RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy886
(962 letters)
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 216 bits (551), Expect = 5e-65
Identities = 134/240 (55%), Positives = 170/240 (70%), Gaps = 1/240 (0%)
Query: 484 MSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGADYETLHELGTICIMC 543
MSV +MFI DK++G S EF ITGSTY P G+V N I+ ++ L EL TIC +C
Sbjct: 1 MSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALC 60
Query: 544 NDSAIDFNEFKQAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVETKWK 603
NDS++DFNE K +EKVGEATETAL L EK+N FN L + E+A A + K
Sbjct: 61 NDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMK 120
Query: 604 KEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKFPLTA 663
KEFTLEFSRDRKSMS YC+P KSS+ + G K+FVKGAPEGV++RC + R+G+ + P+T
Sbjct: 121 KEFTLEFSRDRKSMSVYCSPAKSSR-AAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTG 179
Query: 664 TLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLADSTKFASYEVNLTFVGVVGM 723
+K +IL + +++GTGRDTLRCL LAT D P K E+M L DS++F YE +LTFVGVVGM
Sbjct: 180 PVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGM 239
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 139 bits (352), Expect = 9e-36
Identities = 98/134 (73%), Positives = 109/134 (81%), Gaps = 2/134 (1%)
Query: 362 MSETEEIKTPLQQKLDEFGEQLSKVISIICVAVWAINIGHFNDPAHGGSWIKGAVYYFKI 421
+ TE+ KTPLQQKLDEFGEQLSKVIS+ICVAVW INIGHFNDP HGGSWI+GA+YYFKI
Sbjct: 124 PAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKI 183
Query: 422 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDK--TGTL 479
AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLG + +
Sbjct: 184 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLI 243
Query: 480 TTNQMSVSRMFIFD 493
++N V +F+
Sbjct: 244 SSNVGEVVCIFLTA 257
Score = 59.7 bits (144), Expect = 1e-09
Identities = 77/194 (39%), Positives = 91/194 (46%), Gaps = 29/194 (14%)
Query: 790 TAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNIGEVVSIFLTAALGL 849
T +A M + S+ + GRAIYNNMKQFIRYLISSN+GEVV IFLTAALGL
Sbjct: 202 TCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGL 261
Query: 850 PEALIK-KISTTN-------------------------RGKKKKLSYNFLDISLLGPAIH 883
PEALI ++ N R K+ L +L + +
Sbjct: 262 PEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 321
Query: 884 YQVDLTGGPDQVYLSGLPDSIYYLPTTVFATHHMSCLGGGDEFKGLDCHIFHDPHPMTMA 943
G + T TH M C F+GLDC IF P PMTMA
Sbjct: 322 VGAATVGA---AAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMA 378
Query: 944 LSVLVTIEMLNAMN 957
LSVLVTIEM NA+N
Sbjct: 379 LSVLVTIEMCNALN 392
Score = 49.3 bits (117), Expect = 1e-06
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 70 FAVLFCLCPQVLALFEEHEDFNSTLTSFVEPFVILLILIANAIVGVWQERNAESAIEALK 129
+ L + + E+ T+T+FVEPFVILLILIANAIVGVWQERNAE+AIEALK
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 130 EYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLI 175
EYEP + + P G+++ I LI
Sbjct: 121 EYEPAATEQDK--------------TPLQQKLDEFGEQLSKVISLI 152
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 115
Score = 117 bits (293), Expect = 2e-31
Identities = 85/115 (73%), Positives = 103/115 (89%)
Query: 248 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 307
EMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGES
Sbjct: 1 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGES 60
Query: 308 VSVIKHTDAVPDPRAVNQDKKNILFSGTNVAAGKARGIVMGTGLNTAIGKIRTEM 362
VSVIKHT+ VPDPRAVNQDKKN+LFSGTN+AAGKA GIV TG++T IGKIR +M
Sbjct: 61 VSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 115
Score = 78.6 bits (193), Expect = 5e-18
Identities = 55/75 (73%), Positives = 68/75 (90%)
Query: 134 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 193
EMGKV R D+ VQ+++A++IVPGDIVEV+VGDK+PADIR++ I STT+R+DQSILTGES
Sbjct: 1 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGES 60
