Query psy8859
Match_columns 109
No_of_seqs 229 out of 1134
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ah7_A [2Fe-2S]ferredoxin; [2F 100.0 8.8E-33 3E-37 178.3 11.2 108 1-108 1-108 (113)
2 1i7h_A Ferredoxin; 2Fe-2S,elec 100.0 6.4E-31 2.2E-35 169.2 10.8 108 1-108 1-108 (111)
3 3hui_A Ferredoxin; cytochrome 100.0 4.3E-31 1.5E-35 173.9 8.4 99 1-105 21-126 (126)
4 2bt6_A Adrenodoxin 1; rutheniu 100.0 2.2E-30 7.4E-35 165.9 8.1 96 1-101 6-108 (108)
5 2y5c_A Adrenodoxin-like protei 100.0 2.6E-30 8.8E-35 165.9 8.2 99 1-104 5-108 (109)
6 3lxf_A Ferredoxin; iron, iron- 100.0 8E-30 2.7E-34 162.7 10.1 97 2-104 1-104 (104)
7 1xlq_A Putidaredoxin, PDX; [2F 100.0 3.3E-29 1.1E-33 159.8 11.0 98 2-104 1-105 (106)
8 1uwm_A Ferredoxin VI, FDVI; el 100.0 3.3E-29 1.1E-33 159.8 9.4 98 2-104 1-105 (106)
9 1b9r_A Protein (terpredoxin); 100.0 3.5E-29 1.2E-33 159.5 5.2 97 2-103 1-104 (105)
10 3n9z_C Adrenodoxin; cytochrome 100.0 5.3E-30 1.8E-34 168.0 0.7 101 1-106 5-112 (123)
11 2wlb_A ETP1-FD, electron trans 99.9 5.9E-28 2E-32 153.3 8.5 95 1-101 3-103 (103)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.9 3.5E-25 1.2E-29 138.4 8.7 88 2-100 1-93 (93)
13 1frr_A Ferredoxin I; electron 99.9 8.7E-26 3E-30 141.1 5.4 92 1-105 1-93 (95)
14 1a70_A Ferredoxin; iron-sulfur 99.9 1.1E-25 3.7E-30 141.6 4.4 93 2-107 3-96 (97)
15 1czp_A Ferredoxin I; [2Fe-2S] 99.9 2.3E-25 7.9E-30 140.2 5.4 91 2-105 3-96 (98)
16 1awd_A Ferredoxin; electron tr 99.9 6.8E-25 2.3E-29 137.1 5.3 90 3-105 2-92 (94)
17 1frd_A Heterocyst [2Fe-2S] fer 99.9 5.1E-25 1.7E-29 138.5 4.4 90 2-104 3-95 (98)
18 1wri_A Ferredoxin II, ferredox 99.9 4.8E-25 1.6E-29 137.7 4.0 90 1-104 1-91 (93)
19 1iue_A Ferredoxin; electron tr 99.9 4.4E-25 1.5E-29 139.0 3.5 91 2-105 3-94 (98)
20 1jq4_A Methane monooxygenase c 99.9 1.6E-25 5.3E-30 141.0 -0.8 94 1-103 4-97 (98)
21 1doi_A 2Fe-2S ferredoxin; halo 99.9 7.8E-24 2.7E-28 139.5 1.8 90 1-103 27-118 (128)
22 3zyy_X Iron-sulfur cluster bin 99.9 6.1E-23 2.1E-27 163.5 5.4 92 1-105 3-94 (631)
23 1krh_A Benzoate 1,2-dioxygenas 99.9 5.8E-23 2E-27 152.2 4.3 96 1-103 3-98 (338)
24 2pia_A Phthalate dioxygenase r 99.8 4.4E-20 1.5E-24 136.3 7.6 82 3-100 239-321 (321)
25 3i9v_3 NADH-quinone oxidoreduc 99.2 3.3E-11 1.1E-15 98.2 7.5 82 14-102 6-97 (783)
26 3c8y_A Iron hydrogenase 1; dit 99.0 1.1E-09 3.9E-14 86.6 7.4 69 4-102 2-76 (574)
27 1t3q_A Quinoline 2-oxidoreduct 98.7 2.1E-08 7.3E-13 68.2 6.4 48 3-58 11-62 (168)
28 1kf6_B Fumarate reductase iron 98.6 3E-08 1E-12 70.4 3.6 57 18-100 27-92 (243)
29 2bs2_B Quinol-fumarate reducta 98.4 1.6E-07 5.4E-12 66.6 4.0 40 18-59 27-72 (241)
30 1n62_A Carbon monoxide dehydro 98.4 5.9E-07 2E-11 61.1 6.1 47 3-56 5-55 (166)
31 1ffv_A CUTS, iron-sulfur prote 98.4 6E-07 2.1E-11 60.9 6.1 47 3-56 5-55 (163)
32 3hrd_D Nicotinate dehydrogenas 98.4 6.8E-07 2.3E-11 60.4 6.1 47 3-56 5-55 (160)
33 1rm6_C 4-hydroxybenzoyl-COA re 98.3 1.2E-06 4.2E-11 59.2 6.0 48 3-58 4-55 (161)
34 2h88_B Succinate dehydrogenase 98.0 5.2E-06 1.8E-10 59.3 4.1 39 18-58 34-79 (252)
35 2wdq_B Succinate dehydrogenase 97.8 1.4E-05 4.7E-10 56.4 3.6 39 18-58 24-69 (238)
36 2w3s_A Xanthine dehydrogenase; 97.6 9.4E-05 3.2E-09 57.3 6.4 47 3-56 2-52 (462)
37 1vlb_A Aldehyde oxidoreductase 97.6 9.3E-05 3.2E-09 61.4 6.3 50 1-58 1-54 (907)
38 3nvw_A Xanthine dehydrogenase/ 97.6 7.4E-05 2.5E-09 50.6 4.8 47 3-56 4-55 (164)
39 1dgj_A Aldehyde oxidoreductase 97.6 0.00011 3.6E-09 61.1 5.8 49 1-56 1-53 (907)
40 1y56_A Hypothetical protein PH 97.3 0.00024 8.3E-09 54.6 4.4 49 2-56 14-67 (493)
41 3vr8_B Iron-sulfur subunit of 97.2 0.0004 1.4E-08 50.7 4.4 40 18-59 58-104 (282)
42 2gag_A Heterotetrameric sarcos 96.8 0.0025 8.5E-08 53.0 6.5 48 2-56 21-79 (965)
43 3unc_A Xanthine dehydrogenase/ 96.0 0.0093 3.2E-07 51.4 5.7 47 3-56 5-56 (1332)
44 3zyv_A AOH1; oxidoreductase, m 94.7 0.05 1.7E-06 46.9 6.0 48 3-57 9-61 (1335)
45 2l32_A Small archaeal modifier 84.4 1.2 4.1E-05 25.6 3.5 22 18-39 14-35 (74)
46 3hvz_A Uncharacterized protein 81.4 2.1 7.2E-05 24.9 3.8 30 14-43 13-42 (78)
47 2kmm_A Guanosine-3',5'-BIS(dip 81.3 2.4 8.1E-05 23.5 3.9 26 14-39 8-33 (73)
48 1wwt_A Threonyl-tRNA synthetas 80.1 1.7 6E-05 25.3 3.2 29 14-42 17-46 (88)
49 1tyg_B YJBS; alpha beta barrel 76.9 2.3 8E-05 25.3 3.0 24 14-37 25-49 (87)
50 1ep3_B Dihydroorotate dehydrog 76.3 1.8 6.2E-05 30.0 2.8 29 26-56 205-239 (262)
51 1c1y_B Proto-onkogene serine/t 75.7 3.4 0.00011 24.2 3.4 36 14-56 9-47 (77)
52 2al3_A TUG long isoform; TUG U 73.8 2.4 8.4E-05 25.6 2.5 30 3-37 11-46 (90)
53 2k5p_A THis protein, thiamine- 72.5 3.5 0.00012 23.8 3.0 23 15-37 6-30 (78)
54 3u7z_A Putative metal binding 71.2 5.9 0.0002 24.3 3.9 27 3-35 10-40 (101)
55 1tke_A Threonyl-tRNA synthetas 71.1 3.5 0.00012 28.3 3.2 28 1-35 1-28 (224)
56 2l05_A Serine/threonine-protei 70.4 5.1 0.00017 24.4 3.4 37 14-56 25-63 (95)
57 1wxm_A A-RAF proto-oncogene se 69.3 3.8 0.00013 24.5 2.6 37 14-56 15-53 (86)
58 2kl0_A Putative thiamin biosyn 68.0 5.6 0.00019 22.6 3.1 22 15-37 6-27 (73)
59 3kdv_A DDRB, DNA damage respon 67.5 3.9 0.00013 27.3 2.6 30 1-35 7-38 (184)
60 1e0g_A Membrane-bound lytic mu 67.1 4.8 0.00016 20.2 2.5 23 17-39 3-25 (48)
61 3ny5_A Serine/threonine-protei 67.0 6.9 0.00024 23.8 3.5 37 14-57 21-60 (96)
62 1f0z_A THis protein; ubiquitin 63.9 5.2 0.00018 22.0 2.4 23 15-37 6-28 (66)
63 2lxa_A Ubiquitin-like protein 62.4 8 0.00027 22.7 3.2 25 1-30 1-29 (87)
64 1rrb_A RAF-1 RBD, RAF proto-on 61.3 9.1 0.00031 23.7 3.3 37 14-56 26-64 (107)
65 2k02_A Ferrous iron transport 58.7 7.2 0.00025 23.1 2.5 25 26-51 35-64 (87)
66 1ryj_A Unknown; beta/alpha pro 57.5 16 0.00056 20.2 3.8 32 2-37 5-36 (70)
67 1uh6_A Ubiquitin-like 5; beta- 57.3 8.7 0.0003 23.4 2.7 34 1-39 28-67 (100)
68 3plu_A Ubiquitin-like modifier 52.9 12 0.00041 22.5 2.8 33 1-38 21-59 (93)
69 1xn7_A Hypothetical protein YH 51.1 7.6 0.00026 22.4 1.7 25 27-52 36-65 (78)
70 3m62_B UV excision repair prot 48.4 13 0.00045 22.3 2.6 25 1-30 1-27 (106)
71 2dzj_A Synaptic glycoprotein S 45.2 15 0.00052 21.3 2.4 25 1-30 10-39 (88)
72 2djp_A Hypothetical protein SB 39.0 13 0.00046 20.7 1.4 22 18-39 17-38 (77)
73 2cu3_A Unknown function protei 38.6 19 0.00064 19.5 2.0 22 15-37 5-26 (64)
74 1qf6_A THRRS, threonyl-tRNA sy 38.3 22 0.00076 28.2 3.0 28 1-35 1-28 (642)
75 1v2y_A 3300001G02RIK protein; 34.9 46 0.0016 20.1 3.5 25 1-30 7-33 (105)
76 2wyq_A HHR23A, UV excision rep 33.2 61 0.0021 17.8 3.7 25 1-30 5-31 (85)
77 1fs1_B SKP1, cyclin A/CDK2-ass 32.8 29 0.00099 21.9 2.4 18 1-23 1-18 (141)
78 2gow_A HCG-1 protein, ubiquiti 32.7 53 0.0018 20.5 3.6 25 1-30 17-43 (125)
79 2pg3_A Queuosine biosynthesis 32.7 25 0.00087 23.6 2.2 18 26-43 168-190 (232)
80 3mtn_B UBA80, ubcep1, ubiquiti 32.6 59 0.002 17.7 3.6 33 1-38 3-41 (85)
81 2hj1_A Hypothetical protein; s 32.4 17 0.00058 21.9 1.2 22 18-39 29-50 (97)
82 2ljs_A Trypsin inhibitor 3; be 29.7 18 0.00061 16.9 0.7 11 39-49 20-30 (30)
83 4a1k_A Putative L, D-transpept 27.9 44 0.0015 21.7 2.7 21 18-38 4-24 (165)
84 3bl5_A Queuosine biosynthesis 27.7 37 0.0013 22.2 2.4 27 25-51 164-198 (219)
85 3j21_O 50S ribosomal protein L 27.5 22 0.00075 24.4 1.2 19 25-43 118-136 (203)
86 1wh3_A 59 kDa 2'-5'-oligoadeny 26.0 89 0.0031 17.2 3.6 31 2-37 8-44 (87)
87 2l9y_A CVNH-LYSM lectin; carbo 25.9 53 0.0018 21.4 2.8 23 17-39 63-85 (167)
88 4dwf_A HLA-B-associated transc 25.5 66 0.0022 18.0 2.9 24 2-30 6-31 (90)
89 2kk8_A Uncharacterized protein 25.3 92 0.0032 17.5 3.6 24 2-30 11-36 (84)
90 1nyr_A Threonyl-tRNA synthetas 25.0 17 0.00058 28.8 0.3 23 14-36 9-31 (645)
91 1wf9_A NPL4 family protein; be 24.8 1.1E+02 0.0036 18.1 3.9 32 2-38 8-45 (107)
92 1vq8_N 50S ribosomal protein L 24.4 37 0.0013 23.0 1.8 18 25-42 117-134 (187)
93 2pjh_A Protein NPL4, nuclear p 24.1 34 0.0011 19.5 1.4 26 2-32 5-31 (80)
94 3n3k_B Ubiquitin; hydrolase, p 24.0 62 0.0021 17.7 2.6 33 1-38 3-41 (85)
95 1rws_A Hypothetical protein PF 23.8 30 0.001 19.4 1.2 24 14-37 20-43 (77)
96 2lg4_A Aurelin; antimicrobial 29.4 17 0.00058 18.4 0.0 23 27-51 18-40 (40)
97 4ajy_C Transcription elongatio 23.3 59 0.002 18.9 2.5 18 1-23 1-18 (97)
98 1e8g_A Vanillyl-alcohol oxidas 22.7 1.4E+02 0.0048 23.1 5.1 24 14-37 135-161 (560)
99 1ndd_A NEDD8, protein (ubiquit 22.3 96 0.0033 16.3 3.5 31 2-37 1-37 (76)
100 3kxt_A Chromatin protein CREN7 22.2 85 0.0029 17.0 2.7 18 1-23 1-18 (56)
101 3kwl_A Uncharacterized protein 22.2 71 0.0024 24.7 3.3 36 19-63 47-82 (514)
102 2dzi_A Ubiquitin-like protein 22.0 1E+02 0.0035 16.5 3.6 31 2-37 8-44 (81)
103 3rt3_B Ubiquitin-like protein 21.7 1E+02 0.0035 19.2 3.6 32 2-38 3-40 (159)
104 2gu1_A Zinc peptidase; alpha/b 21.7 64 0.0022 23.5 2.8 23 16-38 7-29 (361)
105 3a9j_A Ubiquitin; protein comp 21.6 1E+02 0.0034 16.2 3.6 24 2-30 1-26 (76)
106 4fbj_B NEDD8; effector-HOST ta 21.5 1.2E+02 0.0041 17.0 3.7 71 2-96 1-77 (88)
107 1rju_V Metallothionein; Cu(I)- 20.7 30 0.001 16.6 0.6 7 46-52 5-11 (36)
108 2hj8_A Interferon-induced 17 k 20.7 89 0.0031 17.5 2.9 24 2-30 5-30 (88)
109 1uel_A HHR23B, UV excision rep 20.3 1.3E+02 0.0045 17.1 3.7 24 2-30 1-26 (95)
110 1bi6_H Bromelain inhibitor VI; 20.2 49 0.0017 16.2 1.3 14 40-55 12-25 (41)
111 1wvf_A 4-cresol dehydrogenase 20.1 1.8E+02 0.0062 22.1 5.2 25 14-38 120-147 (520)
No 1
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=100.00 E-value=8.8e-33 Score=178.35 Aligned_cols=108 Identities=46% Similarity=0.896 Sum_probs=97.1
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
||+|||.+++++.++|++|++++|+|||++|+++||++++.|+|.|.||+|+|+|.+|...++++++.|+.+|+...++.
