RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8859
(109 letters)
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli
[TaxId: 562]}
Length = 109
Score = 113 bits (284), Expect = 7e-35
Identities = 63/108 (58%), Positives = 82/108 (75%)
Query: 2 PQVIVLPHPVLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNE 61
P++++LPH LC DGA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF+
Sbjct: 1 PKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDS 60
Query: 62 INKANEVEEDMLNKAWGLEENSRLSCQVILGSSDLTIEIPRYTINQVK 109
+ +++E E+DML+KAWGLE SRLSCQ + DL +EIPRYTIN +
Sbjct: 61 LPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAR 108
>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId:
9913]}
Length = 104
Score = 69.3 bits (169), Expect = 2e-17
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 22 NSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 78
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 20 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 79
Query: 79 LEENSRLSCQVILGSS--DLTIEIP 101
L + SRL CQ+ L + ++T+ +P
Sbjct: 80 LTDRSRLGCQICLTKAMDNMTVRVP 104
>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida,
putidaredoxin [TaxId: 303]}
Length = 106
Score = 65.8 bits (160), Expect = 4e-16
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 22 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWG 78
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML
Sbjct: 18 ADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAE 77
Query: 79 LEENSRLSCQVILGS--SDLTIEIP 101
L+ NSRL CQ+I+ + +++P
Sbjct: 78 LKPNSRLCCQIIMTPELDGIVVDVP 102
>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,
terpredoxin [TaxId: 306]}
Length = 105
Score = 65.4 bits (159), Expect = 6e-16
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 2 PQVIVLPHPVLCEDGA--IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREG 58
P+V+ + + G SL + +N + I C SC CATC + I +
Sbjct: 1 PRVVFIDE-----QSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDA 55
Query: 59 FNE-INKANEVEEDMLNKAW-GLEENSRLSCQVILGS--SDLTIEIP 101
+ E + +AN E D+L + +RLSCQV + L + +P
Sbjct: 56 WVEIVGEANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVP 102
>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis
[TaxId: 5722]}
Length = 93
Score = 63.5 bits (154), Expect = 3e-15
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 22 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 80
+L L + + + C+ + AC C G A + E++ L
Sbjct: 17 EDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKV--AAAEDDEKEFL---EDQP 71
Query: 81 ENSRLSCQVILGSS--DLTIEI 100
N+RL+C + L E+
Sbjct: 72 ANARLACAITLSGENDGAVFEL 93
>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus,
ferredoxin VI [TaxId: 1061]}
Length = 106
Score = 61.2 bits (148), Expect = 3e-14
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 22 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREGFNE-INKANEVEEDMLNKAWGL 79
G+++ +A N + I+ C +CAC+TCH + + + + KA E DM++ A+
Sbjct: 18 KPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEP 77
Query: 80 -EENSRLSCQVILGS--SDLTIEIP 101
SRL+CQ+ + S L + +P
Sbjct: 78 NPATSRLTCQIKVTSLLDGLVVHLP 102
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3,
Nqo3, N-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 95
Score = 49.5 bits (117), Expect = 9e-10
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 15 DGAIFNENSGISLCDALLKNSIFIEHAC-----EKSCACATCHVIIREGFNEINKANEVE 69
+ I G S+ DA+ + C AC C V I + +
Sbjct: 7 NDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLN 66
Query: 70 EDMLNKAWGLEENSRLSCQVILGSSDLTIE 99
E + + SC + + + ++
Sbjct: 67 EKGEPEIQW-QPKLAASCVTAV-ADGMVVD 94
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 46.5 bits (110), Expect = 1e-08
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 14 EDGA--IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEED 71
EDG G +L DA + I I C + C TC G ++ + N +E+
Sbjct: 10 EDGVTRFICIAQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDMPEDNYIEDA 68
Query: 72 MLNKAWGLEENSRLSCQVILGSSDLTIEIP 101
+ ++ L+CQ +SD +I
Sbjct: 69 L--TPEEAQQGYVLACQCRP-TSDAVFQIQ 95
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 46.4 bits (110), Expect = 2e-08
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 14 EDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDML 73
ED N G + +A +C ++ ACA C I+ EG + + +L
Sbjct: 35 EDYGSLEVNEGEYILEAAEAQGYDWPFSC-RAGACANCAAIVLEG-----DIDMDMQQIL 88
Query: 74 NKAWGLEENSRLSCQVILGSSDLTIEI 100
+ ++N RL+C + ++ I
Sbjct: 89 SDEEVEDKNVRLTCIGSPDADEVKIVY 115
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal
