RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy886
(962 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 882 bits (2282), Expect = 0.0
Identities = 442/688 (64%), Positives = 504/688 (73%), Gaps = 68/688 (9%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
Q ERNAE+AIEALKEYEPEMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR+
Sbjct: 108 WQ-ERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRI 166
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
+ I STT+R+DQSILTGESVSVIKHT+ VPDPRAVNQDKKN+LFSGTN+AAGKA GIV
Sbjct: 167 LSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVAT 226
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG++T IGKIR +M+ TE+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGHFNDP HG
Sbjct: 227 TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHG 286
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
GSWI+GA+YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT
Sbjct: 287 GSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 346
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
SVICSDKTGTLTTNQMSV +MFI DK++G S EF ITGSTY P G+V N I+
Sbjct: 347 SVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSG 406
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRR 588
++ L EL TIC +CNDS++DFNE K +EKVGEATETAL L EK+N FN L +
Sbjct: 407 QFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV 466
Query: 589 EQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLER 648
E+A A + KKEFTLEFSRDRKSMS YC+P S + G K+FVKGAPEGV++R
Sbjct: 467 ERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSP-AKSSRAAVGNKMFVKGAPEGVIDR 525
Query: 649 CTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKF 708
C + R+G+ + P+T +K +IL + +++GTGRDTLRCL LAT D P K E+M L DS++F
Sbjct: 526 CNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRF 585
Query: 709 ASYEVNLTFVGVVGMLDPPRKEVFDSIAR----------------------CRAAGI--- 743
YE +LTFVGVVGMLDPPRKEV SI CR GI
Sbjct: 586 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 645
Query: 744 ----RVIVITG------DNKATAEAICRRIGVF--TEEEDT----------------TG- 774
TG EA RR F E TG
Sbjct: 646 NEEVADRAYTGREFDDLPLAEQREAC-RRACCFARVEPSHKSKIVEYLQSYDEITAMTGD 704
Query: 775 --------KSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQF 826
K KAEIGIAMGSGTAVAK+ASEMVLADDNFS+IVAAVEEGRAIYNNMKQF
Sbjct: 705 GVNDAPALK---KAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQF 761
Query: 827 IRYLISSNIGEVVSIFLTAALGLPEALI 854
IRYLISSN+GEVV IFLTAALGLPEALI
Sbjct: 762 IRYLISSNVGEVVCIFLTAALGLPEALI 789
Score = 197 bits (502), Expect = 5e-52
Identities = 100/129 (77%), Positives = 117/129 (90%), Gaps = 3/129 (2%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
VLA FEE E+ T+T+FVEPFVILLILIANAIVGVWQERNAE+AIEALKEYEPEMGKV
Sbjct: 75 VLAWFEEGEE---TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY 131
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGESVSVIKH
Sbjct: 132 RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKH 191
Query: 200 TDAVPDPRA 208
T+ VPDPRA
Sbjct: 192 TEPVPDPRA 200
Score = 49.9 bits (120), Expect = 4e-06
Identities = 29/44 (65%), Positives = 31/44 (70%)
Query: 914 THHMSCLGGGDEFKGLDCHIFHDPHPMTMALSVLVTIEMLNAMN 957
TH M C F+GLDC IF P PMTMALSVLVTIEM NA+N
Sbjct: 872 THFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALN 915
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 568 bits (1467), Expect = 0.0
Identities = 159/561 (28%), Positives = 262/561 (46%), Gaps = 60/561 (10%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
Q E + + I + K P+ VIR ++ A ++V GD+VE+ GD++PADIR+
Sbjct: 159 YQ-EFKSTNIIASFKNLVPQQATVIRDGD--KFQINADQLVVGDLVEMKGGDRVPADIRI 215
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
++ + ++D S LTGES + + + + +NI F T G A+G+V+
Sbjct: 216 LQ--AQGRKVDNSSLTGESEPQTRSPECTHE---SPLETRNIAFFSTMCLEGTAQGLVVN 270
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG T IG+I + S E KTP+ +++ F + ++ + + + + + G
Sbjct: 271 TGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAM------CIG 324
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
++++ V+ +A+ VA +PEGL A +T CL+L +R+A KN +V++L +VETLG T
Sbjct: 325 YTFLRAMVF----FMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGST 380
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
SVICSDKTGTLT N+M+VS ++ + I + + +
Sbjct: 381 SVICSDKTGTLTQNRMTVSHLWFDNHI---------HSADTTEDQSGQTFDQSS------ 425
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEK---VGEATETALIVLAEKLNPFNVSKSGL 585
ET L + +CN +A + K +G+A+ETAL+ +E
Sbjct: 426 --ETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSEL----------- 472
Query: 586 GRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGV 645
+ ++ K + F+ K S L +KGAPE V
Sbjct: 473 -----TLGNAMGYRERFPKVCEIPFNSTNKFQLSIH---TLEDPRDPRHVLVMKGAPERV 524
Query: 646 LERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADS 705
LERC+ I Q+ PL + G R LG K A
Sbjct: 525 LERCSSILIKGQELPLDEQWREAFQTAYLSL--GGLGERVLGFCQLYLSEKDYPPGYAFD 582
Query: 706 TKFASY-EVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 764
+ ++ L+F G+V M+DPPR V D++ +CR AGIRVI++TGD+ TA+AI +G
Sbjct: 583 VEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVG 642
Query: 765 VFTEEEDTTGKSYSKAEIGIA 785
+ +E +T ++ + +
Sbjct: 643 IISEGSETVEDIAARLRVPVD 663
Score = 145 bits (367), Expect = 2e-35
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
+ + E +T + ++ +++ G +QE + + I + K P+ VI
Sbjct: 123 IAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVI 182
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R ++ A ++V GD+VE+ GD++PADIR+++ + ++D S LTGES +
Sbjct: 183 RDGD--KFQINADQLVVGDLVEMKGGDRVPADIRILQ--AQGRKVDNSSLTGESEPQTRS 238
Query: 200 TDAVPD 205
+ +
Sbjct: 239 PECTHE 244
Score = 143 bits (364), Expect = 4e-35
Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 32/216 (14%)
Query: 779 KAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGE 837
KA+IG+AMG +G+ AK+A++M+L DDNF+SIV VE+GR I++N+K+ I Y ++ NI E
Sbjct: 737 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPE 796
Query: 838 VVSIFLTAALGLPEALI-----------------------KKISTTNRGKKKKLSYNFLD 874
+ + + +P L + + + ++
Sbjct: 797 LTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 856
Query: 875 ISLLGPAIHYQ-VDLTGGPDQVYLSGL------PDSIYYLPTTVFATHHMSCLGGGDEFK 927
L + + Y + + P L H +
