BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy886
(962 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/815 (60%), Positives = 567/815 (69%), Gaps = 92/815 (11%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
V ERNAE+AIEALKEYEPEMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR+
Sbjct: 107 VWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRI 166
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
+ I STT+R+DQSILTGESVSVIKHT+ VPDPRAVNQDKKN+LFSGTN+AAGKA GIV
Sbjct: 167 LSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVAT 226
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG++T IGKIR +M+ TE+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGHFNDP HG
Sbjct: 227 TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHG 286
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
GSWI+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT
Sbjct: 287 GSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 346
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
SVICSDKTGTLTTNQMSV +MFI DK++G S EF ITGSTY P G+V N I+
Sbjct: 347 SVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 406
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRR 588
++ L EL TIC +CNDS++DFNE K +EKVGEATETAL L EK+N FN L +
Sbjct: 407 QFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV 466
Query: 589 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 648
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 467 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKM-FVKGAPEGVIDR 525
Query: 649 CTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKF 708
C + R+G+ + P+T +K +IL + +++GTGRDTLRCL LAT D P K E+M L DS++F
Sbjct: 526 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRF 585
Query: 709 ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 768
YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRIG+F E
Sbjct: 586 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 645
Query: 769 EEDT-----TGKSYS--------------------------------------------- 778
E+ TG+ +
Sbjct: 646 NEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDG 705
Query: 779 --------KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYL 830
KAEIGIAMGSGTAVAK+ASEMVLADDNFS+IVAAVEEGRAIYNNMKQFIRYL
Sbjct: 706 VNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYL 765
Query: 831 ISSNIGEVVSIFLTAALGLPEALIK----KISTTNRG-KKKKLSYNFLDIS--------- 876
ISSN+GEVV IFLTAALGLPEALI ++ G L +N D+
Sbjct: 766 ISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSP 825
Query: 877 ---LLGPAIHYQVDLTGGPDQ-----------VYLSGLPDSIYYLPTTVFATHHMSCLGG 922
L+ + ++ GG +Y P Y+ TH M C
Sbjct: 826 KEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQ-----LTHFMQCTED 880
Query: 923 GDEFKGLDCHIFHDPHPMTMALSVLVTIEMLNAMN 957
F+GLDC IF P PMTMALSVLVTIEM NA+N
Sbjct: 881 HPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALN 915
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 111/129 (86%), Gaps = 3/129 (2%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVXXXXXXANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
VLA FEE E+ T+T+FVEPFV ANAIVGVWQERNAE+AIEALKEYEPEMGKV
Sbjct: 75 VLAWFEEGEE---TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY 131
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGESVSVIKH
Sbjct: 132 RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKH 191
Query: 200 TDAVPDPRA 208
T+ VPDPRA
Sbjct: 192 TEPVPDPRA 200
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/815 (60%), Positives = 567/815 (69%), Gaps = 92/815 (11%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
V ERNAE+AIEALKEYEPEMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR+
Sbjct: 106 VWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRI 165
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
+ I STT+R+DQSILTGESVSVIKHT+ VPDPRAVNQDKKN+LFSGTN+AAGKA GIV
Sbjct: 166 LSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVAT 225
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG++T IGKIR +M+ TE+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGHFNDP HG
Sbjct: 226 TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHG 285
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
GSWI+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT
Sbjct: 286 GSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 345
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
SVICSDKTGTLTTNQMSV +MFI DK++G S EF ITGSTY P G+V N I+
Sbjct: 346 SVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 405
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRR 588
++ L EL TIC +CNDS++DFNE K +EKVGEATETAL L EK+N FN L +
Sbjct: 406 QFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV 465
Query: 589 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 648
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 466 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKM-FVKGAPEGVIDR 524
Query: 649 CTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKF 708
C + R+G+ + P+T +K +IL + +++GTGRDTLRCL LAT D P K E+M L DS++F
Sbjct: 525 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRF 584
Query: 709 ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 768
YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRIG+F E
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 644
Query: 769 EEDT-----TGKSYS--------------------------------------------- 778
E+ TG+ +
Sbjct: 645 NEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDG 704
Query: 779 --------KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYL 830
KAEIGIAMGSGTAVAK+ASEMVLADDNFS+IVAAVEEGRAIYNNMKQFIRYL
Sbjct: 705 VNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYL 764
Query: 831 ISSNIGEVVSIFLTAALGLPEALIK----KISTTNRG-KKKKLSYNFLDIS--------- 876
ISSN+GEVV IFLTAALGLPEALI ++ G L +N D+
Sbjct: 765 ISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSP 824
Query: 877 ---LLGPAIHYQVDLTGGPDQ-----------VYLSGLPDSIYYLPTTVFATHHMSCLGG 922
L+ + ++ GG +Y P Y+ TH M C
Sbjct: 825 KEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQ-----LTHFMQCTED 879