Query: 194 VSVIKHTDAVPDPRA 208
VSVIKHT+ VPDPRA
Sbjct: 61 VSVIKHTEPVPDPRA 75
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 117 bits (294), Expect = 2e-30
Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 43/249 (17%)
Query: 484 MSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGADYETLHELGTICIMC 543
M+V+ M+ ++I E + + T L I +C
Sbjct: 2 MTVAHMWFDNQI---------HEADTTEDQSGATFDKRS--------PTWTALSRIAGLC 44
Query: 544 NDSAIDFNEFK---QAFEKVGEATETALIVLAEKLNPFNVSKSGLGRREQAIAVRQDVET 600
N + + + G+A+E+AL+ E + +
Sbjct: 45 NRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGS----------------VRKMRD 88
Query: 601 KWKKEFTLEFSRDRKSMSSYCTPLKSSKLGSSGPKLFVKGAPEGVLERCTHARIGSQKFP 660
+ K + F+ K S + L +KGAPE +L+RC+ + ++ P
Sbjct: 89 RNPKVAEISFNSTNKYQLSIH----EREDNPQSHVLVMKGAPERILDRCSSILVQGKEIP 144
Query: 661 LTATLKNRILDLTRQYGTGRDTLRCLGLATADNPLKPEDMNLA-DSTKFASYEVNLTFVG 719
L +++ + + G R LG + P D+ + L FVG
Sbjct: 145 LDKEMQDAFQNAYLELG--GLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVG 202
Query: 720 VVGMLDPPR 728
++ M+D
Sbjct: 203 LMSMIDHHH 211
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 82.8 bits (204), Expect = 3e-19
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 26/128 (20%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG-------- 764
+ T G D ++ ++ + GI+V +ITGDN +AEAI R +
Sbjct: 8 FDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV 67
Query: 765 ------------------VFTEEEDTTGKSYSKAEIGIAMGSGTAVAKSASEMVLADDNF 806
F + + ++A++GIA+GSG+ VA + ++VL D+
Sbjct: 68 LPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDL 127
Query: 807 SSIVAAVE 814
+VAA++
Sbjct: 128 RDVVAAIQ 135
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 83.3 bits (205), Expect = 1e-17
Identities = 37/317 (11%), Positives = 68/317 (21%), Gaps = 86/317 (27%)
Query: 450 AKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITG 509
+ L LG S I + + R+F DKI
Sbjct: 21 VSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRN-RIFQKDKI-------------- 65
Query: 510 STYEPIGDVFLNGSKIKGADYETLHELGTICIMCNDSAIDFNEFKQAFEKVGEATETALI 569
LN K G + I D +K+ A +
Sbjct: 66 ----------LNKLKSLGLNSNWDMLFIVFSIHLIDIL----------KKLSHDEIEAFM 105
Query: 570 VLAEKLNPFNVSKSGLGRREQAIAVRQDVETKWKKEFTLEFSRDRKSMSSYCTPLKSSKL 629
E + Q++ T F L + + + +
Sbjct: 106 YQDEPVE----------------LKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIY- 148
Query: 630 GSSGPKLFVKGAPEGVLERCTHARIGSQKFPLTATLKNRILDLTRQYGTGRDTLRCLGLA 689
+ A + +LK + L ++ + L
Sbjct: 149 -----AALEEFATTELHVSDATL----------FSLKGALWTLAQE------VYQEWYLG 187
Query: 690 TADNPLKPEDMNLADSTKFASYEVNLTFVGVVGMLDP--PRKEVFDSIARCRAAGIRVIV 747
+ + + G + P EV + + AG + +
Sbjct: 188 SKLYEDVEKKI-----------ARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGI 236
Query: 748 ITGDNKATAEAICRRIG 764
TG +G
Sbjct: 237 ATGRPYTETVVPFENLG 253
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 77.9 bits (191), Expect = 4e-17
Identities = 38/65 (58%), Positives = 45/65 (69%)
Query: 714 NLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTT 773
+ T LDPPRKEV SI CR AGIRVI+ITGDNK TA AICRRIG+F E E+
Sbjct: 8 DKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 67
Query: 774 GKSYS 778
++Y+
Sbjct: 68 DRAYT 72
Score = 61.3 bits (148), Expect = 2e-11
Identities = 36/38 (94%), Positives = 38/38 (100%)
Query: 779 KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEG 816
KAEIGIAMGSGTAVAK+ASEMVLADDNFS+IVAAVEEG
Sbjct: 131 KAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 168
Score = 35.9 bits (82), Expect = 0.009
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 467 CTSVICSDKTGTLTTNQMSVSR 488
CTSVICSDKTGTLTTNQ+ R
Sbjct: 1 CTSVICSDKTGTLTTNQLDPPR 22
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 45.7 bits (107), Expect = 8e-06
Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 757 EAICRRIGVFTEEEDTTGKSYS------KAEIGIAMGSGTAVAKSASEMVLADDNFSSIV 810
++ + + G S + +++ A + + L +F I
Sbjct: 151 PSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFARDYLLNECREQNLNHLPYQDFYEIR 210
Query: 811 AAVEEGRAIYNNMK 824
+E + + ++
Sbjct: 211 KEIENVKEVQEWLQ 224
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 35.8 bits (81), Expect = 0.015
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 729 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
++ ++I R + GI ++++TG+ AEA IG
Sbjct: 22 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGT 58
Score = 33.1 bits (74), Expect = 0.11
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 779 KAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEE 815
+A+ + K ++ V + A+
Sbjct: 186 VVGYKVAVAQAPKILKENADYVTKKEYGEGGAEAIYH 222
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 33.5 bits (76), Expect = 0.056
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 722 GMLDPP------RKEVFDSIARCR---AAGIRVIVITGDNKATAE--AICRRIGVFTEEE 770
G+LDP ++ D + R A G R +V + E + G+
Sbjct: 2 GLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYL 61
Query: 771 DTTGKSYSKAEIGIAMGSGTAVAKSASEMVL--ADDNFSSIVAAVEEGRAIYNNMKQFIR 828
++ + + + G ++ D S+VA ++ + + ++ +
Sbjct: 62 HHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 121
Query: 829 YLISSNIGEVVSIFLTAALGLPEALIKKISTTNRGKKKKLSYN 871
I A + EA+ + I TNR + + +YN
Sbjct: 122 QTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYN 164
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 33.4 bits (75), Expect = 0.078
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 729 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
+ +SI G+ V +++G+ A+ +G+
Sbjct: 23 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGI 59
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 33.6 bits (75), Expect = 0.11
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 21/122 (17%)
Query: 723 MLDPPRKEVF------DSIARCRAAGIRVIVI--TGDNKATAEAICR--RIGVFTEEEDT 772
+L F +S+ A G+ +I GD + + IGV E
Sbjct: 332 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 391
Query: 773 TGKSYSKAEIGIAMG--SGTAVAKSASEM-VLADDNFSSIVAAVEEGRAIYNNMKQFIRY 829
T + G + ++ + AD AV + N +
Sbjct: 392 TKSGLMSC-FDQILSQEKGKKLRENLRALRETAD-------RAVGPKGSSTENFITLVDL 443
Query: 830 LI 831
+
Sbjct: 444 VS 445
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 33.0 bits (74), Expect = 0.15
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 746 IVITGDNKATA-EAICRRIGVFTEEEDTTGKSY------SKAEIGIAMGSGTAVAKSASE 798
+ GD K + I R G+ EE + G A IG+AMG K+A++
Sbjct: 180 VTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAAD 239
Query: 799 MVLADDNFSSIVAAVEE 815
V A + I A++
Sbjct: 240 YVTAPIDEDGISKAMKH 256
Score = 27.6 bits (60), Expect = 6.8
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 729 KEVFDSIARCRAAGIRVIVITGDNKATAEAI 759
+++ A G+++ + TG KA +
Sbjct: 22 SSTIEALEAAHAKGLKIFIATGRPKAIINNL 52
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 32.8 bits (73), Expect = 0.20
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 734 SIARCRAAGIRVIVI--TGDNKATAEAICRRIGVFTE-EEDTTGKSYSKAEIGIAMG--S 788
S AG+ ++ D IC + E + + + +K I +
Sbjct: 376 STTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKL-INEVIAGDK 434
Query: 789 GTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLI 831
G + + A E+ G Y N+ + I+ ++
Sbjct: 435 GKKMKQKAMELK------KKAEENTRPGGCSYMNLNKVIKDVL 471
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 31.7 bits (71), Expect = 0.30
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 780 AEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEE 815
A GI + V + + + + +
Sbjct: 164 AHAGILFHAPENVIREFPQFPAV-HTYEDLKREFLK 198
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 31.6 bits (70), Expect = 0.43
Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 14/104 (13%)