Sbjct: 857 EPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEW 916
Query: 928 GLDCHIFHDPHPMTMALSVLVTIEMLNAMN-RYGRH 962
++ T+ + ++ + + + R
Sbjct: 917 TFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRRL 952
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 532 bits (1374), Expect = e-174
Identities = 163/560 (29%), Positives = 266/560 (47%), Gaps = 60/560 (10%)
Query: 229 VQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRL 288
Q E + +++ K P+ VIR + + A+ +V GD+VEV GD+IPAD+R+
Sbjct: 154 YQ-EAKSSRIMDSFKNMVPQQALVIRDGE--KSTINAEFVVAGDLVEVKGGDRIPADLRI 210
Query: 289 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMG 348
I + ++D S LTGES + + + + +NI F TN G ARG+V+
Sbjct: 211 IS--AHGCKVDNSSLTGESEPQTRSPEFSSENPL---ETRNIAFFSTNCVEGTARGVVVY 265
Query: 349 TGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHG 408
TG T +G+I T S E +TP+ +++ F ++ V + V+ + +++ G
Sbjct: 266 TGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSL------ILG 319
Query: 409 GSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCT 468
SW++ + + VA +PEGL A +T CL L +RMA+KN +V++L +VETLG T
Sbjct: 320 YSWLEA----VIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGST 375
Query: 469 SVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGA 528
S ICSDKTGTLT N+M+V+ M+ ++I E + +
Sbjct: 376 STICSDKTGTLTQNRMTVAHMWFDNQI---------HEADTTENQSGAAFDKTS------ 420
Query: 529 DYETLHELGTICIMCNDSAIDFNEFKQAFEK---VGEATETALIVLAEKLNPFNVSKSGL 585
T L I +CN + + K G+A+E+AL+ E
Sbjct: 421 --ATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIEL----------- 467
Query: 586 GRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGV 645
Q + + K + F+ K S ++ K S L +KGAPE +
Sbjct: 468 -----CCGSVQGMRDRNPKIVEIPFNSTNKYQLSIH---ENEKSSESRYLLVMKGAPERI 519
Query: 646 LERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLA-D 704
L+RC+ + + PL +K + + G R LG P + D
Sbjct: 520 LDRCSTILLNGAEEPLKEDMKEAFQNAYLEL--GGLGERVLGFCHFALPEDKYNEGYPFD 577
Query: 705 STKFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 764
+ + +L FVG++ M+DPPR V D++ +CR+AGI+VI++TGD+ TA+AI + +G
Sbjct: 578 ADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG 637
Query: 765 VFTEEEDTTGKSYSKAEIGI 784
+ +E +T ++ I I
Sbjct: 638 IISEGNETIEDIAARLNIPI 657
Score = 135 bits (341), Expect = 2e-32
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 80 VLALFEEHEDFNSTLTSFVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVI 139
+ + + + V+ ++I +QE + +++ K P+ VI
Sbjct: 118 LAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVI 177
Query: 140 RGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKH 199
R + + A+ +V GD+VEV GD+IPAD+R+I + ++D S LTGES +
Sbjct: 178 RDGE--KSTINAEFVVAGDLVEVKGGDRIPADLRIIS--AHGCKVDNSSLTGESEPQTRS 233
Query: 200 TDAVPDPRAE 209
+ + E
Sbjct: 234 PEFSSENPLE 243
Score = 134 bits (339), Expect = 4e-32
Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 779 KAEIGIAMG-SGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGE 837
KA+IG+AMG SG+ V+K A++M+L DDNF+SIV VEEGR I++N+K+ I Y ++SNI E
Sbjct: 732 KADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPE 791
Query: 838 VVSIFLTAALGLPEAL 853
+ + +P L
Sbjct: 792 ITPFLVFIIGNVPLPL 807
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 417 bits (1075), Expect = e-131
Identities = 139/683 (20%), Positives = 248/683 (36%), Gaps = 190/683 (27%)
Query: 227 RMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADI 286
VQ E A S ++ LK+ V+R ++++ A E+VPGDI++V G IPAD
Sbjct: 158 GFVQ-EFQAGSIVDELKKTLALKAVVLRDGT--LKEIEAPEVVPGDILQVEEGTIIPADG 214
Query: 287 RLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIV 346
R++ + +++DQS LTGES++V KH + +F+ + V G+A ++
Sbjct: 215 RIVTDDAF-LQVDQSALTGESLAVDKHKG-------------DQVFASSAVKRGEAFVVI 260
Query: 347 MGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPA 406
TG NT +G+ ++ + L+ G L ++ + VW +
Sbjct: 261 TATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSF------Y 314
Query: 407 HGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLG 466
++ + +A+ + +P GLPAV+TT +A+G +AKK AIV+ L ++E+L
Sbjct: 315 RSNPIVQI----LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLA 370
Query: 467 CTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIK 526
++CSDKTGTLT N++S+ +
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYTVA--------------------------------- 397
Query: 527 GADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLG 586
G D E L + K +K +A + A + +
Sbjct: 398 GVDPEDLMLTACLA----------ASRK---KKGIDAIDKAFLKSLKYYPRA-------- 436
Query: 587 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVL 646
+ V +K+K F K + + + VKGAP VL
Sbjct: 437 ---------KSVLSKYKVLQFHPFDPVSKKVVAVV------ESPQGERITCVKGAPLFVL 481
Query: 647 ERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADST 706
+ P+ + + ++ R LG+A
Sbjct: 482 KTVEEDH------PIPEEVDQAYKNKVAEFA--TRGFRSLGVARKRG------------- 520
Query: 707 KFASYEVNLTFVGVVGMLDPPRKEVFDS--------------------IAR--CRAAGI- 743
E + +G++ +DPPR + + + IAR R G+
Sbjct: 521 -----EGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLG 575
Query: 744 ------RVIVITGDNKATAEAICRRIGVFTEEEDTTG--------K-------------- 775
+ + G + + E G K
Sbjct: 576 TNIYNAERLGLGGGGDMPGSEVYDFV------EAADGFAEVFPQHKYNVVEILQQRGYLV 629
Query: 776 -----------SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMK 824
S KA+ GIA+ + A+SA+++V +I+ A++ R I++ M
Sbjct: 630 AMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMY 689
Query: 825 QFIRYLISSNIGEVVSIFLTAAL 847
++ Y I+ +I + + L A+
Sbjct: 690 AYVVYRIALSIHLEIFLGLWIAI 712
Score = 118 bits (297), Expect = 3e-27
Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 97 FVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVP 156
+V+ VI +L+ NA+VG QE A S ++ LK+ V+R ++++ A E+VP
Sbjct: 141 WVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGT--LKEIEAPEVVP 198
Query: 157 GDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 201
GDI++V G IPAD R++ + +++DQS LTGES++V KH
Sbjct: 199 GDILQVEEGTIIPADGRIVTDDA-FLQVDQSALTGESLAVDKHKG 242
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 391 bits (1006), Expect = e-122
Identities = 126/546 (23%), Positives = 213/546 (39%), Gaps = 121/546 (22%)
Query: 227 RMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADI 286
++ E NA +A AL KV+R K + A +VPGDIV + +GD IPAD
Sbjct: 110 SFIE-ENNAGNAAAALMAGLAPKTKVLRDGK--WSEQEAAILVPGDIVSIKLGDIIPADA 166
