Query psy8860
Match_columns 374
No_of_seqs 398 out of 2428
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:14:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rl6_A Protein (ribosomal prot 100.0 1.2E-58 3.9E-63 416.8 18.7 167 119-285 1-167 (177)
2 3v2d_H 50S ribosomal protein L 100.0 4.1E-58 1.4E-62 414.5 19.5 167 118-284 1-167 (180)
3 1nkw_E 50S ribosomal protein L 100.0 8.7E-58 3E-62 419.5 21.2 170 116-285 26-195 (212)
4 3r8s_G 50S ribosomal protein L 100.0 1.1E-58 3.9E-63 416.8 14.5 167 119-285 1-167 (176)
5 3bbo_I Ribosomal protein L6; l 100.0 9.2E-58 3.1E-62 422.6 9.1 169 117-285 42-211 (223)
6 2zjr_E 50S ribosomal protein L 100.0 7.2E-59 2.5E-63 420.3 0.4 168 118-285 1-168 (185)
7 1vq8_E 50S ribosomal protein L 100.0 2.8E-49 9.4E-54 355.4 17.5 154 123-280 3-161 (178)
8 3j21_F 50S ribosomal protein L 100.0 9.5E-47 3.2E-51 341.0 16.8 155 123-281 8-167 (184)
9 2zkr_e 60S ribosomal protein L 100.0 1.3E-46 4.4E-51 342.4 15.9 157 121-280 5-173 (192)
10 3iz5_F 60S ribosomal protein L 100.0 3E-45 1E-49 332.7 17.4 157 121-280 5-172 (190)
11 4a17_E RPL9, 60S ribosomal pro 100.0 9.9E-46 3.4E-50 335.4 13.7 156 122-280 6-171 (188)
12 3u5e_H L8, RP24, YL11, 60S rib 100.0 6.1E-45 2.1E-49 331.0 16.4 155 123-280 7-173 (191)
13 1sei_A Ribosomal protein S8; p 100.0 1.6E-42 5.6E-47 297.3 11.2 124 2-126 1-126 (130)
14 1s03_H 30S ribosomal protein S 100.0 5.2E-42 1.8E-46 293.8 10.5 123 2-126 1-125 (129)
15 2vqe_H 30S ribosomal protein S 100.0 4.5E-42 1.6E-46 297.0 9.2 124 2-126 1-134 (138)
16 3bbn_H Ribosomal protein S8; s 100.0 1.3E-41 4.5E-46 292.8 11.5 123 3-126 2-130 (134)
17 3rf2_A 30S ribosomal protein S 100.0 1.7E-41 5.8E-46 301.0 8.9 126 1-126 1-164 (168)
18 1i6u_A 30S ribosomal protein S 100.0 1.4E-36 4.9E-41 260.5 9.1 117 1-126 1-126 (130)
19 2xzm_H Ribosomal protein S8 co 100.0 6.6E-37 2.2E-41 262.5 6.8 117 1-126 1-126 (130)
20 3r8s_O 50S ribosomal protein L 100.0 7E-35 2.4E-39 244.9 10.6 95 276-374 21-116 (116)
21 3bbo_Q Ribosomal protein L18; 100.0 2.5E-35 8.5E-40 258.6 5.8 103 270-374 58-161 (161)
22 3u5c_W 40S ribosomal protein S 100.0 7.8E-35 2.7E-39 249.7 8.3 117 1-126 1-126 (130)
23 3v2d_S 50S ribosomal protein L 100.0 7.2E-34 2.5E-38 236.6 8.1 89 277-374 23-112 (112)
24 1ovy_A 50S ribosomal protein L 100.0 1.7E-33 5.9E-38 237.3 6.1 99 270-374 21-120 (120)
25 2zjr_L 50S ribosomal protein L 100.0 4.6E-32 1.6E-36 226.4 3.5 90 275-374 24-114 (114)
26 1vq8_N 50S ribosomal protein L 100.0 2.1E-29 7.3E-34 226.5 11.8 95 276-374 31-130 (187)
27 3j21_O 50S ribosomal protein L 99.9 7.2E-29 2.5E-33 225.5 6.7 96 276-374 31-131 (203)
28 2zkr_n 60S ribosomal protein L 99.9 1.4E-24 4.6E-29 205.4 12.5 95 276-374 47-173 (297)
29 2cql_A OK/SW-CL.103, 60S ribos 99.9 1.5E-24 5.3E-29 177.8 8.4 86 118-203 8-98 (100)