Query: 732 FDSIARCRAAGIRVIVI--TGDNKATAEAICRRIGVFTEEEDTTGKSYSKAEIGIA---- 785
++S +GI +I + K A + I + E+
Sbjct: 362 WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGL 421
Query: 786 MGS--GTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFI 827
M G V E+ + + +++ +
Sbjct: 422 MEGEEGKGVRNKMKEL--KE----AACRVLKDDGTSTKALSLVA 459
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 29.6 bits (66), Expect = 0.45
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 482 NQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEPIGDVFLNGSKIKGADYETLHELGTICI 541
Q+S +++K + + E + + K G L ++ +
Sbjct: 4 TQLSSGNP-VYEKY------YRQVEAGNTGR-VLALDAAAFLKKSGLPDLILGKIWDLAD 55
Query: 542 MCNDSAIDFNEFKQAFEKVGEA 563
+ EF A V A
Sbjct: 56 TDGKGVLSKQEFFVALRLVACA 77
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 31.1 bits (69), Expect = 0.63
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 780 AEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQF 826
A AMG+ K + D+N + ++ + +N F
Sbjct: 225 ARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQA---VLDNTYPF 268
Score = 30.3 bits (67), Expect = 0.92
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 716 TFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGK 775
TF+ + PR + GI+ +V +G+ + + G
Sbjct: 12 TFLNDAKTYNQPR--FMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGA 69
Query: 776 SYSKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYLISSNI 835
+ + G T L D + VA + + N + L++ +
Sbjct: 70 LVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHY 129
Query: 836 GEVVSI 841
+ +
Sbjct: 130 HRLKPV 135
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 30.9 bits (68), Expect = 0.88
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 15/108 (13%)
Query: 732 FDSIARCRAAGIRVIVI--TGDNKATAEAICRRIGV---FTEEEDTTGKSYSKAEIGIA- 785
++SI G+ ++ + + A + + GV + + EI
Sbjct: 358 WNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGL 417
Query: 786 ---MGSGTAVAKSASEMVLADDNFSSIVAAVEEGRAIYNNMKQFIRYL 830
M + V K EM AV +G + ++ + I +
Sbjct: 418 KDLMDKDSIVHKKVQEMK------EMSRNAVVDGGSSLISVGKLIDDI 459
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 30.0 bits (66), Expect = 1.5
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 729 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVFTEEEDTTGKSYSKAEI 782
E D+I G V + TG +K + + Y I
Sbjct: 31 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTI 84
Score = 29.6 bits (65), Expect = 1.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 778 SKAEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEE 815
S + A+ + T AKS ++ VL + VA + +
Sbjct: 240 SNFKYSFAVANATDSAKSHAKCVLPVSHREGAVAYLLK 277
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 29.9 bits (66), Expect = 1.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 729 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIG 764
V ++IA RA G+ V++ TG A + +
Sbjct: 24 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELH 59
Score = 28.0 bits (61), Expect = 4.9
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 780 AEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEE 815
A +G+A+ + K + V + + A+E+
Sbjct: 232 AGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEK 267
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 29.6 bits (65), Expect = 1.5
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 730 EVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGVF 766
E R + TG + +A + +++G+
Sbjct: 22 EHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLM 58
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 29.5 bits (65), Expect = 1.9
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 713 VNLTFVGVVGMLDPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 759
VNLT R +V +A AG+ ++ITG N ++