Query: 287 RLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIV 346
RL++ +++DQS LTGES+ V KH +FSG+ G+ +V
Sbjct: 167 RLLE--GDPLKVDQSALTGESLPVTKHPG-------------QEVFSGSTCKQGEIEAVV 211
Query: 347 MGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPA 406
+ TG++T GK + T + Q+ L G I+I V + +
Sbjct: 212 IATGVHTFFGKAAHLVDSTNQ-VGHFQKVLTAIGNFCICSIAIGMVIEIIV-MYPI---- 265
Query: 407 HGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLG 466
+ G + L + IP +P V++ +A+G+ R++++ AI + + ++E +
Sbjct: 266 QRRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 321
Query: 467 CTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIK 526
V+CSDKTGTLT N++SV + + +G + V L +
Sbjct: 322 GMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKD---------------QVLLFAA--- 363
Query: 527 GADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLG 586
M + + +A + A++ +
Sbjct: 364 ---------------MASR------------VENQDAIDAAMVGMLAD------------ 384
Query: 587 RREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVL 646
++ ++ L F+ K + GS KGAPE +L
Sbjct: 385 --------PKEARAGIREVHFLPFNPVDKRTALTY------IDGSGNWHRVSKGAPEQIL 430
Query: 647 ERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADST 706
E + L ++L + +Y LR L +A P K ++
Sbjct: 431 ELA----------KASNDLSKKVLSIIDKY--AERGLRSLAVARQVVPEKTKE------- 471
Query: 707 KFASYEVNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 766
S FVG++ + DPPR + ++I R G+ V +ITGD A + RR+G+
Sbjct: 472 ---SPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMG 528
Query: 767 TEEEDT 772
T +
Sbjct: 529 TNMYPS 534
Score = 119 bits (300), Expect = 1e-27
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 97 FVEPFVILLILIANAIVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVP 156
+ + I+ +L+ N+ + +E NA +A AL KV+R K + A +VP
Sbjct: 93 WQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGK--WSEQEAAILVP 150
Query: 157 GDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 201
GDIV + +GD IPAD RL++ +++DQS LTGES+ V KH
Sbjct: 151 GDIVSIKLGDIIPADARLLE--GDPLKVDQSALTGESLPVTKHPG 193
Score = 118 bits (297), Expect = 3e-27
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 779 KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEV 838
KA+IGIA+ T A+ AS++VL + S I++AV RAI+ MK + Y +S I V
Sbjct: 598 KADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 657
Query: 839 VSIFLTAALGLP 850
L AL
Sbjct: 658 FGFML-IALIWE 668
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 107 bits (270), Expect = 3e-27
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 33/169 (19%)
Query: 560 VGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSS 619
+ +TA++ ++ + + + ++W+K + F +R+ MS
Sbjct: 32 LKNLLDTAVLEGTDEES------------------ARSLASRWQKIDEIPFDFERRRMSV 73
Query: 620 YCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTG 679
+ +L KGA + +L C+ R + PL + +I +T
Sbjct: 74 VV------AENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTL--N 125
Query: 680 RDTLRCLGLATADNPLKPEDMNLADSTKFASYEVNLTFVGVVGMLDPPR 728
R LR + +AT P + D AD E +L G + LD
Sbjct: 126 RQGLRVVAVATKYLPAREGDYQRAD-------ESDLILEGYIAFLDHHH 167
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 84.8 bits (211), Expect = 3e-18
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 34/139 (24%)
Query: 717 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG---VFTE---EE 770
GV+ + D R E ++I++ +A GI+ +++TGDN+ A+ + +G F E
Sbjct: 135 VSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPH- 193
Query: 771 DTTGKSY------------------------SKAEIGIAMGSGTAVAKSASEMVLADDNF 806
K+ ++A++GIA+G+GT VA +++VL ++
Sbjct: 194 ---EKAEKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIGAGTDVAVETADIVLVRNDP 250
Query: 807 SSIVAAVEEGRAIYNNMKQ 825
+ A VE R Y+
Sbjct: 251 RDVAAIVELSRKTYSKFHG 269
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 82.5 bits (205), Expect = 2e-17
Identities = 20/140 (14%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG---VFTE- 768
+N + + D PR + D + + + G+++I+++GD + + + + + ++
Sbjct: 123 INGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNL 182
Query: 769 -EED---------TTGKS-------------YSKAEIGIAMGSGTAVAKSASEMVLADDN 805
ED G + A++ +AMG+G ++K+ ++++L ++
Sbjct: 183 SPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMGNGVDISKNVADIILVSND 242
Query: 806 FSSIVAAVEEGRAIYNNMKQ 825
+++ ++ + + N +
Sbjct: 243 IGTLLGLIKNRKRLSNAIPS 262
Score = 29.0 bits (66), Expect = 7.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 448 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMF 490
+M K I+++ E + I +KTGTLT V++
Sbjct: 8 KMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI 50
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 79.9 bits (198), Expect = 2e-15
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 26/139 (18%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV--FTEEE 770
N G++ + D ++ ++ + GI+V +ITGDN +AEAI R + + E
Sbjct: 444 RNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV 503
Query: 771 DTTGKSY------------------------SKAEIGIAMGSGTAVAKSASEMVLADDNF 806
KS ++A++GIA+GSG+ VA + ++VL D+
Sbjct: 504 LPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDL 563
Query: 807 SSIVAAVEEGRAIYNNMKQ 825
+VAA++ R + +KQ
Sbjct: 564 RDVVAAIQLSRKTMSKIKQ 582
Score = 61.8 bits (151), Expect = 7e-10
Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 49/271 (18%)
Query: 237 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 296
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 122 EAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-- 177
Query: 297 RIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAIG 356
+D+S+++GE V V+K +N + T V G T +
Sbjct: 178 -VDESMISGEPVPVLKSKGDEVFGATINN-TGVLKIRATRV------------GGETLLA 223
Query: 357 KIRTEMSETEEIKTPLQQKLDEFGEQLSKV-------ISIICVAVWAINIGHFNDPAHGG 409
+I + + K P+Q+ D ++ ++I W I
Sbjct: 224 QIVKLVEDAMGSKPPIQRLAD----KVVAYFIPTVLLVAISAFIYWYF-IA-------HA 271
Query: 410 SWIKGAVYYFKIAVALAVAAIP--EGL--PAVITTCLALGTRRMAKKNAIVRSLPSVETL 465
++ F +A+ V A P GL P +T G + A+ ++++ ++E
Sbjct: 272 PL----LFAFTTLIAVLVVACPCAFGLATPTALTV----GMGKGAELGILIKNADALEVA 323
Query: 466 GCTSVICSDKTGTLTTNQMSVSRMFIFDKIE 496
+ + DKTGTLT + V+ + + E
Sbjct: 324 EKVTAVIFDKTGTLTKGKPEVTDLVPLNGDE 354
Score = 54.8 bits (133), Expect = 1e-07