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE 80 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence 99999997666666889999999999999999999999999998899999999999998778888999999998433788
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCcccc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTINQV 108 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~~~~ 108 (109)
+++|||||+++.++|++|++|..+.+.+
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~~~~ 108 (113)
T 3ah7_A 81 AQSRLGCQVFVADEDLTIEIPKYSLNHA 108 (113)
T ss_dssp TTEEEGGGCBCCSSCEEEECCSCCCCCC
T ss_pred CCcEEeeeCEEeCCCEEEEECchhhhhh
Confidence 9999999999975699999998887765
No 2
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.97 E-value=6.4e-31 Score=169.21 Aligned_cols=108 Identities=59% Similarity=1.098 Sum_probs=94.7
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
||+|+|..++++.++|++|++++|+|||++|+++|+++++.|+|.|.||+|+|+|.+|...+++++..|...|+...++.
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE 80 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence 99999997555556789999999999999999999999999977899999999999998888888888888888434678
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCcccc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTINQV 108 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~~~~ 108 (109)
+++||+||+++.++|++|++|..+.|++
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~~~~ 108 (111)
T 1i7h_A 81 PESRLSCQARVTDEDLVVEIPRYTINHA 108 (111)
T ss_dssp TTEEETTTCBCCSSCEEEECCSCCCCTT
T ss_pred CCcEEEEEEEEeCCCEEEEEChHHhhhh
Confidence 8999999999964799999998888765
No 3
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.97 E-value=4.3e-31 Score=173.91 Aligned_cols=99 Identities=31% Similarity=0.652 Sum_probs=89.6
Q ss_pred CCEEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhc
Q psy8859 1 MPQVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKA 76 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~ 76 (109)
||+|+|.+ ++| ++|++++|+|||++|+++||+ +++.|+|.|.||+|+|+|.+|+ ..++++++.|.++|+..
T Consensus 21 M~~Vt~~~-----~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~ 95 (126)
T 3hui_A 21 MAKINFVD-----HTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFG 95 (126)
T ss_dssp EEEEEEEC-----TTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTS
T ss_pred ceEEEEEe-----CCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCch
Confidence 89999996 788 789999999999999999999 9999999999999999999996 55788899999999844
Q ss_pred CCCCCCeEEeeeeEeeCCC---EEEEeCCCCc
Q psy8859 77 WGLEENSRLSCQVILGSSD---LTIEIPRYTI 105 (109)
Q Consensus 77 ~~~~~~~rLaCq~~~~~~d---i~v~~~~~~~ 105 (109)
.+++++||||||+++. +| ++|++|+.++
T Consensus 96 ~e~~~g~RLaCQ~~~~-~dldgl~V~lp~~~r 126 (126)
T 3hui_A 96 YDVRPNSRLSCQIKVS-NELDGLIVTTPERQR 126 (126)
T ss_dssp SSCCTTEEEGGGCBCC-GGGTTEEEECCSCCC
T ss_pred hhccCCeEEeeeCEEC-cCCCcEEEEecCcCC
Confidence 6889999999999998 55 9999998763
No 4
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.96 E-value=2.2e-30 Score=165.92 Aligned_cols=96 Identities=34% Similarity=0.658 Sum_probs=86.3
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCCcc--ccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREGF-NEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~i~--~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~ 75 (109)
|++|+|.+ ++|+ +|++++|+|||++|+++||+++ +.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+.
T Consensus 6 m~~V~~~~-----~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~ 80 (108)
T 2bt6_A 6 KITVHFIN-----RDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDL 80 (108)
T ss_dssp EEEEEEEC-----TTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTT
T ss_pred eEEEEEEC-----CCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhC
Confidence 78999986 6777 8999999999999999999999 99998899999999999995 6678899999999984
Q ss_pred cCCCCCCeEEeeeeEeeCC--CEEEEeC
Q psy8859 76 AWGLEENSRLSCQVILGSS--DLTIEIP 101 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~--di~v~~~ 101 (109)
..++.++||||||+++.++ |++|++|
T Consensus 81 ~~~~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 81 AYGLTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp CTTCCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred cccCCCCcEeeEEEEecCCCCCEEEEcC
Confidence 3678999999999999843 7999986
No 5
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.6e-30 Score=165.89 Aligned_cols=99 Identities=32% Similarity=0.547 Sum_probs=87.2
Q ss_pred CCEEEEEeCCccCCCCcE--EEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcC
Q psy8859 1 MPQVIVLPHPVLCEDGAI--FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAW 77 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~--i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~ 77 (109)
|++|+|.. ++|++ |++++|+|||++|+++||++++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...
T Consensus 5 m~~v~~~~-----~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~ 79 (109)
T 2y5c_A 5 VVNVVFVD-----RSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAP 79 (109)
T ss_dssp EEEEEEEC-----TTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTST
T ss_pred cEEEEEEc-----CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccc
Confidence 67899975 67874 99999999999999999999999998899999999999995 567889999999998435
Q ss_pred CCCCCeEEeeeeEeeCC--CEEEEeCCCC
Q psy8859 78 GLEENSRLSCQVILGSS--DLTIEIPRYT 104 (109)
Q Consensus 78 ~~~~~~rLaCq~~~~~~--di~v~~~~~~ 104 (109)
++.+|||||||+++.++ +++|++|+.+
T Consensus 80 ~~~~g~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 80 LLQENSRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp TCCTTEEEGGGCBCCGGGTTCEEECCSCC
T ss_pred cCCCCcEeeEEeEEecCCCeEEEEecCCC
Confidence 78999999999999843 5999999764
No 6
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.96 E-value=8e-30 Score=162.70 Aligned_cols=97 Identities=31% Similarity=0.581 Sum_probs=87.2
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcC
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAW 77 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~ 77 (109)
++|+|++ ++|. +|++++|+|||++++++|++ +++.|+|.|.||+|+|+|.+|+ ..++++++.|..+|+...
T Consensus 1 ~~vt~~~-----~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~ 75 (104)
T 3lxf_A 1 TAILVTT-----RDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSD 75 (104)
T ss_dssp CEEEEEC-----TTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTST
T ss_pred CEEEEEe-----CCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhcccc
Confidence 6899997 6775 79999999999999999999 9999999999999999999996 567888999999998437
Q ss_pred CCCCCeEEeeeeEeeCCC---EEEEeCCCC
Q psy8859 78 GLEENSRLSCQVILGSSD---LTIEIPRYT 104 (109)
Q Consensus 78 ~~~~~~rLaCq~~~~~~d---i~v~~~~~~ 104 (109)
++.++||||||+++. +| ++|++|+.+
T Consensus 76 ~~~~g~rLaCq~~~~-~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 76 HRTPHSRLSCQITIN-DKLEGLEVEIAPED 104 (104)
T ss_dssp TCCTTEEEGGGCBCC-GGGTTCEEEECCCC
T ss_pred ccCCCcEEEeeCEEc-cCCCCEEEEecCCC
Confidence 889999999999998 55 999999764
No 7
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.96 E-value=3.3e-29 Score=159.83 Aligned_cols=98 Identities=35% Similarity=0.652 Sum_probs=86.5
Q ss_pred CEEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcC
Q psy8859 2 PQVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAW 77 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~ 77 (109)
|+|+|+. ++| ++|++++|+|||++|+++||+ +++.|+|.|.||+|+|+|.+|+ ..++++++.|.++|+..+
T Consensus 1 ~~V~~~~-----~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~ 75 (106)
T 1xlq_A 1 SKVVYVS-----HDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVT 75 (106)
T ss_dssp CEEEEEC-----TTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCS
T ss_pred CEEEEEe-----CCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhccc
Confidence 6899954 788 799999999999999999999 9999988999999999999995 667888988999998433
Q ss_pred CC-CCCeEEeeeeEeeCC--CEEEEeCCCC
Q psy8859 78 GL-EENSRLSCQVILGSS--DLTIEIPRYT 104 (109)
Q Consensus 78 ~~-~~~~rLaCq~~~~~~--di~v~~~~~~ 104 (109)
++ .+++||+||+++.++ |++|++|+.+
T Consensus 76 ~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 76 AELKPNSRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp SCCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred ccCCCCcEeeeeeEeecCCCCEEEEecCcc
Confidence 37 899999999999844 7999998765
No 8
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.96 E-value=3.3e-29 Score=159.82 Aligned_cols=98 Identities=28% Similarity=0.600 Sum_probs=86.8
Q ss_pred CEEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcC
Q psy8859 2 PQVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAW 77 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~ 77 (109)
|+|+|+. ++| ++|++++|+|||++|+++||+ +++.|+|.|.||+|+|+|.+|+ ..++++++.|.++|+...
T Consensus 1 ~~v~~~~-----~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~ 75 (106)
T 1uwm_A 1 AKIIFIE-----HNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAY 75 (106)
T ss_dssp CEEEEEC-----TTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSS
T ss_pred CEEEEEe-----CCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCcc
Confidence 6899964 788 899999999999999999999 9999988999999999999995 667889999999999433
Q ss_pred CCC-CCeEEeeeeEeeCC--CEEEEeCCCC
Q psy8859 78 GLE-ENSRLSCQVILGSS--DLTIEIPRYT 104 (109)
Q Consensus 78 ~~~-~~~rLaCq~~~~~~--di~v~~~~~~ 104 (109)
++. +++||+||+++.++ +++|++|+.+
T Consensus 76 ~~~~~g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 76 EPNPATSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp SCCTTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred ccCCCCcEecccCEEccCCCCEEEEecCCC
Confidence 688 99999999999844 7999998765
No 9
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.95 E-value=3.5e-29 Score=159.47 Aligned_cols=97 Identities=31% Similarity=0.593 Sum_probs=85.3
Q ss_pred CEEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhch-hc
Q psy8859 2 PQVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLN-KA 76 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~-~~ 76 (109)
|+|+|+. ++| ++|++++|+|||++++++||+ +++.|+|.|.||+|+|+|.+|+ ..+++++..|.++|+ ..
T Consensus 1 ~~V~~~~-----~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~ 75 (105)
T 1b9r_A 1 PRVVFID-----EQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTG 75 (105)
T ss_dssp CEEEECC-----TTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSC
T ss_pred CEEEEEe-----CCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhccc
Confidence 6899954 788 899999999999999999999 9999998999999999999995 556778888888997 34
Q ss_pred CCCCCCeEEeeeeEeeCC--CEEEEeCCC
Q psy8859 77 WGLEENSRLSCQVILGSS--DLTIEIPRY 103 (109)
Q Consensus 77 ~~~~~~~rLaCq~~~~~~--di~v~~~~~ 103 (109)
.++.+++||+||+++.++ |++|++|+.
T Consensus 76 ~~~~~g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 76 EPMTAGTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp CCCCTTBSCGGGCCCCTTSTTEEEECCSC
T ss_pred ccCCCCcEeeeeCEecCCCCcEEEEecCC
Confidence 678899999999999844 899999864
No 10
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.95 E-value=5.3e-30 Score=168.04 Aligned_cols=101 Identities=34% Similarity=0.652 Sum_probs=25.6
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCCcc--ccCCCCCCCCccEEEecCC-cccCCCCCHHHHhhchh
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK 75 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~i~--~~C~G~G~CgtC~v~v~~g-~~~l~~~~~~E~~~L~~ 75 (109)
|++|+|++ ++|. +|++++|+|||++++++||+++ +.|+|.|.||+|||+|.++ ...++++++.|.++|+.
