RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy886
(962 letters)
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 959 bits (2480), Expect = 0.0
Identities = 439/804 (54%), Positives = 523/804 (65%), Gaps = 96/804 (11%)
Query: 232 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKI 291
ERNAE AIEALKEYE E KV+R + V K AK++VPGDIVE++VGDK+PADIR++ +
Sbjct: 57 ERNAEKAIEALKEYESEHAKVLRDGRWSVIK--AKDLVPGDIVELAVGDKVPADIRVLSL 114
Query: 292 YSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGL 351
T+R+DQSILTGESVSV KHT++VPD RAVNQDKKN+LFSGT V AGKARG+V+ TG+
Sbjct: 115 K--TLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGM 172
Query: 352 NTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSW 411
+T IGKIR EM E+ TPLQ+KLDEFGE LSKVI +IC+ VW INIGHFNDPA GG W
Sbjct: 173 STEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGW 232
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 471
I+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MAKKNAIVR LPSVETLGCT+VI
Sbjct: 233 IQGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVI 292
Query: 472 CSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGADYE 531
CSDKTGTLTTNQMSV ++ ++ S SS EF +TG+TY P G V + + G
Sbjct: 293 CSDKTGTLTTNQMSVCKVVA---LDPSSSSLNEFCVTGTTYAPEGGVIKDDGPVAGGQDA 349
Query: 532 TLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQA 591
L EL TI +CNDS++DFNE K +EKVGEATE AL VL EK+ +R A
Sbjct: 350 GLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPA 409
Query: 592 IAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTH 651
+ K+KK TLEFSRDRKSMS C P S+G KLFVKGAPEGVLERCTH
Sbjct: 410 LGCNSVWNDKFKKLATLEFSRDRKSMSVLCKP-------STGNKLFVKGAPEGVLERCTH 462
Query: 652 ARIG-SQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFAS 710
G + PLT +KN IL + ++ GT LRCL LA D P E+ L+D F +
Sbjct: 463 ILNGDGRAVPLTDKMKNTILSVIKEMGT-TKALRCLALAFKDIPDPREEDLLSDPANFEA 521
Query: 711 YEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 770
E +LTF+GVVGMLDPPR EV D+I +CR AGIRVI+ITGDNK TAEAICRRIG+F+ +E
Sbjct: 522 IESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDE 581
Query: 771 DT-----TGKSYS----------------------------------------------- 778
D TG+ +
Sbjct: 582 DVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVN 641
Query: 779 ------KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLIS 832
KA+IGIAMGSGT VAK AS+MVLADDNF++IVAAVEEGRAIYNNMKQFIRY+IS
Sbjct: 642 DAPALKKADIGIAMGSGTEVAKEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMIS 701
Query: 833 SNIGEVVSIFLTAALGLPEALIKKI-----STTNRGKKKKLSYNFLDISLL--GPAIHYQ 885
SNIGEVV IFLTAALG+PE LI T+ L +N D ++ P +
Sbjct: 702 SNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDE 761
Query: 886 VDLTGGPDQVYLSGLPDSIYYLPTTVFA-------THHMSCLG----GGDEFKGLDCHIF 934
+TG ++ L +Y TV TH C +F+ DC++F
Sbjct: 762 PLITG---WLFFRYLVVGVYVGLATVGGFVWWYLLTHFTGCDEDSFTTCPDFEDPDCYVF 818
Query: 935 HDPHPM-TMALSVLVTIEMLNAMN 957
P T++LSVLV IEM NA+N
Sbjct: 819 EGKQPARTISLSVLVVIEMFNALN 842
Score = 196 bits (500), Expect = 9e-52
Identities = 89/129 (68%), Positives = 106/129 (82%), Gaps = 7/129 (5%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
VLA FEE E T+T+FVEPFVILLIL+ANAIVGVWQERNAE AIEALKEYE E KV+
Sbjct: 22 VLAWFEEGE---ETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL 78
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R + V K AK++VPGDIVE++VGDK+PADIR++ + T+R+DQSILTGESVSV KH
Sbjct: 79 RDGRWSVIK--AKDLVPGDIVELAVGDKVPADIRVLSLK--TLRVDQSILTGESVSVNKH 134
Query: 200 TDAVPDPRA 208
T++VPD RA
Sbjct: 135 TESVPDERA 143
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 450 bits (1159), Expect = e-143
Identities = 229/682 (33%), Positives = 332/682 (48%), Gaps = 131/682 (19%)
Query: 227 RMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADI 286
VQ E AE A+EALK+ KV+R K ++ A E+VPGDIV + GD +PAD+
Sbjct: 120 GFVQ-EYRAEKALEALKKMSSPKAKVLRDGK--FVEIPASELVPGDIVLLEAGDVVPADL 176
Query: 287 RLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRA-VNQDKKNILFSGTNVAAGKARGI 345
RL++ S+ + +D+S LTGES+ V K + A + D+ N+LFSGT V +G+A+GI
Sbjct: 177 RLLE--SSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGI 234
Query: 346 VMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDP 405
V+ TG T GKI + +E+KTPLQ+KL++ G+ L + ++ V+ + +
Sbjct: 235 VVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLGKFLLVLALVLGALVFVVGLFRG--- 291
Query: 406 AHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETL 465
G ++ + A+ALAVAA+PEGLPAV+T LALG +RMAK NAIVRSL ++ETL
Sbjct: 292 --GNGLLESFLT----ALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETL 345
Query: 466 GCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKI 525
G VICSDKTGTLT N+M+V +++I + D L
Sbjct: 346 GSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDL---------------------- 383
Query: 526 KGADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGL 585
D L +CN + N + QA G+ TE AL+ AEKL F++ SGL
Sbjct: 384 --KDSPALLRFLLAAALCNSVTPEKNGWYQA----GDPTEGALVEFAEKLG-FSLDLSGL 436
Query: 586 GRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGV 645
+A + F +RK MS K LFVKGAPE +
Sbjct: 437 EVEYPILA-------------EIPFDSERKRMSVIV------KTDEGKYILFVKGAPEVI 477
Query: 646 LERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADS 705
LERC + PLT + + ++ + LR L +A +D
Sbjct: 478 LERCKSIG---ELEPLTEEGLRTLEEAVKEL--ASEGLRVLAVAYKKLDRAEKDD----- 527
Query: 706 TKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
+ E +L F+G+ G+ DPPR++V ++I R AGI+V +ITGD+ TA AI + G+
Sbjct: 528 -EVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGI 586
Query: 766 FTEEEDT---TGKSYSKA----------EIGI-----------------------AM-GS 788
E E G E+ + AM G
Sbjct: 587 EAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTGD 646
Query: 789 GT-------------AVAKSASE-------MVLADDNFSSIVAAVEEGRAIYNNMKQFIR 828
G A+ ++ +VL DDNF++IV AV EGR +Y N+K+FI
Sbjct: 647 GVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFIL 706
Query: 829 YLISSNIGEVVSIFLTAALGLP 850
YL+S N+GEV+++ + + L
Sbjct: 707 YLLSKNVGEVLTLLIYSLFNLF 728
Score = 109 bits (275), Expect = 2e-24
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 97 FVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVP 156
V+ VILL+++ NA++G QE AE A+EALK+ KV+R K ++ A E+VP
Sbjct: 103 GVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGK--FVEIPASELVP 160
Query: 157 GDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPD 205
GDIV + GD +PAD+RL++ S+ + +D+S LTGES+ V K +
Sbjct: 161 GDIVLLEAGDVVPADLRLLE--SSDLEVDESALTGESLPVEKQALPLTK 207
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 376 bits (968), Expect = e-120
Identities = 169/651 (25%), Positives = 269/651 (41%), Gaps = 159/651 (24%)
Query: 228 MVQLERNAESAIEALKEYE--PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPAD 285
+V+ + AE + +L + V+R G +++ AK++VPGD+V V G+ +PAD
Sbjct: 13 VVKQKLKAEDILRSLSDRLVNTRPATVLRN---GWKEIPAKDLVPGDVVLVKSGETVPAD 69
Query: 286 IRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGI 345
L S + +D+S LTGES V+K +++F+GT V G +
Sbjct: 70 GVL---LSGSCFVDESNLTGESNPVLKTALKETQS---GTITGDLVFAGTYVFGGTLIVV 123
Query: 346 VMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQ-LSKVISIICVAVWAINIGHFND 404
V TG+ T +G+I + E +TPLQ K D + ++ +AV+ D
Sbjct: 124 VTPTGILTTVGRIAVVVKTGFETRTPLQSKRDRLENFIFILFLLLLALAVFLYLFIRGWD 183
Query: 405 PAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVET 464
P A+ + V +P LPA +T LA+G R+AKK +VR+L ++E
Sbjct: 184 PNSIFKA-------LLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNALEE 236
Query: 465 LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSK 524
LG +CSDKTGTLT N+M++ ++I
Sbjct: 237 LGKVDYLCSDKTGTLTKNKMTLQGVYI--------------------------------- 263
Query: 525 IKGADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSG 584
+ G+ E AL+ AE + +
Sbjct: 264 ----------------DGGKEDNSSSLVACDNNYLSGDPMEKALLKSAELVGKADKGNK- 306
Query: 585 LGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEG 644
++K FS K MS + LFVKGAPE
Sbjct: 307 ----------------EYKILDVFPFSSVLKRMSVIV------ETPDGSDLLFVKGAPEF 344
Query: 645 VLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLAD 704
+LERC + + + L+L R LR L A+ +
Sbjct: 345 ILERCNN-------------YEEKYLELA------RQGLRVLAFASKELED--------- 376
Query: 705 STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 764
+L F+G++ DP R + ++I +AAGI+V++ITGDN TA+AI + +G
Sbjct: 377 ---------DLEFLGLITFEDPLRPDAKETIEELKAAGIKVVMITGDNVLTAKAIAKELG 427
Query: 765 ------VFTEEEDTTGKSY--------------------SKAEIGIAMGSGTAVAKSASE 798
V E++ ++ KA++GIAMG AK+A++
Sbjct: 428 IDVFARVSPEQKLQIVEALQKKGHIVAMTGDGVNDAPALKKADVGIAMG-----AKAAAD 482
Query: 799 MVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGL 849
+VL DD+ S+IV AV+EGR I++N+K I + I+ N+ + L + L
Sbjct: 483 IVLLDDDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLALLLIVIIL 533
Score = 99.7 bits (249), Expect = 1e-21
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYE--PEMGKVIRGDKSGVQKVRAKEIVPGDI 159
IL +++ ++ V Q+ AE + +L + V+R G +++ AK++VPGD+
Sbjct: 1 FILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRN---GWKEIPAKDLVPGDV 57
Query: 160 VEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKN 211
V V G+ +PAD L S + +D+S LTGES V+K
Sbjct: 58 VLVKSGETVPADGVL---LSGSCFVDESNLTGESNPVLKTALKETQSGTITG 106
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 359 bits (922), Expect = e-109
Identities = 218/690 (31%), Positives = 336/690 (48%), Gaps = 143/690 (20%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
VQ E +E ++EAL + P +IR K + V A +VPGD+V +SVGD++PAD+R+
Sbjct: 99 VQ-EYRSEKSLEALNKLVPPECHLIREGKL--EHVLASTLVPGDLVCLSVGDRVPADLRI 155
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVN-QDKKNILFSGTNVAAGKARGIVM 347