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 102 VILLILIANAIVGVWQERNAES----AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPG 157
++ +L +G E A+S AI+ L + + VIR K V +E+ G
Sbjct: 102 LLAFLL-----LGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVG 154
Query: 158 DIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHT-DAV 203
DIV V G+KIP D +++ S +D+S+++GE V V+K D V
Sbjct: 155 DIVIVRPGEKIPVDGVVVEGESY---VDESMISGEPVPVLKSKGDEV 198
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 78.7 bits (195), Expect = 5e-15
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 27/140 (19%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV------- 765
V+ V ++ + DP + ++I + +GI ++++TGD+K TAEA+ +G+
Sbjct: 541 VDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEI 600
Query: 766 -------FTEEEDTTGKS-------------YSKAEIGIAMGSGTAVAKSASEMVLADDN 805
E G +KA+IGIAMG+GT VA ++ + L +
Sbjct: 601 MPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAIESAGVTLLHGD 660
Query: 806 FSSIVAAVEEGRAIYNNMKQ 825
I A + +N++Q
Sbjct: 661 LRGIAKARRLSESTMSNIRQ 680
Score = 59.1 bits (144), Expect = 5e-09
Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 55/259 (21%)
Query: 237 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 296
SAI AL + PE I+ D S ++V + GD++ V G+KIP D + + S
Sbjct: 214 SAIRALLKLVPESAHRIKEDGS-EEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-- 270
Query: 297 RIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAG----KARGIVMGTGLN 352
+D+S++TGE + V K K + T G KA + G +
Sbjct: 271 -VDESMVTGEPIPVAKEAS----------AK---VIGATINQTGSFVMKALHV----GSD 312
Query: 353 TAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKV-------ISIICVAVWAINIGHFNDP 405
T + +I +S+ + + P+Q+ D +S ++++ VWA+ +G
Sbjct: 313 TMLARIVQMVSDAQRSRAPIQRLAD----TVSGWFVPAVILVAVLSFIVWAL-LGPQPAL 367
Query: 406 AHGGSWIKGAVYYFKIAVALAVAAIP--EGL--PAVITTCLALGTRRMAKKNAIVRSLPS 461
++G AV++ + A P GL P I G + A+ ++++ +
Sbjct: 368 SYG----------LIAAVSVLIIACPCALGLATPMSIMV----GVGKGAQSGVLIKNAEA 413
Query: 462 VETLGCTSVICSDKTGTLT 480
+E + + + DKTGTLT
Sbjct: 414 LERMEKVNTLVVDKTGTLT 432
Score = 51.4 bits (124), Expect = 1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 123 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 182
SAI AL + PE I+ D S ++V + GD++ V G+KIP D + + S
Sbjct: 214 SAIRALLKLVPESAHRIKEDGS-EEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-- 270
Query: 183 RIDQSILTGESVSVIKHTDA 202
+D+S++TGE + V K A
Sbjct: 271 -VDESMVTGEPIPVAKEASA 289
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 74.1 bits (183), Expect = 2e-14
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 34/138 (24%)
Query: 717 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG---VFTE---EE 770
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + V E
Sbjct: 154 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPH- 212
Query: 771 DTTGKSY------------------------SKAEIGIAMGSGTAVAKSASEMVLADDNF 806
KS ++A++GIA+GSG+ VA + ++VL D+
Sbjct: 213 ---QKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDL 269
Query: 807 SSIVAAVEEGRAIYNNMK 824
+VAA++ R + +K
Sbjct: 270 RDVVAAIQLSRKTMSKIK 287
Score = 29.8 bits (68), Expect = 4.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 445 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSV 486
G+R+ A+ ++++ ++E + + DKTGTLT + V
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV 50
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 76.8 bits (190), Expect = 2e-14
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 26/135 (19%)
Query: 717 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG-------VFTEE 769
G++ + D ++ ++ + GI+V +ITGDN +AEAI R + V +
Sbjct: 526 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQ 585
Query: 770 EDTTGKSY-------------------SKAEIGIAMGSGTAVAKSASEMVLADDNFSSIV 810
+ K ++A++GIA+GSG+ VA + ++VL D+ +V
Sbjct: 586 KSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVV 645
Query: 811 AAVEEGRAIYNNMKQ 825
AA++ R + +KQ
Sbjct: 646 AAIQLSRKTMSKIKQ 660
Score = 63.7 bits (156), Expect = 2e-10
Identities = 64/272 (23%), Positives = 109/272 (40%), Gaps = 51/272 (18%)
Query: 237 SAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTI 296
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 200 EAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-- 255
Query: 297 RIDQSILTGESVSVIKHT-DAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAI 355
+D+S+++GE V V+K D V F T G + G T +
Sbjct: 256 -VDESMISGEPVPVLKSKGDEV--------------FGATINNTGVLKIRATRVGGETLL 300
Query: 356 GKIRTEMSETEEIKTPLQQKLDEFGEQLSKV-------ISIICVAVWAINIGHFNDPAHG 408
+I + + K P+Q+ D ++ ++I W I H
Sbjct: 301 AQIVKLVEDAMGSKPPIQRLAD----KVVAYFIPTVLLVAISAFIYWYF-IAHAP----- 350
Query: 409 GSWIKGAVYYFKIAVALAVAAIP--EGL--PAVITTCLALGTRRMAKKNAIVRSLPSVET 464
++ F +A+ V A P GL P +T G + A+ ++++ ++E
Sbjct: 351 ------LLFAFTTLIAVLVVACPCAFGLATPTALTV----GMGKGAELGILIKNADALEV 400
Query: 465 LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIE 496
+ + DKTGTLT + V+ + + E
Sbjct: 401 AEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDE 432
Score = 56.0 bits (136), Expect = 5e-08
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 102 VILLILIANAIVGVWQE----RNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPG 157
++ +L +G E AI+ L + + VIR K V +E+ G
Sbjct: 180 LLAFLL-----LGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVG 232
Query: 158 DIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHT-DAV 203
DIV V G+KIP D +++ S +D+S+++GE V V+K D V
Sbjct: 233 DIVIVRPGEKIPVDGVVVEGESY---VDESMISGEPVPVLKSKGDEV 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 4e-13
Identities = 75/591 (12%), Positives = 156/591 (26%), Gaps = 177/591 (29%)
Query: 462 VETLGCTSVICSDKT-GTLTTNQMSVSRMFIFDKIEGSDS----SFLEFEITGSTYEPIG 516
V+ C V D L+ + D I S + F S E +
Sbjct: 30 VDNFDCKDV--QDMPKSILSKEE--------IDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 517 DVFLNGSKIKGADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALIVLAEKLN 576
F+ +Y+ L I ++ + + +++ +
Sbjct: 80 QKFVEEVLRI--NYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQ--------VFA 127
Query: 577 PFNVSKSGLGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKL 636
+NVS R + + +RQ L + +
Sbjct: 128 KYNVS-----RLQPYLKLRQ--------------------------ALLELR---PAKNV 153
Query: 637 FVKGAPEG------VLERCTHARIGSQKFP-----LTATLKNRILDLTRQYGTGRDTLRC 685