30 3u5e_D 60S ribosomal protein L 99.9 7.3E-22 2.5E-26 187.1 10.6 95 276-374 47-173 (297)
31 4a17_M RPL5, 60S ribosomal pro 99.9 1.3E-21 4.6E-26 185.3 11.2 99 272-374 42-173 (301)
32 3iz5_Q 60S ribosomal protein L 99.8 2.4E-19 8.1E-24 169.9 8.5 92 276-374 51-173 (304)
33 2vqe_K 30S ribosomal protein S 96.9 0.0033 1.1E-07 53.2 8.2 88 277-373 16-104 (129)
34 3r8n_K 30S ribosomal protein S 96.7 0.0031 1.1E-07 52.5 6.9 88 277-373 6-94 (117)
35 3j20_M 30S ribosomal protein S 96.5 0.016 5.4E-07 49.5 9.6 90 277-373 14-111 (137)
36 3bbn_K Ribosomal protein S11; 96.3 0.0034 1.2E-07 53.8 4.4 88 277-373 29-117 (140)
37 2xzm_K RPS14E; ribosome, trans 96.1 0.011 3.7E-07 51.3 6.7 91 277-373 28-125 (151)
38 3u5c_O RP59A, 40S ribosomal pr 95.7 0.0083 2.8E-07 51.2 4.2 91 277-373 14-111 (137)
39 4fei_A Heat shock protein-rela 58.7 16 0.00056 28.4 5.5 44 129-172 29-92 (102)
40 3q9p_A Heat shock protein beta 56.8 27 0.00094 26.3 6.3 44 129-172 20-82 (85)
41 3gla_A Low molecular weight he 56.5 26 0.0009 26.9 6.3 44 129-172 27-95 (100)
42 2cql_A OK/SW-CL.103, 60S ribos 46.4 13 0.00044 29.6 2.9 49 231-303 16-65 (100)
43 4eld_A MJ16.5-P1, small heat s 46.2 33 0.0011 29.0 5.7 44 129-172 79-148 (161)
44 2wj5_A Heat shock protein beta 43.7 51 0.0017 25.6 6.1 44 129-172 24-86 (101)
45 2y1y_A Alpha-crystallin B chai 42.3 50 0.0017 24.9 5.7 44 129-172 19-81 (90)
46 3l1e_A Alpha-crystallin A chai 39.6 61 0.0021 25.4 6.0 44 129-172 25-87 (106)
47 4fnq_A Alpha-galactosidase AGA 38.9 35 0.0012 36.2 5.7 40 335-374 351-408 (729)
48 1vq8_E 50S ribosomal protein L 37.6 24 0.00081 31.0 3.5 28 120-147 108-138 (178)
49 3clk_A Transcription regulator 35.7 53 0.0018 29.2 5.7 43 332-374 113-158 (290)
50 3aab_A Putative uncharacterize 35.5 70 0.0024 25.5 5.9 44 129-172 47-113 (123)
51 2qu7_A Putative transcriptiona 34.6 47 0.0016 29.4 5.2 44 331-374 109-155 (288)
52 1byk_A Protein (trehalose oper 32.7 79 0.0027 27.3 6.2 43 331-373 102-148 (255)
53 3qi7_A Putative transcriptiona 32.1 40 0.0014 32.9 4.5 44 331-374 143-191 (371)
54 3u5e_H L8, RP24, YL11, 60S rib 31.9 32 0.0011 30.5 3.4 23 125-147 125-150 (191)
55 3qk7_A Transcriptional regulat 31.6 58 0.002 29.1 5.3 43 332-374 114-159 (294)
56 2zqe_A MUTS2 protein; alpha/be 31.6 1E+02 0.0034 23.2 5.8 62 5-66 16-82 (83)
57 3cs3_A Sugar-binding transcrip 31.1 53 0.0018 28.9 4.9 42 332-373 106-150 (277)
58 3hcw_A Maltose operon transcri 31.1 52 0.0018 29.5 4.8 42 332-373 119-163 (295)
59 2klr_A Alpha-crystallin B chai 30.9 65 0.0022 27.9 5.2 44 129-172 86-148 (175)
60 1rl6_A Protein (ribosomal prot 30.7 36 0.0012 29.7 3.5 28 120-147 105-136 (177)
61 4h41_A Putative alpha-L-fucosi 30.5 33 0.0011 33.2 3.4 39 336-374 60-116 (340)
62 3k4h_A Putative transcriptiona 30.2 79 0.0027 27.9 5.9 44 331-374 118-164 (292)