++ + + ID+S LTGE+ V K T +P + ++ NI F GT V G +GIV+
Sbjct: 156 VE--AVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVV 213
Query: 348 GTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLS----KVISIICVAVWAINIGHFN 403
GTG NT G + M E+ KTPLQ+ +D G+QLS VI +IC+ +G F
Sbjct: 214 GTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSFGVIGVICL------VGWF- 266
Query: 404 DPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVE 463
G W++ F I+V+LAVAAIPEGLP ++T LALG RM+KK AIVR LPSVE
Sbjct: 267 ---QGKDWLE----MFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVE 319
Query: 464 TLGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGS 523
TLG +VICSDKTGTLT N M+V++++ D L + + G+V ++G
Sbjct: 320 TLGSVNVICSDKTGTLTKNHMTVTKIWTSDG--------LHTMLNAVSLNQFGEVIVDGD 371
Query: 524 KIKGADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKS 583
+ G + + +CN++ +A +G T+ ALI L K
Sbjct: 372 VLHGFYTVAVSRILEAGNLCNNAKFR----NEADTLLGNPTDVALIELLMKF-------- 419
Query: 584 GLGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPE 643
GL D+ + + + FS +RK M+ C + F+KGA E
Sbjct: 420 GL----------DDLRETYIRVAEVPFSSERKWMAVKCVHRQDRS-----EMCFMKGAYE 464
Query: 644 GVLERCT-HARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNL 702
VL+ CT + + + LT ++ I + + + LR + A+ P K +
Sbjct: 465 QVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMAS--AGLRVIAFASG--PEKGQ---- 516
Query: 703 ADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRR 762
LTF+G+VG+ DPPR V +++ G+R+I+ITGD++ TA +I RR
Sbjct: 517 ------------LTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARR 564
Query: 763 IGVFTEEEDTTGKSYSKAEIG--------------------------------------I 784
+G+ + T +S S ++ +
Sbjct: 565 LGMPS----KTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVV 620
Query: 785 AM---GSGTAVAKSASE------------------MVLADDNFSSIVAAVEEGRAIYNNM 823
AM G A A ++ M+L DD+F++I++A+EEG+ I+NN+
Sbjct: 621 AMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNI 680
Query: 824 KQFIRYLISSNIGEVVSIFLTAALGLPEAL 853
K FI + +S+++ + I L +G P L
Sbjct: 681 KNFITFQLSTSVAALSLIALATLMGFPNPL 710
Score = 77.6 bits (191), Expect = 2e-14
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 26/149 (17%)
Query: 78 PQVLALFEEHEDFNSTLTSFVEPFVILLILIANAI----------------------VGV 115
+ E+ + L+ FV+ +ILL++ + I VG
Sbjct: 39 WNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNIDDAVSITLAILIVVTVGF 98
Query: 116 WQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLI 175
QE +E ++EAL + P +IR K + V A +VPGD+V +SVGD++PAD+R++
Sbjct: 99 VQEYRSEKSLEALNKLVPPECHLIREGKL--EHVLASTLVPGDLVCLSVGDRVPADLRIV 156
Query: 176 KIYSTTIRIDQSILTGESVSVIKHTDAVP 204
+ + + ID+S LTGE+ V K T +P
Sbjct: 157 E--AVDLSIDESNLTGETTPVSKVTAPIP 183
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 276 bits (707), Expect = 7e-79
Identities = 180/667 (26%), Positives = 279/667 (41%), Gaps = 148/667 (22%)
Query: 251 KVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 310
VIRG + Q++ +IV GDIV +S GD +PAD I S + ID+S +TGES
Sbjct: 170 AVIRGGQ--EQQISIHDIVVGDIVSLSTGDVVPADGVFISGLS--LEIDESSITGES--- 222
Query: 311 IKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAIGKIRTEMSETEEIKT 370
DP + L SGT V G R +V G+N+ GK+ E+ + E T
Sbjct: 223 --------DPIKKGPVQDPFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRQAGEDST 274
Query: 371 PLQQKLDEFGEQLSK----------VISIICVAVWAINIGHFNDPAHGGSWIKGAVYYFK 420
PLQ+KL E + K ++ + I + +++ +F
Sbjct: 275 PLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLD----HFI 330
Query: 421 IAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLT 480
IAV + V A+PEGLP +T LA ++M K N +VR L + ET+G + ICSDKTGTLT
Sbjct: 331 IAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLT 390
Query: 481 TNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGADYETLHELGTIC 540
N MSV + + IG+ N + + + +
Sbjct: 391 QNVMSVVQGY------------------------IGEQRFNVRDVLRNVPKHVRNILVEG 426
Query: 541 IMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVET 600
I N S+ + + +G TE AL+ G + +D +
Sbjct: 427 ISLNSSSEEVVDRGGKRAFIGSKTECALL--------------DFGLL-----LLRDYQE 467
Query: 601 KWKKEFTLE---FSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHAR-IGS 656
+E ++ F+ +RK MS + G + F KGA E VL+ C
Sbjct: 468 VRAEEKVVKIYPFNSERKFMSV----VVKHSGGKY--REFRKGASEIVLKPCRKRLDSNG 521
Query: 657 QKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFASY-EVNL 715
+ P++ K+R D+ + D LR + LA D + Y L
Sbjct: 522 EATPISDDDKDRCADVIEPLAS--DALRTICLAYRDFAPEEFP--------RKDYPNKGL 571
Query: 716 TFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEE----ED 771
T +GVVG+ DP R V +++ C+ AGI V ++TGDN TA+AI R G+ T E
Sbjct: 572 TLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEG 631
Query: 772 TTGKSYSKAEI----------------------GIAMGSGTAVA---------------- 793
+S E+ + G VA
Sbjct: 632 KEFRSLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGTNDAPALKLAD 691
Query: 794 -------------KSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVS 840
K AS+++L DDNF+SIV AV+ GR +Y+N+++F+++ ++ N+ V+
Sbjct: 692 VGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVIL 751
Query: 841 IFLTAAL 847
F+ + +
Sbjct: 752 TFVGSCI 758
Score = 52.5 bits (126), Expect = 1e-06
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVILLILIANAIVGVWQERNAESAIEAL-KEYEPEMGKV 138
VL L E E T T ++E IL+ +I +V + E L +E + V
Sbjct: 112 VLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAV 171
Query: 139 IRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 193
IRG + Q++ +IV GDIV +S GD +PAD I S + ID+S +TGES
Sbjct: 172 IRGGQ--EQQISIHDIVVGDIVSLSTGDVVPADGVFISGLS--LEIDESSITGES 222
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 255 bits (654), Expect = 2e-71
Identities = 182/572 (31%), Positives = 282/572 (49%), Gaps = 113/572 (19%)
Query: 232 ERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E + +E+ K P+ VIR G+K + A+++V GD+VEV GD+IPAD+R+I
Sbjct: 125 EAKSSKIMESFKNMVPQQALVIRDGEK---MSINAEQVVVGDLVEVKGGDRIPADLRIIS 181
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVN------QDKKNILFSGTNVAAGKARG 344
+ ++D S LTGES P R+ + +NI F TN G ARG
Sbjct: 182 --AQGCKVDNSSLTGESE---------PQTRSPEFTHENPLETRNIAFFSTNCVEGTARG 230
Query: 345 IVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFND 404
IV+ TG T +G+I + S E KTP+ +++ F ++ V + V+ + +++
Sbjct: 231 IVVNTGDRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSL----- 285
Query: 405 PAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVET 464
G +W++ ++ + + VA +PEGL A +T CL L +RMA+KN +V++L +VET
Sbjct: 286 -ILGYTWLEAVIFL----IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVET 340
Query: 465 LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSK 524
LG TS ICSDKTGTLT N+M+V+ M+ ++I +D +T + G F S
Sbjct: 341 LGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEAD----------TTEDQSGVSFDKSS- 389
Query: 525 IKGADYETLHELGTICIMCNDSAIDFNEFKQAFEKV--------GEATETALIVLAEKLN 576
T L I +CN + FK E V G+A+E+AL+ E L
Sbjct: 390 ------ATWLALSRIAGLCNRA-----VFKAGQENVPILKRAVAGDASESALLKCIE-LC 437
Query: 577 PFNVSKSGLGRREQAIAVRQDVETKWKKEFTLEF-SRDRKSMSSYCTPLKSSKLGSSGPK 635
+V ++ + K + F S ++ +S + P+
Sbjct: 438 LGSV---------------MEMRERNPKVVEIPFNSTNKYQLSIHENE------DPRDPR 476
Query: 636 --LFVKGAPEGVLERCTHARIGSQKFPLTATLK----NRILDLTRQYGTGRDTLRCLG-- 687
L +KGAPE +LERC+ I ++ PL LK N L+L G G R LG
Sbjct: 477 HLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELG---GLGE---RVLGFC 530
Query: 688 ---LATADNP----LKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRA 740
L P +D+N NL FVG++ M+DPPR V D++ +CR+
Sbjct: 531 HLYLPDEQFPEGFQFDTDDVNFPTD--------NLCFVGLISMIDPPRAAVPDAVGKCRS 582
Query: 741 AGIRVIVITGDNKATAEAICRRIGVFTEEEDT 772
AGI+VI++TGD+ TA+AI + +G+ +E +T
Sbjct: 583 AGIKVIMVTGDHPITAKAIAKGVGIISEGNET 614
Score = 87.5 bits (217), Expect = 2e-17
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 779 KAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGE 837
KA+IG+AMG +G+ V+K A++M+L DDNF+SIV VEEGR I++N+K+ I Y ++SNI E
Sbjct: 701 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 760
Query: 838 VVS--IFLTAALGLP 850
+ IF+ A + LP
Sbjct: 761 ITPFLIFIIANIPLP 775
Score = 66.7 bits (163), Expect = 4e-11
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIV 160
V+ ++I +QE + +E+ K P+ VIR G+K + A+++V GD+V
Sbjct: 109 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEK---MSINAEQVVVGDLV 165
Query: 161 EVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 193
EV GD+IPAD+R+I + ++D S LTGES
Sbjct: 166 EVKGGDRIPADLRIIS--AQGCKVDNSSLTGES 196
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 216 bits (550), Expect = 8e-58
Identities = 164/613 (26%), Positives = 271/613 (44%), Gaps = 108/613 (17%)
Query: 232 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKI 291
E AE +++LK M VIR KS + + ++VPGDI + GD IPAD+RLI+
Sbjct: 102 EYKAEKTMDSLKNLASPMAHVIRNGKS--DAIDSHDLVPGDICLLKTGDTIPADLRLIE- 158
Query: 292 YSTTIRIDQSILTGESVSVIKHTDAV--PDPRAVNQDKKNILFSGTNVAAGKARGIVMGT 349
+ D+++LTGES+ VIK A + D+ N+ FS + V G+A+GI + T
Sbjct: 159 -TKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIAT 217
Query: 350 GLNTAIGKI------------RTEMSETE-----------------------EIKTPLQQ 374
LN+ IG I R E + + TPL +
Sbjct: 218 ALNSEIGAIAAGLQGDGGLFQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHR 277
Query: 375 KLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSWIKGAVYYFKIAVALAVAAIPEGL 434
KL + L + I + V A + + + A+Y A+ LA++ IPE L
Sbjct: 278 KLSKLAVILFCIAIIFAIIVMAAHKFDVDK--------EVAIY----AICLAISIIPESL 325
Query: 435 PAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFI--- 491
AV++ +A+G M+K+N IVR L ++E LG + ICSDKTGT+T +M +++I
Sbjct: 326 IAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIPRF 385