T Consensus 5 ~v~Vtf~~-----~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~ 79 (123)
T 3n9z_C 5 KITVHFIN-----RDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDL 79 (123)
T ss_dssp -------------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC
T ss_pred cEEEEEEe-----CCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcc
Confidence 78999986 6774 8999999999999999999999 9999999999999999965 56788888899999984
Q ss_pred cCCCCCCeEEeeeeEeeCC--CEEEEeCCCCcc
Q psy8859 76 AWGLEENSRLSCQVILGSS--DLTIEIPRYTIN 106 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~--di~v~~~~~~~~ 106 (109)
+.++.+++|||||+++.++ |++|++|....+
T Consensus 80 ~~~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~ 112 (123)
T 3n9z_C 80 AYGLTDRSRLGCQICLTKSMDNMTVRVPETVAD 112 (123)
T ss_dssp --------CBCC---------------------
T ss_pred cccccCCeEEeeEeEEccCCCCEEEEECccccc
Confidence 4678899999999999842 899999987654
No 11
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=5.9e-28 Score=153.33 Aligned_cols=95 Identities=43% Similarity=0.707 Sum_probs=83.9
Q ss_pred CCEEEEEeCCccCCCC--cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCc-ccCCCCCHHHHhhchhcC
Q psy8859 1 MPQVIVLPHPVLCEDG--AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAW 77 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g--~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~-~~l~~~~~~E~~~L~~~~ 77 (109)
+++|+|.+ ++| ++|++++|+|||++|+++|+++++.|+|.|.||+|+|+|.+|+ ..++++++.|.++|+...
T Consensus 3 ~~~v~~~~-----~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~ 77 (103)
T 2wlb_A 3 GIKVFFVT-----PEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAF 77 (103)
T ss_dssp CEEEEEEC-----TTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBT
T ss_pred ceEEEEEe-----CCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhccc
Confidence 45788885 578 7999999999999999999999999998899999999999995 456788899999998435
Q ss_pred CCCCCeEEeeeeEeeCCC---EEEEeC
Q psy8859 78 GLEENSRLSCQVILGSSD---LTIEIP 101 (109)
Q Consensus 78 ~~~~~~rLaCq~~~~~~d---i~v~~~ 101 (109)
++.+++||+||+++. +| ++|++|
T Consensus 78 ~~~~g~rLaCq~~~~-~d~~~l~v~lp 103 (103)
T 2wlb_A 78 GLEETSRLGCQVLLR-KDLDGIRVRIP 103 (103)
T ss_dssp TCCTTEEEGGGCBCC-GGGTTEEEECC
T ss_pred CCCCCcEeeEeeEeC-CCCCcEEEEcC
Confidence 788999999999998 66 999986
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.92 E-value=3.5e-25 Score=138.36 Aligned_cols=88 Identities=19% Similarity=0.425 Sum_probs=77.1
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCC
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 78 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~ 78 (109)
++|+|. ++|+ +|++++|+|||++++++|++ +++.|+|.|.||+|+|+|.+|. ++++++.|..+|+ +
T Consensus 1 ~~v~i~------~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~--~~~~~~~e~~~L~---~ 69 (93)
T 1l5p_A 1 GTITAV------KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK--VAAAEDDEKEFLE---D 69 (93)
T ss_dssp CEEEEE------ETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESC--CCCCCHHHHHHHT---T
T ss_pred CeEEEE------eCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCc--CCCCCHHHHHHhc---C
Confidence 478877 6787 89999999999999999999 9999999999999999999875 5677888888887 6
Q ss_pred CCCCeEEeeeeEeeCC--CEEEEe
Q psy8859 79 LEENSRLSCQVILGSS--DLTIEI 100 (109)
Q Consensus 79 ~~~~~rLaCq~~~~~~--di~v~~ 100 (109)
+.+++||+||+++.++ +++|++
T Consensus 70 ~~~g~rLaCq~~~~~d~~g~~v~~ 93 (93)
T 1l5p_A 70 QPANARLACAITLSGENDGAVFEL 93 (93)
T ss_dssp SCTTEEEGGGCEECGGGTTCEEEC
T ss_pred CCCCcEEeeECEECCCCCceEEEC
Confidence 8899999999999843 677764
No 13
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.92 E-value=8.7e-26 Score=141.13 Aligned_cols=92 Identities=23% Similarity=0.343 Sum_probs=78.0
Q ss_pred CCEEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCC
Q psy8859 1 MPQVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~ 79 (109)
|++|+|.. ++| ++|++++|+|||++|+++||++++.|+ .|.||+|+|+|.+|..... |...|+ ..++
T Consensus 1 ~~~v~~~~-----~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~-----~~~~L~-~~~~ 68 (95)
T 1frr_A 1 AYKTVLKT-----PSGEFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKVVSGSVDES-----EGSFLD-DGQM 68 (95)
T ss_dssp CEEEEEEE-----TTEEEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEECT-----TCCSCC-HHHH
T ss_pred CeEEEEEe-----CCCcEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEEEeCCcccc-----ccccCC-HHHH
Confidence 67899974 687 899999999999999999999999998 8999999999999964332 344666 3456
Q ss_pred CCCeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 80 EENSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
++++||+||+++. +|++|+++....
T Consensus 69 ~~g~~LaC~~~~~-~~~~v~~~~~~~ 93 (95)
T 1frr_A 69 EEGFVLTCIAIPE-SDLVIETHKEEE 93 (95)
T ss_dssp HTTEEETTTCEES-SCEEEECCCTTT
T ss_pred hCCcEEeeECEEC-CCEEEEEcchhh
Confidence 7899999999998 899999987543
No 14
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.92 E-value=1.1e-25 Score=141.57 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=77.7
Q ss_pred CEEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 2 PQVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
++|+|.. ++| ++|++++|+|||++|+++|+++++.|+ .|.||+|+|+|.+|.... .|...|+ ..+++
T Consensus 3 ~~v~~~~-----~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~-----~e~~~L~-~~e~~ 70 (97)
T 1a70_A 3 YKVTLVT-----PTGNVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKLKTGSLNQ-----DDQSFLD-DDQID 70 (97)
T ss_dssp EEEEEEE-----TTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEEEESCEEC-----TTCCSSC-HHHHH
T ss_pred EEEEEEe-----CCceEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEEccCCcCc-----cccccCC-HHHhh
Confidence 5789974 566 789999999999999999999999998 899999999999996432 2345666 34567
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCccc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTINQ 107 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~~~ 107 (109)
+|+||+||+++. +|++|++|+.+..+
T Consensus 71 ~g~~LaCq~~~~-~d~~v~~~~~~~~~ 96 (97)
T 1a70_A 71 EGWVLTCAAYPV-SDVTIETHKKEELT 96 (97)
T ss_dssp HTEEEGGGCEES-SCEEEECCCGGGCC
T ss_pred CCeEEEeECEEC-CCEEEEeCchhhcc
Confidence 899999999998 89999999876543
No 15
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.91 E-value=2.3e-25 Score=140.23 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=76.6
Q ss_pred CEEEEEeCCccCCC---CcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCC
Q psy8859 2 PQVIVLPHPVLCED---GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 78 (109)
Q Consensus 2 ~~V~~~~~~~~~~~---g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~ 78 (109)
++|+|.. ++ +++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|+.... |...|+ ..+
T Consensus 3 ~~V~~~~-----~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~-~~e 70 (98)
T 1czp_A 3 FKVTLIN-----EAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKLVSGTVDQS-----DQSFLD-DDQ 70 (98)
T ss_dssp EEEEEEE-----TTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEECT-----TCCSSC-HHH
T ss_pred eEEEEEe-----CCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEEccCCcCcc-----ccccCC-HHH
Confidence 5899974 45 5799999999999999999999999998 8999999999999964322 334666 345
Q ss_pred CCCCeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 79 LEENSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 79 ~~~~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
+++++||+||+++. +|++|++|+.+.
T Consensus 71 ~~~g~~LaCq~~~~-~d~~v~~~~~~~ 96 (98)
T 1czp_A 71 IEAGYVLTCVAYPT-SDVVIQTHKEED 96 (98)
T ss_dssp HHTTEEEGGGCEES-SCEEEECCCTTT
T ss_pred hhCCeEEeeeCEEC-CCEEEEeccccc
Confidence 67899999999998 899999987654
No 16
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.91 E-value=6.8e-25 Score=137.13 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=75.9
Q ss_pred EEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCC
Q psy8859 3 QVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 81 (109)
Q Consensus 3 ~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~ 81 (109)
+|+|.. ++| ++|++++|+|||++|+++|+++++.|+ .|.||+|+|+|.+|..... |...|+ ..++++
T Consensus 2 ~v~~~~-----~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~-~~e~~~ 69 (94)
T 1awd_A 2 KVTLKT-----PSGEETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKVESGEVDQS-----DQSFLD-DAQMGK 69 (94)
T ss_dssp EEEEEE-----TTEEEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEECT-----TCCSSC-HHHHHT
T ss_pred EEEEEe-----CCCcEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEEEeCCcCcc-----ccccCC-HHHHhC
Confidence 688864 576 799999999999999999999999998 8999999999999964322 345676 345678
Q ss_pred CeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 82 NSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 82 ~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
|+||+||+++. +|++|++++.+.
T Consensus 70 g~~LaCq~~~~-~d~~i~~~~~~~ 92 (94)
T 1awd_A 70 GFVLTCVAYPT-SDVTILTHQEAA 92 (94)
T ss_dssp TEEEGGGCEES-SCEEEECCCGGG
T ss_pred CcEEeeECEEC-CCEEEEecchhc
Confidence 99999999998 899999987653
No 17
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.91 E-value=5.1e-25 Score=138.51 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=75.8
Q ss_pred CEEEEEeCCccCCC---CcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCC
Q psy8859 2 PQVIVLPHPVLCED---GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 78 (109)
Q Consensus 2 ~~V~~~~~~~~~~~---g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~ 78 (109)
++|+|.. ++ +++|++++|+|||++++++||++|+.|+ .|.||+|+|+|.+|..... |...|+ ..+
T Consensus 3 ~~V~~~~-----~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~-~~e 70 (98)
T 1frd_A 3 YQVRLIN-----KKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKVVEGEVDQS-----DQIFLD-DEQ 70 (98)
T ss_dssp EEEEEEE-----TTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEECT-----TCCSCC-HHH
T ss_pred eEEEEEe-----CCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEEEeCCcccc-----ccccCC-HHH
Confidence 5899984 35 6899999999999999999999999998 8999999999999964322 344676 345
Q ss_pred CCCCeEEeeeeEeeCCCEEEEeCCCC
Q psy8859 79 LEENSRLSCQVILGSSDLTIEIPRYT 104 (109)
Q Consensus 79 ~~~~~rLaCq~~~~~~di~v~~~~~~ 104 (109)
+++++||+||+++. +|++|+++...
T Consensus 71 ~~~g~~LaC~~~~~-~d~~v~~~~~~ 95 (98)
T 1frd_A 71 MGKGFALLCVTYPR-SNCTIKTHQEP 95 (98)
T ss_dssp HHTTEEEGGGCEES-SSEEEECCCGG
T ss_pred hhCCcEEEeECEEC-CCEEEEecchh
Confidence 67899999999998 89999998654
No 18
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.91 E-value=4.8e-25 Score=137.66 Aligned_cols=90 Identities=27% Similarity=0.384 Sum_probs=76.2
Q ss_pred CCEEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCC
Q psy8859 1 MPQVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~ 79 (109)
|++|+|.. ++| ++|++++|+|||++++++| ++++.|+ .|.||+|+|+|.+|..... |...|+ ..++
T Consensus 1 ~~~V~~~~-----~~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v~~G~~~~~-----e~~~L~-~~~~ 67 (93)
T 1wri_A 1 AYKVTLKT-----PDGDITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKIVSGTVDQS-----EGSFLD-DEQI 67 (93)
T ss_dssp CEEEEEEE-----TTEEEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEEEESCEECT-----TCCSCC-HHHH
T ss_pred CEEEEEEE-----CCCeEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEEecCccCcc-----ccccCC-HHHH
Confidence 68899974 565 7899999999999999999 9999998 8999999999999964322 345676 3456
Q ss_pred CCCeEEeeeeEeeCCCEEEEeCCCC
Q psy8859 80 EENSRLSCQVILGSSDLTIEIPRYT 104 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~di~v~~~~~~ 104 (109)
++|+||+||+++. +|++|++|+.+
T Consensus 68 ~~g~~LaCq~~~~-~d~~v~~~~~~ 91 (93)
T 1wri_A 68 EQGYVLTCIAIPE-SDVVIETHKED 91 (93)
T ss_dssp HTTEEETTTCEES-SCEEEECCCGG
T ss_pred hCCcEEeeeCEEC-CCEEEEecccc
Confidence 7899999999998 89999998754
No 19
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.90 E-value=4.4e-25 Score=139.04 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=75.8
Q ss_pred CEEEEEeCCccCCCC-cEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 2 PQVIVLPHPVLCEDG-AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g-~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
++|+|.. ++| ++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|.... .|...|+ ..+++
T Consensus 3 ~~v~~~~-----~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~-----~e~~~L~-~~e~~ 70 (98)
T 1iue_A 3 YNITLRT-----NDGEKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKLVEGEVDN-----DDQSYLD-EEQIK 70 (98)
T ss_dssp EEEEEEE-----TTEEEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEEEESCEEC-----TTCCSSC-HHHHH
T ss_pred EEEEEEe-----CCCeEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEEeeCCccc-----cccccCC-HHHHh
Confidence 4788884 344 789999999999999999999999998 899999999999996432 2345676 34567
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
+|+||+||+++. +|++|++++.+.
