEcCCCCCHHHHHHHHHH
Confidence 46788899999999998876644
No 123
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=36.91 E-value=67 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=18.7
Q ss_pred EEEEEeCCccCCCCc-EEEeCCCChHHHHHHh
Q psy8859 3 QVIVLPHPVLCEDGA-IFNENSGISLCDALLK 33 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~-~i~~~~g~tLl~a~~~ 33 (109)
.|+|.. ++|. +|++++..|+-+....
T Consensus 6 ilRvrS-----~dG~~Rie~~~~~t~~~L~~k 32 (80)
T PF11543_consen 6 ILRVRS-----KDGMKRIEVSPSSTLSDLKEK 32 (80)
T ss_dssp EEEEE------SSEEEEEEE-TTSBHHHHHHH
T ss_pred EEEEEC-----CCCCEEEEcCCcccHHHHHHH
Confidence 578886 7885 8999999998776543
No 124
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=36.30 E-value=77 Score=18.53 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=18.0
Q ss_pred CC-EEEEEeCCccCCCCcE--EEeCCCChHHHH
Q psy8859 1 MP-QVIVLPHPVLCEDGAI--FNENSGISLCDA 30 (109)
Q Consensus 1 M~-~V~~~~~~~~~~~g~~--i~~~~g~tLl~a 30 (109)
|+ +|+|.+ ..|++ +++++..|+-+.
T Consensus 1 ~~~~i~Vk~-----~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 1 MGWDLKVKM-----LGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred CceEEEEEe-----CCCCEEEEEcCCCCcHHHH
Confidence 55 788886 67775 456788888764
No 125
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.09 E-value=46 Score=19.81 Aligned_cols=22 Identities=0% Similarity=0.120 Sum_probs=18.6
Q ss_pred EEEeCCCChHHHHHHhCCCCcc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
.++++.-+.+.++++++|++..
T Consensus 51 ly~Ap~~eaV~~~~~~aG~p~d 72 (77)
T PF14026_consen 51 LYEAPDEEAVREHARRAGLPAD 72 (77)
T ss_pred EEECCCHHHHHHHHHHcCCCcc
Confidence 3577888999999999999864
No 126
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=35.96 E-value=68 Score=21.80 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=25.0
Q ss_pred EEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCc
Q psy8859 3 QVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
-|+|. .+.-.+.+..|++-|.|+...|+.+
T Consensus 65 LvRfv------~~~mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 65 LVRFV------GDTMWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp EEEEE------TTCEEEEESSCHHHHHHHHGCCSEE
T ss_pred EEEEe------CCeEEEEECccHHHHHHHccCCcEE
Confidence 36776 3455899999999999999999877
No 127
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=35.06 E-value=17 Score=23.04 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=10.0
Q ss_pred CCCCccEEEecC
Q psy8859 46 CACATCHVIIRE 57 (109)
Q Consensus 46 G~CgtC~v~v~~ 57 (109)
-.||||+|.-..
T Consensus 68 lECGTCRvlc~~ 79 (99)
T COG2440 68 LECGTCRVLCPH 79 (99)
T ss_pred eeccceeEecCC
Confidence 479999998776
No 128
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=34.80 E-value=56 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNS 35 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~g 35 (109)
|.+|++ ++|...+++.|.|+.+.+.+..