Query: 492 -----------FDKIEGSDSSFLEFEITGSTYEPIGDV---------FLNGSKIKGADYE 531
F+ EG+ S F ++ D + D +
Sbjct: 386 GTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMD 445
Query: 532 TLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLG----- 586
+L + N + + ++ ++ G+ TE A+ V A+K + + + +G
Sbjct: 446 LFIKLLETAALANIATVFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKS 505
Query: 587 --RREQAIAVRQDVETKWKKEFTLEFSRDR--KSMSSYCTPLKSSKLGSSGPKLFVKGAP 642
+ +++ + + EF EF D K M+S ++ KGA
Sbjct: 506 NENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRMASIYEDNHGETY-----NIYAKGAF 560
Query: 643 EGVLERCT--HARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATA--------D 692
E ++E C+ + + G + PL +R L + + LR L A+ D
Sbjct: 561 ERIIECCSSSNGKDGVKISPLEDC--DRELIIANMESLAAEGLRVLAFASKSFDKADNND 618
Query: 693 NPLKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDN 752
+ LK E +N A + E +L F+G++G+ DPPR E ++ +C AGI V ++TGD
Sbjct: 619 DQLKNETLNRATA------ESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDF 672
Query: 753 KATAEAICRRIGV 765
TA+AI + +G+
Sbjct: 673 PETAKAIAQEVGI 685
Score = 82.0 bits (202), Expect = 1e-15
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 4/110 (3%)
Query: 94 LTSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 153
+ ++E VI I+ N ++G QE AE +++LK M VIR KS + + +
Sbjct: 78 MHDWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGKS--DAIDSHD 135
Query: 154 IVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAV 203
+VPGDI + GD IPAD+RLI+ + D+++LTGES+ VIK A
Sbjct: 136 LVPGDICLLKTGDTIPADLRLIE--TKNFDTDEALLTGESLPVIKDAHAT 183
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 195 bits (498), Expect = 5e-57
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 29/234 (12%)
Query: 232 ERNAESAIEALKEYEPEMG-KVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E A A++ALK+ P VIR K +++ A E+V GDIV + GD++PAD R+I
Sbjct: 17 EYRARKALKALKKLLPPTAATVIRDGK--EEEIPADELVVGDIVLLKPGDRVPADGRII- 73
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTG 350
++ +D+S LTGES+ V K + + +F+GT V +G+ + IV TG
Sbjct: 74 --EGSLEVDESALTGESLPVEKS-------------RGDTVFAGTVVLSGELKVIVTATG 118
Query: 351 LNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGS 410
+T +GKI + E + KTPLQ+ LD+ + L ++ + + V+ I D
Sbjct: 119 EDTELGKIARLVEEAKSAKTPLQRLLDKLAKILVPIVLALAILVFLIWFFRGGDFLE--- 175
Query: 411 WIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVET 464
A+A+ VAA PE LP + LA+G R+AKK +V++L ++ET
Sbjct: 176 -------ALLRALAVLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSALET 222
Score = 98.4 bits (246), Expect = 4e-23
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 6/101 (5%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMG-KVIRGDKSGVQKVRAKEIVPGDIV 160
+ILL+++ NA++ +QE A A++ALK+ P VIR K +++ A E+V GDIV
Sbjct: 1 IILLLVLINALLEAYQEYRARKALKALKKLLPPTAATVIRDGK--EEEIPADELVVGDIV 58
Query: 161 EVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 201
+ GD++PAD R+I ++ +D+S LTGES+ V K
Sbjct: 59 LLKPGDRVPADGRII---EGSLEVDESALTGESLPVEKSRG 96
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 182 bits (463), Expect = 1e-47
Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 26/261 (9%)
Query: 232 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKI 291
E A +A+EALK+ +V+R K Q++ A E+VPGD+V + +GD +PAD RL +
Sbjct: 76 ENKAGNAVEALKQSLAPKARVLRDGK--WQEIPASELVPGDVVRLKIGDIVPADCRLFE- 132
Query: 292 YSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGL 351
I++DQ+ LTGES+ V K T + +SG+ V G+A +V TG+
Sbjct: 133 -GDYIQVDQAALTGESLPVTKKTGDIA-------------YSGSTVKQGEAEAVVTATGM 178
Query: 352 NTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSW 411
NT GK + TE LQ+ L + G L +I ++ + + + G
Sbjct: 179 NTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFGRGESFREG-- 236
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 471
+ A+ L V IP +PAV++ +A+G +AKK AIV L ++E L ++
Sbjct: 237 -------LQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDIL 289
Query: 472 CSDKTGTLTTNQMSVSRMFIF 492
CSDKTGTLT N++S+ + F
Sbjct: 290 CSDKTGTLTLNKLSIDEILPF 310
Score = 98.2 bits (245), Expect = 7e-21
Identities = 44/111 (39%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 94 LTSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE 153
L ++V+ +IL +L+ NA +G +E A +A+EALK+ +V+R K Q++ A E
Sbjct: 52 LENWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRDGK--WQEIPASE 109
Query: 154 IVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVP 204
+VPGD+V + +GD +PAD RL + I++DQ+ LTGES+ V K T +
Sbjct: 110 LVPGDVVRLKIGDIVPADCRLFE--GDYIQVDQAALTGESLPVTKKTGDIA 158
Score = 67.4 bits (165), Expect = 3e-11
Identities = 67/293 (22%), Positives = 112/293 (38%), Gaps = 91/293 (31%)
Query: 638 VKGAPEGVLERCTHARIGSQKFPLTATLKNRILDL-TRQYGTGRDTLRCLGLATADNPLK 696
KGAP+ +L+ C K + ++ ++ +L +R Y R LG+A D
Sbjct: 384 TKGAPQVILDLC------DNKKEIEEKVEEKVDELASRGY-------RALGVARTD---- 426
Query: 697 PEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATA 756
+ + F+G++ + DPPR + ++I R R G+ V ++TGD+ A A
Sbjct: 427 ----------EEGRWH----FLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIA 472
Query: 757 EAICRRIG------------------------------------VFTEEEDTTGKSYSKA 780
+ RR+G VF E + + K
Sbjct: 473 KETARRLGLGTNIYTADVLLKGDNRDDLPSGLGEMVEDADGFAEVFPEHKYEIVEILQKR 532
Query: 781 EIGIAM-GSGT-------------AVA------KSASEMVLADDNFSSIVAAVEEGRAIY 820
+ M G G AVA +SA+++VL + S IV A+ E R I+
Sbjct: 533 GHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEPGLSVIVDAILESRKIF 592
Query: 821 NNMKQFIRYLISSNIGEVVSIFLTAAL---GLPEALIKKISTTNRGKKKKLSY 870
MK ++ Y I+ I V L + P ++ I+ N G ++Y
Sbjct: 593 QRMKSYVIYRIAETIRIVFFFGLLILILNFYFPPIMVVIIAILNDGTIMTIAY 645
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 149 bits (378), Expect = 7e-37
Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 20/263 (7%)
Query: 227 RMVQLERNAESAIEALKEYEPEMGKVIR---GDKSGVQ-KVRAKEIVPGDIVEVSVGDKI 282
+Q R AE A ALK V+R + +G +V +VPGD++E++ GD I
Sbjct: 105 GFIQESR-AERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDII 163
Query: 283 PADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQ-DKKNILFSGTNVAAGK 341
PAD R+I + + I+QS LTGES+ V K R +++N+ F GTNV +G
Sbjct: 164 PADARVIS--ARDLFINQSALTGESLPVEKF-VEDKRARDPEILERENLCFMGTNVLSGH 220
Query: 342 ARGIVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGH 401
A+ +V+ TG +T G + +E +T + + + L + + ++ V IN G
Sbjct: 221 AQAVVLATGSSTWFGSLAIAATERRG-QTAFDKGVKSVSKLLIRFMLVMVPVVLMIN-GL 278
Query: 402 FNDPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPS 461
G W++ ++ A+A+AV PE LP ++++ LA G M+KK IV+ L +
Sbjct: 279 MK-----GDWLEAFLF----ALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSA 329
Query: 462 VETLGCTSVICSDKTGTLTTNQM 484
++ G ++C+DKTGTLT +++
Sbjct: 330 IQNFGAMDILCTDKTGTLTQDKI 352
Score = 97.6 bits (243), Expect = 1e-20
Identities = 74/298 (24%), Positives = 122/298 (40%), Gaps = 67/298 (22%)
Query: 601 KWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKFP 660
+WKK + F DR+ +S + +L KGA E +L CTH R G
Sbjct: 405 RWKKVDEIPFDFDRRRLSVVVEN------RAEVTRLICKGAVEEMLTVCTHKRFGGAVVT 458
Query: 661 LTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFASYEVNLTFVGV 720
L+ + K+ + D+T + R +R + +AT + D D E L G
Sbjct: 459 LSESEKSELQDMTAEMN--RQGIRVIAVATKTLKVGEADFTKTD-------EEQLIIEGF 509
Query: 721 VGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAIC-------------------- 760
+G LDPP++ ++IA GI V V+TGDN+ IC
Sbjct: 510 LGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELS 569
Query: 761 -----------------------RRIGVFTEEEDTTG---------KSYSKAEIGIAMGS 788
R IG+ + T G + KA++GI++ +
Sbjct: 570 DEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDT 629
Query: 789 GTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAA 846
+AK AS+++L + + + V EGR + N+ ++++ SSN G V S+ + +A
Sbjct: 630 AADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASA 687
Score = 80.7 bits (199), Expect = 2e-15
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIR---GDKSGVQ-KVRAKEIVPG 157
+I L+++A+ ++G QE AE A ALK V+R + +G +V +VPG
Sbjct: 93 IIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPG 152
Query: 158 DIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKNGPQMCE 217
D++E++ GD IPAD R+I + + I+QS LTGES+ V K V D RA E
Sbjct: 153 DLIELAAGDIIPADARVIS--ARDLFINQSALTGESLPVEKF---VEDKRARDPEILERE 207
Query: 218 N 218
N
Sbjct: 208 N 208
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 139 bits (351), Expect = 2e-33
Identities = 79/270 (29%), Positives = 142/270 (52%), Gaps = 25/270 (9%)
Query: 227 RMVQLERNAESAIEALKEYEPEMGKVIRGD----KSGVQKVRAKEIVPGDIVEVSVGDKI 282
+Q R+ ++A +ALK V+R ++G ++ ++VPGDI++++ GD I
Sbjct: 139 NFIQEARSTKAA-DALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMI 197
Query: 283 PADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQ----DKKNILFSGTNVA 338
PAD+R+++ + + + Q+ LTGES+ V K R + + F GTNV
Sbjct: 198 PADLRILQ--ARDLFVAQASLTGESLPVEK----FATTRQPEHSNPLECDTLCFMGTNVV 251
Query: 339 AGKARGIVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAIN 398
+G A+ +V+ TG NT G++ +SE + QQ + L + + ++ V IN
Sbjct: 252 SGTAQAVVIATGANTWFGQLAGRVSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLIN 311
Query: 399 IGHFNDPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRS 458
G+ G W + A++ +AV L PE LP ++T+ LA G +++K+ IV+
Sbjct: 312 -GYTK-----GDWWEAALFALSVAVGLT----PEMLPMIVTSTLARGAVKLSKQKVIVKR 361
Query: 459 LPSVETLGCTSVICSDKTGTLTTNQMSVSR 488
L +++ G ++C+DKTGTLT +++ +
Sbjct: 362 LDAIQNFGAMDILCTDKTGTLTQDKIVLEN 391
Score = 85.5 bits (212), Expect = 7e-17
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 595 RQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI 654
+ + ++W+K + F +R+ MS + +L KGA E +L C+ R