63 2h0a_A TTHA0807, transcription 30.1 83 0.0028 27.4 6.0 43 332-374 102-152 (276)
64 2fvy_A D-galactose-binding per 29.6 90 0.0031 27.7 6.2 52 322-373 110-172 (309)
65 3kke_A LACI family transcripti 29.4 75 0.0026 28.5 5.7 44 331-374 118-164 (303)
66 3d8u_A PURR transcriptional re 29.3 79 0.0027 27.6 5.7 43 332-374 108-153 (275)
67 3gv0_A Transcriptional regulat 29.1 85 0.0029 27.8 5.9 43 331-373 114-159 (288)
68 3gyb_A Transcriptional regulat 28.9 80 0.0027 27.7 5.7 44 331-374 105-149 (280)
69 3b09_A Peptidyl-prolyl CIS-tra 28.7 39 0.0013 26.1 3.0 21 326-346 31-51 (88)
70 3bbl_A Regulatory protein of L 28.7 64 0.0022 28.7 5.0 47 324-374 109-158 (287)
71 3tb6_A Arabinose metabolism tr 28.5 70 0.0024 28.2 5.2 44 331-374 124-169 (298)
72 3j21_F 50S ribosomal protein L 28.5 2.4E+02 0.0084 24.5 8.6 57 133-194 100-159 (184)
73 3egc_A Putative ribose operon 28.3 81 0.0028 27.9 5.6 44 331-374 112-158 (291)
74 3g85_A Transcriptional regulat 28.0 78 0.0027 27.9 5.4 44 331-374 114-160 (289)
75 1dbq_A Purine repressor; trans 28.0 84 0.0029 27.6 5.6 43 332-374 114-159 (289)
76 3brq_A HTH-type transcriptiona 27.4 88 0.003 27.5 5.7 43 332-374 127-172 (296)
77 1y81_A Conserved hypothetical 27.4 66 0.0022 26.4 4.4 34 336-374 86-119 (138)
78 2hgc_A YJCQ protein; SR346, st 26.7 25 0.00087 28.1 1.6 47 5-53 5-53 (102)
79 2fep_A Catabolite control prot 26.6 83 0.0028 28.0 5.4 47 324-374 117-167 (289)
80 3miz_A Putative transcriptiona 26.2 70 0.0024 28.5 4.8 44 331-374 118-164 (301)
81 3ff4_A Uncharacterized protein 26.0 55 0.0019 26.5 3.6 34 335-373 74-107 (122)
82 3fwz_A Inner membrane protein 26.0 68 0.0023 25.7 4.2 24 330-353 17-40 (140)
83 1nkw_E 50S ribosomal protein L 25.7 43 0.0015 30.2 3.1 31 120-150 133-167 (212)
84 2w4l_A DCMP deaminse, deoxycyt 25.5 63 0.0022 28.0 4.1 39 335-374 110-149 (178)
85 3k9c_A Transcriptional regulat 25.5 92 0.0031 27.7 5.5 42 332-373 114-157 (289)
86 2bol_A TSP36, small heat shock 25.4 1.2E+02 0.004 28.8 6.3 22 235-257 247-268 (314)
87 3huu_A Transcription regulator 25.3 84 0.0029 28.1 5.2 44 331-374 131-177 (305)
88 2zjr_E 50S ribosomal protein L 25.2 38 0.0013 29.8 2.6 28 120-147 106-137 (185)
89 2zkr_e 60S ribosomal protein L 25.1 47 0.0016 29.4 3.2 23 125-147 125-150 (192)
90 3c3k_A Alanine racemase; struc 25.1 1E+02 0.0034 27.3 5.6 43 332-374 112-157 (285)
91 3dbi_A Sugar-binding transcrip 25.1 1.1E+02 0.0036 28.0 5.9 44 331-374 168-214 (338)
92 2jui_A PLNE; ampiphilic alpha 23.8 42 0.0014 20.6 1.8 20 349-368 1-20 (33)
93 3r8s_G 50S ribosomal protein L 23.2 59 0.002 28.3 3.4 28 120-147 105-136 (176)
94 1qpz_A PURA, protein (purine n 22.8 1.2E+02 0.004 27.8 5.7 47 324-374 161-210 (340)
95 3v2d_H 50S ribosomal protein L 22.8 44 0.0015 29.2 2.6 28 120-147 106-137 (180)
96 3e61_A Putative transcriptiona 22.6 81 0.0028 27.6 4.4 43 331-373 109-154 (277)
