BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8860
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6T3I9|RL6_JANMA 50S ribosomal protein L6 OS=Janthinobacterium sp. (strain
Marseille) GN=rplF PE=3 SV=1
Length = 177
Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 122/156 (78%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GKMPI +P E T+ + +IT+KGPLG L Q+ N LVNI+ND+ L F N+SR A +
Sbjct: 4 VGKMPIALPSGAEATITAAQITVKGPLGSLTQSLNGLVNIENDNGTLNFKVANDSREANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++NNM+ GVTKGFEKKL L+GVG+RA + + LNL LGFSHP+++++P +
Sbjct: 64 MSGTLRALVNNMVNGVTKGFEKKLTLVGVGYRAAAQGDKLNLSLGFSHPVVHQMPQGVKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEILIKGI++Q VG VAAE+R Y +PEPYKG
Sbjct: 124 ETPTQTEILIKGIDRQKVGQVAAEVRAYREPEPYKG 159
>sp|A4G9S3|RL6_HERAR 50S ribosomal protein L6 OS=Herminiimonas arsenicoxydans GN=rplF
PE=3 SV=1
Length = 177
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 118/156 (75%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GKMPI +P E T+ + +IT+KGPLG L Q N LV I+N S L F N+SR A +
Sbjct: 4 VGKMPIALPSGAEATITAEQITVKGPLGSLSQALNGLVQIENASGTLNFKPANDSREANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++NNM+ GVTKGFEKKL L+GVGFRA + + LNL LGFSHP+++ +P I
Sbjct: 64 MSGTLRALVNNMVNGVTKGFEKKLMLVGVGFRAAAQGDKLNLSLGFSHPVVHAMPAGIKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEILIKGI++Q+VG VAAE+R Y PEPYKG
Sbjct: 124 ETPTQTEILIKGIDRQSVGQVAAEVRAYRPPEPYKG 159
>sp|B2JI50|RL6_BURP8 50S ribosomal protein L6 OS=Burkholderia phymatum (strain DSM 17167
/ STM815) GN=rplF PE=3 SV=1
Length = 176
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L+ +IT+KGPLG + QN N LV + ND+ L F + SR A +
Sbjct: 4 VGKSPIALQ-GAEVALSDERITVKGPLGSISQNANRLVKVVNDNGTLKFEPADESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR+++ NM+ GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 MSGTMRALVANMVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPSQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|Q13TI5|RL6_BURXL 50S ribosomal protein L6 OS=Burkholderia xenovorans (strain LB400)
GN=rplF PE=3 SV=1
Length = 176
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK P+ + EV L+ +IT+KGPLG + Q N+LV + ND+ L F ++ SR A +
Sbjct: 4 VGKSPVALQ-GAEVALSDERITVKGPLGTISQAANSLVKVVNDNGTLKFEPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR+++ NM+ GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 MSGTMRALVANMVNGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|B2T736|RL6_BURPP 50S ribosomal protein L6 OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=rplF PE=3 SV=1
Length = 176
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK P+ + EV L+ ++IT+KGPLG + Q N LV + ND+ L F ++ SR A +
Sbjct: 4 VGKSPVALQ-GAEVALSDDRITVKGPLGTITQAANRLVKVVNDNGTLNFEPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR+++ NM+ GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 MSGTMRALVANMVNGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|Q7NQG7|RL6_CHRVO 50S ribosomal protein L6 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rplF PE=3 SV=1
Length = 177
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 114/156 (73%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP VEV + +T+KG LG L N V +K D+ L F A N+S+ A++
Sbjct: 4 VAKNPVAIPAGVEVKFGAADVTVKGALGSLSTALCNDVEVKLDNGQLTFAAKNDSKFARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++NNM+ GV+KGFEKKLQL+GVG+RA+ + + LNL LGFSHP+ +K+P I
Sbjct: 64 MSGTLRALLNNMVNGVSKGFEKKLQLVGVGYRAQAQGDTLNLSLGFSHPVAHKMPAGIKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEIL+KG +KQ VG VAAEIR Y PEPYKG
Sbjct: 124 ETPTQTEILVKGADKQLVGQVAAEIRAYRSPEPYKG 159
>sp|C1DAT2|RL6_LARHH 50S ribosomal protein L6 OS=Laribacter hongkongensis (strain HLHK9)
GN=rplF PE=3 SV=1