Sbjct: 434 ARSLASRWQKIDEIPFDFERRRMSVVV------AENTEHHQLICKGALEEILNVCSQVRH 487
Query: 655 GSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFASYEVN 714
+ PL + RI +T R LR + +AT P + D AD E +
Sbjct: 488 NGEIVPLDDIMLRRIKRVTDTLN--RQGLRVVAVATKYLPAREGDYQRAD-------ESD 538
Query: 715 LTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
L G + LDPP++ ++ +A+G+ V ++TGD++ A +C +G+
Sbjct: 539 LILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGL 589
Score = 64.3 bits (157), Expect = 2e-10
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 11/122 (9%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGD----KSGVQKVRAKEIVPG 157
VI L++ + ++ QE + A +ALK V+R ++G ++ ++VPG
Sbjct: 127 VIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPG 186
Query: 158 DIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPR-AEKNGPQMC 216
DI++++ GD IPAD+R+++ + + + Q+ LTGES+ V K R E + P C
Sbjct: 187 DIIKLAAGDMIPADLRILQ--ARDLFVAQASLTGESLPVEK----FATTRQPEHSNPLEC 240
Query: 217 EN 218
+
Sbjct: 241 DT 242
Score = 48.5 bits (116), Expect = 2e-05
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 780 AEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVV 839
A+IGI++ +A+ A++++L + + + V EGR + NM ++I+ SSN G V
Sbjct: 656 ADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVF 715
Query: 840 SIFLTAALGLP 850
S+ + +A LP
Sbjct: 716 SVLVASAF-LP 725
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 128 bits (325), Expect = 2e-30
Identities = 91/271 (33%), Positives = 140/271 (51%), Gaps = 34/271 (12%)
Query: 227 RMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVR----AKEIVPGDIVEVSVGDKI 282
R Q R+ ++A EALK V+R +G + VR +E+VPGDIV +S GD I
Sbjct: 128 RFWQEFRSNKAA-EALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMI 186
Query: 283 PADIRLIKIYSTTIRIDQSILTGESVSV----------IKHTDAVPDPRAVNQDKKNILF 332
PAD+RLI+ S + I Q++LTGE++ V K DA+ D D NI F
Sbjct: 187 PADVRLIE--SRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICF 244
Query: 333 SGTNVAAGKARGIVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICV 392
GTNV +G A +V+ TG T G + + T +T + ++ L + + ++
Sbjct: 245 MGTNVVSGTATAVVVATGSRTYFGSLAKSIVGT-RAQTAFDRGVNSVSWLLIRFMLVMVP 303
Query: 393 AVWAINIGHFNDPAHG---GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 449
V IN G G W++ ++ A+A+AV PE LP ++++ LA G M
Sbjct: 304 VVLLIN---------GFTKGDWLEALLF----ALAVAVGLTPEMLPMIVSSNLAKGAIAM 350
Query: 450 AKKNAIVRSLPSVETLGCTSVICSDKTGTLT 480
A++ +V+ L +++ G V+C+DKTGTLT
Sbjct: 351 ARRKVVVKRLNAIQNFGAMDVLCTDKTGTLT 381
Score = 77.4 bits (191), Expect = 2e-14
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 636 LFVKGAPEGVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPL 695
L KGA E +L TH R G PL + R+L L Y D R L +AT + P
Sbjct: 467 LICKGAVEEMLAVATHVRDGDTVRPLDEARRERLLALAEAYN--ADGFRVLLVATREIPG 524
Query: 696 KPEDMNLADSTKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKAT 755
+ + E +L G + LDPP++ +IA R G+ V V+TGDN
Sbjct: 525 GESRAQYS-----TADERDLVIRGFLTFLDPPKESAAPAIAALRENGVAVKVLTGDNPIV 579
Query: 756 AEAICRRIG 764
ICR +G
Sbjct: 580 TAKICREVG 588
Score = 74.3 bits (183), Expect = 2e-13
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 8/124 (6%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVR----AKEIVPG 157
+IL +++ + ++ WQE + A EALK V+R +G + VR +E+VPG
Sbjct: 116 IILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPG 175
Query: 158 DIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKNGPQMCE 217
DIV +S GD IPAD+RLI+ S + I Q++LTGE++ V K+ D + A K+ + +
Sbjct: 176 DIVHLSAGDMIPADVRLIE--SRDLFISQAVLTGEALPVEKY-DTLGAV-AGKSADALAD 231
Query: 218 NDRN 221
++ +
Sbjct: 232 DEGS 235
Score = 38.5 bits (90), Expect = 0.021
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 780 AEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYL---ISSNIG 836
A++GI++ SG +AK +++++L + + + V +GR + N+ I+YL SSN G
Sbjct: 656 ADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNI---IKYLNMTASSNFG 712
Query: 837 EVVSIFLTAA 846
V S+ + +A
Sbjct: 713 NVFSVLVASA 722
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 123 bits (311), Expect = 3e-29
Identities = 70/272 (25%), Positives = 115/272 (42%), Gaps = 31/272 (11%)
Query: 233 RNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIY 292
A A+ AL P +V++GD S ++V +E+ GDIV V G++IP D +I
Sbjct: 40 GRASDALSALLALAPSTARVLQGDGS-EEEVPVEELQVGDIVIVRPGERIPVDGVVISGE 98
Query: 293 STTIRIDQSILTGESVSVIKHT-DAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGL 351
S +D+S LTGES+ V K D V F+GT G V G
Sbjct: 99 SE---VDESALTGESMPVEKKEGDEV--------------FAGTINGDGSLTIRVTKLGE 141
Query: 352 NTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSW 411
++ + +I + E + K P+Q+ D + I + + + +
Sbjct: 142 DSTLAQIVELVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGAL------- 194
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 471
GA+Y A+A+ V A P L + + A++ +++ ++E L +
Sbjct: 195 --GALYR---ALAVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTV 249
Query: 472 CSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFL 503
DKTGTLTT + +V + D S+ L
Sbjct: 250 VFDKTGTLTTGKPTVVDIEPLDDASISEEELL 281
Score = 73.8 bits (182), Expect = 2e-13
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 35/175 (20%)
Query: 709 ASYEVNLTFVGVVGMLDPPRKEVFDSIAR-CRAAGIRVIVITGDNKATAEAICRRIGV-- 765
V+ +GV+ + D R E ++IA RA GI+++++TGDN++ AEA+ +G+
Sbjct: 367 VFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE 426
Query: 766 ----------------FTEEEDTTG---------KSYSKAEIGIAMGSGTAVAKSASEMV 800
EE + + A++GIAMG+G+ VA A+++V
Sbjct: 427 VHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIV 486
Query: 801 LADDNFSSIVAAVEEGRAIYNNMKQ-------FIRYLISSNIGEVVSIFLTAALG 848
L +D+ SS+ A++ R +KQ + I G ++ ++L A L
Sbjct: 487 LLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYNLVAIPLAAGGLLPLWLLAVLL 541
Score = 70.3 bits (173), Expect = 2e-12
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 99 EPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGD 158
E ++L + + + + A A+ AL P +V++GD S ++V +E+ GD
Sbjct: 20 EGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGS-EEEVPVEELQVGD 78
Query: 159 IVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIK 198
IV V G++IP D +I S +D+S LTGES+ V K
Sbjct: 79 IVIVRPGERIPVDGVVISGESE---VDESALTGESMPVEK 115
Score = 30.7 bits (70), Expect = 4.3
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 39/139 (28%)
Query: 108 IANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDK 167
+A AIV ++R E + E P G + G ++VR +G+
Sbjct: 295 LARAIVRYAKKRGLELPKQEDVEEVPGKG--VEATVDGGEEVR-------------IGNP 339
Query: 168 IPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKNGPQMCENDRNEHKCGR 227
++ + I ++ +++ G++V + + G
Sbjct: 340 RFLELAIEPISASPDLLNEGESQGKTVVFVA---------------------VDGELLGV 378
Query: 228 MV---QLERNAESAIEALK 243
+ QL A+ AI ALK
Sbjct: 379 IALRDQLRPEAKEAIAALK 397
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 121 bits (305), Expect = 6e-28
Identities = 126/541 (23%), Positives = 199/541 (36%), Gaps = 95/541 (17%)
Query: 247 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSV--GDKIPADIRLIKIYSTTIRIDQSILT 304
P+ VIR K + + E+VPGDIV + +P D L+ S + +++S+LT
Sbjct: 228 PQSVIVIRNGKW--VTIASDELVPGDIVSIPRPEEKTMPCDSVLL---SGSCIVNESMLT 282
Query: 305 GESVSVIKH--TDAVPDPRAV---NQDKKNILFSGTNV-------AAGKARGIVMGTGLN 352
GESV V+K D D + KK++LF GT + IV+ TG +
Sbjct: 283 GESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFS 342
Query: 353 TAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSWI 412
T+ G++ +++ L K F I+ +AV A+ IG + I
Sbjct: 343 TSKGQL---------VRSILYPKPRVFKFYKDSFKFILFLAVLAL-IGF------IYTII 386
Query: 413 KGAVY----YFKIAVALAVAAI--PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLG 466
+ I +L + I P LPA ++ + R+ KK S + G
Sbjct: 387 ELIKDGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAG 446
Query: 467 CTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIK 526
V C DKTGTLT + + + + S + +T + +
Sbjct: 447 KIDVCCFDKTGTLTEDGLDLRGVQGL-----SGNQEFLKIVTEDSSLKPSITHKALA--- 498
Query: 527 GADYETLHELGTICIMCNDSAI-DFNEFKQAFEKVGEA-TETALIVLAEKLNPFNVSKSG 584
T H L + + D + K FE G E + V
Sbjct: 499 -----TCHSLTKL----EGKLVGDPLDKK-MFEATGWTLEEDDESAEPTSILA-VVRTDD 547
Query: 585 LGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEG 644
+ I +FS + MS ++ S P FVKGAPE
Sbjct: 548 PPQELSIIRR-------------FQFSSALQRMSVIV---STNDERS--PDAFVKGAPET 589
Query: 645 VLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLAD 704
+ C+ + S + + TR+ R L LA L + A
Sbjct: 590 IQSLCSPETVPSD-------YQEVLKSYTRE------GYRVLALAY--KELPKLTLQKAQ 634
Query: 705 STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 764
+ E NLTF+G + +P + + + I + A IR ++ITGDN TA + R G
Sbjct: 635 DLSRDAVESNLTFLGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECG 694
Query: 765 V 765
+
Sbjct: 695 I 695
Score = 50.4 bits (121), Expect = 4e-06
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 103 ILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEV 162
I+ + + + V+Q R + + ++P+ VIR K + + E+VPGDIV +
Sbjct: 199 IVFMSSTSISLSVYQIRKQMQRLRDMV-HKPQSVIVIRNGKW--VTIASDELVPGDIVSI 255
Query: 163 SV--GDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKNGPQMCENDR 220
+P D L+ S + +++S+LTGESV V+K +PD + + E +
Sbjct: 256 PRPEEKTMPCDSVLL---SGSCIVNESMLTGESVPVLK--FPIPDNGDDDEDLFLYETSK 310
Query: 221 N 221
Sbjct: 311 K 311
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 98.1 bits (245), Expect = 2e-24
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 23/112 (20%)
Query: 541 IMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVET 600
+CND+ NE K E +G+ TE+AL+V AEKL +++
Sbjct: 1 ALCNDAKFGENEEKNGGEIIGDPTESALLVFAEKLGIDV----------------EELRA 44