97 3rot_A ABC sugar transporter, 22.3 1.1E+02 0.0036 27.3 5.2 44 331-374 115-163 (297)
98 2o20_A Catabolite control prot 22.3 1.3E+02 0.0044 27.4 5.9 43 332-374 168-213 (332)
99 3e3m_A Transcriptional regulat 22.1 99 0.0034 28.5 5.1 44 331-374 174-221 (355)
100 4acy_A Endo-alpha-mannosidase; 22.0 40 0.0014 33.0 2.4 39 336-374 109-149 (382)
101 2d59_A Hypothetical protein PH 21.9 64 0.0022 26.5 3.3 35 334-373 92-126 (144)
102 3llv_A Exopolyphosphatase-rela 21.7 1.2E+02 0.0039 24.0 4.8 24 330-353 16-39 (141)
103 3ctp_A Periplasmic binding pro 21.6 1.2E+02 0.004 27.6 5.5 43 332-374 160-205 (330)
104 2duw_A Putative COA-binding pr 21.4 56 0.0019 26.9 2.9 33 337-374 88-120 (145)
105 2rgy_A Transcriptional regulat 21.2 1.1E+02 0.0038 27.0 5.1 48 323-374 111-161 (290)
106 2hsg_A Glucose-resistance amyl 21.0 1.1E+02 0.0038 27.7 5.2 43 332-374 165-211 (332)
107 1gme_A Heat shock protein 16.9 20.9 1.1E+02 0.0038 25.4 4.7 44 129-172 66-135 (151)
108 2jwk_A Protein TOLR; periplasm 20.9 2.1E+02 0.0073 19.9 5.7 28 346-373 47-74 (74)
109 3m0z_A Putative aldolase; MCSG 20.7 1.3E+02 0.0045 27.6 5.3 101 255-372 80-188 (249)
110 3gbv_A Putative LACI-family tr 20.4 1.1E+02 0.0039 26.8 5.0 43 332-374 121-172 (304)
111 3bbo_I Ribosomal protein L6; l 20.3 41 0.0014 30.6 1.9 28 120-147 149-180 (223)
112 1iuk_A Hypothetical protein TT 20.2 70 0.0024 26.2 3.2 34 336-374 87-120 (140)
No 1
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=1.2e-58 Score=416.80 Aligned_cols=167 Identities=41% Similarity=0.639 Sum_probs=158.6
Q ss_pred ccCCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceeccc
Q psy8860 119 RSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTK 198 (374)
Q Consensus 119 ~~ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt~ 198 (374)
||+|++||.||+||+|+++++.|+|+||+|+|+++|++.+++..+++.+.++.|+++++++|+|||+||||+|||+|||+
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~ 80 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEEEEEEeCcEEEEEecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCce
Q psy8860 199 GFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGIN 278 (374)
Q Consensus 199 Gf~~~L~lvGvGyr~~~~g~~L~l~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgkg 278 (374)
||+++|+++|+||||+++|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+|||||||||||
T Consensus 81 Gf~~~L~lvGvGyra~~~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~Vgq~AA~Ir~~R~PepYKGKG 160 (177)
T 1rl6_A 81 GYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKG 160 (177)
T ss_dssp CEEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCE
T ss_pred CcEEEEEEEeeceEEEecCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecc
Q psy8860 279 RLMVHRT 285 (374)
Q Consensus 279 iL~V~eS 285 (374)
|+|.+|.