T Consensus 5 mi~i~~-------~~~~~~~~~~g~t~~~ia~~~~ 32 (639)
T PRK12444 5 MIEIKF-------PDGSVKEFVKGITLEEIAGSIS 32 (639)
T ss_pred CeEEEe-------CCCCEEEecCCCCHHHHHHHhh
Confidence 556666 5788888999999999998753
No 129
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=34.56 E-value=88 Score=17.51 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=17.3
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.+++ +..||.+.+...+++
T Consensus 6 Ng~~~~~-~~~tl~~Ll~~l~~~ 27 (65)
T PRK06488 6 NGETLQT-EATTLALLLAELDYE 27 (65)
T ss_pred CCeEEEc-CcCcHHHHHHHcCCC
Confidence 6788888 457999999888764
No 130
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=34.01 E-value=33 Score=19.90 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=12.5
Q ss_pred CCCc--EEEeCCCChHHHHHHhC
Q psy8859 14 EDGA--IFNENSGISLCDALLKN 34 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~ 34 (109)
++++ +|.+.++.+|.|++.++
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~ea 26 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEA 26 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHH
T ss_pred cCCcEEEEEECCCCCHHHHHHHH
Confidence 5665 67889999888876653
No 131
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=33.50 E-value=42 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK 44 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G 44 (109)
|.|..+..+.|.|.||.|-+-.-.+-+.|.|
T Consensus 393 P~G~v~~LP~GaT~lDFAY~iHt~iG~~c~g 423 (702)
T PRK11092 393 PEGRIVELPAGATPVDFAYAVHTDIGHACVG 423 (702)
T ss_pred CCCCEEeCCCCCchhhhhHhhCchhhceeEE
Confidence 8999999999999999999988889888886
No 132
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.24 E-value=78 Score=24.37 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.++++++.||.+.+...+++
T Consensus 6 NGk~~el~e~~TL~dLL~~L~i~ 28 (326)
T PRK11840 6 NGEPRQVPAGLTIAALLAELGLA 28 (326)
T ss_pred CCEEEecCCCCcHHHHHHHcCCC
Confidence 78899999999999999998886
No 133
>smart00257 LysM Lysin motif.
Probab=32.84 E-value=51 Score=15.31 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=14.8
Q ss_pred EEeCCCChHHHHHHhCCCCc
Q psy8859 19 FNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 19 i~~~~g~tLl~a~~~~gi~i 38 (109)
+.+.+|+|+-..+.+.++..
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 45778888888888777653
No 134
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.10 E-value=39 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.721 Sum_probs=13.8
Q ss_pred hHHHHHHhCCCC----ccccCCCCCCCCccE
Q psy8859 26 SLCDALLKNSIF----IEHACEKSCACATCH 52 (109)
Q Consensus 26 tLl~a~~~~gi~----i~~~C~G~G~CgtC~ 52 (109)
.+|+.+.+.|.- ....| .|.|+.|.
T Consensus 33 ~mL~~l~~kG~I~~~~~~~~~--~~~C~~C~ 61 (69)
T PF09012_consen 33 AMLEQLIRKGYIRKVDMSSCC--GGSCSSCG 61 (69)
T ss_dssp HHHHHHHCCTSCEEEEEE--S--SSSSSS-S
T ss_pred HHHHHHHHCCcEEEecCCCCC--CCCCCCCC
Confidence 466667777752 22344 47898885
No 135
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=28.71 E-value=46 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=27.9
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK 44 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G 44 (109)
|.|..+.++.|.|.+|.|.+-.-++-+.|.|
T Consensus 411 PkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~g 441 (743)
T PRK10872 411 PKGDVVDLPAGSTPLDFAYHIHSDVGHRCIG 441 (743)
T ss_pred CCCCeEEcCCCCcHHHHHHHHhHHHHhhceE
Confidence 8999999999999999999877778888885
No 136
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=27.45 E-value=46 Score=19.02 Aligned_cols=17 Identities=47% Similarity=0.577 Sum_probs=12.7
Q ss_pred CChHHHHHHhCCCCcccc
Q psy8859 24 GISLCDALLKNSIFIEHA 41 (109)
Q Consensus 24 g~tLl~a~~~~gi~i~~~ 41 (109)
|+|+++++.+++ .+...