Query: 923 GDEFKGLDCHIFHDPHPMTMALSVLVTIEMLNAMN 957
F+GLDC IF P PMTMALSVLVTIEM NA+N
Sbjct: 880 HPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALN 914
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 111/129 (86%), Gaps = 3/129 (2%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVXXXXXXANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
VLA FEE E+ T+T+FVEPFV ANAIVGVWQERNAE+AIEALKEYEPEMGKV
Sbjct: 74 VLAWFEEGEE---TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY 130
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGESVSVIKH
Sbjct: 131 RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKH 190
Query: 200 TDAVPDPRA 208
T+ VPDPRA
Sbjct: 191 TEPVPDPRA 199
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/810 (60%), Positives = 566/810 (69%), Gaps = 83/810 (10%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
V ERNAE+AIEALKEYEPEMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR+
Sbjct: 106 VWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRI 165
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
+ I STT+R+DQSILTGESVSVIKHT+ VPDPRAVNQDKKN+LFSGTN+AAGKA GIV
Sbjct: 166 LTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVAT 225
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG+ T IGKIR +M+ TE+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGHFNDP HG
Sbjct: 226 TGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHG 285
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
GSWI+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT
Sbjct: 286 GSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 345
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
SVICSDKTGTLTTNQMSV +MFI D+I+G EF +TGSTY P G+V N ++
Sbjct: 346 SVICSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSG 405
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRR 588
Y+ L EL TIC +CNDS++DFNE K +EKVGEATETAL L EK+N FN L +
Sbjct: 406 QYDGLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKV 465
Query: 589 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 648
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 466 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKM--FVKGAPEGVIDR 523
Query: 649 CTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKF 708
C + R+G+ + P+T +K +IL + +++GTGRDTLRCL LAT D P K E+M L DSTKF
Sbjct: 524 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKF 583
Query: 709 ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 768
YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRIG+F E
Sbjct: 584 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 643
Query: 769 EEDT-----TGKSYS--------------------------------------------- 778
ED TG+ +
Sbjct: 644 NEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDG 703
Query: 779 --------KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYL 830
KAEIGIAMGSGTAVAK+ASEMVLADDNFS+IVAAVEEGRAIYNNMKQFIRYL
Sbjct: 704 VNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYL 763
Query: 831 ISSNIGEVVSIFLTAALGLPEALIK----KISTTNRG-KKKKLSYNFLDIS--------- 876
ISSN+GEVV IFLTAALGLPEALI ++ G L +N D+
Sbjct: 764 ISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTP 823
Query: 877 ---LLGPAIHYQVDLTGGPDQVYLSGLPDSIYYL----PTTVFA--THHMSCLGGGDEFK 927
L+ + ++ GG G + P ++ TH M C +F+
Sbjct: 824 KEPLISGWLFFRYMAIGGYVGAATVGAAAWWFLYAEDGPHVTYSQLTHFMKCSEHSPDFE 883
Query: 928 GLDCHIFHDPHPMTMALSVLVTIEMLNAMN 957
G+DC +F P PMTMALSVLVTIEM NA+N
Sbjct: 884 GVDCEVFEAPQPMTMALSVLVTIEMCNALN 913
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 111/129 (86%), Gaps = 3/129 (2%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVXXXXXXANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
VLA FEE E+ T+T+FVEPFV ANAIVGVWQERNAE+AIEALKEYEPEMGKV
Sbjct: 74 VLAWFEEGEE---TVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY 130
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGESVSVIKH
Sbjct: 131 RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKH 190
Query: 200 TDAVPDPRA 208
T+ VPDPRA
Sbjct: 191 TEPVPDPRA 199
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/815 (60%), Positives = 566/815 (69%), Gaps = 92/815 (11%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
V ERNAE+AIEALKEYEPEMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR+
Sbjct: 106 VWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRI 165
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
+ I STT+R+DQSILTGESVSVIKHT+ VPDPRAVNQDKKN+LFSGTN+AAGKA GIV
Sbjct: 166 LSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVAT 225
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG++T IGKIR +M+ TE+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGHFNDP HG
Sbjct: 226 TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHG 285
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
GSWI+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT
Sbjct: 286 GSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 345
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
SVICS KTGTLTTNQMSV +MFI DK++G S EF ITGSTY P G+V N I+
Sbjct: 346 SVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 405
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRR 588
++ L EL TIC +CNDS++DFNE K +EKVGEATETAL L EK+N FN L +
Sbjct: 406 QFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV 465
Query: 589 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVLER 648
E+A A + KKEFTLEFSRDRKSMS YC+ FVKGAPEGV++R
Sbjct: 466 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKM-FVKGAPEGVIDR 524
Query: 649 CTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKF 708
C + R+G+ + P+T +K +IL + +++GTGRDTLRCL LAT D P K E+M L DS++F
Sbjct: 525 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRF 584
Query: 709 ASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 768
YE +LTFVGVVGMLDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRIG+F E
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 644
Query: 769 EEDT-----TGKSYS--------------------------------------------- 778
E+ TG+ +