+ G G L+ C ++ K L N + +
Sbjct: 154 LIDGVL-GSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 686 LGLATADN----PLKPEDMNLADSTKFAS--YEVNLTFVGVVGMLD----PPRKEVFDSI 735
+ +D+ L+ + S YE L +V L F+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LV--LLNVQNAKAWNAFN-- 263
Query: 736 ARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSKAE------IGIAMGSG 789
C+ +++ T + T + + + + + + +
Sbjct: 264 LSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 790 TAVAKSASEMVLADDNFSSIVAAVEEGRAIYNN------------MKQFIRYLISSNIGE 837
+ + L S I ++ +G A ++N ++ + L + +
Sbjct: 319 PREVLTTNPRRL-----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 838 V---VSIFL------TAALGL---------PEALIKKI---STTNR-GKKKKLSYNFLDI 875
+ +S+F T L L ++ K+ S + K+ +S + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 876 SLLGP-----AIH------YQVDLTGGPDQVYLSGLPDSIY---YLPTTVFATHHMSCLG 921
L A+H Y + D L Y ++ HH+ +
Sbjct: 434 ELKVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIG------HHLKNIE 485
Query: 922 GGDEFKG-----LDCH-----IFHDPHPMTMALSVLVTIEMLNAMNRYGRH 962
+ LD I HD + S+L L + Y +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQQLKFYKPY 533
Score = 57.6 bits (138), Expect = 2e-08
Identities = 78/542 (14%), Positives = 169/542 (31%), Gaps = 146/542 (26%)
Query: 115 VWQERNAESAIEALKEYEPEMGKVIRGDK-SG-----VQKVRAKEIV---PGDIVEVSVG 165
V + + +AL E P +I G SG + + ++ I +++
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 166 DKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKNGPQMCENDRNEHKC 225
+ + L + +ID + + S N + + E +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHS--------------SNIKLRIHSIQAELR- 235
Query: 226 GRMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPAD 285
R+++ + + V+ + V+ + + +S KI
Sbjct: 236 -RLLKSKPYENCLL------------VLL-N------VQNAKAW--NAFNLSC--KI--- 268
Query: 286 IRLIKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGI 345
L+ TT R + + S + H + D+ L K
Sbjct: 269 --LL----TT-R-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-------KY--- 310
Query: 346 VMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDP 405
L+ + E+ T P + + E + ++ W N H N
Sbjct: 311 -----LDCRPQDLPREVLTT----NPRRLSI--IAESIRDGLAT-----W-DNWKHVNCD 353
Query: 406 AHGGSWIKGAV----------YYFKIAVALAVAAIPEGL-----PAVITTCLALGTRRMA 450
+ I+ ++ + +++V A IP L VI + + + ++
Sbjct: 354 KL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 451 KKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFI--FDKIEGSDS-SFLEFEI 507
K + + + P T+ S+ K N+ ++ R + ++ + DS + +
Sbjct: 413 KYSLVEKQ-PKESTISIPSIYLELK--VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 508 TGSTYEPIG----------------DVFLN----GSKIKGADYETLHELGTICIMCNDSA 547
Y IG VFL+ KI+ + G+I ++
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST-AWNASGSI----LNTL 524
Query: 548 IDFNEFKQ-------AFEKVGEATETALIVLAEKL--NPF-NVSKSGLGRREQAI---AV 594
+K +E++ A L + E L + + ++ + L ++AI A
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 595 RQ 596
+Q
Sbjct: 585 KQ 586
Score = 42.1 bits (98), Expect = 0.001
Identities = 58/384 (15%), Positives = 110/384 (28%), Gaps = 114/384 (29%)
Query: 2 SFHQTKYLHGVDPLGLDTVGFHLRGTLGARLHITLGAFCRLRLRQIDFIPARVTSLSPSE 61
S Y+ D L D F A+ +++ RL+ + + L P++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVF-------AKYNVS-------RLQPYLKLRQALLELRPAK 151
Query: 62 NVHIASTNFAVLF--------CLCPQVLALFEEHEDFNS-----TLTSFVEPFVILLIL- 107
NV ++ + V ++ + L + P +L +L
Sbjct: 152 NV--------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 108 -IANAIVGVWQER---------NAESAIEALKEYEPEMGK-----VIRGDKSGVQKVRAK 152
+ I W R S L+ V+ + V+
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-N------VQNA 256
Query: 153 EIVPG-DI---VEVSVGDKIPADIRLIKIYSTTIRIDQSI--LT-GESVSVI-KHTDAVP 204
+ ++ + ++ K D L +T I +D LT E S++ K+ D P
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 205 D--PR-AEKNGPQMC---------ENDRNEHKCGRMV---QLERNAESAIEALKEYEPEM 249
PR P+ ++ + V +L ES++ L+ E
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAE--- 370
Query: 250 GKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVS 309
R + + P IP + L I+ I+ D ++ +
Sbjct: 371 ---YR------KMFDRLSVFPPSA-------HIPTIL-LSLIWFDVIKSDVMVVVNKLHK 413
Query: 310 VIKHTDAVPDPRAVNQDKKNILFS 333
V + K S
Sbjct: 414 ----------YSLVEKQPKESTIS 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 1e-12
Identities = 68/473 (14%), Positives = 130/473 (27%), Gaps = 161/473 (34%)
Query: 548 IDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVET---KWKK 604
+ + KVG+ + VL L F E D+ K +
Sbjct: 65 LGYVSSLVEPSKVGQFDQ----VLNLCLTEF----------ENCYLEGNDIHALAAKLLQ 110
Query: 605 EFTLEFSRDRKSMSSY---CTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARI----GSQ 657
E + ++ + +Y K S LF + EG +A++ G Q
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF-RAVGEG------NAQLVAIFGGQ 163
Query: 658 KFPLTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFASYEVNLTF 717
+ +L Y T + L + + L D+ K + +N
Sbjct: 164 GNTDD-YFE----ELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLN--- 214
Query: 718 VGVVGML-DP---PRKEVFDSIARCRAAGIRVIVITGDNKATA--EAICRRIGVFTEEED 771
++ L +P P K+ SI +I + A + +G
Sbjct: 215 --ILEWLENPSNTPDKDYLLSIP----ISCPLIGVI----QLAHYVVTAKLLG------- 257
Query: 772 TTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLI 831
++ E+ + T ++ +V A +A + + + ++++ I L
Sbjct: 258 -----FTPGELRSYLKGATGHSQG---LVTA-----VAIAETDSWESFFVSVRKAITVLF 304
Query: 832 SSNIG--------------EVVSIFLTAALGLP-----------EALIKKISTTNRGKKK 866
IG ++ L G+P E + ++ TN
Sbjct: 305 F--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH--- 359
Query: 867 KLSYNFLDISLLGPAIHYQVDLTGGPDQVYLSGLPDSIY--------------------- 905
L ++ L G + +SG P S+Y
Sbjct: 360 -----------LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 906 -----------YLPTTV-FATHHMS---------CLGGGDEFKGLDCHI--FH 935
+LP F +H + + F D I +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Score = 48.1 bits (114), Expect = 2e-05
Identities = 86/551 (15%), Positives = 154/551 (27%), Gaps = 209/551 (37%)
Query: 285 DI-----RLIKIYSTTIRIDQSILTG--ESVSVIKHTDAVPDPRAVNQDKKNILFSGTNV 337
DI +L++ TT+ + ++ + + K P + N + LF V
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----PFDKKSN----SALF--RAV 149
Query: 338 AAGKARGIVMGTGLNTAI----GKIRT---EMSETEEIKTPLQQKL-DEFGEQLSKVISI 389
G A+ ++ AI G E+ + + L L E LS++I