Query: 601 KWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPK-LFVKGAPEGVLERCTH 651
++ + + F+ +RK MS+ KL LFVKGAPE +LERC+
Sbjct: 45 RYPRVAEIPFNSERKRMSTVH------KLEDDDGYRLFVKGAPERILERCST 90
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 108 bits (271), Expect = 2e-24
Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 35/260 (13%)
Query: 232 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKI 291
A A++AL E P+ +V+RG +++V +E+ GD+V V G+++P D ++
Sbjct: 39 SGRARRALKALMELAPDTARVLRGG--SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSG 96
Query: 292 YSTTIRIDQSILTGESVSVIKHT-DAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTG 350
ST +D+S LTGESV V K D V A+N D G +V
Sbjct: 97 TST---VDESALTGESVPVEKAPGDEVFAG-AINLD-------------GVLTIVVTKLP 139
Query: 351 LNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGS 410
++ I KI + E + K Q+ +D F + V+ I +A+W +
Sbjct: 140 ADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLV-----------PG 188
Query: 411 WIKGAVYYFKIAVALAVAAIPEGLPAVITTCLAL--GTRRMAKKNAIVRSLPSVETLGCT 468
+K ++ A+ L V A P L VI+ A A+ +++ ++E L
Sbjct: 189 LLKRWPFWVYRALVLLVVASPCAL--VISAPAAYLSAISAAARHGILIKGGAALEALAKI 246
Query: 469 SVICSDKTGTLTTNQMSVSR 488
+ DKTGTLTT + V
Sbjct: 247 KTVAFDKTGTLTTGRPKVVD 266
Score = 66.2 bits (162), Expect = 5e-11
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVE 161
++LL+ + + A A++AL E P+ +V+RG +++V +E+ GD+V
Sbjct: 23 LLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGG--SLEEVAVEELKVGDVVV 80
Query: 162 VSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIK 198
V G+++P D ++ ST +D+S LTGESV V K
Sbjct: 81 VKPGERVPVDGVVLSGTST---VDESALTGESVPVEK 114
Score = 64.6 bits (158), Expect = 1e-10
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 30/171 (17%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGI-RVIVITGDNKATAEAICRRIGV------ 765
+ T++G + + D PR + ++IA +A GI +V+++TGD +A AE + R +G+
Sbjct: 349 RDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAE 408
Query: 766 ------------FTEEEDTTG---------KSYSKAEIGIAMG-SGTAVAKSASEMVLAD 803
E+ + + A++GIAMG SG+ VA +++VL +
Sbjct: 409 LLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLN 468
Query: 804 DNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEALI 854
D+ S + A+ R +KQ + + I ++ + L L L A++
Sbjct: 469 DDLSRLPQAIRLARRTRRIVKQNVVIALGI-ILLLILLALFGVLPLWLAVL 518
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 106 bits (266), Expect = 2e-23
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 36/269 (13%)
Query: 233 RNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIY 292
A AI AL + P+ V+RGD ++V +E+ GDIV V G++IP D ++
Sbjct: 196 GRARRAIRALLDLAPKTATVVRGDG-EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGS 254
Query: 293 STTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLN 352
S+ +D+S+LTGES+ P + + +F+GT G V G +
Sbjct: 255 SS---VDESMLTGESL---------PVEKKPGDE----VFAGTVNLDGSLTIRVTRVGAD 298
Query: 353 TAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSK---VISIICVAVWAINIGHFNDPAHGG 409
T + +I + E + K P+Q+ D VI+ + A+W + G + A
Sbjct: 299 TTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGGGDWETA--- 355
Query: 410 SWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLAL--GTRRMAKKNAIVRSLPSVETLGC 467
A+A+ V A P L + T A+ G R A++ +++ ++E L
Sbjct: 356 ---------LYRALAVLVIACPCAL--GLATPTAILVGIGRAARRGILIKGGEALERLAK 404
Query: 468 TSVICSDKTGTLTTNQMSVSRMFIFDKIE 496
+ DKTGTLT + V+ + D E
Sbjct: 405 VDTVVFDKTGTLTEGKPEVTDVVALDGDE 433
Score = 86.9 bits (216), Expect = 2e-17
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 27/140 (19%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG---VFTE- 768
V+ VGV+ + D R + ++IA +A GI+V+++TGDN+ TAEAI + +G V E
Sbjct: 524 VDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAEL 583
Query: 769 -EEDTTG------KSYSK----------------AEIGIAMGSGTAVAKSASEMVLADDN 805
ED K A++GIAMGSGT VA A+++VL D+
Sbjct: 584 LPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDD 643
Query: 806 FSSIVAAVEEGRAIYNNMKQ 825
S++ A++ RA +KQ
Sbjct: 644 LSAVPEAIDLSRATRRIIKQ 663
Score = 66.5 bits (163), Expect = 5e-11
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 101 FVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIV 160
+I L L+ + + A AI AL + P+ V+RGD ++V +E+ GDIV
Sbjct: 179 MLIFLFLLGRYL-EARAKGRARRAIRALLDLAPKTATVVRGDG-EEEEVPVEEVQVGDIV 236
Query: 161 EVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIK 198
V G++IP D ++ S+ +D+S+LTGES+ V K
Sbjct: 237 LVRPGERIPVDGVVVSGSSS---VDESMLTGESLPVEK 271
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 100 bits (252), Expect = 6e-22
Identities = 64/270 (23%), Positives = 118/270 (43%), Gaps = 43/270 (15%)
Query: 226 GRMVQL--ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIP 283
GR +++ + A A+ L + +P ++ D + V + + PGDIV V G+KIP
Sbjct: 67 GRWLEMLAKGRASDALSKLAKLQPSTATLLTDDGEIEE-VPVELLQPGDIVRVLPGEKIP 125
Query: 284 ADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKAR 343
D +I+ S +D+S++TGES+ V K + + +GT G
Sbjct: 126 VDGTVIEGESE---VDESLVTGESLPVPKKVG-------------DPVIAGTVNGTGSLV 169
Query: 344 GIVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSK-------VISIICVAVWA 396
TG +T + +I + + ++ K P+Q+ ++++ I++I +W
Sbjct: 170 VRATATGEDTTLAQIVRLVRQAQQSKAPIQR----LADKVAGYFVPVVIAIALITFVIWL 225
Query: 397 INIGHFNDPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIV 456
I F V+ ++AV + + A P L T +A+ T AK ++
Sbjct: 226 ILGADF-------------VFALEVAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLI 272
Query: 457 RSLPSVETLGCTSVICSDKTGTLTTNQMSV 486
+ ++E + DKTGTLT + +V
Sbjct: 273 KDGDALERAANIDTVVFDKTGTLTQGKPTV 302
Score = 68.1 bits (167), Expect = 1e-11
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 27/141 (19%)
Query: 712 EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFT---- 767
VN GV+ + D + E + I + GI +++TGDN+ TA+A+ + +G+
Sbjct: 400 AVNGELAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIENVRAE 459
Query: 768 ----EEEDTTGKSYSK-------------------AEIGIAMGSGTAVAKSASEMVLADD 804
++ K K A++GIA+G+GT VA A+++VL +
Sbjct: 460 VLPDDKAALIKKLQEKGKVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADVVLLRN 519
Query: 805 NFSSIVAAVEEGRAIYNNMKQ 825
+ + + A++ R +KQ
Sbjct: 520 DLNDVATAIDLSRKTLRRIKQ 540
Score = 64.2 bits (157), Expect = 2e-10
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 97 FVEPFVILLILIANAIVGVWQERNAES----AIEALKEYEPEMGKVIRGDKSGVQKVRAK 152
F + +L+ I +G W E A+ A+ L + +P ++ D + V +
Sbjct: 53 FFDASAMLITFIL---LGRWLEMLAKGRASDALSKLAKLQPSTATLLTDDGEIEE-VPVE 108
Query: 153 EIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 201
+ PGDIV V G+KIP D +I+ S +D+S++TGES+ V K
Sbjct: 109 LLQPGDIVRVLPGEKIPVDGTVIEGESE---VDESLVTGESLPVPKKVG 154
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 80.4 bits (199), Expect = 2e-15
Identities = 74/275 (26%), Positives = 114/275 (41%), Gaps = 53/275 (19%)
Query: 235 AESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYST 294
A + AL PE +R + ++V ++ PGD++EV+ G ++PAD +L+ S
Sbjct: 230 ARRGVSALMALVPETATRLRDGER--EEVAIADLRPGDVIEVAAGGRLPADGKLL---SP 284
Query: 295 TIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGK------ARGIVMG 348
D+S LTGES+ V + T G V AG V+
Sbjct: 285 FASFDESALTGESIPVERAT-------------------GEKVPAGATSVDRLVTLEVLS 325
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
+AI +I + E EE + P+++ +D F + I ++ + V + F P
Sbjct: 326 EPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFAAPWQ- 384
Query: 409 GSWI-KGAVYYFKIAVALAVAAIPEGL----PAVITTCLALGTRRMA--KKNAIVRSLPS 461
WI +G + L + P L PA IT+ LA RR A K A + L
Sbjct: 385 -EWIYRG--------LTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGR 435
Query: 462 VETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKIE 496
V T + DKTGTLT + V+ + I
Sbjct: 436 VTT------VAFDKTGTLTEGKPQVTDIHPATGIS 464
Score = 59.2 bits (144), Expect = 8e-09
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 102 VILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVE 161
V+LL LI + G + A + AL PE +R + ++V ++ PGD++E
Sbjct: 212 VLLLFLIGERLEG-YAASRARRGVSALMALVPETATRLRDGER--EEVAIADLRPGDVIE 268
Query: 162 VSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHT-DAVP 204
V+ G ++PAD +L+ S D+S LTGES+ V + T + VP
Sbjct: 269 VAAGGRLPADGKLL---SPFASFDESALTGESIPVERATGEKVP 309
Score = 53.1 bits (128), Expect = 6e-07
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 41/159 (25%)
Query: 716 TFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV---------- 765
+G++ + D R + +I+ +A GI+ +++TGDN A AI +G+
Sbjct: 558 DVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRAGLLPED 617
Query: 766 -------FTEEEDTT--------GKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIV 810
+ + A IGIAMGSGT VA ++ L + +
Sbjct: 618 KVKAVTELNQHAPLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLA 677
Query: 811 AAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGL 849
+E RA + N++Q NI T ALGL
Sbjct: 678 QMIELSRATHANIRQ--------NI--------TIALGL 700
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 65.1 bits (158), Expect = 1e-10
Identities = 67/257 (26%), Positives = 123/257 (47%), Gaps = 30/257 (11%)
Query: 232 ERNAESAIEALKEYEPEM-GKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK 290
E ++ AL++ + EM + I+ D S + + A ++ G IV V+ G++IP D ++IK
Sbjct: 87 EGRGKAQANALRQTQTEMKARRIKQDGS-YEMIDASDLKKGHIVRVATGEQIPNDGKVIK 145
Query: 291 IYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTG 350
+T +D+S +TGES VIK + D N++ GT+VA+ +
Sbjct: 146 GLAT---VDESAITGESAPVIKESGG---------DFDNVI-GGTSVASDWLEVEITSEP 192
Query: 351 LNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAI-NIGHFNDPAHGG 409
++ + K+ + KTP + L L+ + ++ + ++ + +FN