Sbjct: 645 NEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDG 704
Query: 779 --------KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYL 830
KAEIGIAMGSGTAVAK+ASEMVLADDNFS+IVAAVEEGRAIYNNMKQFIRYL
Sbjct: 705 VNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYL 764
Query: 831 ISSNIGEVVSIFLTAALGLPEALIK----KISTTNRG-KKKKLSYNFLDIS--------- 876
ISSN+GEVV IFLTAALGLPEALI ++ G L +N D+
Sbjct: 765 ISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSP 824
Query: 877 ---LLGPAIHYQVDLTGGPDQ-----------VYLSGLPDSIYYLPTTVFATHHMSCLGG 922
L+ + ++ GG +Y P Y+ TH M C
Sbjct: 825 KEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQ-----LTHFMQCTED 879
Query: 923 GDEFKGLDCHIFHDPHPMTMALSVLVTIEMLNAMN 957
F+GLDC IF P PMTMALSVLVTIEM NA+N
Sbjct: 880 HPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALN 914
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 111/129 (86%), Gaps = 3/129 (2%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVXXXXXXANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
VLA FEE E+ T+T+FVEPFV ANAIVGVWQERNAE+AIEALKEYEPEMGKV
Sbjct: 74 VLAWFEEGEE---TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY 130
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGESVSVIKH
Sbjct: 131 RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKH 190
Query: 200 TDAVPDPRA 208
T+ VPDPRA
Sbjct: 191 TEPVPDPRA 199
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 172/564 (30%), Positives = 285/564 (50%), Gaps = 71/564 (12%)
Query: 232 ERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E + +E+ K P+ VIR G+K + A+E+V GD+VEV GD+IPAD+R+I
Sbjct: 126 EAKSSKIMESFKNMVPQQALVIRNGEK---MSINAEEVVVGDLVEVKGGDRIPADLRIIS 182
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQ-DKKNILFSGTNVAAGKARGIVMGT 349
+ ++D S LTGES + PD N + +NI F TN G ARGIV+ T
Sbjct: 183 --ANGCKVDNSSLTGESEPQTRS----PDFTNENPLETRNIAFFSTNCVEGTARGIVVYT 236
Query: 350 GLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGG 409
G T +G+I T S E +TP+ +++ F ++ V + V+ + +++
Sbjct: 237 GDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSL------ILEY 290
Query: 410 SWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTS 469
+W++ ++ + + VA +PEGL A +T CL L +RMA+KN +V++L +VETLG TS
Sbjct: 291 TWLEAVIFL----IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTS 346
Query: 470 VICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGAD 529
ICSDKTGTLT N+M+V+ M+ ++I +D++ + +G +++ +L S+I G
Sbjct: 347 TICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQ---SGVSFDKTSATWLALSRIAG-- 401
Query: 530 YETLHELGTICIMCNDSAIDFNEFKQAFEK---VGEATETALIVLAEKLNPFNVSKSGLG 586
+CN + N+ K G+A+E+AL L
Sbjct: 402 ------------LCNRAVFQANQENLPILKRAVAGDASESAL----------------LK 433
Query: 587 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVL 646
E +++ ++ K + F+ K S +KGAPE +L
Sbjct: 434 CIELCCGSVKEMRERYTKIVEIPFNSTNKYQLS---IHKNPNTAEPRHLLVMKGAPERIL 490
Query: 647 ERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADST 706
+RC+ I ++ PL LK+ + + G + R LG P D +
Sbjct: 491 DRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGE--RVLGFCHLFLP----DEQFPEGF 544
Query: 707 KFASYEV-----NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR 761
+F + +V NL FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ TA+AI +
Sbjct: 545 QFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAK 604
Query: 762 RIGVFTEEEDTTGKSYSKAEIGIA 785
+G+ +E +T ++ I ++
Sbjct: 605 GVGIISEGNETVEDIAARLNIPVS 628
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 779 KAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGE 837
KA+IG+AMG +G+ V+K A++M+L DDNF+SIV VEEGR I++N+K+ I Y ++SNI E
Sbjct: 702 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 761
Query: 838 VVS--IFLTAALGLP 850
+ IF+ A + LP
Sbjct: 762 ITPFLIFIIANIPLP 776
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 116 WQERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 174
+QE + +E+ K P+ VIR G+K + A+E+V GD+VEV GD+IPAD+R+
Sbjct: 124 YQEAKSSKIMESFKNMVPQQALVIRNGEK---MSINAEEVVVGDLVEVKGGDRIPADLRI 180
Query: 175 IKIYSTTIRIDQSILTGES 193
I + ++D S LTGES
Sbjct: 181 IS--ANGCKVDNSSLTGES 197
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 177/558 (31%), Positives = 279/558 (50%), Gaps = 85/558 (15%)
Query: 232 ERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E + + I + K P+ VIR GDK ++ A ++V GD+VE+ GD++PADIR+++
Sbjct: 161 EFKSTNIIASFKNLVPQQATVIRDGDKF---QINADQLVVGDLVEMKGGDRVPADIRILQ 217
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTG 350
+ ++D S LTGES + + + + +NI F T G A+G+V+ TG
Sbjct: 218 --AQGRKVDNSSLTGESEPQTRSPECTHESPL---ETRNIAFFSTMCLEGTAQGLVVNTG 272
Query: 351 LNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGS 410
T IG+I + S E KTP+ +++ F + ++ + + + + + G +
Sbjct: 273 DRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAM------CIGYT 326
Query: 411 WIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSV 470
+++ V++ +A+ VA +PEGL A +T CL+L +R+A KN +V++L +VETLG TSV
Sbjct: 327 FLRAMVFF----MAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSV 382
Query: 471 ICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGADY 530
ICSDKTGTLT N+M+VS ++ + I +D+ T + G F S
Sbjct: 383 ICSDKTGTLTQNRMTVSHLWFDNHIHSADT----------TEDQSGQTFDQSS------- 425
Query: 531 ETLHELGTICIMCNDSAIDFNEFKQAFEK---VGEATETALIVLAEKLNPFNVSKSGLGR 587
ET L + +CN +A + K +G+A+ETAL+ +E + +G
Sbjct: 426 ETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSEL-----TLGNAMGY 480
Query: 588 REQAIAVRQ---DVETKWKKEF-TLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPE 643
RE+ V + + K++ TLE RD + + +KGAPE
Sbjct: 481 RERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHV------------------LVMKGAPE 522
Query: 644 GVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLG-----LATADNP---- 694
VLERC+ I Q+ PL + T G R LG L+ D P
Sbjct: 523 RVLERCSSILIKGQELPLDEQWREAFQ--TAYLSLGGLGERVLGFCQLYLSEKDYPPGYA 580
Query: 695 LKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKA 754
E MN S L+F G+V M+DPPR V D++ +CR AGIRVI++TGD+
Sbjct: 581 FDVEAMNFPTS--------GLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPI 632