T Consensus 161 I~y~~E~ 167 (177)
T 1rl6_A 161 IRYEGEL 167 (177)
T ss_dssp EEETTCC
T ss_pred EeECCeE
Confidence 9998874
No 2
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=4.1e-58 Score=414.45 Aligned_cols=167 Identities=32% Similarity=0.581 Sum_probs=163.2
Q ss_pred cccCCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecc
Q psy8860 118 ARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVT 197 (374)
Q Consensus 118 a~~ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt 197 (374)
|||+|++||.||+||+|+++++.|+|+||+|+|+++|++.+++.++++.|.++.|+++++++|+|||+||||+|||+|||
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 80 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCTTSEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCCCEEEEEECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEEEEEEEeCcEEEEEecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCc
Q psy8860 198 KGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGI 277 (374)
Q Consensus 198 ~Gf~~~L~lvGvGyr~~~~g~~L~l~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgk 277 (374)
+||+++|+++|+||||.++|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||+|||||||
T Consensus 81 ~Gf~~kL~lvgvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGK 160 (180)
T 3v2d_H 81 EGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK 160 (180)
T ss_dssp TCEEEEEEEESTTCEEEEETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHHHHHHHHHHHHHHTCCCSSSSC
T ss_pred CCcEEEEEEEEEeeEEEECCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHhcccCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeec
Q psy8860 278 NRLMVHR 284 (374)
Q Consensus 278 giL~V~e 284 (374)
||+|.++
T Consensus 161 GIry~~e 167 (180)
T 3v2d_H 161 GIYYAGE 167 (180)
T ss_dssp EEEETTC
T ss_pred cccCCCE
Confidence 9999554
No 3
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=8.7e-58 Score=419.52 Aligned_cols=170 Identities=32% Similarity=0.592 Sum_probs=166.2
Q ss_pred cccccCCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhccee
Q psy8860 116 RKARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIG 195 (374)
Q Consensus 116 ~ea~~ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~G 195 (374)
..|+|||++||.||+||+|+++++.|+|+||+|+|+++|++.+++.++++.+.|+.|+++++++|+|||+||||+|||+|
T Consensus 26 ~~MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~G 105 (212)
T 1nkw_E 26 DNMSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKG 105 (212)
T ss_pred cccccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEe
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEEEEEEEEeCcEEEEEecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcC
Q psy8860 196 VTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYK 275 (374)
Q Consensus 196 Vt~Gf~~~L~lvGvGyr~~~~g~~L~l~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYk 275 (374)
||+||+++|+++|+||||+++|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||||||||
T Consensus 106 Vt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~VGq~AA~IR~~R~PEPYK 185 (212)
T 1nkw_E 106 VSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYH 185 (212)
T ss_pred eccCeEEEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeeeeecc
Q psy8860 276 GINRLMVHRT 285 (374)
Q Consensus 276 gkgiL~V~eS 285 (374)
||||+|.+|.
T Consensus 186 GKGIry~~E~ 195 (212)
T 1nkw_E 186 GKGVRFVGEQ 195 (212)
T ss_pred CCcEeECCeE
Confidence 9999999873
No 4
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=1.1e-58 Score=416.76 Aligned_cols=167 Identities=43% Similarity=0.743 Sum_probs=164.3
Q ss_pred ccCCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceeccc
Q psy8860 119 RSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTK 198 (374)
Q Consensus 119 ~~ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt~ 198 (374)
||+|++||.||+||+|+++++.|+|+||+|+|+++|++.+++.++++.+.++.|+++++++|+|||+||||+|||+|||+
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 80 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCSSCEEEEETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCCCEEEEEeCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEEEEEEeCcEEEEEecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCce
Q psy8860 199 GFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGIN 278 (374)
Q Consensus 199 Gf~~~L~lvGvGyr~~~~g~~L~l~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgkg 278 (374)
||+++|+++|+||||+++|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+|||||||||||
T Consensus 81 Gf~~kL~lvgvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGKG 160 (176)
T 3r8s_G 81 GFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKG 160 (176)
T ss_dssp CEEECEEEESTTCEEECSSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHHHHHHHHHHHHHTTCCCSSSCCE
T ss_pred CeEEEEEEeeeeeEEEeCCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHhhccCCCCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecc
Q psy8860 279 RLMVHRT 285 (374)
Q Consensus 279 iL~V~eS 285 (374)
|+|.+|.