domain {Methylococcus capsulatus [TaxId: 414]}
Length = 98
Score = 44.6 bits (105), Expect = 7e-08
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 19 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 78
F S + A L+ +IF+ +C + CATC + EG ++ + + G
Sbjct: 19 FECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDYDLKGCSVQALPPEEEEEG 77
Query: 79 LEENSRLSCQVILGSSDLTIEIP 101
L L C+ +DL IE+P
Sbjct: 78 L----VLLCRTYP-KTDLEIELP 95
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 43.0 bits (101), Expect = 3e-07
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 11 VLCEDGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEE 70
L G F + S+ + L ++ + +S C +C + G E + + V
Sbjct: 18 RLSRSGTSFEIPANRSILEVLRDANVRVPS-SCESGTCGSCKTALCSG--EADHRDMVLR 74
Query: 71 DMLNKAWGLEENSRLSCQVILGSSDLTIEI 100
D + + C S++L +++
Sbjct: 75 DDE------KGTQIMVCVSRAKSAELVLDL 98
>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 97
Score = 38.4 bits (89), Expect = 1e-05
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 11 VLCEDGAI-FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVE 69
++ G + F + + DA + I + + ++ +C++C ++ G + +
Sbjct: 7 LVTPTGNVEFQCPDDVYILDAAEEEGIDLPY-SCRAGSCSSCAGKLKTG------SLNQD 59
Query: 70 EDMLNKAWGLEENSRLSCQVILGSSDLTIEIP 101
+ ++E L+C SD+TIE
Sbjct: 60 DQSFLDDDQIDEGWVLTCAAYP-VSDVTIETH 90
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 35.7 bits (82), Expect = 1e-04
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 22 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 81
+ DA + + +C ++ AC+TC + G + + + +++D +E
Sbjct: 21 PDDEYILDAAEEQGYDLPFSC-RAGACSTCAGKLVSGTVDQSDQSFLDDDQ------IEA 73
Query: 82 NSRLSCQVILGSSDLTIEIP 101
L+C +SD+ I+
Sbjct: 74 GYVLTCVAY-PTSDVVIQTH 92
>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId:
3258]}
Length = 95
Score = 35.4 bits (81), Expect = 2e-04
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 19 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 78
+ G ++ DA + + +C ++ AC++C + G + ++ + +++ + + +
Sbjct: 15 LDVPEGTTILDAAEEAGYDLPFSC-RAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGF- 72
Query: 79 LEENSRLSCQVILGSSDLTIEIP 101
L+C I SDL IE
Sbjct: 73 -----VLTCIAIP-ESDLVIETH 89
>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 35.0 bits (80), Expect = 3e-04
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 22 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 81
+ ++ D +N I + +C S +C++C + EG + + +++ + +
Sbjct: 21 DEETTILDGAEENGIELPFSC-HSGSCSSCVGKVVEGEVDQSDQIFLDD------EQMGK 73
Query: 82 NSRLSCQVILGSSDLTIEIP 101
L C S+ TI+
Sbjct: 74 GFALLCVTYP-RSNCTIKTH 92
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 124
Score = 26.8 bits (58), Expect = 0.42
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 48 CATCHVIIREGFNEINKANEVEEDMLNKAWG 78
C TCHVI+ + I N L G
Sbjct: 15 CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVG 45
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus
[TaxId: 1061]}
Length = 116
Score = 25.1 bits (54), Expect = 1.3
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 48 CATCHVIIREGFNEINKANEVE 69
C TCH II EI K +
Sbjct: 13 CKTCHSIIAPDGTEIVKGAKTG 34
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId:
1071]}
Length = 105
Score = 25.0 bits (54), Expect = 1.4
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 48 CATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLS 86
C TCH I+ NK ++ + G+E S
Sbjct: 18 CITCHTDIKGA----NKVGPSLYGVVGRHSGIEPGYNYS 52
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 25.0 bits (54), Expect = 2.7
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 26 SLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRL 85
L D + ++ H S ++ GF E E ++L KA L R
Sbjct: 136 ELADLYVNDAFGAAHRAHASTEGIAHYLPAVAGFL-----MEKELEVLGKA--LSNPDRP 188
Query: 86 SCQVILGSS 94
+I G+
Sbjct: 189 FTAIIGGAK 197
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein]
desaturase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 267
Score = 23.7 bits (51), Expect = 5.4
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 71 DMLNKAWGLEENSRLS 86
AWGL L
Sbjct: 248 SDRITAWGLAGEPSLK 263
>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate
dehydratase {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 22.9 bits (49), Expect = 7.6
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 34 NSIFIEHACEK--SCACATCHVIIREGFNE 61
++ +E A T H+ + G N
Sbjct: 44 DTELVEEFFRAVVINARLTTHIDLIRGGNT 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,359
Number of extensions: 17519
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 23
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)