T Consensus 1 G~t~~d~L~~~~-~v~~~ 17 (68)
T PF14478_consen 1 GSTLLDALKKNG-KVETS 17 (68)
T ss_dssp T-BHHHHHHHCT--EEEE
T ss_pred CccHHHHHHhcC-CeEEe
Confidence 689999999988 77665
No 137
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=26.47 E-value=1.4e+02 Score=21.40 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=40.3
Q ss_pred ChHHHHHHhCCCCccccCCCCCCCCccEEE--ecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEee
Q psy8859 25 ISLCDALLKNSIFIEHACEKSCACATCHVI--IREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILG 92 (109)
Q Consensus 25 ~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~--v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~ 92 (109)
+-+.+++.+.|++++....+.-.||.|... ...|.. .......|.. .....+..|-+.+++.
T Consensus 154 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r-----~s~~~~~L~~-a~~~~n~~l~~~~~V~ 217 (296)
T PF00732_consen 154 QALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGAR-----SSAATTYLPP-ALKRPNLTLLTNARVT 217 (296)
T ss_dssp HHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCB-----BHHHHHHHHH-HTTTTTEEEEESEEEE
T ss_pred HHHHHHHHHcCCccccccccccccccccccccccchhc-----eehhhcccch-hhccCCccEEcCcEEE
Confidence 567888999999876655544678888777 555532 1223455652 2345588888888776
No 138
>COG1683 Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=65 Score=22.16 Aligned_cols=34 Identities=18% Similarity=-0.086 Sum_probs=27.4
Q ss_pred ChHHHHHHhCCCCccccCCCCCCCCccEEEecCC
Q psy8859 25 ISLCDALLKNSIFIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 25 ~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g 58 (109)
+.-|+.+.++++..--.|..+-+||+..|++-+.
T Consensus 89 ~~~L~~a~~~~~~~aILk~kSPSCG~~~vydg~f 122 (156)
T COG1683 89 ERTLALAKEAGIDGAILKEKSPSCGSGFVYDGSF 122 (156)
T ss_pred HHHHHHhhhcCCcEEEEecCCCCCCceeeEeecc
Confidence 3567777788888877888889999999998653
No 139
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=25.90 E-value=54 Score=18.83 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=19.4
Q ss_pred ChHHHHHHhCCCC----ccccCCCCCCCCccEEEec
Q psy8859 25 ISLCDALLKNSIF----IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 25 ~tLl~a~~~~gi~----i~~~C~G~G~CgtC~v~v~ 56 (109)
..|.+++.++|.. +....+=...||+|+-.+.
T Consensus 12 ~~I~~ai~~~g~~s~~~l~~~~~~g~~CG~C~~~i~ 47 (64)
T PRK10509 12 KKIRQAVRQFHPQSFQQLRKFVPVGNQCGKCIRAAR 47 (64)
T ss_pred HHHHHHHHHcCCCCHHHHHHhcCCCCCccchHHHHH
Confidence 4677777776753 3333332367999976554
No 140
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=25.79 E-value=50 Score=23.47 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=14.9
Q ss_pred ChHHHHHHhCCCCcccc
Q psy8859 25 ISLCDALLKNSIFIEHA 41 (109)
Q Consensus 25 ~tLl~a~~~~gi~i~~~ 41 (109)
.-++++|+++|+.+|++
T Consensus 117 ~A~akgArd~GL~fPh~ 133 (193)
T PRK08569 117 FAALKGAIDAGLEIPHG 133 (193)
T ss_pred HHHHHHHHHcCCcCCCC
Confidence 36889999999999986
No 141
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.76 E-value=51 Score=22.48 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=36.0
Q ss_pred cccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEeeCCC-EEEEeCCCCccc
Q psy8859 39 EHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSSD-LTIEIPRYTINQ 107 (109)
Q Consensus 39 ~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~~~~d-i~v~~~~~~~~~ 107 (109)
.-.|.-+..||+|..+-.-|...+ .+ |. ..-+..+++-|-..+..++ ++|.+++.+..+
T Consensus 17 ~V~c~~~S~CgsC~a~~~CGs~~l-------~k-Lg--~~~~h~~~~~t~~pL~~Gq~VeiGi~EkslL~ 76 (150)
T COG3086 17 KVSCQRQSACGSCAARAGCGSGLL-------SK-LG--PQTEHIFRVETDEPLEPGQKVELGIEEKSLLK 76 (150)
T ss_pred EEEeeccCccccchhhcccchHHH-------HH-hc--cccceEEEEecCCcCCCCCEEEEccCcccHHH
Confidence 446776789999999887774321 11 22 1222446667766666444 567788776543
No 142
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=25.73 E-value=36 Score=18.74 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=11.8
Q ss_pred CCCCCccEEEecCC
Q psy8859 45 SCACATCHVIIREG 58 (109)
Q Consensus 45 ~G~CgtC~v~v~~g 58 (109)
.|.|+-|++.|...