Sbjct: 6 VNLTS----SQFAKDRDDV---VACAFDAGVNGLLITGTNLRESQQA 45
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 273
Score = 29.3 bits (66), Expect = 2.2
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 386 VISIICVAVWAINIGH--FNDPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAVITTCLA 443
V +I + + IG+ P I ++ + L A + EG T A
Sbjct: 36 VSAIFFIFLGVSLIGYAASQGPTWDPFAI--SINPPDLKYGLGAAPLLEGGFWQAITVCA 93
Query: 444 LG 445
LG
Sbjct: 94 LG 95
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 28.7 bits (63), Expect = 3.6
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 729 KEVFDSIARCRAAGIRVIVITGDNKATAEAICRRIGV 765
E +++ + + GI V+V TG +I +G+
Sbjct: 21 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 57
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 28.4 bits (62), Expect = 4.2
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 456 VRSLPSVET-LGCTSVICSDKTGTLTTNQMSVSRMFIFDKIEGSDSSFLEFEITGSTYEP 514
R VE G ++ T T + F FD++ + +I + +P
Sbjct: 13 FRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCK--QSDIFDFSIKP 70
Query: 515 IGDVFLN 521
D LN
Sbjct: 71 TVDDILN 77
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 28.5 bits (62), Expect = 4.2
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 725 DPPRKEVFDSIARCRAAGIRVIVITGDNKATAEAI 759
+ K+V D +A+ A ++ + + +
Sbjct: 16 ESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHM 50
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 28.2 bits (63), Expect = 4.7
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 386 VISIICVAVWAINIGH--------FNDPAHGGSWIKGAVYYFKIAVALAVAAIPEGLPAV 437
V+ + + I + + ++ ++ L +A + EG
Sbjct: 36 VVGFCFTLLGVLLIVWGATIGPTGPTSDLQTYNLWRISIAPPDLSYGLRMAPLTEGGLWQ 95
Query: 438 ITTCLALG 445
I T A G
Sbjct: 96 IITICAAG 103
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase
UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Length = 240
Score = 28.0 bits (61), Expect = 4.7
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 735 IARCRAAGIRVIVITGDNKATAEAICRRIGV 765
I R AG+ ++V G + V
Sbjct: 187 IEASRKAGLEIMVYYGGDDMAVHREIATSDV 217
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A,
SdbA {Clostridium thermocellum [TaxId: 1515]}
Length = 162
Score = 27.5 bits (61), Expect = 5.8
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 26/111 (23%)
Query: 272 DIVEVSVGDKIPADIRLIKI-----YSTTIRIDQSIL------TGESVS---------VI 311
D + VGD + +R+ I + I D +L TG+ + V+
Sbjct: 10 DRNKGEVGDILIGTVRINNIKNFAGFQVNIVYDPKVLMAVDPETGKEFTSSTFPPGRTVL 69
Query: 312 KHTDAVPDPRAVNQDKKNIL-FSG--TNVAAGKARGIVMGTGLNTAIGKIR 359
K+ P A N +K IL F+ + +A K G+ +G I KI
Sbjct: 70 KNNAYGPIQIADNDPEKGILNFALAYSYIAGYKETGVAEESG---IIAKIG 117
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 27.6 bits (60), Expect = 6.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 780 AEIGIAMGSGTAVAKSASEMVLADDNFSSIVAAVEE 815
A + +AM + K AS++V +N S + +E
Sbjct: 225 AGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLER 260
>d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 103
Score = 26.3 bits (58), Expect = 7.8
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 506 EITGSTYEPIGDVFLNGSKIKGADYETLHELGTICIMCNDSA--IDFNEFKQAFEKV--- 560
E+TG ++ L + + T G F+E K+ V
Sbjct: 24 EMTGKNFDKW----LKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVLAFVAED 79
Query: 561 -----GEATETALIVLAEKL 575
+ + L + EKL
Sbjct: 80 RARQSKKPIQDELDAITEKL 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0389 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,489,713
Number of extensions: 168567
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 49
Length of query: 962
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 868
Effective length of database: 1,116,976
Effective search space: 969535168
Effective search space used: 969535168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)