T Consensus 71 ~g~~LaCq~~~~-~d~~i~~~~~~~ 94 (98)
T 1iue_A 71 KKYILLCTCYPK-SDCVIETHKEDE 94 (98)
T ss_dssp TTEEEGGGCEES-SCEEEECCCHHH
T ss_pred CCeEEEeECEEC-CCeEEEeCChHh
Confidence 899999999998 899999987543
No 20
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.90 E-value=1.6e-25 Score=140.96 Aligned_cols=94 Identities=24% Similarity=0.407 Sum_probs=76.4
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
|++|+|.++. +.+++|++++|+|||++|+++|+++++.|+ .|.||+|+|+|.+|...+.+ .|...|+ ..+++
T Consensus 4 ~~~v~~~~~~---~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v~~G~~~~~~---~e~~~L~-~~~~~ 75 (98)
T 1jq4_A 4 VHTITAVTED---GESLRFECRSDEDVITAALRQNIFLMSSCR-EGGCATCKALCSEGDYDLKG---CSVQALP-PEEEE 75 (98)
T ss_dssp EEEEEEEETT---TEEEEEEEESCCTHHHHHHHHTCCCCCSCC-SSCCCCCCBCEEECCCCCCC---SCTTTSC-HHHHH
T ss_pred cEEEEEEecC---CCcEEEEeCCCChHHHHHHHcCCCCcCCCC-CCCCCCCEEEEEcCccccCc---ccccccC-HHHhc
Confidence 4578887421 246789999999999999999999999995 99999999999999754422 2456676 45667
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+++||+||+++. +|++|++|..
T Consensus 76 ~g~~LaCq~~~~-~d~~v~~~~~ 97 (98)
T 1jq4_A 76 EGLVLLCRTYPK-TDLEIELPYT 97 (98)
T ss_dssp HHCBCTTTCCSS-CCSEEECSCC
T ss_pred CCcEEEeeCEEC-CCEEEEecCC
Confidence 799999999998 8999999864
No 21
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.87 E-value=7.8e-24 Score=139.50 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=72.8
Q ss_pred CCEEEEEeCCccCCCCc-EEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCC
Q psy8859 1 MPQVIVLPHPVLCEDGA-IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 79 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~-~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~ 79 (109)
|++|+|. ++|+ +|++++|+|||++++++|++++++|+ .|.||+|+|+|.+|..... |...|+..+..
T Consensus 27 m~~i~i~------~~g~~~v~v~~g~tlL~aa~~~Gi~i~~~C~-~G~CgtC~v~v~~G~v~~~-----e~~~L~~~e~~ 94 (128)
T 1doi_A 27 ASDMDLD------DEDYGSLEVNEGEYILEAAEAQGYDWPFSCR-AGACANCAAIVLEGDIDMD-----MQQILSDEEVE 94 (128)
T ss_dssp HHHSCCC------TTTEEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEEEESCEEEC-----CCSSSCHHHHH
T ss_pred ccEEEEE------eCCcEEEEECCCCcHHHHHHHcCCCCccCCC-ccCCCCCEeEEecCCcCch-----hhccCCHhHhc
Confidence 4566665 7888 99999999999999999999999996 8999999999999974322 33456622225
Q ss_pred CCCeEEeeeeEeeCCC-EEEEeCCC
Q psy8859 80 EENSRLSCQVILGSSD-LTIEIPRY 103 (109)
Q Consensus 80 ~~~~rLaCq~~~~~~d-i~v~~~~~ 103 (109)
++++||+||+++. +| ++|++...
T Consensus 95 ~~g~rLaCq~~~~-~d~i~i~~~~~ 118 (128)
T 1doi_A 95 DKNVRLTCIGSPD-ADEVKIVYNAK 118 (128)
T ss_dssp TSCEEEGGGEEEC-SSEEEEEECGG
T ss_pred cCCEEEEEEeEEc-CCeEEEEecCC
Confidence 7899999999998 66 88887543
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.87 E-value=6.1e-23 Score=163.50 Aligned_cols=92 Identities=25% Similarity=0.337 Sum_probs=81.0
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
|++|+|. ++|++|++++|+|||++++++|++++++|+|.|.||+|+|+|.+|+.... |...|+ ..+++
T Consensus 3 m~~V~~~------~sg~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~-----e~~~Ls-~~e~~ 70 (631)
T 3zyy_X 3 EYKVLFK------PDQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVE-----SYGKLK-QEEIA 70 (631)
T ss_dssp CEEEEEE------TTTEEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEES-----CCTTCC-HHHHH
T ss_pred ceEEEEe------cCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCccccc-----ccccCC-HHHhc
Confidence 7899999 89999999999999999999999999999999999999999999975332 335676 45677
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCCCc
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRYTI 105 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~~~ 105 (109)
+++||+||+++. +|++|++|..+.
T Consensus 71 ~G~rLaCqa~~~-sDl~Ielp~~~~ 94 (631)
T 3zyy_X 71 QGYVLACQTYPE-SDLIIEIPFDSR 94 (631)
T ss_dssp TTEEETTTEEEC-SSEEEECCTTSS
T ss_pred CCcEEeeeCEEC-CCEEEEecchhh
Confidence 899999999998 899999997654
No 23
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.87 E-value=5.8e-23 Score=152.18 Aligned_cols=96 Identities=23% Similarity=0.298 Sum_probs=79.8
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~ 80 (109)
|++|+|.+++ +++++|++++|+|||++|+++|+++++.|+ .|.||+|+|+|.+|+...++ .+.|...|+ ..+++
T Consensus 3 ~~~v~~~~~~---~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v~~G~~~~~~-~~~~~~~l~-~~~~~ 76 (338)
T 1krh_A 3 NHQVALQFED---GVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFCESGNYDMPE-DNYIEDALT-PEEAQ 76 (338)
T ss_dssp CEEEEEECTT---SCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEEEECCEECCG-GGSCTTTCC-HHHHH
T ss_pred ceEEEEEEcC---CCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEEecCcEeccc-CccccccCC-HHHHh
Confidence 5789998421 346799999999999999999999999998 89999999999999755431 233566787 45677
Q ss_pred CCeEEeeeeEeeCCCEEEEeCCC
Q psy8859 81 ENSRLSCQVILGSSDLTIEIPRY 103 (109)
Q Consensus 81 ~~~rLaCq~~~~~~di~v~~~~~ 103 (109)
+|+||+||+++. +|++|+++..
T Consensus 77 ~g~~LaCq~~~~-~~~~v~~~~~ 98 (338)
T 1krh_A 77 QGYVLACQCRPT-SDAVFQIQAS 98 (338)
T ss_dssp HTEEETTTCEES-SSEEEEESSC
T ss_pred CCeEEEEeCEEC-CCeEEEEecc
Confidence 899999999998 8999999865
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.81 E-value=4.4e-20 Score=136.31 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=70.4
Q ss_pred EEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCC
Q psy8859 3 QVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEEN 82 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~ 82 (109)
+|+|. +.|++|++++|+|||++++++|++++++|+ .|.||+|+++|++|.+...+ ..|+ ..++ ++
T Consensus 239 ~v~~~------~~~~~~~~~~~~~ll~a~~~~g~~~~~~C~-~G~Cg~C~~~v~~G~~~~~~------~~l~-~~e~-~g 303 (321)
T 2pia_A 239 TVRLS------RSGTSFEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTALCSGEADHRD------MVLR-DDEK-GT 303 (321)
T ss_dssp EEEET------TTCCEEEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEEEESCEECCC------SSCC-TTTT-TT
T ss_pred EEEEe------CCCeEEEECCCCcHHHHHHHcCCCCCCCCC-CCCCCCCEEEEecCcccccc------CCCC-hHHH-CC
Confidence 57776 788999999999999999999999999997 89999999999999754321 4677 4566 99
Q ss_pred eEEeeeeEeeCCC-EEEEe
Q psy8859 83 SRLSCQVILGSSD-LTIEI 100 (109)
Q Consensus 83 ~rLaCq~~~~~~d-i~v~~ 100 (109)
+||+||+++. +| ++|++
T Consensus 304 ~~L~C~~~~~-~d~~~i~l 321 (321)
T 2pia_A 304 QIMVCVSRAK-SAELVLDL 321 (321)
T ss_dssp EEETTTCEES-SSEEEECC
T ss_pred eEEEeEeEEC-CCcEEEeC
Confidence 9999999998 66 88864
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.19 E-value=3.3e-11 Score=98.17 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=59.4
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccC-----CCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCC-----CCCCe
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHAC-----EKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG-----LEENS 83 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C-----~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~-----~~~~~ 83 (109)
.||+++++++|+|||+|++++||+||+.| ++.|.|+.|.|+|..+.. . .+.+.+++ .+. ...+.
T Consensus 6 idg~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~--~---~~g~~~~~-~~G~~~~~~~~~~ 79 (783)
T 3i9v_3 6 VNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKK--G---PDGKPLLN-EKGEPEIQWQPKL 79 (783)
T ss_dssp CSSCEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------------CCBCSSC
T ss_pred ECCEEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEeccccc--c---cccccccc-cccccccccCCCc
Confidence 48999999999999999999999999999 348999999999964321 0 00111222 111 13468
Q ss_pred EEeeeeEeeCCCEEEEeCC
Q psy8859 84 RLSCQVILGSSDLTIEIPR 102 (109)
Q Consensus 84 rLaCq~~~~~~di~v~~~~ 102 (109)
.+||++.+. +||+|+...
T Consensus 80 ~~aC~t~v~-~gm~v~t~~ 97 (783)
T 3i9v_3 80 AASCVTAVA-DGMVVDTLS 97 (783)
T ss_dssp EETTTCBCC-SSEEEESSS
T ss_pred ccccCCCCC-CCCEEEECC
Confidence 899999998 999999754
No 26
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.97 E-value=1.1e-09 Score=86.58 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=58.9
Q ss_pred EEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccCC-----C-CCCCCccEEEecCCcccCCCCCHHHHhhchhcC
Q psy8859 4 VIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACE-----K-SCACATCHVIIREGFNEINKANEVEEDMLNKAW 77 (109)
Q Consensus 4 V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~-----G-~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~ 77 (109)
|+|. .+|+.+++++|+|||++++++|+.+|+.|+ + .|.||.|.|.|. |.
T Consensus 2 v~~~------ing~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~-g~------------------ 56 (574)
T 3c8y_A 2 KTII------INGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVE-GT------------------ 56 (574)
T ss_dssp EEEE------ETTEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEET-TT------------------
T ss_pred eEEE------ECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeC-CC------------------
Confidence 5666 689999999999999999999999999888 6 899999999983 31
Q ss_pred CCCCCeEEeeeeEeeCCCEEEEeCC
Q psy8859 78 GLEENSRLSCQVILGSSDLTIEIPR 102 (109)
Q Consensus 78 ~~~~~~rLaCq~~~~~~di~v~~~~ 102 (109)
. .++||++.+. +||+|....
T Consensus 57 ---~-~~~aC~t~v~-~gm~V~T~~ 76 (574)
T 3c8y_A 57 ---G-LVTACDTLIE-DGMIINTNS 76 (574)
T ss_dssp ---E-EEEGGGCBCC-TTCEEESSC
T ss_pred ---c-ccccCCCCcc-cceeEEecc
Confidence 1 5789999998 899998643
No 27
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.74 E-value=2.1e-08 Score=68.19 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=40.7
Q ss_pred EEEEEeCCccCCCCcE--EEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEecCC
Q psy8859 3 QVIVLPHPVLCEDGAI--FNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~--i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~~g 58 (109)
.|+|. .+|+. +++++|+|||++|+++ |+. .+++|+ .|.||+|.|.| +|
T Consensus 11 ~i~~~------ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~-~G~CGaC~V~v-dG 62 (168)
T 1t3q_A 11 RISAT------INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILI-DG 62 (168)
T ss_dssp EEEEE------ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEE-TT
T ss_pred eEEEE------ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCC-CCCCCCcEEEE-CC
Confidence 46676 57764 5579999999999997 997 889998 89999999999 55
No 28
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.58 E-value=3e-08 Score=70.37 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=45.5
Q ss_pred EEEeCCCChHHHHHHhCCC---C---ccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchhcCCCCCCeEEeeeeEe
Q psy8859 18 IFNENSGISLCDALLKNSI---F---IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQVIL 91 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi---~---i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~~~~~~~~~rLaCq~~~ 91 (109)
++++++|+|||++|++.|+ + ..++|+ .|.||+|.|.| +|. .+|||++.+
T Consensus 27 ~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~-~G~Cg~C~v~v-~G~-----------------------~~~aC~~~~ 81 (243)
T 1kf6_B 27 EVPYDATTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMV-NNV-----------------------PKLACKTFL 81 (243)
T ss_dssp EEEECTTCBHHHHHHHHHHHTCTTCCCCCCCS-SSSSCCCEEEE-TTE-----------------------EEEGGGCBG
T ss_pred EEecCCCChHHHHHHHcCcccCCCcccccCCC-CCcCCCCEeEE-CCE-----------------------EEeeeeeEH
Confidence 6888999999999999983 2 456896 89999999997 552 267888888
Q ss_pred eCCC---EEEEe
Q psy8859 92 GSSD---LTIEI 100 (109)
Q Consensus 92 ~~~d---i~v~~ 100 (109)
. ++ ++|+-
T Consensus 82 ~-~~~~~~~i~~ 92 (243)
T 1kf6_B 82 R-DYTDGMKVEA 92 (243)
T ss_dssp G-GCTTCEEEEC
T ss_pred h-hCCCcEEEEe
Confidence 7 55 77764
No 29
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.43 E-value=1.6e-07 Score=66.64 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=33.3
Q ss_pred EEEeCCCChHHHHHHhCC------CCccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENSGISLCDALLKNS------IFIEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~g------i~i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
++++++|+|||++|++.+ +...++|+ .|.||+|.|+| +|.