Sbjct: 150 GEGNAQ--LV------AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 390 ICVAVWAINIGHFNDPAHGGSWIKGA-----VYYFKIAVALAVAAIPEGLPAV------- 437
A F + W++ Y +IP P +
Sbjct: 202 TLDAE-----KVFTQGLNILEWLENPSNTPDKDYL--------LSIPISCPLIGVIQLAH 248
Query: 438 -ITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKIE 496
+ T LG + + ++ G + + V+ + I
Sbjct: 249 YVVTAKLLGFT-PGELRSYLKG-----ATGHSQGL--------------VTAVAI----A 284
Query: 497 GSDS--SFLE---------FEITG---------STYEP--IGDVFLNGSK-------IKG 527
+DS SF F I G ++ P + D N I
Sbjct: 285 ETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 528 ADYETLHELGTICIMCNDSAID-FNEFKQAFEKVGEATETALIVLAEKLN-P--FNVS-- 581
E + + ++ N A ++V E +L+ N VS
Sbjct: 344 LTQEQVQDY-----------VNKTNSHLPAGKQV----EISLV------NGAKNLVVSGP 382
Query: 582 -KS--GLGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYC-----TPLKSSKLGSSG 633
+S GL + ++ + + F +RK S +P S L
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLD-QSRIPF-----SERKLKFSNRFLPVASPFHSHLL---- 432
Query: 634 PKLFVKGAPEGVLERCTHARI---GSQ-KFPLTATLKNRILDLTRQYGTGRDTLRCLGLA 689
A + + + + + P+ T G D LR
Sbjct: 433 -----VPASDLINKDLVKNNVSFNAKDIQIPVYDT------------FDGSD-LR----- 469
Query: 690 TADNPLKPE--DMNLAD------STKFASYEVNLTF----VGVVGMLDPPRKEVFDSIAR 737
+ D + +T+F + + L F +G+L R
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDFGPGGASGLGVL----------THR 518
Query: 738 -CRAAGIRVIV 747
G+RVIV
Sbjct: 519 NKDGTGVRVIV 529
Score = 46.2 bits (109), Expect = 5e-05
Identities = 74/459 (16%), Positives = 136/459 (29%), Gaps = 133/459 (28%)
Query: 3 FHQTKYLHGVDPLGLDTVGFHLRGTLGARLHITLGAFCRLRLRQI-DFIPARVTSLSPSE 61
F YL G D H L A+L I ++I AR+ + P +
Sbjct: 91 FENC-YLEGND--------IH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 62 NVHI------ASTNFAVLFCLCP-Q--VLALFEEHEDFNSTLTSFVEPFVILLILIANAI 112
A L + Q FEE D T V +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI---------- 188
Query: 113 VGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKV---RAKEIVPGD----IVEVSVG 165
+ + E L E + G+ + P + +S
Sbjct: 189 ---------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC- 238
Query: 166 DKIPADIRLIKI--YSTTIRID-------QSILTGESVSVIKHTDAVPDPRAEKNGPQMC 216
P I +I++ Y T ++ +S L G + H+ + A
Sbjct: 239 ---PL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLVTAVA----IAET 286
Query: 217 ENDRNEHKCGRMVQLERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEV 276
++ + + AI L +G +R + +P I+E
Sbjct: 287 DSWES---------FFVSVRKAITVLF----FIG--VRC-----YEAYPNTSLPPSILED 326
Query: 277 SV--GDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDA-VPDPRAVNQDKKNI-LF 332
S+ + +P+ + I + Q + + T++ +P + V I L
Sbjct: 327 SLENNEGVPSPMLSIS------NLTQEQVQ----DYVNKTNSHLPAGKQV-----EISLV 371
Query: 333 SGTN--VAAGKARGIVMGTGLNTAIGKIRTEMSETEEIKTPLQQKLDEFGEQ-------- 382
+G V +G + + GLN + K + S ++ + P ++ +F +
Sbjct: 372 NGAKNLVVSGPPQSLY---GLNLTLRKAKAP-SGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 383 ----LSKVISIICVAVWAINIGHFNDPAHGGSWIKGAVY 417
L +I + N+ FN I+ VY
Sbjct: 428 HSHLLVPASDLINKDLVKNNV-SFN-----AKDIQIPVY 460
Score = 45.8 bits (108), Expect = 8e-05
Identities = 46/305 (15%), Positives = 85/305 (27%), Gaps = 111/305 (36%)
Query: 18 DTVGFHLRGTLGAR-LHITLGAFCRLRLRQIDFIPARVTSLSPSENVHIASTNFAVLFC- 75
+ H + T G L I + P +T E N++ +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINN------------PVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 76 ----LCPQVLALFEEHEDFNSTLTSFVEPFVILLILIAN---AIVGVWQERNAESAI-EA 127
+ +F+E + +ST +F LL A+ + E A E
Sbjct: 1695 TIVDGKLKTEKIFKE-INEHSTSYTFRSEKG-LLSATQFTQPALTLM------EKAAFED 1746
Query: 128 LKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIV-------E----VSVGDKIP-AD-IRL 174
LK +G ++P D E S+ D + + +
Sbjct: 1747 LKS---------KG------------LIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 175 IKIYSTTIRIDQSILTGESVSVIKHTDAVPDPRAEKNGPQMCENDRNEHKCGRMVQLERN 234
+ R G ++ AVP ++ M + GR+ +
Sbjct: 1786 VFY-----R-------GMTMQ-----VAVPRDELGRSNYGMIAINP-----GRVA-ASFS 1822
Query: 235 AESAIEALKEYEPEMGK--------------VIRGDKSGVQKV-------RAKEIVPGDI 273
E+ ++ G V GD + V + ++I DI
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI---DI 1879
Query: 274 VEVSV 278
+E+
Sbjct: 1880 IELQK 1884
Score = 43.1 bits (101), Expect = 5e-04
Identities = 50/299 (16%), Positives = 84/299 (28%), Gaps = 113/299 (37%)
Query: 655 GSQKFPLTATLKNRILDLTRQYGTGRD--------TLRCLGLATAD----NPLK------ 696
GSQ+ + +DL + +D G + D NP+
Sbjct: 1625 GSQE-------QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 697 ------------------PEDMNLADSTKFASYEVN-----LTFVGVVGMLDP-----P- 727
D L F E+N TF G+L P
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFK--EINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 728 ----RKEVFDSIARCRAAGIRVIVITGDNKATA-----E--AICRRIGVFTEEEDTT--- 773
K F+ + ++ G+ + A E A+ V + E
Sbjct: 1736 LTLMEKAAFEDL---KSKGLIP-----ADATFAGHSLGEYAALASLADVMSIE-SLVEVV 1786
Query: 774 ---GKSYSKA----EIGIAMGSGTAVAKSASEMVLADDNFSSIVAAV--EEGRAI----Y 820
G + A E+G + A+ + + +V V G + Y
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 821 N--NMKQFIRYLISSNIGEVVSIFLTAALGLPEALIKKISTTNRGKKKKLSYNFLDISL 877
N N Q Y+ + G++ AL + + + N K +K+ L SL
Sbjct: 1847 NVENQ-Q---YVAA---GDL------RAL---DTVTNVL---NFIKLQKIDIIELQKSL 1886
Score = 40.4 bits (94), Expect = 0.004
Identities = 51/322 (15%), Positives = 87/322 (27%), Gaps = 124/322 (38%)
Query: 132 EPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTG 191
E MG + S A+++ ++ AD Y +I I+
Sbjct: 1628 EQGMGMDLY-KTSKA----AQDVW----------NR--ADNHFKDTYGFSI---LDIVIN 1667
Query: 192 ESVSVIKHTDAVPDPRAEKNGPQMCENDRNEHKCGRMVQLERNAESAIEALKEY---EPE 248
V++ H R +N M E ++ E+ + E Y +
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIF----ETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 249 ---------------MGKVIRGDKSGVQKVRAKEIVPGDIV-------E----VSVGDKI 282
M K + +++K ++P D E S+ D +
Sbjct: 1724 GLLSATQFTQPALTLMEKAA------FEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 283 P-AD-IRLIKIYSTTIRIDQSILTGESVSVIKHTDAVP-DPR--------AVNQDKKNIL 331
+ ++ R G ++ AVP D A+N +
Sbjct: 1778 SIESLVEVVFY-----R-------GMTMQ-----VAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 332 FSGT--------------------N--------VAAGKARGI-VMGTGLNTA-IGKIRTE 361
FS N VAAG R + + LN + KI
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI- 1879