Query: 755 TAEAICRRIGVFTEEEDT 772
TA+AI +G+ +E +T
Sbjct: 633 TAKAIAASVGIISEGSET 650
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 760 CRRIGVF---TEEEDTTGKSYSKAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEE 815
C+R+G T + + KA+IG+AMG +G+ AK+A++M+L DDNF+SIV VE+
Sbjct: 715 CQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQ 774
Query: 816 GRAIYNNMKQFIRYLISSNIGEVVS--IFLTAALGLPEALI 854
GR I++N+K+ I Y ++ NI E+ I++T ++ LP I
Sbjct: 775 GRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCI 815
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 114 GVWQERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADI 172
G +QE + + I + K P+ VIR GDK ++ A ++V GD+VE+ GD++PADI
Sbjct: 157 GYYQEFKSTNIIASFKNLVPQQATVIRDGDKF---QINADQLVVGDLVEMKGGDRVPADI 213
Query: 173 RLIKIYSTTIRIDQSILTGES 193
R+++ + ++D S LTGES
Sbjct: 214 RILQ--AQGRKVDNSSLTGES 232
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 171/564 (30%), Positives = 284/564 (50%), Gaps = 71/564 (12%)
Query: 232 ERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E + +E+ K P+ VIR G+K + A+E+V GD+VEV GD+IPAD+R+I
Sbjct: 120 EAKSSKIMESFKNMVPQQALVIRNGEK---MSINAEEVVVGDLVEVKGGDRIPADLRIIS 176
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQ-DKKNILFSGTNVAAGKARGIVMGT 349
+ ++D S LTGES + PD N + +NI F TN G ARGIV+ T
Sbjct: 177 --ANGCKVDNSSLTGESEPQTRS----PDFTNENPLETRNIAFFSTNCVEGTARGIVVYT 230
Query: 350 GLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGG 409
G T +G+I T S E +TP+ +++ F ++ V + V+ + +++
Sbjct: 231 GDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSL------ILEY 284
Query: 410 SWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTS 469
+W++ ++ + + VA +PEGL A +T CL L +RMA+KN +V++L +VETLG TS
Sbjct: 285 TWLEAVIFL----IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTS 340
Query: 470 VICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGAD 529
ICS KTGTLT N+M+V+ M+ ++I +D++ + +G +++ +L S+I G
Sbjct: 341 TICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQ---SGVSFDKTSATWLALSRIAG-- 395
Query: 530 YETLHELGTICIMCNDSAIDFNEFKQAFEK---VGEATETALIVLAEKLNPFNVSKSGLG 586
+CN + N+ K G+A+E+AL L
Sbjct: 396 ------------LCNRAVFQANQENLPILKRAVAGDASESAL----------------LK 427
Query: 587 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVL 646
E +++ ++ K + F+ K S +KGAPE +L
Sbjct: 428 CIELCCGSVKEMRERYTKIVEIPFNSTNKYQLS---IHKNPNTAEPRHLLVMKGAPERIL 484
Query: 647 ERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADST 706
+RC+ I ++ PL LK+ + + G + R LG P D +
Sbjct: 485 DRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGE--RVLGFCHLFLP----DEQFPEGF 538
Query: 707 KFASYEV-----NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICR 761
+F + +V NL FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ TA+AI +
Sbjct: 539 QFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAK 598
Query: 762 RIGVFTEEEDTTGKSYSKAEIGIA 785
+G+ +E +T ++ I ++
Sbjct: 599 GVGIISEGNETVEDIAARLNIPVS 622
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 779 KAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGE 837
KA+IG+AMG +G+ V+K A++M+L DDNF+SIV VEEGR I++N+K+ I Y ++SNI E
Sbjct: 696 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 755
Query: 838 VVS--IFLTAALGLP 850
+ IF+ A + LP
Sbjct: 756 ITPFLIFIIANIPLP 770
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 116 WQERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 174
+QE + +E+ K P+ VIR G+K + A+E+V GD+VEV GD+IPAD+R+
Sbjct: 118 YQEAKSSKIMESFKNMVPQQALVIRNGEK---MSINAEEVVVGDLVEVKGGDRIPADLRI 174
Query: 175 IKIYSTTIRIDQSILTGES 193
I + ++D S LTGES
Sbjct: 175 IS--ANGCKVDNSSLTGES 191
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 219 bits (559), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 173/550 (31%), Positives = 275/550 (50%), Gaps = 69/550 (12%)
Query: 232 ERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E + +++ K P+ VIR G+KS + A+ +V GD+VEV GD+IPAD+R+I
Sbjct: 156 EAKSSRIMDSFKNMVPQQALVIRDGEKS---TINAEFVVAGDLVEVKGGDRIPADLRIIS 212
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQ-DKKNILFSGTNVAAGKARGIVMGT 349
+ ++D S LTGES + P+ + N + +NI F TN G ARG+V+ T
Sbjct: 213 AHGC--KVDNSSLTGESEPQTRS----PEFSSENPLETRNIAFFSTNCVEGTARGVVVYT 266
Query: 350 GLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGG 409
G T +G+I T S E +TP+ +++ F ++ V + V+ + +++ G
Sbjct: 267 GDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSL------ILGY 320
Query: 410 SWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTS 469
SW++ ++ + + VA +PEGL A +T CL L +RMA+KN +V++L +VETLG TS
Sbjct: 321 SWLEAVIFL----IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTS 376
Query: 470 VICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGAD 529
ICSDKTGTLT N+M+V+ M+ ++I +D +T G F S
Sbjct: 377 TICSDKTGTLTQNRMTVAHMWFDNQIHEAD----------TTENQSGAAFDKTSA----- 421
Query: 530 YETLHELGTICIMCNDSAIDFNEFKQAFEK---VGEATETALIVLAEKLNPFNVSKSGLG 586
T L I +CN + + K G+A+E+AL+ E S G+
Sbjct: 422 --TWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCG---SVQGMR 476
Query: 587 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTXXXXXXXXXXXXXXFVKGAPEGVL 646
R I ++ ++ L + KS S +KGAPE +L
Sbjct: 477 DRNPKIV---EIPFNSTNKYQLSIHENEKSSES-------------RYLLVMKGAPERIL 520
Query: 647 ERCTHARIGSQKFPLTATLK----NRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNL 702
+RC+ + + PL +K N L+L G G L A ++
Sbjct: 521 DRCSTILLNGAEEPLKEDMKEAFQNAYLELG---GLGERVLGFCHFALPEDKYNEGYPFD 577
Query: 703 ADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR 762
AD F + +L FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ TA+AI +
Sbjct: 578 ADEPNFPT--TDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKG 635
Query: 763 IGVFTEEEDT 772
+G+ +E +T
Sbjct: 636 VGIISEGNET 645
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 6/97 (6%)
Query: 760 CRRIGVF---TEEEDTTGKSYSKAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEE 815
C+R G T + + KA+IG+AMG SG+ V+K A++M+L DDNF+SIV VEE
Sbjct: 710 CQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEE 769