Sbjct: 193 GHSFLDKMIGLVEGATRKKTPNEIALFTLLMTLTIIFLVVILTMYPLAKFLNFN------ 246
Query: 410 SWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTS 469
+ +ALAV IP + +++ G R+ + N + +S SVET G +
Sbjct: 247 -------LSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSVETCGDVN 299
Query: 470 VICSDKTGTLT-TNQMS 485
V+ DKTGT+T N+M+
Sbjct: 300 VLILDKTGTITYGNRMA 316
Score = 52.0 bits (124), Expect = 1e-06
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 31/215 (14%)
Query: 714 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV-------- 765
+ +GV+ + D + + + R GI ++ TGDN+ TA I + GV
Sbjct: 429 DNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECK 488
Query: 766 ------FTEEEDTTGK-------------SYSKAEIGIAMGSGTAVAKSASEMVLADDNF 806
EE G + ++A +G+AM SGT AK A+ ++ D N
Sbjct: 489 PEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAMNSGTMSAKEAANLIDLDSNP 548
Query: 807 SSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSI----FLTAALGLPEALIKKISTTNR 862
+ ++ V G+ + + I+++I + +I F+ A + I + +
Sbjct: 549 TKLMEVVLIGKQLLMTRGSLTTFSIANDIAKYFAILPAMFMAAMPAMNHLNIMHLHSPES 608
Query: 863 GKKKKLSYNFLDISLLGPAIHYQVDLTGGPDQVYL 897
L +N L I LL P V G Q L
Sbjct: 609 AVLSALIFNALIIVLLIPIAMKGVKFKGASTQTIL 643
Score = 50.1 bits (119), Expect = 5e-06
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 101 FVILLILIANAIVGVWQERNAESAIEALKEYEPEM-GKVIRGDKSGVQKVRAKEIVPGDI 159
++LL L+ E ++ AL++ + EM + I+ D S + + A ++ G I
Sbjct: 70 IILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGS-YEMIDASDLKKGHI 128
Query: 160 VEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHT 200
V V+ G++IP D ++IK +T +D+S +TGES VIK +
Sbjct: 129 VRVATGEQIPNDGKVIKGLAT---VDESAITGESAPVIKES 166
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 61.8 bits (150), Expect = 1e-09
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 232 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKI 291
E ++ ++LK + + D + KV A ++ GDIV V GD IP D +I+
Sbjct: 88 EGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEG 147
Query: 292 YSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGL 351
++ +D+S +TGES VIK + D +V GT + +
Sbjct: 148 VAS---VDESAITGESAPVIKESGG--DFASVT--------GGTRILSDWLVVECTANPG 194
Query: 352 NTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSW 411
T + ++ + + KTP + L L+ V ++ +W A+GG+
Sbjct: 195 ETFLDRMIALVEGAQRRKTPNEIALTILLIALTLVFLLVTATLWPFA-------AYGGNA 247
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 471
I + VAL V IP + +++ G R+ N I S +VE G +
Sbjct: 248 IS-----VTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLGFNVIATSGRAVEACGDVDTL 302
Query: 472 CSDKTGTLT 480
DKTGT+T
Sbjct: 303 LLDKTGTIT 311
Score = 59.5 bits (144), Expect = 7e-09
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 719 GVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV--FTEE------- 769
GV+ + D + + + A+ R GI+ I+ITGDN+ TA AI GV F E
Sbjct: 439 GVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKI 498
Query: 770 -----EDTTGK-------------SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVA 811
E GK + ++A++G+AM SGT AK A+ MV D + + ++
Sbjct: 499 ALIRQEQAEGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIE 558
Query: 812 AVEEGRAIYNNMKQFIRYLISSNIGE----VVSIFLTAALGLPEALIKKISTTNRGKKKK 867
V G+ + + I++++ + + +IF A L I + + +
Sbjct: 559 VVHIGKQLLITRGALTTFSIANDVAKYFAIIPAIFAAAYPQLQALNIMCLHSPDSAILSA 618
Query: 868 LSYNFLDISLLGP 880
L +N L I L P
Sbjct: 619 LIFNALIIPALIP 631
Score = 42.9 bits (101), Expect = 7e-04
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 106 ILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVG 165
+L AN V + R A ++LK + + D + KV A ++ GDIV V G
Sbjct: 77 VLFANFAEAVAEGRGKAQA-DSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLVEAG 135
Query: 166 DKIPADIRLIKIYSTTIRIDQSILTGESVSVIK 198
D IP D +I+ ++ +D+S +TGES VIK
Sbjct: 136 DVIPCDGEVIEGVAS---VDESAITGESAPVIK 165
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 59.4 bits (144), Expect = 8e-09
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 44/158 (27%)
Query: 725 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTG---------- 774
DP R + ++ R AG R++++TGDN TA AI + G+ +E G
Sbjct: 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGI---DEVIAGVLPDGKAEAI 705
Query: 775 --------------------KSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVE 814
+ ++A++GIAMG G+ VA + + L + + A+
Sbjct: 706 KRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALA 765
Query: 815 EGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGLPEA 852
RA NMKQ ++ F+ +LG+P A
Sbjct: 766 ISRATLRNMKQ-----------NLLGAFIYNSLGIPIA 792
Score = 44.7 bits (106), Expect = 2e-04
Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 34/264 (12%)
Query: 237 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 296
A+E L + P +V+ + G + V ++ PG ++ ++ GD++P D +I
Sbjct: 312 KALEKLLDLTPPTARVVTDE--GEKSVPLADVQPGMLLRLTTGDRVPVD---GEITQGEA 366
Query: 297 RIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAG----KARGIVMGTGLN 352
+D+++LTGE +P + + + +GT V G +A + T L+
Sbjct: 367 WLDEAMLTGE---------PIPQQKGEG----DSVHAGTVVQDGSVLFRASAVGSHTTLS 413
Query: 353 TAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSWI 412
I +R S EI L K+ + VI+++ A+W +F PA
Sbjct: 414 RIIRMVRQAQSSKPEIGQ-LADKISAVFVPVVVVIALVSAAIW-----YFFGPA------ 461
Query: 413 KGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 472
VY IA + + A P L + G R A+ +VR +++ +
Sbjct: 462 PQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLV 521
Query: 473 SDKTGTLTTNQMSVSRMFIFDKIE 496
DKTGTLT + V + F+ ++
Sbjct: 522 FDKTGTLTEGKPQVVAVKTFNGVD 545
Score = 33.6 bits (77), Expect = 0.67
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 123 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 182
A+E L + P +V+ + G + V ++ PG ++ ++ GD++P D +I
Sbjct: 312 KALEKLLDLTPPTARVVTDE--GEKSVPLADVQPGMLLRLTTGDRVPVD---GEITQGEA 366
Query: 183 RIDQSILTGESV 194
+D+++LTGE +
Sbjct: 367 WLDEAMLTGEPI 378
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 57.0 bits (138), Expect = 4e-08
Identities = 81/350 (23%), Positives = 132/350 (37%), Gaps = 74/350 (21%)
Query: 454 AIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFI--------FDKIE-------GS 498
A VR+ E LG I SDKTGTLT N M + I F +I+ GS
Sbjct: 345 ASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDGIRERLGS 404
Query: 499 DSSFLEFEI-TGSTYEPIGDVFLNGSKIKGADYETLHELGTICIMCNDSAIDFNEFKQAF 557
+ + + ++ K + + ++E +C+ +FN+
Sbjct: 405 YVENENSMLVESKGFTFVDPRLVDLLKTNKPNAKRINEFFLALALCHTVVPEFND-DGPE 463
Query: 558 EKVGEAT---ETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVETKWKKEF----TLEF 610
E +A E AL+ A +V R ++I++ + KE+ LEF
Sbjct: 464 EITYQAASPDEAALVKAAR-----DVGFVFFERTPKSISLLIE-MHGETKEYEILNVLEF 517
Query: 611 SRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKFPLTATLKNRIL 670
+ DRK MS + KL KGA + +R ++ N++
Sbjct: 518 NSDRKRMSVIV------RNPDGRIKLLCKGADTVIFKR-------------LSSGGNQVN 558
Query: 671 DLTR----QYGTGRDTLRCLGLATADNPLKPED-------MNLADST---------KFAS 710
+ T+ Y + LR L +A + L E+ N A + A
Sbjct: 559 EETKEHLENY--ASEGLRTLCIAYRE--LSEEEYEEWNEEYNEASTALTDREEKLDVVAE 614
Query: 711 Y-EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 759
E +L +G + D ++ V ++I R AGI++ V+TGD TA I
Sbjct: 615 SIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINI 664
Score = 32.3 bits (74), Expect = 1.4
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 95 TSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI 154
TS V +L++ + + R + KE + +V+ G V ++ K++
Sbjct: 52 TSIVPLAFVLIVTAIKEAIEDIRRRRRD------KEVNNRLTEVLEGHGQFV-EIPWKDL 104
Query: 155 VPGDIVEVSVGDKIPADIRLI 175
GDIV+V ++IPAD+ L+
Sbjct: 105 RVGDIVKVKKDERIPADLLLL 125
Score = 31.2 bits (71), Expect = 3.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 262 KVRAKEIVPGDIVEVSVGDKIPADIRLI 289
++ K++ GDIV+V ++IPAD+ L+
Sbjct: 98 EIPWKDLRVGDIVKVKKDERIPADLLLL 125
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 55.4 bits (134), Expect = 1e-07
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 717 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV----------- 765
+GV+ + D + + + A R GI+ ++ITGDN TA AI GV
Sbjct: 438 ILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAEATPED 497
Query: 766 ---FTEEEDTTGK-------------SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSI 809
+E G+ + ++A++G+AM SGT AK A+ MV D N + +
Sbjct: 498 KLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKL 557
Query: 810 VAAVEEGRAI 819
+ VE G+ +
Sbjct: 558 IEVVEIGKQL 567
Score = 55.0 bits (133), Expect = 1e-07
Identities = 64/260 (24%), Positives = 102/260 (39%), Gaps = 68/260 (26%)
Query: 249 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESV 308
+ +++R D S ++ V A E+ GDIV V G+ IP+D +I+ ++ +D+S +TGES
Sbjct: 105 IARLLRADGS-IEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVAS---VDESAITGESA 160
Query: 309 SVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAIGKIR--TEMSET- 365
VI+ SG + ++ + GT + + KIR ET
Sbjct: 161 PVIRE-------------------SGGDFSS-----VTGGTRVLSDWLKIRITANPGETF 196
Query: 366 -----------EEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSWIKG 414
E KTP + L L+ + + ++ + G
Sbjct: 197 LDRMIALVEGAERQKTPNEIALTILLSGLTLIFLLAVATLYPF-----------AIYSGG 245
Query: 415 AVYYFKIAVALAVAAIPEGLPAVITTCLAL-------GTRRMAKKNAIVRSLPSVETLGC 467
+ VAL V IP TT L G R+ + N I S +VE G
Sbjct: 246 GAASVTVLVALLVCLIP-------TTIGGLLSAIGIAGMDRVTQFNVIATSGRAVEAAGD 298
Query: 468 TSVICSDKTGTLTT-NQMSV 486
+ DKTGT+T N+ +
Sbjct: 299 VDTLLLDKTGTITLGNRQAS 318
Score = 43.8 bits (104), Expect = 4e-04
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 135 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESV 194