Length = 177
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 113/156 (72%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VE + +I +KGPLG L N V ++ + N L F A + S+ ++S
Sbjct: 4 VAKNPVILPAGVEAKFTAAEIVVKGPLGQLAMPLNAGVEVRLEDNALKFAAKDESKASRS 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR+++NNM+ GV+KGFE+KLQL+GVG+RA+ + LNL LGFSHP+++ +P +
Sbjct: 64 MSGTMRALVNNMVTGVSKGFERKLQLVGVGYRAQAQGAALNLTLGFSHPVVHPMPEGVAV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEI++KG++KQ VG VAAEIR Y PEPYKG
Sbjct: 124 ETPSQTEIILKGVDKQKVGQVAAEIRAYRAPEPYKG 159
>sp|Q5P317|RL6_AROAE 50S ribosomal protein L6 OS=Aromatoleum aromaticum (strain EbN1)
GN=rplF PE=3 SV=1
Length = 177
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 118/156 (75%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP VE+T+ ++++++KGPLG +KQ N V ++ D + L A +++
Sbjct: 4 VAKNPVAIPQGVEITIGADEVSVKGPLGAVKQYIGNAVTLERDGDALVCKAREGVANSRA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++NNM+ GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 64 MSGTVRALVNNMVTGVTKGFERKLTLVGVGYRAQAQGDKLNLTLGFSHPVVHQMPAGVKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y +PEPYKG
Sbjct: 124 ETPTQTEIVIKGIDKQQVGQVAAEVRAYREPEPYKG 159
>sp|Q2L270|RL6_BORA1 50S ribosomal protein L6 OS=Bordetella avium (strain 197N) GN=rplF
PE=3 SV=1
Length = 177
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VE ++ ++IT+KGPLG L Q VNI D+ L F A N+SR A +
Sbjct: 4 IAKYPVELPKGVEASIQQDQITVKGPLGTLVQALTGDVNIVEDAGKLTFAAANDSRHANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++ NM+ GV+KGFE+KL L+GVG+RA ++ + L LGFSH IL+K+P I
Sbjct: 64 MSGTVRALVANMVTGVSKGFERKLTLVGVGYRASVQGEAVKLQLGFSHDILHKLPAGIKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI+IKG NKQ VG VAAEIR Y +PEPYKG
Sbjct: 124 ECPTQTEIVIKGANKQVVGQVAAEIRAYREPEPYKG 159
>sp|Q2SU42|RL6_BURTA 50S ribosomal protein L6 OS=Burkholderia thailandensis (strain E264
/ ATCC 700388 / DSM 13276 / CIP 106301) GN=rplF PE=3
SV=1
Length = 176
Score = 181 bits (459), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGSITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II NM+ GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANMVQGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|A4JAQ5|RL6_BURVG 50S ribosomal protein L6 OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=rplF PE=3 SV=1
Length = 176
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L +N SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQPVNPLVNVANNDGTLNLAPVNESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 MSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|Q0BJ31|RL6_BURCM 50S ribosomal protein L6 OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLSPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVQGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|Q63Q26|RL6_BURPS 50S ribosomal protein L6 OS=Burkholderia pseudomallei (strain
K96243) GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|A3NEG4|RL6_BURP6 50S ribosomal protein L6 OS=Burkholderia pseudomallei (strain 668)
GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|Q3JMS8|RL6_BURP1 50S ribosomal protein L6 OS=Burkholderia pseudomallei (strain
1710b) GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|A3P098|RL6_BURP0 50S ribosomal protein L6 OS=Burkholderia pseudomallei (strain
1106a) GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|A1V888|RL6_BURMS 50S ribosomal protein L6 OS=Burkholderia mallei (strain SAVP1)
GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|Q62GM0|RL6_BURMA 50S ribosomal protein L6 OS=Burkholderia mallei (strain ATCC 23344)
GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|A2S7J1|RL6_BURM9 50S ribosomal protein L6 OS=Burkholderia mallei (strain NCTC 10229)
GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|A3MRW9|RL6_BURM7 50S ribosomal protein L6 OS=Burkholderia mallei (strain NCTC 10247)
GN=rplF PE=3 SV=1
Length = 176
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + +++SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAVNPLVNVANNDGTLNLSPVDDSREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P I
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGIKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|B4E5D5|RL6_BURCJ 50S ribosomal protein L6 OS=Burkholderia cepacia (strain J2315 /
LMG 16656) GN=rplF PE=3 SV=1
Length = 176
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLSPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|A0K3P0|RL6_BURCH 50S ribosomal protein L6 OS=Burkholderia cenocepacia (strain
HI2424) GN=rplF PE=3 SV=1
Length = 176
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLSPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|B1JU37|RL6_BURCC 50S ribosomal protein L6 OS=Burkholderia cenocepacia (strain MC0-3)
GN=rplF PE=3 SV=1
Length = 176
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLSPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|Q1BRW3|RL6_BURCA 50S ribosomal protein L6 OS=Burkholderia cenocepacia (strain AU
1054) GN=rplF PE=3 SV=1
Length = 176
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLSPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|B1YRP4|RL6_BURA4 50S ribosomal protein L6 OS=Burkholderia ambifaria (strain MC40-6)
GN=rplF PE=3 SV=1
Length = 176
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L + ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLSPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|A1KB12|RL6_AZOSB 50S ribosomal protein L6 OS=Azoarcus sp. (strain BH72) GN=rplF PE=3
SV=1
Length = 177
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 117/156 (75%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP VEV++++ +I +KGPLG L + ++ V ++ D L A + A++
Sbjct: 4 VAKNPVVIPKGVEVSISAAEIAIKGPLGTLVRPQHPAVTVEQDGEALVCKARDGQVNARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++NNM++GV+KGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 64 MSGTVRALLNNMVVGVSKGFERKLLLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPAGVKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEI+IKG++KQ VG VAAE+R Y PEPYKG
Sbjct: 124 ETPSQTEIVIKGVDKQQVGQVAAEVRAYRAPEPYKG 159
>sp|Q39KF2|RL6_BURS3 50S ribosomal protein L6 OS=Burkholderia sp. (strain 383) GN=rplF
PE=3 SV=1
Length = 176
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LVN+ N+ L ++ SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGAITVKGPLGTITQAINPLVNVANNDGTLNLAPVDESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGINKQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGINKQQVGQVAAEVRGYRPPEPYKG 158
>sp|Q7VTB6|RL6_BORPE 50S ribosomal protein L6 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=rplF PE=3 SV=1
Length = 177
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 115/156 (73%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VE ++ ++IT+KGPLGIL Q+ VN+ + L F N+SR A +
Sbjct: 4 IAKYPVELPKGVEASIQPDQITVKGPLGILVQSLTGDVNVAQEDGKLTFVVANDSRHANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++ NM+ GV+KGFE+KL L+GVG+RA+I+ + + L LGFSH +++++P +
Sbjct: 64 MSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVKLQLGFSHDVVHQLPAGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI+IKG NKQ VG VAAEIR+Y +PEPYKG
Sbjct: 124 ECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKG 159
>sp|Q12G88|RL6_POLSJ 50S ribosomal protein L6 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rplF PE=3 SV=1
Length = 177