Query: 816 GRAIYNNMKQFIRYLISSNIGEVVS--IFLTAALGLP 850
GR I++N+K+ I Y ++SNI E+ +F+ + LP
Sbjct: 770 GRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLP 806
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 116 WQERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 174
+QE + +++ K P+ VIR G+KS + A+ +V GD+VEV GD+IPAD+R+
Sbjct: 154 YQEAKSSRIMDSFKNMVPQQALVIRDGEKS---TINAEFVVAGDLVEVKGGDRIPADLRI 210
Query: 175 IKIYSTTIRIDQSILTGES 193
I + ++D S LTGES
Sbjct: 211 ISAHGC--KVDNSSLTGES 227
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 137/268 (51%), Gaps = 26/268 (9%)
Query: 232 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKI 291
E A S ++ LK+ V+R ++++ A E+VPGDI++V G IPAD R++
Sbjct: 162 EFQAGSIVDELKKTLALKAVVLR--DGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVT- 218
Query: 292 YSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGL 351
+++DQS LTGES++V KH K + +F+ + V G+A ++ TG
Sbjct: 219 DDAFLQVDQSALTGESLAVDKH-------------KGDQVFASSAVKRGEAFVVITATGD 265
Query: 352 NTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSW 411
NT +G+ ++ + L+ G L ++ + VW + N
Sbjct: 266 NTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRSNP------- 318
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 471
V + +A+ + +P GLPAV+TT +A+G +AKK AIV+ L ++E+L ++
Sbjct: 319 ---IVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 472 CSDKTGTLTTNQMSVSRMFIFDKIEGSD 499
CSDKTGTLT N++S+ + ++ D
Sbjct: 376 CSDKTGTLTKNKLSLHDPYTVAGVDPED 403
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 110 NAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIP 169
NA+VG QE A S ++ LK+ V+R ++++ A E+VPGDI++V G IP
Sbjct: 154 NAVVGFVQEFQAGSIVDELKKTLALKAVVLR--DGTLKEIEAPEVVPGDILQVEEGTIIP 211
Query: 170 ADIRLIKIYSTTIRIDQSILTGESVSVIKHT-DAVPDPRAEKNG 212
AD R++ +++DQS LTGES++V KH D V A K G
Sbjct: 212 ADGRIVT-DDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRG 254
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 78/236 (33%)
Query: 692 DNPLKPEDMNLADSTKFASY---------------EVNLTFVGVVGMLDPPRKEVFDSIA 736
D+P+ PE+++ A K A + E + +G++ +DPPR + + ++
Sbjct: 487 DHPI-PEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVC 545
Query: 737 RCRAAGIRVIVITGDNKATAEAICRRIGV-------------------------FTEEED 771
+ G+ + ++TGD A R++G+ F E D
Sbjct: 546 EAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAAD 605
Query: 772 -------------------------TTGK------SYSKAEIGIAMGSGTAVAKSASEMV 800
TG S KA+ GIA+ + A+SA+++V
Sbjct: 606 GFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIV 665
Query: 801 LADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALIKK 856
+I+ A++ R I++ M ++ Y I+ +SI L LGL A++ +
Sbjct: 666 FLAPGLGAIIDALKTSRQIFHRMYAYVVYRIA------LSIHLEIFLGLWIAILNR 715
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 39/247 (15%)
Query: 251 KVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 310
KV+R K Q+ A +VPGDIV + +GD IPAD RL++ +++DQS LTGES+ V
Sbjct: 133 KVLRDGKWSEQE--AAILVPGDIVSIKLGDIIPADARLLE--GDPLKVDQSALTGESLPV 188
Query: 311 IKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAIGKIRTEMSETEEIKT 370
KH Q+ +FSG+ G+ +V+ TG++T GK + T ++
Sbjct: 189 TKHP---------GQE----VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGH 235
Query: 371 PLQQKLDEFGE------QLSKVISIICVAVWAINIGHFNDPAHGGSWIKGAVYYFKIAVA 424
Q+ L G + VI II + + I + D +
Sbjct: 236 -FQKVLTAIGNFCICSIAIGMVIEIIVM--YPIQRRKYRDGIDN-------------LLV 279
Query: 425 LAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQM 484
L + IP +P V++ +A+G+ R++++ AI + + ++E + V+CSDKTGTLT N++
Sbjct: 280 LLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL 339
Query: 485 SVSRMFI 491
SV + +
Sbjct: 340 SVDKNLV 346
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 79/266 (29%)
Query: 639 KGAPEGVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPE 698
KGAPE +LE + L ++L + +Y LR L +A P K +
Sbjct: 423 KGAPEQILELAKASN----------DLSKKVLSIIDKYA--ERGLRSLAVARQVVPEKTK 470
Query: 699 DMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEA 758
+ + A +E FVG++ + DPPR + ++I R G+ V +ITGD A +
Sbjct: 471 E------SPGAPWE----FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 520
Query: 759 ICRRI-------------------------------------GVFTEEE----------- 770
RR+ GVF E +
Sbjct: 521 TGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERK 580
Query: 771 ---DTTGK------SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYN 821
TG + KA+IGIA+ T A+ AS++VL + S I++AV RAI+
Sbjct: 581 HIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQ 640
Query: 822 NMKQFIRYLISSNIGEVVSIFLTAAL 847
MK + Y +S I V L A +
Sbjct: 641 RMKNYTIYAVSITIRIVFGFMLIALI 666
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 137 KVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 196
KV+R K Q+ A +VPGDIV + +GD IPAD RL++ +++DQS LTGES+ V
Sbjct: 133 KVLRDGKWSEQE--AAILVPGDIVSIKLGDIIPADARLLE--GDPLKVDQSALTGESLPV 188
Query: 197 IKH 199
KH
Sbjct: 189 TKH 191
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/48 (95%), Positives = 48/48 (100%)
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 459
I+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL
Sbjct: 1 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/36 (88%), Positives = 34/36 (94%)
Query: 366 EEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGH 401
E+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGH
Sbjct: 1 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 36
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/32 (93%), Positives = 31/32 (96%)
Query: 815 EGRAIYNNMKQFIRYLISSNIGEVVSIFLTAA 846
EGRAIYNNMKQFIRYLISSN+GEVV IFLTAA
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 32
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 28/304 (9%)
Query: 226 GRMVQLERNAE--SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIP 283
G++++L+ + SAI AL + PE I+ D S ++V + GD++ V G+KIP
Sbjct: 201 GQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSE-EEVSLDNVAVGDLLRVRPGEKIP 259
Query: 284 ADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKAR 343