Query: 362 MSETEEIKTPLQQKLDEFGEQL 383
I+ L+E L
Sbjct: 1880 ------IELQKSLSLEEVEGHL 1895
Score = 30.8 bits (69), Expect = 2.8
Identities = 47/245 (19%), Positives = 73/245 (29%), Gaps = 102/245 (41%)
Query: 10 HGVDPLG---LDTV-------GFHLRGTLGARLHITLGAFC-------RLRLRQI-DFIP 51
H D G LD V H G G R+ A +L+ +I I
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 52 ARVTSLS-PSENVHIASTNFAVLFCLCPQV------LALFEE---------------H-- 87
TS + SE +++T F Q A FE+ H
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFT-------QPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 88 -EDFNSTLTSF--VEPF---VILL----ILIANA------------IVGVWQERNAES-A 124
E + L S V V ++ + + A ++ + R A S +
Sbjct: 1765 GE--YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 125 IEALKEYEPEMGK------------------VIRGDKSGVQKV-------RAKEIVPGDI 159
EAL+ +GK V GD + V + ++I DI
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI---DI 1879
Query: 160 VEVSV 164
+E+
Sbjct: 1880 IELQK 1884
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 54.4 bits (132), Expect = 3e-09
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 124 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIR 183
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 2 AIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY--- 56
Query: 184 IDQSILTGESVSVIKHT-DAV 203
+D+S+++GE V V+K D V
Sbjct: 57 VDESMISGEPVPVLKSKGDEV 77
Score = 54.4 bits (132), Expect = 3e-09
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 238 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIR 297
AI+ L + + VIR K V +E+ GDIV V G+KIP D +++ S
Sbjct: 2 AIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY--- 56
Query: 298 IDQSILTGESVSVIKHT-DAV 317
+D+S+++GE V V+K D V
Sbjct: 57 VDESMISGEPVPVLKSKGDEV 77
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative
splicing, ATP-binding, cell membrane, cytoplasm, disease
mutation; NMR {Homo sapiens}
Length = 124
Score = 54.8 bits (133), Expect = 3e-09
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 123 SAIEALKEYEPEMGKVIRGDKSGV----QKVRAKEIVPGDIVEVSVGDKIPADIRLIKIY 178
A+ L + ++ D + ++V + + GDI++V G K P D R+I+ +
Sbjct: 7 EALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGH 66
Query: 179 STTIRIDQSILTGESVSVIKHT-DAV 203
S +D+S++TGE++ V K V
Sbjct: 67 SM---VDESLITGEAMPVAKKPGSTV 89
Score = 54.8 bits (133), Expect = 3e-09
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 237 SAIEALKEYEPEMGKVIRGDKSGV----QKVRAKEIVPGDIVEVSVGDKIPADIRLIKIY 292
A+ L + ++ D + ++V + + GDI++V G K P D R+I+ +
Sbjct: 7 EALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGH 66
Query: 293 STTIRIDQSILTGESVSVIKHT-DAV 317
S +D+S++TGE++ V K V
Sbjct: 67 SM---VDESLITGEAMPVAKKPGSTV 89
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 36.2 bits (83), Expect = 0.049
Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 713 VNLT---FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAE---AICRRIGVF 766
+NLT F G+ + + R ++ ++TG + A ++ + +
Sbjct: 19 LNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDL 78
Query: 767 TEEE--DTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAV----EEGRAIY 820
+ + T G G + S + + S+ A V +
Sbjct: 79 SPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKL 138
Query: 821 NNMKQFIRYLISSNIGEVVSI 841
+ + + SI
Sbjct: 139 KELYDLMNQQAKPHDTSFRSI 159
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.19
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 17/46 (36%)
Query: 554 KQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVE 599
KQA +K+ + +L + A+ P A+A++ +E
Sbjct: 19 KQALKKL----QASLKLYADDSAP-------------ALAIKATME 47
Score = 31.8 bits (71), Expect = 0.44
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 20/49 (40%)
Query: 595 RQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPE 643
+Q + KK L+ S+ Y S P L +K E
Sbjct: 19 KQAL----KK---LQ-----ASLKLY-AD-------DSAPALAIKATME 47
Score = 31.8 bits (71), Expect = 0.52
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 118 ERNAESAIEA-LKEYEPE 134
E+ A ++A LK Y +
Sbjct: 18 EKQALKKLQASLKLYADD 35
Score = 31.8 bits (71), Expect = 0.52
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 232 ERNAESAIEA-LKEYEPE 248
E+ A ++A LK Y +
Sbjct: 18 EKQALKKLQASLKLYADD 35
Score = 31.1 bits (69), Expect = 1.0
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 26/52 (50%)
Query: 412 IKGAVYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVE 463
+K K+ +L + A + PA LA+ A ++E
Sbjct: 22 LK------KLQASLKLYA-DDSAPA-----LAI--------KA------TME 47
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 33.8 bits (78), Expect = 0.27
Identities = 28/145 (19%), Positives = 40/145 (27%), Gaps = 31/145 (21%)
Query: 714 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAE-------AICRRI--- 763
L + G + D + C G+ V+ G A AE A RRI
Sbjct: 71 KLKIISQTGRVSRDAGGHID-LEACTDKGVVVLEGKGSPVAPAELTWALVMAAQRRIPQY 129
Query: 764 ------GVFTEEEDTTGKSYSKAEIG----------IAMGS-GTAVAKSAS--EM-VLAD 803
G + + + IG G G VA M VL
Sbjct: 130 VASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW 189
Query: 804 DNFSSIVAAVEEGRAIYNNMKQFIR 828
+S A +G A+ +
Sbjct: 190 GRENSKERARADGFAVAESKDALFE 214
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 33.1 bits (76), Expect = 0.28
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 728 RKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
+ D + AAG ++T N I R GV
Sbjct: 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV 131
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 30.1 bits (68), Expect = 1.8
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 717 FVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 766
+ GV+ D ++ + +A + G+ ++++ D A R +
Sbjct: 9 YAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN 58
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 2.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 590 QAIAVRQDVET--KWKKEFTLEFS-RDRKS 616
QA + Q+ E+ KW++E D S
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAAS 105
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 29.9 bits (68), Expect = 3.5
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 723 MLDPP-RKEVFDSIARCRAAGIRVIVIT 749
LD + ++ + + + G VI+I+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILIS 195
