RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8859
(109 letters)
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli}
SCOP: d.15.4.1
Length = 111
Score = 159 bits (405), Expect = 1e-52
Identities = 64/109 (58%), Positives = 83/109 (76%)
Query: 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 60
MP++++LPH LC DGA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF+
Sbjct: 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFD 60
Query: 61 EINKANEVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIPRYTINQVK 109
+ +++E E+DML+KAWGLE SRLSCQ + DL +EIPRYTIN +
Sbjct: 61 SLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAR 109
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster
biosynthes pseudomonas, metal binding protein; 1.90A
{Pseudomonas putida}
Length = 113
Score = 157 bits (398), Expect = 1e-51
Identities = 50/109 (45%), Positives = 68/109 (62%)
Query: 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 60
MP V LPH C +G G ++ + + I +E AC AC TCH I+R+GF+
Sbjct: 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFD 60
Query: 61 EINKANEVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIPRYTINQVK 109
+ +A+E+EEDML+KAWGLE SRL CQV + DLTIEIP+Y++N
Sbjct: 61 SLEEADELEEDMLDKAWGLEAQSRLGCQVFVADEDLTIEIPKYSLNHAA 109
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport,
iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Length = 109
Score = 106 bits (267), Expect = 1e-31
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 1 MPQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREG 58
+ V+ + G + G ++ ++ + +E ACE S AC+TCHV + E
Sbjct: 5 VVNVVFVDR-----SGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSED 59
Query: 59 -FNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSS--DLTIEIPRYT 104
+ + E E+DML+ A L+ENSRL CQ++L +P+ T
Sbjct: 60 HLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKIT 108
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur,
iron, transport, ferredoxin, adrenodoxin-like, electron
transport; 2.60A {Schizosaccharomyces pombe}
Length = 103
Score = 105 bits (264), Expect = 3e-31
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 22 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIR-EGFNEINKANEVEEDMLNKAWGLE 80
N G S+ D N+I +E ACE S AC+TCHVI+ E + ++ E EEDML+ A+GLE
Sbjct: 21 NEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
E SRL CQV+L + + IP
Sbjct: 81 ETSRLGCQVLLRKDLDGIRVRIP 103
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol
SIDE CHA cleavage, structural genomics; HET: HEM HC9;
2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A
1e6e_B* 1cje_A
Length = 123
Score = 103 bits (260), Expect = 2e-30
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 22 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 78
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+G
Sbjct: 23 KVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82
Query: 79 LEENSRLSCQVILGSS--DLTIEIPRYTIN 106
L + SRL CQ+ L S ++T+ +P +
Sbjct: 83 LTDRSRLGCQICLTKSMDNMTVRVPETVAD 112
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular
electron TRA electron transport, metal-binding; HET:
RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A
3n9y_C* 2jqr_B* 3na0_C*
Length = 108
Score = 98.8 bits (247), Expect = 1e-28
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 22 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 78
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 24 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83
Query: 79 LEENSRLSCQVILGSS--DLTIEIP 101
L + SRL CQ+ L + ++T+ +P
Sbjct: 84 LTDRSRLGCQICLTKAMDNMTVRVP 108
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur,
metal-binding, electron transport; 2.01A
{Rhodopseudomonas palustris}
Length = 126
Score = 88.1 bits (219), Expect = 3e-24
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 1 MPQVIVLPHPVLCEDGAI--FNENSGISLCDALLKNSI-FIEHACEKSCACATCHVIIRE 57
M ++ + H G G ++ +A ++N+I +E C +CACATCHV + E
Sbjct: 21 MAKINFVDH-----TGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDE 75
Query: 58 G-FNEINKANEVEEDMLNKAWGLEENSRLSCQVILGSS--DLTIEIPRYT 104
++ + +EEDML+ + + NSRLSCQ+ + + L + P
Sbjct: 76 AWREKVGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNELDGLIVTTPERQ 125
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A
{Novosphingobium aromaticivorans}
Length = 104
Score = 81.5 bits (202), Expect = 6e-22
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 23 SGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 80
G+SL +AL I + C C+CATCHV++ + + + E D+L+ +
Sbjct: 19 PGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRT 78
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+SRLSCQ+ + L +EI
Sbjct: 79 PHSRLSCQITINDKLEGLEVEIA 101
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A
{Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A
1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C*
1put_A 1gpx_A
Length = 106
Score = 81.1 bits (201), Expect = 1e-21
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWGLE 80
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
NSRL CQ+I+ + +++P
Sbjct: 80 PNSRLCCQIIMTPELDGIVVDVP 102
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR
{Pseudomonas SP} SCOP: d.15.4.1
Length = 105
Score = 81.1 bits (201), Expect = 1e-21
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKA-WGLE 80