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 111/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GKMP+ +P V+V + ++I +KG LG L +N LV IKND+ L F N+SR A +
Sbjct: 4 VGKMPVTLPQGVDVAIKDDQINVKGALGALALTQNALVTIKNDAGKLTFAPANDSREANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR ++NNM+ GVTKGFEKKL LIGVG++A+ + LNL +G+SHP++ +P I
Sbjct: 64 MSGTMRQLVNNMVTGVTKGFEKKLSLIGVGYKAQAQGAKLNLTVGYSHPVIMDMPAGITV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
TP+ TE++IKG ++Q VG +AAE+R PEPYKG
Sbjct: 124 ATPTPTEVVIKGSDRQRVGQIAAEVRAVRPPEPYKG 159
>sp|Q7W2E0|RL6_BORPA 50S ribosomal protein L6 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rplF PE=3 SV=1
Length = 177
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 114/156 (73%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VE ++ ++IT+KGPLG L Q+ VN+ + L F N+SR A +
Sbjct: 4 IAKYPVELPKGVEASIQPDQITVKGPLGTLVQSLTGDVNVAQEDGKLTFVVANDSRHANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++ NM+ GV+KGFE+KL L+GVG+RA+I+ + + L LGFSH +++++P +
Sbjct: 64 MSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVKLQLGFSHDVVHQLPAGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI+IKG NKQ VG VAAEIR+Y +PEPYKG
Sbjct: 124 ECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKG 159
>sp|Q7WRA8|RL6_BORBR 50S ribosomal protein L6 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rplF PE=3 SV=1
Length = 177
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 114/156 (73%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VE ++ ++IT+KGPLG L Q+ VN+ + L F N+SR A +
Sbjct: 4 IAKYPVELPKGVEASIQPDQITVKGPLGTLVQSLTGDVNVAQEDGKLTFVVANDSRHANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++ NM+ GV+KGFE+KL L+GVG+RA+I+ + + L LGFSH +++++P +
Sbjct: 64 MSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVKLQLGFSHDVVHQLPAGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI+IKG NKQ VG VAAEIR+Y +PEPYKG
Sbjct: 124 ECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKG 159
>sp|A9BRW6|RL6_DELAS 50S ribosomal protein L6 OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=rplF PE=3 SV=1
Length = 177
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 111/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ IP V+V++ ++I +KG G L Q +N LV I N+ L F +N+SR A +
Sbjct: 4 VAKTPVAIPAGVDVSIKDDQINVKGTGGALSQAQNALVKISNNEGKLSFEPVNDSREANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR ++NNM++GV+KGFEKKL L+GVGF+A + LNL +GFSHP+ +++P I
Sbjct: 64 MSGTMRQLVNNMVVGVSKGFEKKLSLVGVGFKASASGSKLNLAIGFSHPVNFEMPAGITV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
TP+ TEIL+KG ++QAVG +AAEIR PEPYKG
Sbjct: 124 TTPTPTEILVKGADRQAVGQMAAEIRAVRPPEPYKG 159
>sp|A4XZ75|RL6_PSEMY 50S ribosomal protein L6 OS=Pseudomonas mendocina (strain ymp)
GN=rplF PE=3 SV=1
Length = 177
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 115/156 (73%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VEV L ++++KG G L+ N ++ V + + + L F A N + K+
Sbjct: 4 VAKNPVVLPAGVEVKLAGQQLSVKGAKGALELNVHSSVEVIQEGSELRFAARNGDQQNKA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GT R+++NNM+IGV++GFE+KLQL+GVG++A+ + LNL LGFSHPI Y++P ++
Sbjct: 64 MAGTTRALVNNMVIGVSQGFERKLQLVGVGYKAQAKGQVLNLALGFSHPIDYELPAGVVA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEILIKGI+KQ VG VAAEIR + +PEPYKG
Sbjct: 124 ETPNQTEILIKGIDKQLVGQVAAEIRDFRRPEPYKG 159
>sp|B8GV43|RL6_THISH 50S ribosomal protein L6 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rplF PE=3 SV=1
Length = 177
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 108/156 (69%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K PI +P V VT+N N + LKGP G L + + V + + N L N +
Sbjct: 4 VAKKPIALPSGVNVTINGNNVALKGPKGQLSYDLHADVEVSQEGNTLQLAPRNGDASKYA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GTMR+++NNM++GV++GFE+KL+L+GVG+RA+ + LNL LGFSHP+ Y +P I