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 29.6 bits (67), Expect = 4.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 740 AAGIRVIVITGDNK----ATAEAICRRIGV 765
++GI V ++TG NK A +CR
Sbjct: 1 SSGIHVALVTGGNKGIGLAIVRDLCRLFSG 30
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 30.0 bits (68), Expect = 4.1
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 13/39 (33%)
Query: 729 KEVFDSIAR----CRAAGIRVI---------VITGDNKA 754
K+V + IAR RAAGI +I VITG KA
Sbjct: 361 KKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA 399
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 29.9 bits (68), Expect = 4.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 13/39 (33%)
Query: 729 KEVFDSIAR----CRAAGIRVI---------VITGDNKA 754
K+V + IAR RAAGI ++ VITG KA
Sbjct: 315 KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA 353
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus
filamentous virus 1}
Length = 130
Score = 28.6 bits (63), Expect = 4.4
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 496 EGSDSSFLEFEITGSTYEPIGD-VFLNGSKIKGADYETLHELGTICIMCNDSAIDFNEFK 554
E DS FL E G E G +FL+ ++K AD++ +LG +C C + + F
Sbjct: 42 EFLDSMFLVIEKLGVHAEKKGSMIFLSSERVKLADWK---QLGAMCSDCYHCKLPLSSFI 98
Query: 555 QAFEKVGEATETALIVLAEK 574
+ + +A + L++ EK
Sbjct: 99 EIVTR--KAKDKFLVMYNEK 116
>2o2x_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 29.2 bits (66), Expect = 4.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 727 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 770
R ++ +IA AGI V+V+T N++ I R G F
Sbjct: 57 LRPQMLPAIATANRAGIPVVVVT--NQS---GIAR--GYFGWSA 93
>3rnv_A HC-Pro, helper component proteinase; cysteine protease,
proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Length = 158
Score = 28.6 bits (64), Expect = 5.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 4 HQTKYLHGVDPLGLDTVGFHL 24
H+TK +H VD G + G+H+
Sbjct: 111 HKTKIIHVVDSYGSLSTGYHV 131
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 29.7 bits (67), Expect = 5.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 738 CRAAGIRVIVITGDNKATAE--AICRRIG---VFTEEED 771
+ I + D E A + +G V TE+++
Sbjct: 188 GKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQN 226
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 28.7 bits (65), Expect = 6.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 731 VFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 770
+IAR A V++ T N++ + R G+F
Sbjct: 32 SLQAIARLTQADWTVVLAT--NQS---GLAR--GLFDTAT 64
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein, hypertherm
oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 29.3 bits (65), Expect = 7.1
Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 41/227 (18%)
Query: 372 LQQKLDEFGEQLSKVISI-------ICVAVWAINIGHFNDPAHGGSWIKGAVYYFKIAVA 424
+++L E + V++I + AV G G GAV K A
Sbjct: 144 TERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGR-----AAGRPGMGAVMGSKKLKA 198
Query: 425 LAV-------AAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTG 477
+ + A E L + + T+ +
Sbjct: 199 VVIRGTKEIPVADKEELKKLSQEA-----YNEILNSPGYPFWKRQGTMAAVEW--CNTNY 251
Query: 478 TLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPI---GDVFLNGSKIKGADYETLH 534
L T S I+G ++ + G Y + V + DYE +
Sbjct: 252 ALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVA 311
Query: 535 ELGTIC------------IMCNDSAIDFNEFKQAFEKVGEATETALI 569
LG+ + ++ +D + V EA E ++
Sbjct: 312 LLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGIL 358
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 29.4 bits (66), Expect = 7.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 730 EVFDSIARCRAAGIRVIVITGDNKATAEAICRR-IGVFTEE 769
E ++S + G+R+ + TGD ++ E + I V T E
Sbjct: 83 EKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSE 123
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Length = 185
Score = 28.6 bits (63), Expect = 7.6
Identities = 13/69 (18%), Positives = 21/69 (30%)
Query: 137 KVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 196
V+ + + RA E+ GD V VS + + +
Sbjct: 94 PVLVYENGRFIEKRAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLLEIKN 153
Query: 197 IKHTDAVPD 205
IK+ A D
Sbjct: 154 IKYVRANDD 162
Score = 28.6 bits (63), Expect = 7.6
Identities = 13/69 (18%), Positives = 21/69 (30%)
Query: 251 KVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 310
V+ + + RA E+ GD V VS + + +
Sbjct: 94 PVLVYENGRFIEKRAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLLEIKN 153
Query: 311 IKHTDAVPD 319
IK+ A D
Sbjct: 154 IKYVRANDD 162
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 28.4 bits (64), Expect = 8.2
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 727 PRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEE 770
V D++ + G ++V+T N++ I R G FTE +
Sbjct: 51 FIDGVIDAMRELKKMGFALVVVT--NQS---GIAR--GKFTEAQ 87
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 28.7 bits (65), Expect = 8.7
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 456 VRSLPSVET-LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLE-FEITGSTYE 513
R VE G ++ T T + F FD++ + F+ + +
Sbjct: 14 FRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSI---K 70
Query: 514 PIGDVFLNG 522
P D LNG
Sbjct: 71 PTVDDILNG 79
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomi europe, spine,
hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB:
2obc_A* 2o7p_A*
Length = 402
Score = 28.7 bits (65), Expect = 9.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 720 VVGMLDP-PR---KEVFDSIARCRAAGIRVIV 747
V M DP P+ + + R + AGI V
Sbjct: 124 VASMQDPNPQVAGR----GLYRLQQAGIDVSH 151
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine
sulfoximine; 2.35A {Acinetobacter baylyi}
Length = 182
Score = 28.3 bits (64), Expect = 9.6
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 735 IARCRAAGIRVIV--ITGDNKA 754
I R + + V+V I N A
Sbjct: 116 IKRAVESEVHVMVGCIDATNVA 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,792,270
Number of extensions: 956389
Number of successful extensions: 3135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3058
Number of HSP's successfully gapped: 111
Length of query: 962
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 859
Effective length of database: 3,825,930
Effective search space: 3286473870
Effective search space used: 3286473870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)