D + + S +D+S++TGE + V K A +NQ ++ +
Sbjct: 260 VDGEVQEGRSF---VDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKA---------- 306
Query: 344 GIVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFN 403
+ G +T + +I +S+ + + P+Q+ D V ++I VAV + +
Sbjct: 307 ---LHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWF--VPAVILVAVLSFIVWALL 361
Query: 404 DPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVE 463
P S Y AV++ + A P L + +G + A+ ++++ ++E
Sbjct: 362 GPQPALS------YGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALE 415
Query: 464 TLGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGS 523
+ + + DKTGTLT ++R+ D +E ++ L + + P+ + ++ +
Sbjct: 416 RMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVE-DNALALAAALEHQSEHPLANAIVHAA 474
Query: 524 KIKG 527
K KG
Sbjct: 475 KEKG 478
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 27/138 (19%)
Query: 725 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG---------------VFTEE 769
DP + ++I + +GI ++++TGD+K TAEA+ +G + +E
Sbjct: 553 DPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPEDKSRIVSEL 612
Query: 770 ED------------TTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGR 817
+D + +KA+IGIAMG+GT VA ++ + L + I A
Sbjct: 613 KDKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGDLRGIAKARRLSE 672
Query: 818 AIYNNMKQFIRYLISSNI 835
+ +N++Q + + N+
Sbjct: 673 STMSNIRQNLFFAFIYNV 690
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 123 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 182
SAI AL + PE I+ D S ++V + GD++ V G+KIP D + + S
Sbjct: 214 SAIRALLKLVPESAHRIKEDGSE-EEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-- 270
Query: 183 RIDQSILTGESVSVIKHTDA 202
+D+S++TGE + V K A
Sbjct: 271 -VDESMVTGEPIPVAKEASA 289
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 31/157 (19%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------------- 765
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKS 509
Query: 766 -------------FTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
F + + ++A++GIA+GSG+ VA + ++VL D+ +VAA
Sbjct: 510 EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAA 569
Query: 813 VEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGL 849
++ R + +KQ I + + N+ I + AA GL
Sbjct: 570 IQLSRKTMSKIKQNIFWALIYNV-----ILIPAAAGL 601
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 55/363 (15%)
Query: 231 LERNAES----AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADI 286
LE A+S AI+ L + + VIR K V +E+ GDIV V G+KIP D
Sbjct: 112 LEARAKSRTGEAIKKLVGLQAKTAVVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDG 169
Query: 287 RLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGT--NVAAGKARG 344
+++ S +D+S+++GE V V+K K + +F T N K R
Sbjct: 170 VVVEGESY---VDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRA 213
Query: 345 IVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFND 404
+G T + +I + + K P+Q+ D+ + +++ VA+ A +F
Sbjct: 214 TRVGG--ETLLAQIVKLVEDAMGSKPPIQRLADKVVAYF--IPTVLLVAISAFIYWYFI- 268
Query: 405 PAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVET 464
AH ++ F +A+ V A P T L +G + A+ ++++ ++E
Sbjct: 269 -AHAP-----LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEV 322
Query: 465 LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGS--TYEPIGDVFLNG 522
+ + DKTGTLT + V+ + + G + L + PI + +
Sbjct: 323 AEKVTAVIFDKTGTLTKGKPEVTDLV---PLNGDERELLRLAAIAERRSEHPIAEAIVKK 379
Query: 523 SKIKGADY------ETLHELGTIC--IMCNDSAI--DF-----NEFKQAFEKVGEATETA 567
+ G + E + G + I+ + + DF NE + A EK+ +TA
Sbjct: 380 ALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTA 439
Query: 568 LIV 570
+IV
Sbjct: 440 VIV 442
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 117 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 176
+ R E AI+ L + + VIR K V +E+ GDIV V G+KIP D +++
Sbjct: 117 KSRTGE-AIKKLVGLQAKTAVVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVE 173
Query: 177 IYSTTIRIDQSILTGESVSVIK 198
S +D+S+++GE V V+K
Sbjct: 174 GESY---VDESMISGEPVPVLK 192
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 31/157 (19%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------------- 765
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKS 587
Query: 766 -------------FTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
F + + ++A++GIA+GSG+ VA + ++VL D+ +VAA
Sbjct: 588 EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAA 647
Query: 813 VEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGL 849
++ R + +KQ I + + N+ I + AA GL
Sbjct: 648 IQLSRKTMSKIKQNIFWALIYNV-----ILIPAAAGL 679
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 55/363 (15%)
Query: 231 LERNAES----AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADI 286
LE A+S AI+ L + + VIR K V +E+ GDIV V G+KIP D
Sbjct: 190 LEARAKSRTGEAIKKLVGLQAKTAVVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDG 247
Query: 287 RLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGT--NVAAGKARG 344
+++ S +D+S+++GE V V+K K + +F T N K R
Sbjct: 248 VVVEGESY---VDESMISGEPVPVLKS-------------KGDEVFGATINNTGVLKIRA 291
Query: 345 IVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFND 404
+G T + +I + + K P+Q+ D+ + +++ VA+ A +F
Sbjct: 292 TRVGG--ETLLAQIVKLVEDAMGSKPPIQRLADKVVAYF--IPTVLLVAISAFIYWYFI- 346
Query: 405 PAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVET 464
AH ++ F +A+ V A P T L +G + A+ ++++ ++E
Sbjct: 347 -AHAP-----LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEV 400
Query: 465 LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGS--TYEPIGDVFLNG 522
+ + DKTGTLT + V+ + + G + L + PI + +
Sbjct: 401 AEKVTAVIFDKTGTLTKGKPEVTDLV---PLNGDERELLRLAAIAERRSEHPIAEAIVKK 457
Query: 523 SKIKGADY------ETLHELGTIC--IMCNDSAI--DF-----NEFKQAFEKVGEATETA 567
+ G + E + G + I+ + + DF NE + A EK+ +TA
Sbjct: 458 ALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTA 517
Query: 568 LIV 570
+IV
Sbjct: 518 VIV 520
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 124 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIR 183