Sbjct: 64 MAGTMRALVNNMVVGVSQGFERKLELVGVGYRAQAQGKTLNLTLGFSHPVAYPVPEGITI 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEIL+KG++KQ VG VAAEIR + PEPYKG
Sbjct: 124 ETPSQTEILVKGVDKQVVGQVAAEIRAFRPPEPYKG 159
>sp|A9IHT3|RL6_BORPD 50S ribosomal protein L6 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rplF PE=3 SV=1
Length = 177
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 111/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VE + ++IT+KGPLG L Q V + D+ L F A N SR A +
Sbjct: 4 IAKYPVELPKGVEANIQQDQITVKGPLGTLSQALTGDVTVALDNGKLTFVAANESRHAGA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R+++ NM+ GV+KGFE+KL L+GVG+RA+++ + + L LGFSH I++K+P +
Sbjct: 64 MSGTVRALVANMVTGVSKGFERKLTLVGVGYRAQVQGDAVKLQLGFSHDIVHKLPAGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI+IKG NKQ VG VAAE+R Y +PEPYKG
Sbjct: 124 ECPTQTEIVIKGSNKQVVGQVAAELRAYREPEPYKG 159
>sp|Q3SLN4|RL6_THIDA 50S ribosomal protein L6 OS=Thiobacillus denitrificans (strain ATCC
25259) GN=rplF PE=3 SV=1
Length = 176
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Query: 125 PIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGT 184
PI +P VEVTL + I +KGPLG + Q ++ V + + VL F + +S A +M+GT
Sbjct: 8 PITVPKGVEVTLG-DGIAVKGPLGSMSQPMSSDVTVALNDGVLTFAPVGSSIQANAMAGT 66
Query: 185 MRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPS 244
+R+++NNM+ GV+KGFE+KL L+GVG+RA+ + + LNL LGFSHP+++K+P I ETP+
Sbjct: 67 LRALVNNMVQGVSKGFERKLTLVGVGYRAQAQGDALNLSLGFSHPVVHKMPAGIKVETPT 126
Query: 245 QTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
QTEI+IKGI++QAVG VAA++R Y PEPYKG
Sbjct: 127 QTEIVIKGIDRQAVGQVAADVRAYRPPEPYKG 158
>sp|A2SLE2|RL6_METPP 50S ribosomal protein L6 OS=Methylibium petroleiphilum (strain PM1)
GN=rplF PE=3 SV=1
Length = 177
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 113/156 (72%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GKMPI +P V+V +N+++I++KG LG L + N LV++KN+ L F + S A +
Sbjct: 4 VGKMPIAVPKGVDVAINADQISVKGSLGTLVRPVNRLVSVKNEDGKLSFAPADESAAANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGTMR+++ NM+ GV+KGFE+KL L+GVGFRA+ + LNL +GFSHP++ +P I
Sbjct: 64 MSGTMRALVANMVNGVSKGFERKLTLVGVGFRAQAQGAKLNLQVGFSHPVVKDMPAGIKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
E P+QTEI+IKG ++Q VG +AAE+R PEPYKG
Sbjct: 124 ECPTQTEIVIKGSDRQVVGQIAAEVRAIRPPEPYKG 159
>sp|Q2YAY2|RL6_NITMU 50S ribosomal protein L6 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rplF PE=3 SV=1
Length = 177
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 114/156 (73%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK P+ +P NVEV L+ +++ +KGPLG+L+ + ++I+ L A ++S+ A +
Sbjct: 4 VGKNPVSVPANVEVRLSGSEVEVKGPLGMLRHELVSDISIERKGESLLVKAADDSKHANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M GT R+++ NM+ GVT GFEK+L L+GVG+RA+ N LNL LGFSHPI +K+P I
Sbjct: 64 MWGTTRALLANMVKGVTTGFEKRLILVGVGYRAQAADNVLNLTLGFSHPIAHKMPEGIKV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTE++IKG++KQ VG VAA++R Y +PEPYKG
Sbjct: 124 ETPSQTEVVIKGMDKQQVGQVAADVRAYREPEPYKG 159
>sp|B1XSR6|RL6_POLNS 50S ribosomal protein L6 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rplF PE=3 SV=1
Length = 177
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 107/156 (68%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI +P E+++N IT+KGPLG L N + V +K + VL N+S A +
Sbjct: 4 VGKSPITVPKGAEISINGANITVKGPLGTLTHNLHPSVGLKQEDGVLTVVLNNDSPEAGA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
SGT R+++NNM++GVT GFE+KL L+GVG+RA + L L LGFSH I+Y +P +
Sbjct: 64 QSGTARALVNNMVVGVTTGFERKLSLVGVGYRAAAQGETLKLQLGFSHDIIYNLPKGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEI+IKG NKQ VG VAAE+R Y PEPYKG
Sbjct: 124 ETPSQTEIIIKGSNKQQVGQVAAEVRAYRSPEPYKG 159
>sp|A6T3J0|RS8_JANMA 30S ribosomal protein S8 OS=Janthinobacterium sp. (strain