+ +++R D S ++ V A E+ GDIV V G+ IP+D +I+ ++ +D+S +TGES
Sbjct: 105 IARLLRADGS-IEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVAS---VDESAITGESA 160
Query: 195 SVIK 198
VI+
Sbjct: 161 PVIR 164
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 52.1 bits (126), Expect = 1e-06
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 33/130 (25%)
Query: 717 FVGVVGMLD---PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------FT 767
+GV+ + D P KE F + R GI+ ++ITGDN TA AI GV T
Sbjct: 436 VLGVIYLKDIVKPGIKERFAEL---RKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEAT 492
Query: 768 EE--------EDTTGK-------------SYSKAEIGIAMGSGTAVAKSASEMVLADDNF 806
E E G+ + ++A++G+AM SGT AK A MV D N
Sbjct: 493 PEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNP 552
Query: 807 SSIVAAVEEG 816
+ ++ VE G
Sbjct: 553 TKLIEVVEIG 562
Score = 47.5 bits (114), Expect = 3e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 135 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK-IYSTTIRIDQSILTGES 193
+ +R + ++V A E+ GDIV V G+ IPAD +I+ + S +D+S +TGES
Sbjct: 105 FARKLREPGA-AEEVPATELRKGDIVLVEAGEIIPADGEVIEGVAS----VDESAITGES 159
Query: 194 VSVIK 198
VI+
Sbjct: 160 APVIR 164
Score = 47.5 bits (114), Expect = 3e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 249 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIK-IYSTTIRIDQSILTGES 307
+ +R + ++V A E+ GDIV V G+ IPAD +I+ + S +D+S +TGES
Sbjct: 105 FARKLREPGA-AEEVPATELRKGDIVLVEAGEIIPADGEVIEGVAS----VDESAITGES 159
Query: 308 VSVIK 312
VI+
Sbjct: 160 APVIR 164
Score = 33.6 bits (78), Expect = 0.55
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 423 VALAVAAIPEGLPAVITTCLAL-------GTRRMAKKNAIVRSLPSVETLGCTSVICSDK 475
VAL V IP TT L G R+ + N I S +VE G + DK
Sbjct: 253 VALLVCLIP-------TTIGGLLSAIGIAGMDRVLQANVIATSGRAVEAAGDVDTLLLDK 305
Query: 476 TGTLT 480
TGT+T
Sbjct: 306 TGTIT 310
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 46.8 bits (111), Expect = 7e-05
Identities = 90/350 (25%), Positives = 134/350 (38%), Gaps = 79/350 (22%)
Query: 457 RSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIF-----DKIEGSDSSFLEF--EITG 509
R+L E LG + SDKTGTLT N+M I+ D + + + E+ G
Sbjct: 442 RALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDG 501
Query: 510 STYEP-----IGDVFLNGSKIKGADYET---LHELGTICIMCN-----------DSAIDF 550
P + L SK G D E +H+ CN D +
Sbjct: 502 KILRPKMKVKVDPQLLELSK-SGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKL 560
Query: 551 NEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVETKWKKEFTL-E 609
+++ GE+ + +V A F + + R I + E + L E
Sbjct: 561 MDYQ------GESPDEQALVYAAAAYGFMLIE----RTSGHIVIDIHGERQRFNVLGLHE 610
Query: 610 FSRDRKSMSSYCTPLKSSKLG--SSGPKLFVKGAPE---GVLERCTHARIGSQKFPLTAT 664
F DRK MS LG K+FVKGA V++R + + + AT
Sbjct: 611 FDSDRKRMSVI--------LGCPDKTVKVFVKGADTSMFSVIDRSLNMNV------IRAT 656
Query: 665 LKNRILDLTRQYGTGRDTLRCLGLATAD-NPLKPEDMNL---ADST----------KFAS 710
+ Y + LR L + + N + E + A ST K AS
Sbjct: 657 EAH-----LHTYSS--LGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVAS 709
Query: 711 -YEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 759
E NLT +G + D ++ V ++I R AGI+V V+TGD + TA +I
Sbjct: 710 NVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISI 759
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 42.6 bits (100), Expect = 3e-04
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 718 VGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 766
+G++ + DP +++ + AGI++ ++TGDN+ TA AI R +G+F
Sbjct: 86 LGLIALTDPLYPGAREALKELKEAGIKLAILTGDNRLTANAIARLLGLF 134
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 39.6 bits (93), Expect = 0.002
Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 726 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG-------VFTEEEDTTGK--- 775
P +V + + R +A G+++++++ ++ E + ++G VFT ++ K
Sbjct: 77 EPFPDVVELLRRLKAKGVKLVILSNGSREAVERLLEKLGLLDLFDAVFTSDDVGARKPDP 136
Query: 776 -SYSKA--EIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEG-RAIY 820
+Y + +G+ E++ DD+ + AA G + ++
Sbjct: 137 EAYERVLERLGLP----------PEEILFIDDSPEDLEAARAAGIKTVH 175
>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated.
Length = 479
Score = 32.9 bits (76), Expect = 0.91
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 726 PPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTE 768
P +EV D + RAAG ++++ T ++ A+A+ +G+F
Sbjct: 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDG 114
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 32.8 bits (75), Expect = 1.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 888 LTGGPDQVYLSGLPDSIYYLPTTVFATHHM 917
LTGG ++ L GL YY+PTT + M
Sbjct: 349 LTGG-ERNELGGLLGGGYYVPTTFKGGNKM 377
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 32.0 bits (73), Expect = 1.4
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 505 FEITG--STYEPIGDVFL-NGSKIKGADYETLHELGTICIMCNDSAIDFNEFKQAFEKVG 561
EI +T++ V +G + A + L G S ID+ E +G
Sbjct: 124 AEIVSTAATFDGASMVPAVSGEGLARAARKALEGAG-----LTPSDIDYVEAHGTGTPIG 178
Query: 562 EATETALIVLAEKLNPFNVS--KSGLGRREQAIAVRQDVETKW 602
+A E AL + + + VS G A + E
Sbjct: 179 DAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLL 221
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 30.8 bits (70), Expect = 1.6
Identities = 5/44 (11%), Positives = 18/44 (40%)
Query: 727 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 770
V +++ + GI++ + T ++ + +G+ +
Sbjct: 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFD 68
>gnl|CDD|219386 pfam07364, DUF1485, Protein of unknown function (DUF1485). This
family consists of several hypothetical bacterial
proteins of around 300 residues in length. Members of
this family all appear to be in the Phylum
Proteobacteria. The function of this family is unknown.
Length = 292
Score = 31.4 bits (72), Expect = 2.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 736 ARCRAAGIRVIVITGDNKATAEAICRRIG--VFTEEEDTTGKSYSKAE 781
A G V+V T + A AEA + ++ +D E
Sbjct: 238 ADVPEMGPSVLVYTDGDPAAAEAAADELAAELWARRDDFVFPFLPLDE 285
>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination,
and repair].
Length = 256
Score = 31.0 bits (71), Expect = 2.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 724 LDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 759
D R EV IAR R AG++ +V+ G + +
Sbjct: 15 FDEDRDEV---IARAREAGVKKMVVVGTDLEDFKRA 47
>gnl|CDD|240506 cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2. Spt5, an
eukaryotic ortholog of NusG, contains multiple KOW
motifs at its C-terminus. Spt5 is involved in
transcription elongation and termination. KOW domain is
known as an RNA-binding motif that is shared so far
among some families of ribosomal proteins, the essential
bacterial transcriptional elongation factor NusG, the
eukaryotic chromatin elongation factor Spt5, the higher
eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains
play critical roles in recruitment of multiple other
eukaryotic transcription elongation and RNA biogenesis
factors and additionally are involved in the binding of
the eukaryotic Spt5 proteins to RNA polymerases.
Length = 51
Score = 27.9 bits (63), Expect = 2.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 155 VPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILT 190
PGD VEV G+ L + +D I+T
Sbjct: 2 QPGDNVEVIEGE-------LKGLQGKVESVDGDIVT 30
Score = 27.9 bits (63), Expect = 2.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 269 VPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILT 304
PGD VEV G+ L + +D I+T
Sbjct: 2 QPGDNVEVIEGE-------LKGLQGKVESVDGDIVT 30
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 29.9 bits (67), Expect = 2.9
Identities = 6/61 (9%), Positives = 22/61 (36%)
Query: 714 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTT 773
+ + ++ L R+ ++ V++++G + + + +G+ T
Sbjct: 13 DTALLLLLEALAEDRRLGLLGLSDAEELLELVVIVSGSPEPLVRPVAKALGIDDVNVVGT 72
Query: 774 G 774
Sbjct: 73 E 73
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 30.0 bits (68), Expect = 4.0
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 723 MLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
L P +E+ I+ + GI ++++G E + ++G+
Sbjct: 73 ALRPGAREL---ISWLKERGIDTVIVSGGFDFFVEPVAEKLGI 112
>gnl|CDD|221719 pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This
family includes both TraG and TraD as well as VirD4
proteins. TraG is essential for DNA transfer in
bacterial conjugation. These proteins are thought to
mediate interactions between the DNA-processing (Dtr)
and the mating pair formation (Mpf) systems. This domain
interacts with the relaxosome component TraM via the
latter's tetramerisation domain. TraD is a hexameric
ring ATPase that forms the cytoplasmic face of the
conjugative pore.
Length = 126
Score = 29.1 bits (66), Expect = 4.1
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 34/119 (28%)
Query: 720 VVGMLD-----PPRKEVFDSIARCRAAGIRVIVIT----------GDNKA---------- 754
V+ +LD ++ ++++ R+ GI +++I G + A
Sbjct: 2 VLFLLDEFANLGKIPDLEEALSTGRSRGISLVLILQSLAQLEELYGKDGAETILGNCDVK 61
Query: 755 ---------TAEAICRRIGVFTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADD 804
TAE I + +G T E T S + G + ++ + ++ D+
Sbjct: 62 IFLGGNDPETAEYISKLLGKTTVEVKTRSSSSGGSGSGSSSSRSSSESLEGRPLLTPDE 120
>gnl|CDD|234176 TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of
sequences are the closest homologs to the PhnX enzyme,
phosphonoacetaldehyde (Pald) hydrolase (phosphonatase,
TIGR01422). This phosphonatase-like enzyme and PhnX
itself are members of the haloacid dehalogenase (HAD)
superfamily (pfam00702) having a a number of distinctive
features that set them apart from typical HAD enzymes.