T Consensus 27 ~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i-~G~ 72 (241)
T 2bs2_B 27 KIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMI-NGR 72 (241)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEE-TTE
T ss_pred EEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEE-CCC
Confidence 578889999999999864 33457998 89999999999 673
No 30
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.40 E-value=5.9e-07 Score=61.05 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=39.0
Q ss_pred EEEEEeCCccCCCCcE--EEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGAI--FNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~--i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
+|+|. .+|+. +++++++|||++|++. |+. ..+.|+ .|.||+|.|.|.
T Consensus 5 ~i~~~------vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~-~G~CGaCtV~vd 55 (166)
T 1n62_A 5 HIELT------INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDLD 55 (166)
T ss_dssp EEEEE------ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred eEEEE------ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCC-CCCCCCCEEEEC
Confidence 57787 68874 5678999999999985 664 678998 899999999994
No 31
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.39 E-value=6e-07 Score=60.85 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=38.9
Q ss_pred EEEEEeCCccCCCCcE--EEeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGAI--FNENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~--i~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
+|+|. .+|+. +++++++|||++|++. |+. ..+.|+ .|.||+|.|.|.
T Consensus 5 ~i~~~------vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~-~G~CGaCtV~vd 55 (163)
T 1ffv_A 5 IITVN------VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDID 55 (163)
T ss_dssp EEEEE------ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEET
T ss_pred eEEEE------ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCC-CCCCCCCEEEEC
Confidence 57787 68874 5778999999999984 653 678999 899999999984
No 32
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.38 E-value=6.8e-07 Score=60.45 Aligned_cols=47 Identities=19% Similarity=0.431 Sum_probs=39.9
Q ss_pred EEEEEeCCccCCCCc--EEEeCCCChHHHHHHhC-CC-CccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGA--IFNENSGISLCDALLKN-SI-FIEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~-gi-~i~~~C~G~G~CgtC~v~v~ 56 (109)
+|+|. .+|+ ++++++++|||++|++. |+ ...+.|+ .|.||+|.|.|.
T Consensus 5 ~i~~~------vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~vd 55 (160)
T 3hrd_D 5 TINLN------LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIFN 55 (160)
T ss_dssp EEEEE------ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEET
T ss_pred eEEEE------ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEEC
Confidence 57776 6786 56789999999999986 77 4788998 899999999985
No 33
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.31 E-value=1.2e-06 Score=59.16 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=40.0
Q ss_pred EEEEEeCCccCCCCcEE--EeCCCChHHHHHHhC-CC-CccccCCCCCCCCccEEEecCC
Q psy8859 3 QVIVLPHPVLCEDGAIF--NENSGISLCDALLKN-SI-FIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i--~~~~g~tLl~a~~~~-gi-~i~~~C~G~G~CgtC~v~v~~g 58 (109)
+|+|. .+|+.+ ++++++|||++|++. |+ .....|+ .|.||+|.|.| +|
T Consensus 4 ~i~~~------vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~-~G~CGaCtV~v-dG 55 (161)
T 1rm6_C 4 ILRLT------LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLV-DD 55 (161)
T ss_dssp EEEEE------ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEE-TT
T ss_pred eEEEE------ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCC-CCCCCCCEEEE-CC
Confidence 57777 688865 458999999999997 76 4788999 89999999999 45
No 34
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.99 E-value=5.2e-06 Score=59.29 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=31.4
Q ss_pred EEEeCC-CChHHHHHHhCCC------CccccCCCCCCCCccEEEecCC
Q psy8859 18 IFNENS-GISLCDALLKNSI------FIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 18 ~i~~~~-g~tLl~a~~~~gi------~i~~~C~G~G~CgtC~v~v~~g 58 (109)
++++++ |+|||++|++.++ ...++|+ .|.||+|.|.| +|
T Consensus 34 ~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i-~G 79 (252)
T 2h88_B 34 EVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNI-AG 79 (252)
T ss_dssp EEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEE-TT
T ss_pred EEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEE-CC
Confidence 466777 9999999999873 2345898 89999999996 45
No 35
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.81 E-value=1.4e-05 Score=56.37 Aligned_cols=39 Identities=18% Similarity=0.446 Sum_probs=33.3
Q ss_pred EEEeCC--CChHHHHHHhCC-----CCccccCCCCCCCCccEEEecCC
Q psy8859 18 IFNENS--GISLCDALLKNS-----IFIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 18 ~i~~~~--g~tLl~a~~~~g-----i~i~~~C~G~G~CgtC~v~v~~g 58 (109)
++++++ |+|||++|++.+ +...++|+ .|.||+|.|.| +|
T Consensus 24 ~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G 69 (238)
T 2wdq_B 24 TLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNM-NG 69 (238)
T ss_dssp EEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEE-TT
T ss_pred EeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEE-CC
Confidence 577888 999999999987 34567998 89999999998 45
No 36
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.65 E-value=9.4e-05 Score=57.27 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=39.5
Q ss_pred EEEEEeCCccCCCCcEEEe---CCCChHHHHHHhCCCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGAIFNE---NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~~---~~g~tLl~a~~~~gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
+|+|. .+|+.+++ +++++||+++++.|+. ...+|+ .|.||+|.|.|.
T Consensus 2 ~~~~~------vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~-~G~CGaCtV~v~ 52 (462)
T 2w3s_A 2 EIAFL------LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCN-EGDCGACTVMIR 52 (462)
T ss_dssp EEEEE------ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEEE
T ss_pred cEEEE------ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCC-CCCcCCcEEEEE
Confidence 57887 68986655 6899999999976774 778999 899999999993
No 37
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.62 E-value=9.3e-05 Score=61.42 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=42.1
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhC-CC-CccccCCCCCCCCccEEEecCC
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKN-SI-FIEHACEKSCACATCHVIIREG 58 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~-gi-~i~~~C~G~G~CgtC~v~v~~g 58 (109)
|.+|+|. .+|+ +++++++++||++|++. |+ ....+|+ .|.||+|.|.| +|
T Consensus 1 ~~~~~~~------~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~g~CGaCtv~v-dg 54 (907)
T 1vlb_A 1 MIQKVIT------VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVIL-DG 54 (907)
T ss_dssp CEEEEEE------ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE-TT
T ss_pred CceEEEE------ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCC-CCCcCccEEEE-CC
Confidence 6788998 6887 56778999999999984 65 4788999 89999999998 45
No 38
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=97.61 E-value=7.4e-05 Score=50.58 Aligned_cols=47 Identities=17% Similarity=0.468 Sum_probs=38.8
Q ss_pred EEEEEeCCccCCCCcEE---EeCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGAIF---NENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i---~~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
.|+|. .+|+.+ +++++++||+.|++. |+- ....|+ .|.||.|.|.|.
T Consensus 4 ~i~~~------vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlvd 55 (164)
T 3nvw_A 4 ELVFF------VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS 55 (164)
T ss_dssp CEEEE------ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred eEEEE------ECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEEc
Confidence 46676 578754 578999999999985 764 778998 899999999996
No 39
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=97.55 E-value=0.00011 Score=61.09 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=41.6
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhC-CC-CccccCCCCCCCCccEEEec
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKN-SI-FIEHACEKSCACATCHVIIR 56 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~-gi-~i~~~C~G~G~CgtC~v~v~ 56 (109)
|.+|+|. .+|+ +++++++++||++|++. |+ ....+|+ .|.||+|.|.|.
T Consensus 1 ~~~~~~~------~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~G~CGaCtv~vd 53 (907)
T 1dgj_A 1 METKTLI------VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVILD 53 (907)
T ss_dssp CEEEECE------ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEET
T ss_pred CceEEEE------ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCC-CCCcCceEEEEC
Confidence 6778887 6886 67889999999999984 66 4678999 899999999993
No 40
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00024 Score=54.63 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=37.6
Q ss_pred CEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccC---CCCCC--CCccEEEec
Q psy8859 2 PQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHAC---EKSCA--CATCHVIIR 56 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C---~G~G~--CgtC~v~v~ 56 (109)
.+|+|. .||+.+++.+|+||++|++++|+++...+ ...|. |+.|.|.|.
T Consensus 14 ~~v~~~------~dg~~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~ 67 (493)
T 1y56_A 14 KKVTIY------FEGKELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVN 67 (493)
T ss_dssp CEEEEE------ETTEEEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSS
T ss_pred CeEEEE------ECCEEEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEEC
Confidence 468888 69999999999999999999999752211 21233 788999774
No 41
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.17 E-value=0.0004 Score=50.65 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=31.5
Q ss_pred EEEeCC-CChHHHHHHhCCCC------ccccCCCCCCCCccEEEecCCc
Q psy8859 18 IFNENS-GISLCDALLKNSIF------IEHACEKSCACATCHVIIREGF 59 (109)
Q Consensus 18 ~i~~~~-g~tLl~a~~~~gi~------i~~~C~G~G~CgtC~v~v~~g~ 59 (109)
++++++ |.|||++|++.+.. ...+|+ .|.||+|.|.|- |.
T Consensus 58 ~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~In-G~ 104 (282)
T 3vr8_B 58 DVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICGSCAMNIA-GE 104 (282)
T ss_pred EEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCCCCEEEEC-CE
Confidence 466777 99999999986642 236898 799999999874 53
No 42
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=96.79 E-value=0.0025 Score=53.00 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=41.0
Q ss_pred CEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCCccccC-----------CCCCCCCccEEEec
Q psy8859 2 PQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHAC-----------EKSCACATCHVIIR 56 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~i~~~C-----------~G~G~CgtC~v~v~ 56 (109)
.+|+|. .+|+++++.+|+||..||+.+|+.+...| . .|.|..|.|.+.
T Consensus 21 ~~~~~~------~dG~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~-~~~c~~~~v~v~ 79 (965)
T 2gag_A 21 EALSLT------VDGAKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAA-GVEEPNALVTVS 79 (965)
T ss_dssp EEEEEE------ETTEEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCS-STTCCSCEEEEC
T ss_pred CeEEEE------ECCEEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccC-CccCCceEEEEc
Confidence 467887 69999999999999999999999865444 4 478999999998
No 43
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=96.03 E-value=0.0093 Score=51.43 Aligned_cols=47 Identities=15% Similarity=0.426 Sum_probs=39.0
Q ss_pred EEEEEeCCccCCCCcEEE---eCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEec
Q psy8859 3 QVIVLPHPVLCEDGAIFN---ENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIR 56 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~---~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~ 56 (109)
.|+|. .+|+.++ +++..+||+.|++. |+- ....|+ .|.||.|.|.|.
T Consensus 5 ~i~~~------vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~~ 56 (1332)
T 3unc_A 5 ELVFF------VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVMLS 56 (1332)
T ss_dssp CEEEE------ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEEE
T ss_pred cEEEE------ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEEe
Confidence 47776 6888654 78999999999985 775 678998 899999999994
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=94.75 E-value=0.05 Score=46.94 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=38.7
Q ss_pred EEEEEeCCccCCCCcEEE---eCCCChHHHHHHhC-CCC-ccccCCCCCCCCccEEEecC
Q psy8859 3 QVIVLPHPVLCEDGAIFN---ENSGISLCDALLKN-SIF-IEHACEKSCACATCHVIIRE 57 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~~i~---~~~g~tLl~a~~~~-gi~-i~~~C~G~G~CgtC~v~v~~ 57 (109)
.++|. -+|+.+. +++..|||+-|+.+ ++- -...|+ .|-||.|.|.|..
T Consensus 9 ~l~F~------vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~-EG~CGACtV~v~~ 61 (1335)
T 3zyv_A 9 ELIFF------VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCG-GGDCGACTVMISR 61 (1335)
T ss_dssp CEEEE------ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEEEE
T ss_pred eEEEE------ECCEEEEeCCCCcCccHHHHHhccCCCcccccccC-CCCCcceEEEEee
Confidence 37777 6888765 45899999999985 664 567999 8999999999963
No 45
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=84.39 E-value=1.2 Score=25.63 Aligned_cols=22 Identities=5% Similarity=-0.084 Sum_probs=19.6
Q ss_pred EEEeCCCChHHHHHHhCCCCcc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
.+++++|.|+.|.+.+.|++..
T Consensus 14 ~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 14 EVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEECSTTCSHHHHHHTTCCCSS
T ss_pred eEEcCCCCcHHHHHHHcCCCcc
Confidence 4899999999999999999753
No 46
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=81.42 E-value=2.1 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=24.4
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCccccCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIEHACE 43 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~~~C~ 43 (109)
|+|..++.+.|.|.+|+|.+-+-.+...|-
T Consensus 13 P~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v 42 (78)
T 3hvz_A 13 PKGDVISLPIGSTVIDFAYAIHSAVGNRMI 42 (78)
T ss_dssp TTSCEEEEETTCBHHHHHHHHCHHHHHTEE
T ss_pred CCCCEEEecCCCCHHHHHHHhhhhhhcceE
Confidence 899999999999999999876555554444
No 47
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.28 E-value=2.4 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=21.7
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCCcc
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
|+|..++++.|.|+++.+.+.+..+.