G SL + +N + I C SC CATC + I + + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
+RLSCQV + S L + +P
Sbjct: 80 AGTRLSCQVFIDPSMDGLIVRVP 102
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding,
iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus}
SCOP: d.15.4.1 PDB: 1e9m_A
Length = 106
Score = 79.2 bits (196), Expect = 7e-21
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 24 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL-E 80
G+++ +A N + I+ C +CAC+TCH + +++ KA E DM++ A+
Sbjct: 20 GLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNP 79
Query: 81 ENSRLSCQVILGSS--DLTIEIP 101
SRL+CQ+ + S L + +P
Sbjct: 80 ATSRLTCQIKVTSLLDGLVVHLP 102
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur
protein, metalloprotein, oxidoreductase; 2.20A
{Trichomonas vaginalis} SCOP: d.15.4.1
Length = 93
Score = 71.5 bits (176), Expect = 5e-18
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 22 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80
+L L + + + C+ + AC C K E+D
Sbjct: 17 EDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKH-----VSGKVAAAEDDEKEFLEDQP 71
Query: 81 ENSRLSCQVILGSS--DLTIEI 100
N+RL+C + L E+
Sbjct: 72 ANARLACAITLSGENDGAVFEL 93
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 41.6 bits (98), Expect = 9e-06
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 19 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 78
G +L DA + I I C + C TC G ++ + ED L
Sbjct: 18 ICIAQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDM-PEDNYIEDALTPEE- 74
Query: 79 LEENSRLSCQVILGSSDLTIEIP 101
++ L+CQ +SD +I
Sbjct: 75 AQQGYVLACQCRP-TSDAVFQIQ 96
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 41.0 bits (95), Expect = 2e-05
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 1 MPQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 60
M + VL P D + +L +AL I I+ C + C C V + +G
Sbjct: 1 MAEYKVLFKP----DQKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQK 56
Query: 61 EINKANEVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIP 101
+ +++++ + + + L+CQ SDL IEIP
Sbjct: 57 RVESYGKLKQEEIAQGY------VLACQTYP-ESDLIIEIP 90
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin,
oxidoreductase; NMR {Methylococcus capsulatus str} SCOP:
d.15.4.2
Length = 98
Score = 30.7 bits (70), Expect = 0.026
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 29 DALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVE-EDMLNKA---WGLEENSR 84
A L+ +IF+ +C + CATC + EG + + + +A EE
Sbjct: 29 TAALRQNIFLMSSC-REGGCATCKALCSEG--------DYDLKGCSVQALPPEEEEEGLV 79
Query: 85 LSCQVILGSSDLTIEIP 101
L C+ +DL IE+P
Sbjct: 80 LLCRTYP-KTDLEIELP 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.21
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 19 FNENSGISLCDALLKN--SIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKA 76
F + G S+ D ++ N ++ I EK IRE ++ + V+ + +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKR-------IRENYSAMIFETIVDGKLKTEK 1705
Query: 77 WGLEENSRLSCQVILGSSDLTIEIPRYTINQV 108
E N + S + ++T Q
Sbjct: 1706 IFKEINEHST-SYTFRSEKGLLSATQFT--QP 1734
Score = 29.2 bits (65), Expect = 0.26
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 7 LPHPVLCEDGAIFNE-NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKA 65
LP P E A +E + L L ++ E S V + E
Sbjct: 41 LPEPT--EGFAADDEPTTPAELVGKFLG---YVSSLVEPSKVGQFDQV-LNLCLTEFENC 94
Query: 66 ----NEV 68
N++
Sbjct: 95 YLEGNDI 101
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A
{Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Length = 116
Score = 27.0 bits (60), Expect = 0.72
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 48 CATCHVIIREGFNEINKANEV 68
C TCH II EI K +
Sbjct: 13 CKTCHSIIAPDGTEIVKGAKT 33
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter
capsulatus} SCOP: a.3.1.1
Length = 137
Score = 27.1 bits (60), Expect = 0.78
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 48 CATCHVIIREGFNEINKANEV 68
C TCH II EI K +
Sbjct: 34 CKTCHSIIAPDGTEIVKGAKT 54
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer,
axial ligand, pyrrolidone carboxylic acid; HET: HEC;
1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X*
1cot_A*
Length = 134
Score = 25.9 bits (57), Expect = 2.6
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 48 CATCHVIIREGFNEINKANEV 68
C CH++ +I K +
Sbjct: 15 CKACHMVQAPDGTDIVKGGKT 35
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 4.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 47 ACATCHVIIREGFNEI 62
ACAT + G I
Sbjct: 1105 ACATSVESVDIGVETI 1120
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A
{Equisetum arvense} SCOP: d.15.4.1
Length = 95
Score = 24.9 bits (55), Expect = 4.4
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 29 DALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 88
DA + + +C ++ AC++C + G + ++ + +++ + + + L+C
Sbjct: 25 DAAEEAGYDLPFSC-RAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFV------LTCI 77
Query: 89 VILGSSDLTIE 99
I SDL IE
Sbjct: 78 AIP-ESDLVIE 87
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 24.6 bits (54), Expect = 9.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 17 AIFNENSGISLCDALLKNSIFIEHACEK 44
I + +++ D+L K F+E E
Sbjct: 89 KICFPHLHVTIVDSLNKRITFLEKLSEA 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,646,398
Number of extensions: 84130
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 29
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)