Marseille) GN=rpsH PE=3 SV=1
Length = 131
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Query: 1 MSMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFE 60
MSMSDPIADMLT IRN Q+V K + MPSSK+KIAIA VLKDEGYI+DF + + K E
Sbjct: 1 MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDFAVTEA-AGKAE 59
Query: 61 LKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS 120
LKI LKYY RPVIE L+RVSRPGLRIYK KD+IP +MNGLG+ I+ST G++TDRKAR+
Sbjct: 60 LKIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARA 119
Query: 121 MG 122
G
Sbjct: 120 TG 121
>sp|A1W323|RL6_ACISJ 50S ribosomal protein L6 OS=Acidovorax sp. (strain JS42) GN=rplF
PE=3 SV=1
Length = 177
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK P+ IP V+V++ ++I++KG G+L +N LV + N+ L F +N+SR A +
Sbjct: 4 VGKSPVSIPAGVDVSIKDDQISVKGAGGVLSLAQNALVKVSNNEGKLSFEPVNDSREANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R ++NNM++GV+KGFEKKL LIGVGF+A N LNL +GFSHP+ +++P I
Sbjct: 64 MSGTVRQLVNNMVVGVSKGFEKKLTLIGVGFKAAASGNKLNLAIGFSHPVNFEMPTGITV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
TP+ TEI+IKG ++Q VG +AAEIR PEPYKG
Sbjct: 124 ATPTPTEIVIKGADRQVVGQLAAEIRAVRPPEPYKG 159
>sp|B9MBV2|RL6_ACIET 50S ribosomal protein L6 OS=Acidovorax ebreus (strain TPSY) GN=rplF
PE=3 SV=1
Length = 177
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK P+ IP V+V++ ++I++KG G+L +N LV + N+ L F +N+SR A +
Sbjct: 4 VGKSPVSIPAGVDVSIKDDQISVKGAGGVLSLAQNALVKVSNNEGKLSFEPVNDSREANA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
MSGT+R ++NNM++GV+KGFEKKL LIGVGF+A N LNL +GFSHP+ +++P I
Sbjct: 64 MSGTVRQLVNNMVVGVSKGFEKKLTLIGVGFKAAASGNKLNLAIGFSHPVNFEMPTGITV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
TP+ TEI+IKG ++Q VG +AAEIR PEPYKG
Sbjct: 124 ATPTPTEIVIKGADRQVVGQLAAEIRAVRPPEPYKG 159
>sp|Q31IW7|RL6_THICR 50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2)
GN=rplF PE=3 SV=1
Length = 177
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 111/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K PI +P V+VT+N +++KG G L + N+ V++ + V+ N S+ A +
Sbjct: 4 IAKSPITLPSGVDVTINGTDVSVKGSKGALSKTFNHAVSVSLEDGVVTVAPKNESKNAWA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+GT RSIINNM++GVT+GFEKKLQL+GVG+RA+ + LNL LGFSHP+ +++P +
Sbjct: 64 QAGTARSIINNMVLGVTEGFEKKLQLVGVGYRAQAQGKVLNLTLGFSHPVNHELPEGVTV 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQTEI++KG +KQ VG VAAEIR Y PEPYKG
Sbjct: 124 ETPSQTEIVVKGADKQVVGQVAAEIRGYRPPEPYKG 159
>sp|B1JAJ7|RL6_PSEPW 50S ribosomal protein L6 OS=Pseudomonas putida (strain W619)
GN=rplF PE=3 SV=1
Length = 177
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VEV ++++KG G L+ N ++ V + +S L F A N + A++
Sbjct: 4 VAKNPVKLPAGVEVKFAGQQLSVKGAKGTLELNVHSSVEVTEESGELRFVARNGDQQARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GT R+++NNM+ GV++GFE+KLQL+GVG++A+ + LNL LGFSHP+ Y++P I
Sbjct: 64 MAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPAGITA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQT+ILIKGI+KQ VG VAAEIR + PEPYKG
Sbjct: 124 ETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKG 159
>sp|A9ADK8|RL6_BURM1 50S ribosomal protein L6 OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=rplF PE=3 SV=1
Length = 176
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI + EV L IT+KGPLG + Q N LV + N+ L + SR A +
Sbjct: 4 VGKSPIALQ-GAEVKLADGVITVKGPLGTITQAVNPLVKVANNDGTLNLAPADESREANA 62
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
+SGTMR+II N + GVTKGFE+KL L+GVG+RA+ + + LNL LGFSHP+++++P +
Sbjct: 63 LSGTMRAIIANAVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEGVKA 122
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKGI+KQ VG VAAE+R Y PEPYKG
Sbjct: 123 ETPTQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKG 158