T Consensus 8 p~g~~~~~~~g~T~~dla~~i~~~l~ 33 (73)
T 2kmm_A 8 PKGEIKRLPQGATALDFAYSLHSDLG 33 (73)
T ss_dssp TTCCEEEECTTCBHHHHHHHHCSHHH
T ss_pred CCCCEEEcCCCCcHHHHHHHHhhccc
Confidence 78999999999999999988755443
No 48
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=80.06 E-value=1.7 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=22.9
Q ss_pred CCCcEEEeCC-CChHHHHHHhCCCCccccC
Q psy8859 14 EDGAIFNENS-GISLCDALLKNSIFIEHAC 42 (109)
Q Consensus 14 ~~g~~i~~~~-g~tLl~a~~~~gi~i~~~C 42 (109)
|+|..++++. |.|+++.+...+-.+...+
T Consensus 17 pdG~~~~~~~~~~T~~dia~~i~~~l~~~~ 46 (88)
T 1wwt_A 17 PDGKQVDAESWKTTPYQIACGISQGLADNT 46 (88)
T ss_dssp TTSCEEEEETTTCCHHHHHHHSSTTTGGGC
T ss_pred CCCCEEEcccCCCCHHHHHHHhhhccccce
Confidence 7888888887 9999999988765555444
No 49
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=76.93 E-value=2.3 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=20.9
Q ss_pred CCCcEEEeCCC-ChHHHHHHhCCCC
Q psy8859 14 EDGAIFNENSG-ISLCDALLKNSIF 37 (109)
Q Consensus 14 ~~g~~i~~~~g-~tLl~a~~~~gi~ 37 (109)
.+|+.++++++ .||.+.+...+++
T Consensus 25 vNGe~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 25 LNGKDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp ETTEEECCSSSCCBHHHHHHHTTCT
T ss_pred ECCEEEECCCCCCcHHHHHHHhCCC
Confidence 37889999998 9999999998865
No 50
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=76.25 E-value=1.8 Score=30.00 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred hHHHHHHhCCCCcc------ccCCCCCCCCccEEEec
Q psy8859 26 SLCDALLKNSIFIE------HACEKSCACATCHVIIR 56 (109)
Q Consensus 26 tLl~a~~~~gi~i~------~~C~G~G~CgtC~v~v~ 56 (109)
.+.+ +.+.|++.. -.|+ .|.|+.|.+...
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACG-IGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCc-ccccccCCcccc
Confidence 4455 666788632 4676 899999999875
No 51
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=75.72 E-value=3.4 Score=24.24 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=24.4
Q ss_pred CCCc--EEEeCCCChHHHHHHhC-CCCccccCCCCCCCCccEEEec
Q psy8859 14 EDGA--IFNENSGISLCDALLKN-SIFIEHACEKSCACATCHVIIR 56 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~-gi~i~~~C~G~G~CgtC~v~v~ 56 (109)
|++. .|++.+|.||.+|+.++ .. + .-.+-.|.|...
T Consensus 9 Pn~QrT~V~VrpG~tlrdaL~KaLk~------R-~L~pe~C~V~~~ 47 (77)
T 1c1y_B 9 PNKQRTVVNVRNGMSLHDCLMKALKV------R-GLQPECCAVFRL 47 (77)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHT------T-TCCGGGEEEEEE
T ss_pred CCCceEEEEecCCcCHHHHHHHHHHH------c-CCCHHHeEEEEe
Confidence 7774 69999999999987654 11 1 124566777755
No 52
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=73.79 E-value=2.4 Score=25.55 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=21.7
Q ss_pred EEEEEeCCccCCCCc--EEEeCCCChHHHHHH----hCCCC
Q psy8859 3 QVIVLPHPVLCEDGA--IFNENSGISLCDALL----KNSIF 37 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~----~~gi~ 37 (109)
.|+++. ++++ +|.+.++.+|.|++. +.|++
T Consensus 11 ~v~Vl~-----~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLA-----PNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEEC-----TTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEc-----CCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 467764 7886 688899999888654 45664
No 53
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=72.47 E-value=3.5 Score=23.85 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=21.0
Q ss_pred CCcEEEeC--CCChHHHHHHhCCCC
Q psy8859 15 DGAIFNEN--SGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~--~g~tLl~a~~~~gi~ 37 (109)
+|+.++++ .+.||.+.+.+.|++
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHHTCS
T ss_pred CCEEEEcCCCCCCcHHHHHHHcCCC
Confidence 68889998 899999999999987
No 54
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=71.25 E-value=5.9 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEEeCCccCCCCc----EEEeCCCChHHHHHHhCC
Q psy8859 3 QVIVLPHPVLCEDGA----IFNENSGISLCDALLKNS 35 (109)
Q Consensus 3 ~V~~~~~~~~~~~g~----~i~~~~g~tLl~a~~~~g 35 (109)
+|++.+ .++. +|. +.|+||+++|.++.
T Consensus 10 ~i~v~~-----~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 10 TVTVIH-----GDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp EEEEEC-----TTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred EEEEEc-----CCCceeEEEEc-CCccHHHHHHHHcC
Confidence 466664 4443 567 89999999999998
No 55
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=71.14 E-value=3.5 Score=28.26 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNS 35 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~g 35 (109)
|.+|++ |+|..++++.|.|+++.+.+.+
T Consensus 1 ~i~I~~-------p~G~~~~~~~g~T~~dia~~i~ 28 (224)
T 1tke_A 1 MPVITL-------PDGSQRHYDHAVSPMDVALDIG 28 (224)
T ss_dssp CCEEEC-------TTSCEEECSSCBCHHHHHHHHC
T ss_pred CeEEEe-------CCCCEEEecCCCCHHHHHHHHh
Confidence 556665 7899999999999999987753
No 56
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=70.43 E-value=5.1 Score=24.39 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCc--EEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEec
Q psy8859 14 EDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIR 56 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~ 56 (109)
|++. .|++.+|.||.+|+.++ ... + .-.+-.|.|...
T Consensus 25 PNqQrT~V~VrpG~tlrdAL~Ka-Lk~----R-~L~pe~C~Vy~~ 63 (95)
T 2l05_A 25 PNKQRTVVPARCGVTVRDSLKKA-LMM----R-GLIPECCAVYRI 63 (95)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHH-HHH----H-TCCGGGEEEEEE
T ss_pred CCCCeEEEEecCCcCHHHHHHHH-HHH----c-CCCHHHcEEEEc
Confidence 7775 68999999999987654 000 1 124566677654
No 57
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=69.31 E-value=3.8 Score=24.53 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=24.2
Q ss_pred CCCc--EEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEec
Q psy8859 14 EDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIR 56 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~ 56 (109)
|++. .|++.+|.||.+|+.++ +.. + .-.+-.|.|...
T Consensus 15 Pn~QrT~V~VrpG~tlrdaL~Ka---Lk~--R-~L~pe~C~Vy~~ 53 (86)
T 1wxm_A 15 PNKQRTVVTVRDGMSVYDSLDKA---LKV--R-GLNQDCCVVYRL 53 (86)
T ss_dssp SSSCEEEEECCSSCBSHHHHHHH---HHT--T-TCCSSSEEEEEE
T ss_pred CCCCeEEEEecCCcCHHHHHHHH---HHH--c-CCCHHHeEEEEc
Confidence 7774 69999999999987653 000 1 123566777755
No 58
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=68.00 E-value=5.6 Score=22.62 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=19.8
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.+++ ++.||.+.+.+.|++
T Consensus 6 NG~~~e~-~~~Tl~~LL~~l~~~ 27 (73)
T 2kl0_A 6 NGEQREV-QSASVAALMTELDCT 27 (73)
T ss_dssp TTEEECC-CCSBHHHHHHHTTCC
T ss_pred CCEEEEc-CCCcHHHHHHHcCCC
Confidence 6888888 899999999999886
No 59
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=67.51 E-value=3.9 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.8
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHHHhCC
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNS 35 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~~~~g 35 (109)
|-+|.|++ +-|. +++++.++.||+.++.-|
T Consensus 7 ml~i~f~t-----~LG~~V~vdve~~~~~l~v~R~yG 38 (184)
T 3kdv_A 7 MLHIEFIT-----DLGAKVTVDVESADKLLDVQRQYG 38 (184)
T ss_dssp CEEEEEEC-----TTCCEEEEEESSGGGHHHHHHHHH
T ss_pred eEEEEEec-----CCCceEEEecCCHHHHHHHHHHhh
Confidence 67899997 6776 677889999999999843
No 60
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=67.10 E-value=4.8 Score=20.16 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.4
Q ss_pred cEEEeCCCChHHHHHHhCCCCcc
Q psy8859 17 AIFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
.+..+.+|+||-..+.+.|+.+.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~ 25 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIK 25 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHH
T ss_pred EEEEEcCCCcHHHHHHHHCcCHH
Confidence 46788999999999999988753
No 61
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=67.05 E-value=6.9 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCc--EEEeCCCChHHHHHHhC-CCCccccCCCCCCCCccEEEecC
Q psy8859 14 EDGA--IFNENSGISLCDALLKN-SIFIEHACEKSCACATCHVIIRE 57 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~-gi~i~~~C~G~G~CgtC~v~v~~ 57 (109)
|++. .|++.+|.||.+|+.++ .. + .-.+-.|.|....
T Consensus 21 PNqQrT~V~VrpG~tlrdaL~KaLk~------R-~L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 21 PNKQRTVVPARCGVTVRDSLKKALMM------R-GLIPECCAVYRIQ 60 (96)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHT------T-TCCGGGEEEEECC
T ss_pred CCCceEEEEecCCcCHHHHHHHHHHH------c-CCChHHeEEEEcc
Confidence 7775 68999999999987654 11 1 1245667777653
No 62
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=63.90 E-value=5.2 Score=21.98 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=20.3
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.++++.+.|+.+.+...+++
T Consensus 6 Ng~~~~~~~~~tv~~ll~~l~~~ 28 (66)
T 1f0z_A 6 NDQAMQCAAGQTVHELLEQLDQR 28 (66)
T ss_dssp SSCEECCCTTCCHHHHHHHHTCC
T ss_pred CCEEEEcCCCCcHHHHHHHcCCC
Confidence 68889999999999999988764
No 63
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=62.38 E-value=8 Score=22.66 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=18.7
Q ss_pred CCEEEEEeCCccCCCCc--EEE--eCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFN--ENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~--~~~g~tLl~a 30 (109)
|++|+|.+ ..|+ +++ +++.+|+.+.
T Consensus 1 mmqI~VKt-----l~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKK-----IQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEE-----CSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEc-----CCCCEEEEEEcCCCCCcHHHH
Confidence 89999987 6776 344 3389999875
No 64
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=61.33 E-value=9.1 Score=23.75 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCc--EEEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEec
Q psy8859 14 EDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIR 56 (109)
Q Consensus 14 ~~g~--~i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~ 56 (109)
|++. .|++.+|.||.||+.++ +.. + .-.+-.|.|...
T Consensus 26 PNqQrT~V~VrpG~tlrdaL~Ka-Lk~----R-~L~pe~C~Vy~~ 64 (107)
T 1rrb_A 26 PNKQRTVVNVRNGMSLHDCLMKA-LKV----R-GLQPECCAVFRL 64 (107)
T ss_dssp TTTCCEEEECCTTCBHHHHHHHH-HHH----H-TCCTTTEEEEEC
T ss_pred CCCCeEEEEecCCcCHHHHHHHH-HHH----c-CCCHHHceeEEc
Confidence 6664 79999999999987654 111 1 123566777765
No 65
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=58.68 E-value=7.2 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=17.8
Q ss_pred hHHHHHHhCCCC--c---cccCCCCCCCCcc
Q psy8859 26 SLCDALLKNSIF--I---EHACEKSCACATC 51 (109)
Q Consensus 26 tLl~a~~~~gi~--i---~~~C~G~G~CgtC 51 (109)
.-|+.+.+.|.- + +..|. .|.|++|
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~-sgsC~sC 64 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCL-SGSCKSC 64 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSC-SSSSSSC
T ss_pred HHHHHHHHCCCEEEEecCCCCCC-CCCCCCC
Confidence 457778888873 3 36897 4789988
No 66
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=57.53 E-value=16 Score=20.17 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=22.6
Q ss_pred CEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCCCC
Q psy8859 2 PQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
++|++... +..++++++.+.|+.+.+...+++
T Consensus 5 m~i~vNg~----~~~~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 5 MKFTVITD----DGKKILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp EEEEEEET----TEEEEEEESSCCBHHHHHHHTTCC
T ss_pred EEEEEeCc----cCceeEECCCCCcHHHHHHHhCCC
Confidence 36666531 122358999999999999998864
No 67
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.30 E-value=8.7 Score=23.36 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH----HHhCCCCcc
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA----LLKNSIFIE 39 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a----~~~~gi~i~ 39 (109)
|++|++.+ +.|+ ++++++..|+.+. ..+.|++..
T Consensus 28 mm~I~VKt-----l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 28 MIEVVCND-----RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp EEEEEEEC-----SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred eEEEEEEC-----CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 56788886 5565 6889999998765 344577644
No 68
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=52.87 E-value=12 Score=22.52 Aligned_cols=33 Identities=21% Similarity=0.004 Sum_probs=23.4
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH----HHhCCCCc
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA----LLKNSIFI 38 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a----~~~~gi~i 38 (109)
|.+|.+.+ +.|+ ++.+.+..|+.+. +.+.|++.
T Consensus 21 mIqI~Vk~-----~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 21 MIEVVVND-----RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp EEEEEEEC-----TTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred eEEEEEEC-----CCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 55777776 6776 6788999999865 34456654
No 69
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=51.07 E-value=7.6 Score=22.42 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=16.7
Q ss_pred HHHHHHhCCCC--c---cccCCCCCCCCccE
Q psy8859 27 LCDALLKNSIF--I---EHACEKSCACATCH 52 (109)
Q Consensus 27 Ll~a~~~~gi~--i---~~~C~G~G~CgtC~ 52 (109)
-|+.+.+.|.- + ...|. .|.|++|.
T Consensus 36 dL~~Le~~G~l~R~~~~GgaC~-~g~C~~C~ 65 (78)
T 1xn7_A 36 MLQQLESMGKAVRIQEEPDGCL-SGSCKSCP 65 (78)
T ss_dssp HHHHHHHHTSEEEECCCCCCCC-CSSCCCCC
T ss_pred HHHHHHHCCCEEEecCcCCCCC-CCCCCCCC
Confidence 46667777763 2 35787 57899884
No 70
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=48.39 E-value=13 Score=22.25 Aligned_cols=25 Identities=4% Similarity=0.007 Sum_probs=17.4
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
|++|+|.+ .+|+ .|++.+..|+.+.