The typical HAD N-terminal motif DxDx(T/V) here is DxAGT
and the usual conserved lysine prior to the C-terminal
motif is instead an arginine. Also distinctive of
phosphonatase, and particular to its bi-catalytic
mechanism is a conserved lysine in the variable "cap"
domain. This lysine forms a Schiff base with the
aldehyde of phosphonoacetaldehyde, providing, through
the resulting positive charge, a polarization of the C-P
bond necesary for cleavage as well as a route to the
initial product of cleavage, an ene-amine. The
conservation of these elements in this
phosphonatase-like enzyme suggests that the substrate is
also, like Pald, a 2-oxo-ethylphosphonate. Despite this,
the genomic context of members of this family are quite
distinct from PhnX, which is almost invariably
associated with the 2-aminoethylphosphonate transaminase
PhnW (TIGR02326), the source of the substrate Pald.
Members of this clade are never associated with PhnW,
but rather associate with families of FAD-dependent
oxidoreductases related to deaminating amino acid
oxidases (pfam01266) as well as zinc-dependent
dehydrogenases (pfam00107). Notably, family members from
Arthrobacter aurescens TC1 and Nocardia farcinica IFM
10152 are adjacent to the PhnCDE ABC cassette
phosphonates transporter (GenProp0236) typically found
in association with the phosphonates C-P lyase system
(GenProp0232). These observations suggest two
possibilities. First, the substrate for this enzyme
family is also Pald, the non-association with PhnW not
withstanding. Alternatively, the substrate is something
very closely related such as
hydroxyphosphonoacetaldehyde (Hpald). Hpald could come
from oxidative deamination of
1-hydroxy-2-aminoethylphosphonate (HAEP) by the
associated oxidase. HAEP would not be a substrate for
PhnW due to its high specificity for AEP. HAEP has been
shown to be a constituent of the sphingophosphonolipid
of Bacteriovorax stolpii, and presumably has other
natural sources. If Hpald is the substrate, the product
would be glycoaldehyde (hydroxyacetaldehyde), and the
associated alcohol dehydrogenase may serve to convert
this to glycol.
Length = 220
Score = 30.2 bits (68), Expect = 4.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 733 DSIARCRAAGIRVIVITGDNKATAEAICRRIG 764
++ R++GI+V + TG ++ TAE + ++G
Sbjct: 94 EAFRSLRSSGIKVALTTGFDRDTAERLLEKLG 125
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 30.6 bits (70), Expect = 5.1
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 721 VGMLDPP-RKEVFDSIARCRA-AGIRVIVITGDNKATAEAICRRIGVF 766
V LD + +V + + + G+ + I+ D A I R+ V
Sbjct: 457 VSALDVSVQAQVLNLLKDLQEELGLTYLFISHD-LAVVRYIADRVAVM 503
>gnl|CDD|172492 PRK13990, PRK13990, cell division topological specificity factor
MinE; Provisional.
Length = 90
Score = 28.2 bits (62), Expect = 5.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 651 HARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFAS 710
H R L A LK+ I+++ ++Y +A ++ ++ D+ + DS+K ++
Sbjct: 34 HPRSSKISSHLLAELKDEIIEVVKKY-----------VALSEENIRDIDLKVEDSSKNST 82
Query: 711 YEVNLTF 717
EVN+ F
Sbjct: 83 IEVNIPF 89
>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 342
Score = 30.3 bits (68), Expect = 5.4
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 309 SVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAIG------KIRTEM 362
+VI+ + DP A N K I S + V G R I N AI R ++
Sbjct: 170 NVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQI 229
Query: 363 SETEEIKTPLQQKLD---EFGEQLSKVISIICVAVWAINIGHFN 403
+ EE K PL++ L +F +L + I+ V + +N+G N
Sbjct: 230 MDIEE-KFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGREN 272
>gnl|CDD|238500 cd01018, ZntC, Metal binding protein ZntC. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and bind their specific ligands in
the cleft between these domains. In addition, many of
these proteins possess a metal-binding histidine-rich
motif (repetitive HDH sequence).
Length = 266
Score = 30.0 bits (68), Expect = 5.5
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 729 KEVFDSIARCRAAGIRVIVI-TGDNKATAEAICRRIGVFTEEEDTTGKSYSKAEIGIA 785
K + D + G+RV+ + + +AEAI R IG D + + + +A
Sbjct: 207 KRLIDL---AKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENLLKVA 261
>gnl|CDD|225523 COG2976, COG2976, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 207
Score = 29.7 bits (67), Expect = 5.5
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 85 EEHEDFNSTLTSFVE---PFVILLILIANAIVG--VWQERNAESAIEALKEYE 132
EE + + + E ++ +IL + G WQ E A EA +Y+
Sbjct: 6 EEQQQLEAIKDWWKENGKALIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQ 58
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 29.6 bits (67), Expect = 5.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 720 VVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
V + +A +AAG +V++I+G E I R+G+
Sbjct: 71 VREEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGI 116
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 29.9 bits (68), Expect = 6.3
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 746 IVITGDNKATA-EAICRRIGVFTEEEDTTGKSY------SKAEIGIAMGSGTAVAKSASE 798
I+ G +K TA +A+ + +G+ EE G A +G+AMG+ + K+A++
Sbjct: 180 IMPKGVSKGTALKALAKHLGIDLEEVIAFGDGENDIEMLELAGLGVAMGNASPEVKAAAD 239
Query: 799 MVLADDNFSSI 809
V +N +
Sbjct: 240 YVTGSNNEDGV 250
>gnl|CDD|200456 cd11317, AmyAc_bac_euk_AmyA, Alpha amylase catalytic domain found
in bacterial and eukaryotic Alpha amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes AmyA proteins from bacteria, fungi, mammals,
insects, mollusks, and nematodes. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 329
Score = 29.8 bits (68), Expect = 6.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 728 RKEVFDSIARCRAAGIRVIV 747
E D + RC AAG+RV V
Sbjct: 65 EAEFRDMVNRCNAAGVRVYV 84
>gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase.
Length = 442
Score = 30.2 bits (68), Expect = 6.4
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 645 VLER-CTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDM 700
L R C A +G PLT K TR + RDT+RC+ +A NP KP +
Sbjct: 285 ALNRFCVQAAVGH---PLTVYGKG---GQTRGFLDIRDTVRCIEIAI-ANPAKPGEF 334
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 30.0 bits (68), Expect = 6.5
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 724 LDPP-RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
LDP R+E+++ + G I+++ AE +C R+ +
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVII 209
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 30.1 bits (68), Expect = 6.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 537 GTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKL-NPFNVSKSGLGR--REQAIA 593
GT+ I+C D + E Q AT A+ VL +L NPF G GR R+
Sbjct: 97 GTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPF-----GYGRIVRDADGR 151
Query: 594 VRQDVETK 601
V + VE K
Sbjct: 152 VLRIVEEK 159
>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase. This model represents
the reductase which acts reduces the geranylgeranyl
group to the phytyl group in the side chain of
chlorophyll. It is unclear whether the enzyme has a
preference for acting before or after the attachment of
the side chain to chlorophyllide a by chlorophyll
synthase. This clade is restricted to plants and
cyanobacteria to separate it from the homologues which
act in the biosynthesis of bacteriochlorophyll
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 398
Score = 29.9 bits (67), Expect = 7.2
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 721 VGMLDPPRKEVFDSIARCRAAGIRVIVITG-----DNKATAEAICRRIGVFTEEEDTTGK 775
+GML R+EV DS R RAA +I G A A+ + D+ G
Sbjct: 87 IGML---RREVLDSFLRRRAADAGATLINGLVTKLSLPADAD---DPYTLHYISSDSGGP 140
Query: 776 SYSKA--EIGIAMGSGTAVAKSASEMVLADDN----FSSIVAAVEEGRAIYNNMKQ 825
S ++ E+ +G+ A ++ A E+ D + F + +E A Y+++ +
Sbjct: 141 SGTRCTLEVDAVIGADGANSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAE 196
>gnl|CDD|225396 COG2840, COG2840, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 184
Score = 29.2 bits (66), Expect = 7.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 728 RKEVFDSIARCRAAGIR-VIVITG 750
R+E+ IAR RA G+R V+VI G
Sbjct: 110 RQELGAFIARARAEGLRCVLVIHG 133
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 29.9 bits (67), Expect = 7.6
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 93 TLTSFVEPFVILLILIANAIVGVWQERNAE---------SAIEALKEYEPEMGKVIRGDK 143
+L FV FV LL+L+ N + + Q+ + E + I +E EM + + +
Sbjct: 377 SLMYFVTAFVALLVLVNNQKIDLEQKNDDEELYICLLDPTKIVNSQESPQEMVQRQQEQE 436
Query: 144 SGVQKVRAK 152
+++ +
Sbjct: 437 QALKESIKQ 445
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 30.0 bits (68), Expect = 7.8
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 124 AIEALKEYEPEMGK---------VIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 174
A + L +E E G+ ++ D ++K RA E+ GD V V G + +
Sbjct: 992 APDHLIRFETERGRSLTVTPDHAMLVWDGGYLEKKRAFEVKEGDAVPVPEGVEETGVVLA 1051
Query: 175 IKIYS 179
++ S
Sbjct: 1052 DEVVS 1056
Score = 30.0 bits (68), Expect = 7.8
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 238 AIEALKEYEPEMGK---------VIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
A + L +E E G+ ++ D ++K RA E+ GD V V G + +
Sbjct: 992 APDHLIRFETERGRSLTVTPDHAMLVWDGGYLEKKRAFEVKEGDAVPVPEGVEETGVVLA 1051
Query: 289 IKIYS 293
++ S
Sbjct: 1052 DEVVS 1056
>gnl|CDD|233627 TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP
protein Csm5. CRISPR is a term for Clustered Regularly
Interspaced Short Palidromic Repeats. A number of
protein families appear only in association with these
repeats and are designated Cas (CRISPR associated)
proteins. Members of this cas gene family are found in
the mtube subtype of CRISPR/cas locus and designated
Csm5, for CRISPR/cas Subtype Mtube, protein 5 [Mobile
and extrachromosomal element functions, Other].
Length = 365
Score = 29.7 bits (67), Expect = 8.6
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 18/145 (12%)
Query: 478 TLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDV---------FLNGSKIKGA 528
L T+++ V R+ + + E G+T+ +V L+ K A
Sbjct: 188 PLRTDRLIVHRIKLNYNGRPGIPLYAECLDPGTTFS--FNVKIDREELKRGLDRKKQFYA 245
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKS----- 583
E ++L + I CN +F EF A K +A E + + N +
Sbjct: 246 PSEGENKLEILKIACNHFKEEFLEFVLA--KSNKAYEEFRKLEKKLNNDNGDLEILHIGW 303
Query: 584 GLGRREQAIAVRQDVETKWKKEFTL 608
G G R + I + D E +F
Sbjct: 304 GGGLRSKTIGILLDDEDGKDAQFRK 328
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,016,590
Number of extensions: 4975733
Number of successful extensions: 5616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5462
Number of HSP's successfully gapped: 144
Length of query: 962
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 856
Effective length of database: 6,236,078
Effective search space: 5338082768
Effective search space used: 5338082768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.5 bits)