T Consensus 22 ~~~C~gC~~~l~~~ 35 (56)
T PF02591_consen 22 GGTCSGCHMELPPQ 35 (56)
T ss_pred CCccCCCCEEcCHH
Confidence 37999999999865
No 143
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.39 E-value=74 Score=20.16 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEeCCCChHHHHHHhCCCC
Q psy8859 18 IFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~ 37 (109)
++.+..|.|+-+|.+.+|+.
T Consensus 20 ~v~v~egatV~dAi~~Sgll 39 (99)
T COG2914 20 RVQLQEGATVEDAILASGLL 39 (99)
T ss_pred EEEeccCcCHHHHHHhcchh
Confidence 78999999999999999985
No 144
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=23.78 E-value=61 Score=20.73 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=11.4
Q ss_pred eCCCChHHHHHHh
Q psy8859 21 ENSGISLCDALLK 33 (109)
Q Consensus 21 ~~~g~tLl~a~~~ 33 (109)
+++|+|+.+||.|
T Consensus 35 ve~gEt~~eaa~R 47 (132)
T cd04661 35 REEGETLRQTAER 47 (132)
T ss_pred ccCCCCHHHHHHH
Confidence 6789999999977
No 145
>PF11575 FhuF_C: FhuF 2Fe-2S C-terminal domain; InterPro: IPR024726 Ferric iron reductase (FhuF) is involved in the reduction of ferric iron in cytoplasmic ferrioxamine B []. This entry represents the C-terminal domain that contains 4 conserved cysteine residues found to be part of a 2Fe-2S cluster [].; GO: 0051537 2 iron, 2 sulfur cluster binding
Probab=23.61 E-value=44 Score=15.17 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=6.4
Q ss_pred CCCCCCccE
Q psy8859 44 KSCACATCH 52 (109)
Q Consensus 44 G~G~CgtC~ 52 (109)
|.+.|++|-
T Consensus 12 ~~~~C~~CP 20 (22)
T PF11575_consen 12 GGGYCGTCP 20 (22)
T ss_pred CCCccCCCC
Confidence 457788883
No 146
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=23.11 E-value=67 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK 44 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G 44 (109)
|.|..+.++.|.|.+|.|.+-.-++-+.|.|
T Consensus 367 PkG~~~~lp~gst~~DfAy~ih~~~g~~~~~ 397 (683)
T TIGR00691 367 PKGDVVELPSGSTPVDFAYAVHTDVGNKCTG 397 (683)
T ss_pred CCCeEEEcCCCCCHHHHHHHHhHHhHhceeE
Confidence 8999999999999999999877677777764
No 147
>KOG4214|consensus
Probab=22.62 E-value=26 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.1
Q ss_pred cEEEeCCCChHHHHHHhCCC
Q psy8859 17 AIFNENSGISLCDALLKNSI 36 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi 36 (109)
+++..+.|++++++..+..|
T Consensus 93 rt~~~PdG~~~~eate~edI 112 (117)
T KOG4214|consen 93 RTIHAPDGTALIEATEEEDI 112 (117)
T ss_pred cceeCCCchhHHhhccHHHH
Confidence 58999999999999877655
No 148
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=22.29 E-value=1.6e+02 Score=16.63 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCc
Q psy8859 15 DGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
+|+.++++.+.||.+.-.+.+- .+-|-|..|.