T Consensus 1 mm~I~Vk~-----~~g~~~~l~v~~~~TV~~L 27 (106)
T 3m62_B 1 MVSLTFKN-----FKKEKVPLDLEPSNTILET 27 (106)
T ss_dssp --CEEEEC-----TTCCEEEECCCTTSBHHHH
T ss_pred CEEEEEEe-----CCCCEEEEEECCCCcHHHH
Confidence 78999985 5676 4677788888874
No 71
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.19 E-value=15 Score=21.32 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=18.5
Q ss_pred CCEEEEEeCCccCCCCc----EE-EeCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA----IF-NENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~----~i-~~~~g~tLl~a 30 (109)
|++|+|.+ ..|+ ++ ++++..|+.+.
T Consensus 10 ~M~I~Vk~-----~~g~~~~~~l~~v~~~~TV~~l 39 (88)
T 2dzj_A 10 HYEVEILD-----AKTREKLCFLDKVEPHATIAEI 39 (88)
T ss_dssp CEEEEEEE-----SSSCCCCEEEEEECSSCBHHHH
T ss_pred EEEEEEEC-----CCCCEEeeEEeEcCCCCcHHHH
Confidence 67888986 4554 36 89999997664
No 72
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.02 E-value=13 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEeCCCChHHHHHHhCCCCcc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
+..+.+|+||...+.+.|+.+.
T Consensus 17 ~y~V~~GDTL~~IA~~~~~~~~ 38 (77)
T 2djp_A 17 EHQLEPGDTLAGLALKYGVTME 38 (77)
T ss_dssp EECCCTTCCHHHHHHHHTCCHH
T ss_pred EEEECCCCcHHHHHHHHCcCHH
Confidence 4778999999999999988753
No 73
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=38.61 E-value=19 Score=19.48 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.1
Q ss_pred CCcEEEeCCCChHHHHHHhCCCC
Q psy8859 15 DGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 15 ~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
+|+.+++ ++.|+.+.+...+++
T Consensus 5 Ng~~~~~-~~~tv~~ll~~l~~~ 26 (64)
T 2cu3_A 5 NGEPRPL-EGKTLKEVLEEMGVE 26 (64)
T ss_dssp TTEEECC-TTCCHHHHHHHHTBC
T ss_pred CCEEEEc-CCCcHHHHHHHcCCC
Confidence 7888888 899999999988765
No 74
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=38.27 E-value=22 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCEEEEEeCCccCCCCcEEEeCCCChHHHHHHhCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNS 35 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~g~tLl~a~~~~g 35 (109)
|.+||+ |+|...+++.|.|+++.+..-+
T Consensus 1 ~~~~~~-------~d~~~~~~~~~~t~~~~a~~i~ 28 (642)
T 1qf6_A 1 MPVITL-------PDGSQRHYDHAVSPMDVALDIG 28 (642)
T ss_dssp -CEEEC-------TTSCEEECSSCBCHHHHHHHHC
T ss_pred CceEEc-------CCCCeEEecCCCCHHHHHHHhc
Confidence 556776 7999999999999999997743
No 75
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.87 E-value=46 Score=20.14 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=18.3
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
+++|+|.. .+|+ ++++++..|+.+.
T Consensus 7 ~M~I~Vk~-----l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 7 GMTVRVCK-----MDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp SEEEEEEC-----SSSCEEEEEECTTCBHHHH
T ss_pred cEEEEEEe-----cCCCEEEEEECCCChHHHH
Confidence 35788875 5676 5788899998664
No 76
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=33.20 E-value=61 Score=17.81 Aligned_cols=25 Identities=0% Similarity=-0.144 Sum_probs=17.9
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
|++|++.+ .+|+ ++++.+..|+.+.
T Consensus 5 ~m~i~vk~-----~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 5 AVTITLKT-----LQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CEEEEEEE-----TTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEE-----CCCCEEEEEECCCCCHHHH
Confidence 45778875 4565 5788889988764
No 77
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=32.77 E-value=29 Score=21.88 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=14.1
Q ss_pred CCEEEEEeCCccCCCCcEEEeCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENS 23 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~ 23 (109)
|+.|++.+ .+|..|.+..
T Consensus 1 m~~v~L~S-----sDg~~f~v~~ 18 (141)
T 1fs1_B 1 MPSIKLQS-----SDGEIFEVDV 18 (141)
T ss_dssp -CEEEEEC-----TTSCEEEEEG
T ss_pred CCeEEEEe-----CCCCEEEecH
Confidence 89999996 6899888754
No 78
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=32.72 E-value=53 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=18.5
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
|.+|+|.+ ..|+ ++++++..|+.+.
T Consensus 17 ~m~I~vkt-----l~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 17 MINLRLIL-----VSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp CEEEEEEC-----TTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEEe-----CCCCEEEEEeCCccHHHHH
Confidence 35788875 4565 6888999998765
No 79
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=32.68 E-value=25 Score=23.60 Aligned_cols=18 Identities=6% Similarity=-0.213 Sum_probs=14.1
Q ss_pred hHHHHHHhCCC-Cc----cccCC
Q psy8859 26 SLCDALLKNSI-FI----EHACE 43 (109)
Q Consensus 26 tLl~a~~~~gi-~i----~~~C~ 43 (109)
-|++.+.+.|+ ++ .++|.
T Consensus 168 ei~~~a~~~gl~~~~~~~t~sC~ 190 (232)
T 2pg3_A 168 ETWALADYYQQLDTVRYHTLTCY 190 (232)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCCT
T ss_pred HHHHHHHHcCCCcccccccCCCc
Confidence 58888999998 53 57885
No 80
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=32.58 E-value=59 Score=17.72 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=21.9
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHH----HhCCCCc
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDAL----LKNSIFI 38 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~----~~~gi~i 38 (109)
+++|++.+ .+|+ .+++++..|+.+.- .+.|++.
T Consensus 3 ~m~i~vk~-----~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 3 HMQIFVKT-----LTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp CEEEEEEC-----TTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEc-----CCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 35778875 5665 57888999987752 3345554
No 81
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=32.45 E-value=17 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEeCCCChHHHHHHhCCCCcc
Q psy8859 18 IFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
.+++++|.|+.+++...|+.-.
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~ 50 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQ 50 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHH
T ss_pred EEEcCCCCcHHHHHHHcCCCcc
Confidence 5688999999999999998533
No 82
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=29.67 E-value=18 Score=16.92 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.0
Q ss_pred cccCCCCCCCC
Q psy8859 39 EHACEKSCACA 49 (109)
Q Consensus 39 ~~~C~G~G~Cg 49 (109)
...|.|.|.||
T Consensus 20 ecic~~~gycg 30 (30)
T 2ljs_A 20 ECICKGNGYCG 30 (30)
T ss_dssp TCCBCTTSBBC
T ss_pred hheeccCcccC
Confidence 34566777776
No 83
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=27.88 E-value=44 Score=21.70 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.9
Q ss_pred EEEeCCCChHHHHHHhCCCCc
Q psy8859 18 IFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 18 ~i~~~~g~tLl~a~~~~gi~i 38 (109)
+..+..|+||.+.|++.++..
T Consensus 4 ~y~V~~GdtL~~IA~~f~~g~ 24 (165)
T 4a1k_A 4 TYQVKQGDTLNSIAADFRIST 24 (165)
T ss_dssp EEECCTTCCHHHHHHHTTCCH
T ss_pred EEEECCCCCHHHHHHHhCCCH
Confidence 567899999999999988853
No 84
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=27.66 E-value=37 Score=22.22 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=17.4
Q ss_pred ChHHHHHHhCCC-C----ccccCCCC---CCCCcc
Q psy8859 25 ISLCDALLKNSI-F----IEHACEKS---CACATC 51 (109)
Q Consensus 25 ~tLl~a~~~~gi-~----i~~~C~G~---G~CgtC 51 (109)
+-|.+.+.+.|+ + ..++|... -.||.|
T Consensus 164 ~ei~~~a~~~glp~~~~~~t~sc~~~~~~~~CG~C 198 (219)
T 3bl5_A 164 AETWKLADELGALDFVKNNTLTCYNGIIADGCGEC 198 (219)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCSTTSCCSSCCSCS
T ss_pred HHHHHHHHHcCCCccchhheeeccCCCCCCCCCCC
Confidence 468888999999 3 24688522 136655
No 85
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.55 E-value=22 Score=24.45 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.0
Q ss_pred ChHHHHHHhCCCCccccCC
Q psy8859 25 ISLCDALLKNSIFIEHACE 43 (109)
Q Consensus 25 ~tLl~a~~~~gi~i~~~C~ 43 (109)
.-++++|+++|+.+|++=.
T Consensus 118 ~Ala~gAre~GL~iPhs~~ 136 (203)
T 3j21_O 118 FAVLKGAVDAGLNVPHSPE 136 (203)
T ss_dssp HHHHHHHHHHTCCCCCCSS
T ss_pred hhhhhhcccCCeecccCCc
Confidence 4689999999999998744
No 86
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.96 E-value=89 Score=17.18 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=20.7
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHHH----HhCCCC
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDAL----LKNSIF 37 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~----~~~gi~ 37 (109)
++|++.+ .+|+ ++++.+..|+.+.- ...|++
T Consensus 8 m~i~Vk~-----~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 44 (87)
T 1wh3_A 8 IQVFVKN-----PDGGSYAYAINPNSFILGLKQQIEDQQGLP 44 (87)
T ss_dssp EEEEEEE-----TTTEEEEEEECSSSBHHHHHHHHHHHTCCC
T ss_pred EEEEEEc-----CCCCEEEEEeCCCChHHHHHHHHHHHhCCC
Confidence 4677775 5666 57888999987743 345555
No 87
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=25.94 E-value=53 Score=21.44 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=19.4
Q ss_pred cEEEeCCCChHHHHHHhCCCCcc
Q psy8859 17 AIFNENSGISLCDALLKNSIFIE 39 (109)
Q Consensus 17 ~~i~~~~g~tLl~a~~~~gi~i~ 39 (109)
.+..|.+|+||-.++.+.|+.+.
T Consensus 63 ~~y~V~~GDTL~~IA~~~~~~~~ 85 (167)
T 2l9y_A 63 ATVTVQQGDTLRDIGRRFDCDFH 85 (167)
T ss_dssp EEEEECTTCCHHHHHHHTTCCHH
T ss_pred ceEEECCCCcHHHHHHHcCCCHH
Confidence 36889999999999999887653
No 88
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=25.49 E-value=66 Score=18.00 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=17.5
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|++.+ .+|+ .+++.+..|+.+.
T Consensus 6 m~i~Vk~-----~~g~~~~~~v~~~~tV~~l 31 (90)
T 4dwf_A 6 LEVLVKT-----LDSQTRTFIVGAQMNVKEF 31 (90)
T ss_dssp EEEEEEE-----TTCCEEEEEEETTCBHHHH
T ss_pred EEEEEEc-----CCCCEEEEEECCCCCHHHH
Confidence 4677775 5676 5788899998875
No 89
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=25.34 E-value=92 Score=17.48 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=17.6
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|++.+ ..|+ ++++++..|+.+.
T Consensus 11 ~~i~vk~-----l~g~~~~l~v~~~~TV~~L 36 (84)
T 2kk8_A 11 MKFLVEN-----LNGSSFELEVDYRDTLLVV 36 (84)
T ss_dssp EEEEEEE-----TTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEe-----cCCcEEEEEECCCChHHHH
Confidence 4677765 5666 5788999998775
No 90
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=24.98 E-value=17 Score=28.79 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=19.4
Q ss_pred CCCcEEEeCCCChHHHHHHhCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSI 36 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi 36 (109)
|+|...+++.|.|+++.+..-+-
T Consensus 9 ~dg~~~~~~~g~t~~~ia~~~~~ 31 (645)
T 1nyr_A 9 PDGNKKAFDKGTTTEDIAQSISP 31 (645)
T ss_dssp TTSCCCBCCTTCCHHHHHHTTCH
T ss_pred CCCCEEEecCCCCHHHHHHHhhh
Confidence 78888889999999999987543
No 91
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=24.79 E-value=1.1e+02 Score=18.11 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=22.1
Q ss_pred CEEEEEeCCccCCCCc-EEEeC-CCChHHHHHH----hCCCCc
Q psy8859 2 PQVIVLPHPVLCEDGA-IFNEN-SGISLCDALL----KNSIFI 38 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~-~i~~~-~g~tLl~a~~----~~gi~i 38 (109)
++|+|.+ ++|+ +|++. +..|+.+.-. ..||+.
T Consensus 8 M~irvrs-----~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~ 45 (107)
T 1wf9_A 8 TMLRVRS-----RDGLERVSVDGPHITVSQLKTLIQDQLQIPI 45 (107)
T ss_dssp EEEEEEC-----SSCEEEEEECCTTSBHHHHHHHHHHHSCCCT
T ss_pred EEEEEEC-----CCCCEEEEECCCCCcHHHHHHHHHHHhCcCc
Confidence 4688876 7786 68999 8999876533 345543
No 92
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=24.37 E-value=37 Score=23.02 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=15.3
Q ss_pred ChHHHHHHhCCCCccccC
Q psy8859 25 ISLCDALLKNSIFIEHAC 42 (109)
Q Consensus 25 ~tLl~a~~~~gi~i~~~C 42 (109)
.-++++|+++|+.+|++=
T Consensus 117 ~Ala~gAre~GL~fph~~ 134 (187)
T 1vq8_N 117 FAIQEGAIDAGLDIPHND 134 (187)
T ss_dssp HHHHHHHHHTTCBCCCCG
T ss_pred HHHHHHhhcCCEeccCCC
Confidence 468999999999999763
No 93
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=24.13 E-value=34 Score=19.49 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=19.0
Q ss_pred CEEEEEeCCccCCCCc-EEEeCCCChHHHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA-IFNENSGISLCDALL 32 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~-~i~~~~g~tLl~a~~ 32 (109)
+.|+|.. ++|. .|++++..|+-+...