>sp|Q88QM0|RL6_PSEPK 50S ribosomal protein L6 OS=Pseudomonas putida (strain KT2440)
GN=rplF PE=3 SV=1
Length = 177
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VEV ++++KG G L+ N ++ V + +S L F A N + A++
Sbjct: 4 VAKNPVKLPSGVEVKFAGQQLSVKGAKGTLELNVHSSVEVTEESGELRFVARNGDQQARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GT R+++NNM+ GV++GFE+KLQL+GVG++A+ + LNL LGFSHP+ Y++P I
Sbjct: 64 MAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPAGITA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQT+ILIKGI+KQ VG VAAEIR + PEPYKG
Sbjct: 124 ETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKG 159
>sp|B0KK82|RL6_PSEPG 50S ribosomal protein L6 OS=Pseudomonas putida (strain GB-1)
GN=rplF PE=3 SV=1
Length = 177
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VEV ++++KG G L+ N ++ V + +S L F A N + A++
Sbjct: 4 VAKNPVKLPSGVEVKFAGQQLSVKGAKGTLELNVHSSVEVTEESGELRFVARNGDQQARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GT R+++NNM+ GV++GFE+KLQL+GVG++A+ + LNL LGFSHP+ Y++P I
Sbjct: 64 MAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPAGITA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQT+ILIKGI+KQ VG VAAEIR + PEPYKG
Sbjct: 124 ETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKG 159
>sp|A5VXR2|RL6_PSEP1 50S ribosomal protein L6 OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=rplF PE=3 SV=1
Length = 177
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 112/156 (71%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VEV ++++KG G L+ N ++ V + +S L F A N + A++
Sbjct: 4 VAKNPVKLPSGVEVKFAGQQLSVKGAKGTLELNVHSSVEVTEESGELRFVARNGDQQARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GT R+++NNM+ GV++GFE+KLQL+GVG++A+ + LNL LGFSHP+ Y++P I
Sbjct: 64 MAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPAGITA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQT+ILIKGI+KQ VG VAAEIR + PEPYKG
Sbjct: 124 ETPSQTDILIKGIDKQLVGQVAAEIRDFRPPEPYKG 159
>sp|A4SUX6|RL6_POLSQ 50S ribosomal protein L6 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rplF PE=3 SV=1
Length = 177
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 107/156 (68%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+GK PI +P E+++N +T+KGPLG L N + V +K + VL N+S A +
Sbjct: 4 VGKSPITVPKGAEISINGANVTVKGPLGTLTHNLHPSVGLKQEDGVLTVVLNNDSPEAGA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
SGT R+++NNM++GVT GFE+KL L+GVG+RA + L L LGFSH I+Y +P +
Sbjct: 64 QSGTARALVNNMVVGVTTGFERKLSLVGVGYRAAAQGETLKLQLGFSHDIIYNLPKGVKA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETP+QTEI+IKG NKQ VG VAAE+R Y PEPYKG
Sbjct: 124 ETPTQTEIIIKGSNKQQVGQVAAEVRAYRSPEPYKG 159
>sp|Q1IFV1|RL6_PSEE4 50S ribosomal protein L6 OS=Pseudomonas entomophila (strain L48)
GN=rplF PE=3 SV=1
Length = 177
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 113/156 (72%)
Query: 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKS 180
+ K P+ +P VEV ++++KG G L+ N ++ V + ++ L F+A N + A++
Sbjct: 4 VAKNPVKLPAGVEVKFAGQQLSVKGAKGTLELNVHSSVEVTEEAGELRFSARNGDQQARA 63
Query: 181 MSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIIC 240
M+GT R+++NNM+ GV++GFE+KLQL+GVG++A+ + LNL LGFSHP+ Y++P I
Sbjct: 64 MAGTTRALVNNMVQGVSQGFERKLQLVGVGYKAQAKGTVLNLALGFSHPVDYELPAGITA 123
Query: 241 ETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKG 276
ETPSQT+ILIKGI+KQ VG VAAE+R + PEPYKG
Sbjct: 124 ETPSQTDILIKGIDKQLVGQVAAEVRGFRPPEPYKG 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,907,762
Number of Sequences: 539616
Number of extensions: 5509771
Number of successful extensions: 19656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2465
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 15150
Number of HSP's gapped (non-prelim): 2623
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)