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 201 AIKKLVGLQAKTAVVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY--- 255
Query: 184 IDQSILTGESVSVIK 198
+D+S+++GE V V+K
Sbjct: 256 VDESMISGEPVPVLK 270
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 26/132 (19%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG-------VFTEEED 771
GV+ + D R E ++I++ +A GI+ +++TGDN+ A+ + +G V E+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKA 196
Query: 772 TTGK-------------------SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
K + ++A++GIA+G+GT VA +++VL ++ + A
Sbjct: 197 EKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAI 256
Query: 813 VEEGRAIYNNMK 824
VE R Y+ ++
Sbjct: 257 VELSRKTYSKLE 268
>pdb|2VOY|E Chain E, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 30
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/30 (73%), Positives = 24/30 (80%)
Query: 95 TSFVEPFVXXXXXXANAIVGVWQERNAESA 124
T+FVEPFV ANAIVGVWQERNAE+A
Sbjct: 1 TAFVEPFVILLILIANAIVGVWQERNAENA 30
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 26/131 (19%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG-------VFTEEED 771
GV+ + D R E ++I++ +A GI+ +++TGDN+ A+ + +G V E+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKA 196
Query: 772 TTGK-------------------SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
K + ++A++GIA+G+GT VA +++VL ++ + A
Sbjct: 197 EKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIGAGTDVAVETADIVLVRNDPRDVAAI 256
Query: 813 VEEGRAIYNNM 823
VE R Y+
Sbjct: 257 VELSRKTYSKF 267
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 26/132 (19%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------------- 765
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKS 215
Query: 766 -------------FTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
F + + ++A++GIA+GSG+ VA + ++VL D+ +VAA
Sbjct: 216 EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAA 275
Query: 813 VEEGRAIYNNMK 824
++ R + +K
Sbjct: 276 IQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 26/132 (19%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------------- 765
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKS 215
Query: 766 -------------FTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
F + + ++A++GIA+GSG+ VA + ++VL D+ +VAA
Sbjct: 216 EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAA 275
Query: 813 VEEGRAIYNNMK 824
++ R + +K
Sbjct: 276 IQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------------- 765
G++ + D ++ ++ + GI+V ITGDN +AEAI R + +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKS 195
Query: 766 -------------FTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAA 812
F + + ++A++GIA+GSG+ VA + ++VL D+ +VAA
Sbjct: 196 EEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAA 255
Query: 813 VEEGR 817
++ R
Sbjct: 256 IQLSR 260
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 638 VKGAPEGVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKP 697
+KGAPE +L+RC+ + ++ PL LK+ + + G + R LG P
Sbjct: 125 MKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGE--RVLGFCHLLLP--- 179
Query: 698 EDMNLADSTKFASYEV-----NLTFVGVVGMLDPP 727
D + +F + EV NL FVG++ M+DPP
Sbjct: 180 -DEQFPEGFQFDTDEVNFPVDNLCFVGLISMIDPP 213
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 261 QKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDP 320
++V + + GDI++V G K P D R+I+ +S +D+S++TGE++ V K +
Sbjct: 35 EQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHS---MVDESLITGEAMPVAKKPGSTVIA 91
Query: 321 RAVNQDKKNILFSGTNVAA 339
++NQ+ ++L T+V A
Sbjct: 92 GSINQN-GSLLICATHVGA 109
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 147 QKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIK 198
++V + + GDI++V G K P D R+I+ +S +D+S++TGE++ V K
Sbjct: 35 EQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHS---MVDESLITGEAMPVAK 83
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 34/119 (28%)
Query: 722 GMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV---------------- 765
G L ++ ++ + GI+V ITGDN +AEAI R + +
Sbjct: 18 GTLTKLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEV 77
Query: 766 ----------FTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVE 814
F + + ++A++GIA+GSG ++VL D+ +VAA++
Sbjct: 78 KKLQAKEVVAFVGDGINDAPALAQADLGIAVGSG--------DIVLIRDDLRDVVAAIQ 128
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 638 VKGAPEGVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKP 697
+KGAPE +L+RC+ + ++ PL +++ + + G + R LG + P
Sbjct: 122 MKGAPERILDRCSSILVQGKEIPLDKEMQDAFQNAYLELGGLGE--RVLGFCQLNLP--- 176
Query: 698 EDMNLADSTKFASYEVN-----LTFVGVVGMLD 725
KF + E+N L FVG++ M+D
Sbjct: 177 -SGKFPRGFKFDTDELNFPTEKLCFVGLMSMID 208
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 500 SSFLEFEITGS---TYEPIGDVFLNGSKIKGADYETLHELGTICIMCNDSAIDFNEFKQA 556
++F +F+ GS T E +G +F + D ET H++ C ND +DF EF +
Sbjct: 401 AAFQQFDSDGSGKITNEELGRLF----GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEM 456
Query: 557 FEKV 560
+K+
Sbjct: 457 MQKI 460
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 500 SSFLEFEITGS---TYEPIGDVFLNGSKIKGADYETLHELGTICIMCNDSAIDFNEFKQA 556
++F +F+ GS T E +G +F + D ET H++ C ND +DF EF +
Sbjct: 127 AAFQQFDSDGSGKITNEELGRLF----GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
Query: 557 FEKV 560
+K+
Sbjct: 183 MQKI 186
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/124 (14%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 725 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV--------------FTEEE 770
D PR + D + + + G+++I+++GD + + + + + + E+
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKL 194
Query: 771 DTTGKSY-------------SKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGR 817
G + A++ +AMG+G ++K+ ++++L ++ +++ ++ +
Sbjct: 195 KQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDIGTLLGLIKNRK 254
Query: 818 AIYN 821
+ N
Sbjct: 255 RLSN 258
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/124 (14%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 725 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV--------------FTEEE 770