T Consensus 5 m~lRvrs-----~~G~~Ri~v~~~~t~~~L~~ 31 (80)
T 2pjh_A 5 IIIRVQS-----PDGVKRITATKRETAATFLK 31 (80)
T ss_dssp CCCEEEC-----SSEEEECCCCSSCCHHHHHH
T ss_pred EEEEEEC-----CCCCEEEEcCCcChHHHHHH
Confidence 4688876 7885 688888888766543
No 94
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.03 E-value=62 Score=17.66 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=21.1
Q ss_pred CCEEEEEeCCccCCCCc--EEEeCCCChHHHHH----HhCCCCc
Q psy8859 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDAL----LKNSIFI 38 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~----~~~gi~i 38 (109)
+++|++.+ .+|+ ++++++..|+.+.- .+.|++.
T Consensus 3 ~m~i~vk~-----~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~ 41 (85)
T 3n3k_B 3 HMRIVVKT-----LMGRTIILEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp -CEEEEEC-----GGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEe-----CCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 35777875 4565 57888888887653 3346654
No 95
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=23.81 E-value=30 Score=19.37 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=19.8
Q ss_pred CCCcEEEeCCCChHHHHHHhCCCC
Q psy8859 14 EDGAIFNENSGISLCDALLKNSIF 37 (109)
Q Consensus 14 ~~g~~i~~~~g~tLl~a~~~~gi~ 37 (109)
.++.+++++++.|+.+.+...+++
T Consensus 20 ~n~~~~~~~~~~Tv~dLl~~L~~~ 43 (77)
T 1rws_A 20 NIEKEIEWREGMKVRDILRAVGFN 43 (77)
T ss_dssp CCCCCCCCCSSCCHHHHHHTTTCS
T ss_pred cCCEEEECCCCCcHHHHHHHhCCC
Confidence 356678888999999999998864
No 96
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=29.36 E-value=17 Score=18.42 Aligned_cols=23 Identities=22% Similarity=0.706 Sum_probs=16.8
Q ss_pred HHHHHHhCCCCccccCCCCCCCCcc
Q psy8859 27 LCDALLKNSIFIEHACEKSCACATC 51 (109)
Q Consensus 27 Ll~a~~~~gi~i~~~C~G~G~CgtC 51 (109)
+-+-.-++|..+.+.|. -+||.|
T Consensus 18 ~C~d~~~ng~~~r~~C~--kTCG~C 40 (40)
T 2lg4_A 18 FCKDSGRNGVKLRANCK--KTCGLC 40 (40)
Confidence 33334478889999998 488887
No 97
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=23.31 E-value=59 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=13.6
Q ss_pred CCEEEEEeCCccCCCCcEEEeCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENS 23 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~ 23 (109)
|..|++.+ .||.+|.+..
T Consensus 1 ~~~v~L~S-----sDg~~F~v~r 18 (97)
T 4ajy_C 1 MMYVKLIS-----SDGHEFIVKR 18 (97)
T ss_dssp -CEEEEEC-----TTCCEEEEEH
T ss_pred CeEEEEEe-----cCCcEEEecH
Confidence 77899986 7899888753
No 98
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=22.69 E-value=1.4e+02 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=18.9
Q ss_pred CCCcEEEeCCCChH---HHHHHhCCCC
Q psy8859 14 EDGAIFNENSGISL---CDALLKNSIF 37 (109)
Q Consensus 14 ~~g~~i~~~~g~tL---l~a~~~~gi~ 37 (109)
+++.++.+.+|.++ .+++..+|..
T Consensus 135 ~~~~~v~v~aGv~~~~l~~~l~~~Gl~ 161 (560)
T 1e8g_A 135 VEGAYCVVEPGVTYHDLHNYLEANNLR 161 (560)
T ss_dssp TTTTEEEECTTCBHHHHHHHHHHTTCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHcCCc
Confidence 67778999999765 4567788988
No 99
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=22.33 E-value=96 Score=16.26 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=20.3
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHHH----HhCCCC
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDAL----LKNSIF 37 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~----~~~gi~ 37 (109)
++|++.+ ++|+ .+++++..|+.+.- ...|++
T Consensus 1 M~i~vk~-----~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 1ndd_A 1 MLIKVKT-----LTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (76)
T ss_dssp CEEEEEC-----TTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEC-----CCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 3677775 5676 57888889887643 334555
No 100
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=22.21 E-value=85 Score=16.95 Aligned_cols=18 Identities=22% Similarity=0.056 Sum_probs=11.2
Q ss_pred CCEEEEEeCCccCCCCcEEEeCC
Q psy8859 1 MPQVIVLPHPVLCEDGAIFNENS 23 (109)
Q Consensus 1 M~~V~~~~~~~~~~~g~~i~~~~ 23 (109)
|..|++.+ |+|++++..+
T Consensus 1 ~~~vkvk~-----p~G~e~~L~P 18 (56)
T 3kxt_A 1 MKPVKVKT-----PAGKEAELVP 18 (56)
T ss_dssp CCCEEEEC-----TTSCEEEECC
T ss_pred CCceEeeC-----CCCCEEEEee
Confidence 56677766 6676665544
No 101
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=22.19 E-value=71 Score=24.65 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=26.3
Q ss_pred EEeCCCChHHHHHHhCCCCccccCCCCCCCCccEEEecCCcccCC
Q psy8859 19 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEIN 63 (109)
Q Consensus 19 i~~~~g~tLl~a~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~ 63 (109)
|++.++.|+||+|.+-. ..+|+ . +|.++| +|...+.
T Consensus 47 v~~~~~~~vLd~L~~ik---~l~fr-~----sCam~I-NG~~~la 82 (514)
T 3kwl_A 47 LEYQEDQYLLDLLKQLK---GVSYS-E----NIALKI-NQIAVFE 82 (514)
T ss_dssp EECCTTCBHHHHHTTST---TCCCC-S----SCCEEE-TTEEECS
T ss_pred EeCCCCCcHHHHHHHhh---hCeee-c----cceEEE-CCEehhh
Confidence 56678999999998866 55677 3 787776 5655454
No 102
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.00 E-value=1e+02 Score=16.50 Aligned_cols=31 Identities=13% Similarity=-0.030 Sum_probs=20.5
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHHH----HhCCCC
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDAL----LKNSIF 37 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a~----~~~gi~ 37 (109)
++|++.. .+|+ .+++.+..|+.+.- ...|++
T Consensus 8 m~i~vk~-----~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 8 MQLTVKA-----LQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp EEEEEEE-----TTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred EEEEEEe-----CCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4677765 5665 57888999987643 345654
No 103
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=21.74 E-value=1e+02 Score=19.18 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=23.0
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH----HHhCCCCc
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA----LLKNSIFI 38 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a----~~~~gi~i 38 (109)
++|++.+ .+|+ ++++.+..|+.+. ....|++.
T Consensus 3 m~i~vk~-----~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 40 (159)
T 3rt3_B 3 WDLTVKM-----LAGNEFQVSLSSSMSVSELKAQITQKIGVHA 40 (159)
T ss_dssp CEEEEEE-----TTSCEEEEECCTTCCHHHHHHHHHHHHCCCG
T ss_pred eEEEEEE-----CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 6788876 5676 5788899999876 34456654
No 104
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=21.72 E-value=64 Score=23.55 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=20.1
Q ss_pred CcEEEeCCCChHHHHHHhCCCCc
Q psy8859 16 GAIFNENSGISLCDALLKNSIFI 38 (109)
Q Consensus 16 g~~i~~~~g~tLl~a~~~~gi~i 38 (109)
-.+..+..|+||..++.+.|+..
T Consensus 7 ~~~~~Vk~GDTL~~Ia~r~gvs~ 29 (361)
T 2gu1_A 7 RIHYMVKVGDTLSGIFAQLGVPY 29 (361)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCH
T ss_pred ceEEEECCCCcHHHHHHHcCCCH
Confidence 35788999999999999999974
No 105
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=21.63 E-value=1e+02 Score=16.19 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=17.0
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|++.. ++|+ .+++++..|+.+.
T Consensus 1 M~i~vk~-----~~g~~~~i~v~~~~tv~~l 26 (76)
T 3a9j_A 1 MQIFVKT-----LTGKTITLEVEPSDTIENV 26 (76)
T ss_dssp CEEEEEE-----TTSCEEEEECCTTCBHHHH
T ss_pred CEEEEEc-----CCCCEEEEEECCCCcHHHH
Confidence 3677765 5666 5788888888764
No 106
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=21.47 E-value=1.2e+02 Score=16.98 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=36.6
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH----HHhCCCCccccCCCCCCCCccEEEecCCcccCCCCCHHHHhhchh
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA----LLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNK 75 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a----~~~~gi~i~~~C~G~G~CgtC~v~v~~g~~~l~~~~~~E~~~L~~ 75 (109)
++|++.+ .+|+ ++++++..|+.+. ....|++.... + -+..|.. +. +...|.
T Consensus 1 M~I~Vk~-----~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q----------r-Li~~Gk~-L~-----D~~tL~- 57 (88)
T 4fbj_B 1 MLIKVKT-----LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ----------R-LIYSGKQ-MN-----DEKTAA- 57 (88)
T ss_dssp CEEEEEE-----TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGC----------E-EEETTEE-CC-----TTSBTT-
T ss_pred CEEEEEc-----CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHE----------E-EEECCeE-CC-----CCCcHH-
Confidence 3677775 5676 5678888888764 23356654321 0 1112321 11 123455
Q ss_pred cCCCCCCeEEeeeeEeeCCCE
Q psy8859 76 AWGLEENSRLSCQVILGSSDL 96 (109)
Q Consensus 76 ~~~~~~~~rLaCq~~~~~~di 96 (109)
...+.++..|-...+.. ++.
T Consensus 58 ~~~i~~g~~l~l~~rl~-Gg~ 77 (88)
T 4fbj_B 58 DYKILGGSVLHLVLALR-GGG 77 (88)
T ss_dssp TTTCCTTCEEEEECBCC----
T ss_pred HcCCCCCCEEEEEEECC-CCC
Confidence 34566777777666665 443
No 107
>1rju_V Metallothionein; Cu(I)-thiolate, metal binding protein; 1.44A {Synthetic} SCOP: g.46.1.1 PDB: 1aoo_A 1aqq_A 1aqr_A 1fmy_A
Probab=20.70 E-value=30 Score=16.57 Aligned_cols=7 Identities=43% Similarity=1.754 Sum_probs=4.4
Q ss_pred CCCCccE
Q psy8859 46 CACATCH 52 (109)
Q Consensus 46 G~CgtC~ 52 (109)
..||+|+
T Consensus 5 cqcgsck 11 (36)
T 1rju_V 5 CQCGSCK 11 (36)
T ss_dssp CCSTTTT
T ss_pred cccCCcc
Confidence 4577775
No 108
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=20.69 E-value=89 Score=17.50 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=17.3
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|++.+ .+|+ ++++++..|+.+.
T Consensus 5 m~I~Vk~-----~~g~~~~~~v~~~~TV~~L 30 (88)
T 2hj8_A 5 LSILVRN-----NKGRSSTYEVRLTQTVAHL 30 (88)
T ss_dssp EEEEEEE-----TTSCEEEEEEESSSBHHHH
T ss_pred EEEEEEC-----CCCCEEEEEECCCCcHHHH
Confidence 4677775 5666 5788889998775
No 109
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.33 E-value=1.3e+02 Score=17.06 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=17.1
Q ss_pred CEEEEEeCCccCCCCc--EEEeCCCChHHHH
Q psy8859 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDA 30 (109)
Q Consensus 2 ~~V~~~~~~~~~~~g~--~i~~~~g~tLl~a 30 (109)
++|++.+ .+|+ ++++.+..|+.+.
T Consensus 1 M~I~Vk~-----~~g~~~~~~v~~~~TV~~L 26 (95)
T 1uel_A 1 MQVTLKT-----LQQQTFKIDIDPEETVKAL 26 (95)
T ss_dssp CEEEEEE-----TTCCEEEEECCTTSBHHHH
T ss_pred CEEEEEe-----CCCCEEEEEECCCCHHHHH
Confidence 3677775 5666 5788888888764
No 110
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=20.17 E-value=49 Score=16.23 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=10.7
Q ss_pred ccCCCCCCCCccEEEe
Q psy8859 40 HACEKSCACATCHVII 55 (109)
Q Consensus 40 ~~C~G~G~CgtC~v~v 55 (109)
+.|- |.|.+|+...
T Consensus 12 sdcp--gfcktckaef 25 (41)
T 1bi6_H 12 SDCP--GFCKTCKAEF 25 (41)
T ss_dssp SSCC--TTCSSEEEET
T ss_pred cCCc--hHHHHHHHHh
Confidence 4565 7899999875
No 111
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.06 E-value=1.8e+02 Score=22.09 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=19.2
Q ss_pred CCCcEEEeCCCCh---HHHHHHhCCCCc
Q psy8859 14 EDGAIFNENSGIS---LCDALLKNSIFI 38 (109)
Q Consensus 14 ~~g~~i~~~~g~t---Ll~a~~~~gi~i 38 (109)
+++.++.+.+|.+ |.+++.++|+.+
T Consensus 120 ~~~~~v~v~aGv~~~~l~~~l~~~Gl~~ 147 (520)
T 1wvf_A 120 PEMCYALVEPGVTFGQMYDYIQENNLPV 147 (520)
T ss_dssp TTTTEEEECTTCCHHHHHHHHHHTTCSE
T ss_pred CCCCEEEECCCCCHHHHHHHHHHcCCcc
Confidence 6677899999976 455677889864
Done!