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~-------------~~DI~I~NGF 37 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP-------------DADIVILNGF 37 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC-------------CCCEEEEcCc
Confidence 6899999999999997666532 1247777885
No 149
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=21.86 E-value=1.1e+02 Score=19.26 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=17.4
Q ss_pred cEEEeCCCChHHHHHHhCCC
Q psy8859 17 AIFNENSGISLCDALLKNSI 36 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi 36 (109)
.++.+.+|+||.+.+.+.+.
T Consensus 37 ~~~tV~~GDTLW~IA~~y~~ 56 (103)
T PRK14125 37 VEITVQEGDTLWALADQYAG 56 (103)
T ss_pred EEEEECCCCCHHHHHHHhCC
Confidence 47899999999999998754
No 150
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=21.67 E-value=1.7e+02 Score=16.60 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=17.6
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|+|.+ .+|+ .+++.+.+|+-+.
T Consensus 1 m~i~vk~-----~~G~~~~l~v~~~~tV~~l 26 (74)
T cd01807 1 MFLTVKL-----LQGRECSLQVSEKESVSTL 26 (74)
T ss_pred CEEEEEe-----CCCCEEEEEECCCCcHHHH
Confidence 3677775 5776 5778899998874
No 151
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=21.57 E-value=1.6e+02 Score=16.37 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=17.4
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|+|.+ .+|+ .+++.+..|+.+.
T Consensus 1 m~i~v~~-----~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 1 MQIFVKT-----LTGKTITLEVEPSDTIENV 26 (76)
T ss_pred CEEEEEc-----CCCCEEEEEECCcCcHHHH
Confidence 3577775 5676 5788888888775
No 152
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=21.07 E-value=92 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACEK 44 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G 44 (109)
|.|+.|+.+.|.|.+|.|-.-.-++-+.|-|
T Consensus 394 PkG~vi~LP~GatplDFAY~vHt~iG~~c~g 424 (701)
T COG0317 394 PKGKVIDLPKGATPLDFAYAVHTDIGHRCIG 424 (701)
T ss_pred CCCCEEeCCCCCcchhhhhhhhchhcceeeE
Confidence 8999999999999999999988889888885
No 153
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=20.79 E-value=61 Score=21.97 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.3
Q ss_pred EeCCCChHHHHHHhCCCCccc
Q psy8859 20 NENSGISLCDALLKNSIFIEH 40 (109)
Q Consensus 20 ~~~~g~tLl~a~~~~gi~i~~ 40 (109)
..-+|.+|-+.+.+.||.+.|
T Consensus 6 ~p~Dg~~L~~~lH~~GIN~Ry 26 (169)
T PF12807_consen 6 SPIDGQSLTEILHRRGINMRY 26 (169)
T ss_pred cCcccHHHHHHHHHcCCchHH
Confidence 345789999999999998765
No 154
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=20.59 E-value=60 Score=19.71 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=9.4
Q ss_pred cccCCCCCCCCccE
Q psy8859 39 EHACEKSCACATCH 52 (109)
Q Consensus 39 ~~~C~G~G~CgtC~ 52 (109)
...|. .|.|..|-
T Consensus 53 ~~gC~-sGsCk~C~ 65 (78)
T PRK15431 53 PDGCL-SGSCKSCP 65 (78)
T ss_pred CCCCC-CCCCCCCC
Confidence 45798 68888773
No 155
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=20.32 E-value=1.8e+02 Score=16.39 Aligned_cols=24 Identities=0% Similarity=-0.028 Sum_probs=17.1
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|+|.+ .+|+ .+++.+..|+.+.
T Consensus 1 m~i~vk~-----~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 1 MKITFKT-----LKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred CEEEEEe-----CCCCEEEEEECCCCcHHHH
Confidence 3567765 5666 5788888888775
Done!