D PR + D + + + G+++I+++GD + + + + + + E+
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKL 194
Query: 771 DTTGKSY-------------SKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGR 817
G + A++ +AMG+G ++K+ ++++L ++ +++ ++ +
Sbjct: 195 KQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDIGTLLGLIKNRK 254
Query: 818 AIYN 821
+ N
Sbjct: 255 RLSN 258
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/124 (14%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 725 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV--------------FTEEE 770
D PR + D + + + G+++I+++GD + + + + + + E+
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKL 194
Query: 771 DTTGKSY-------------SKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGR 817
G + A++ +AMG+G ++K+ ++++L ++ +++ ++ +
Sbjct: 195 KQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSNDIGTLLGLIKNRK 254
Query: 818 AIYN 821
+ N
Sbjct: 255 RLSN 258
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 124 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIR 183
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 2 AIKKLVGLQAKTAVVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES---Y 56
Query: 184 IDQSILTGESVSVIKH 199
+D+S+++GE V V+K
Sbjct: 57 VDESMISGEPVPVLKS 72
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 238 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIR 297
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 2 AIKKLVGLQAKTAVVIRDGKE--IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES---Y 56
Query: 298 IDQSILTGESVSVIKH 313
+D+S+++GE V V+K
Sbjct: 57 VDESMISGEPVPVLKS 72
>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
Length = 637
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 351 LNTAIGKIRTEMSETEEIKT-PLQQKL----DEFGEQLSKVISIICVAVWAINIGHFNDP 405
L +I + E I T P Q L D+F ++++ I+ +NIG NDP
Sbjct: 340 LRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAE--EVNIGRVNDP 397
Query: 406 AHGGSWIKGAVYYFKIAV-----------ALAVAAIPEGLPAVITTCLALGTRRMAKKNA 454
A G +++ A ++ A + E + V+ C A +R+A +
Sbjct: 398 AGGSYYVESLTRSLADAAWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQ 457
Query: 455 IVRSLPSVETLGCTSV 470
+ ++ +G S+
Sbjct: 458 PITAVSEFPMIGARSI 473
>pdb|2CAI|A Chain A, Structure Of Glutathione-S-Transferase Mutant, R21l, From
Schistosoma Haematobium
pdb|2CAI|B Chain B, Structure Of Glutathione-S-Transferase Mutant, R21l, From
Schistosoma Haematobium
pdb|2CAQ|A Chain A, Structure Of R21l Mutant Of Sh28gst In Complex With Gsh
Length = 211
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 220 RNEHKCGRMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPG------DI 273
+ H G + N E I ++ E E K + + QK+ KEI+ G DI
Sbjct: 80 KKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKI-IKEILNGKVPVLLDI 138
Query: 274 V---------EVSVGDKIP-ADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 315
+ +++VGDK+ AD+ LI + +D+ LTG+ + KH +
Sbjct: 139 ICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRE 190
>pdb|2F8F|A Chain A, Crystal Structure Of The Y10f Mutant Of The Gluathione
S-Transferase From Schistosoma Haematobium
pdb|2F8F|B Chain B, Crystal Structure Of The Y10f Mutant Of The Gluathione
S-Transferase From Schistosoma Haematobium
Length = 211
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 220 RNEHKCGRMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPG------DI 273
+ H G + N E I ++ E E K + + QK+ KEI+ G DI
Sbjct: 80 KKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKI-IKEILNGKVPVLLDI 138
Query: 274 V---------EVSVGDKIP-ADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 315
+ +++VGDK+ AD+ LI + +D+ LTG+ + KH +
Sbjct: 139 ICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRE 190
>pdb|2C8U|A Chain A, Structure Of R21q Mutant Of Sh28gst
pdb|2C8U|B Chain B, Structure Of R21q Mutant Of Sh28gst
Length = 211
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 220 RNEHKCGRMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPG------DI 273
+ H G + N E I ++ E E K + + QK+ KEI+ G DI
Sbjct: 80 KKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKI-IKEILNGKVPVLLDI 138
Query: 274 V---------EVSVGDKIP-ADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 315
+ +++VGDK+ AD+ LI + +D+ LTG+ + KH +
Sbjct: 139 ICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRE 190
>pdb|1OE7|A Chain A, 28kda Glutathione S-Transferase From Schistosoma
Haematobium
pdb|1OE7|B Chain B, 28kda Glutathione S-Transferase From Schistosoma
Haematobium
pdb|1OE8|A Chain A, 28kda Glutathione S-transferase From Schistosoma
Haematobium (glutathione Saturated)
pdb|1OE8|B Chain B, 28kda Glutathione S-transferase From Schistosoma
Haematobium (glutathione Saturated)
pdb|2C80|A Chain A, Stucture Of Sh28gst In Complex With S-Hexyl Glutathione
pdb|2C80|B Chain B, Stucture Of Sh28gst In Complex With S-Hexyl Glutathione
pdb|2CA8|A Chain A, Structure Of Sh28gst In Complex With Gsh At Ph 6.0
Length = 211
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 220 RNEHKCGRMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPG------DI 273
+ H G + N E I ++ E E K + + QK+ KEI+ G DI
Sbjct: 80 KKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKI-IKEILNGKVPVLLDI 138
Query: 274 V---------EVSVGDKIP-ADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 315
+ +++VGDK+ AD+ LI + +D+ LTG+ + KH +
Sbjct: 139 ICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRE 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,973,934
Number of Sequences: 62578
Number of extensions: 1110241
Number of successful extensions: 2897
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2767
Number of HSP's gapped (non-prelim): 98
length of query: 962
length of database: 14,973,337
effective HSP length: 108
effective length of query: 854
effective length of database: 8,214,913
effective search space: 7015535702
effective search space used: 7015535702
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)