T Consensus 161 I~y~~E~ 167 (176)
T 3r8s_G 161 VRYADEV 167 (176)
T ss_dssp EEESSCC
T ss_pred eeECCeE
Confidence 9998875
No 5
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.2e-58 Score=422.64 Aligned_cols=169 Identities=38% Similarity=0.679 Sum_probs=165.5
Q ss_pred ccccCCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCCCeEE-EEeCCEEEEEEcCCchhHHHHHHHHHHHHhhccee
Q psy8860 117 KARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNI-KNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIG 195 (374)
Q Consensus 117 ea~~ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~~v~i-~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~G 195 (374)
.|+|||++||.||+||+|+++++.|+|+||+|+|+++|++.+++ .++++.+.++.|+++++++|+|||+||||+|||+|
T Consensus 42 ~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~G 121 (223)
T 3bbo_I 42 KESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVG 121 (223)
T ss_dssp CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHH
T ss_pred ccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEEe
Confidence 48999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEEEEEEEEeCcEEEEEecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcC
Q psy8860 196 VTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYK 275 (374)
Q Consensus 196 Vt~Gf~~~L~lvGvGyr~~~~g~~L~l~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYk 275 (374)
||+||+++|+++|+||||+++|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||||||||
T Consensus 122 Vt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiDKq~Vgq~AA~IR~~R~PEPYK 201 (223)
T 3bbo_I 122 VSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYK 201 (223)
T ss_dssp TTTCEEECEECCSTTCCEEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHHHHTTSSSCCCTTT
T ss_pred eccCcEEEEEEeeeceEEEecCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cceeeeeecc
Q psy8860 276 GINRLMVHRT 285 (374)
Q Consensus 276 gkgiL~V~eS 285 (374)
||||+|.+|.
T Consensus 202 GKGI~y~~E~ 211 (223)
T 3bbo_I 202 GKGVKYSDEI 211 (223)
T ss_dssp CCSCEETTCC
T ss_pred CCcEeECCeE
Confidence 9999998874
No 6
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=7.2e-59 Score=420.28 Aligned_cols=168 Identities=32% Similarity=0.598 Sum_probs=161.1
Q ss_pred cccCCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecc
Q psy8860 118 ARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVT 197 (374)
Q Consensus 118 a~~ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt 197 (374)
|||+|+.||.||+||+|+++++.|+|+||+|+|+++|++.+++..+++.+.++.|+++++++|+|||+||||+|||+|||
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt 80 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 80 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEEEEEEEeCcEEEEEecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCc
Q psy8860 198 KGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGI 277 (374)
Q Consensus 198 ~Gf~~~L~lvGvGyr~~~~g~~L~l~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgk 277 (374)
+||+++|+++|+||||+++|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.||||||+||+||||||||||
T Consensus 81 ~Gf~kkL~lvGvGYra~~~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~Vgq~AA~Ir~~R~PepYKGK 160 (185)
T 2zjr_E 81 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK 160 (185)
T ss_dssp HCEEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred cCcEEEEEEeeeccEEEEcCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHHHHHHHHHHhccCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecc
Q psy8860 278 NRLMVHRT 285 (374)
Q Consensus 278 giL~V~eS 285 (374)
||+|.+|.
T Consensus 161 GI~y~~E~ 168 (185)
T 2zjr_E 161 GVRFVGEQ 168 (185)
T ss_dssp BCCCSSCC
T ss_pred cEeECCeE
Confidence 99999874
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=2.8e-49 Score=355.40 Aligned_cols=154 Identities=23% Similarity=0.340 Sum_probs=149.8
Q ss_pred cceeecCCCeEEEEeccEEEEEeCCeEEEEEc-CCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecccceE
Q psy8860 123 KMPIFIPPNVEVTLNSNKITLKGPLGILKQNK-NNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGFE 201 (374)
Q Consensus 123 ~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l-~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt~Gf~ 201 (374)
.+||.||+||+|+++++.|+|+||+|+|+++| ++.+++.++++.+.++.|+++|+++|+|||+||||+|||+|||+||+
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~ 82 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWE 82 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccCeE
Confidence 47999999999999999999999999999999 67899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEE--EEEEeCcEEEE--EecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCc
Q psy8860 202 KKLQLIGVGF--RAKIEKNYLNL--ILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGI 277 (374)
Q Consensus 202 ~~L~lvGvGy--r~~~~g~~L~l--~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgk 277 (374)
++|+++|+|| ||.++|+.|.+ +||||||+.++||+||++++++ |+|+|+|+|||+||||||+||++||| |||
T Consensus 83 ~~L~ivGvGypira~~~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G~Dkq~Vgq~AA~Ir~~r~p---KGK 158 (178)
T 1vq8_E 83 YGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTRI---NDK 158 (178)
T ss_dssp EEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHHHHHHHHTTCC---SSS
T ss_pred EEEEEEeeCCceEEEEcCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEECCHHHHHHHHHHHhccCCC---CCC
Confidence 9999999999 89999999998 9999999999999999999998 89999999999999999999999999 999
Q ss_pred eee
Q psy8860 278 NRL 280 (374)
Q Consensus 278 giL 280 (374)
||+
T Consensus 159 GIr 161 (178)
T 1vq8_E 159 DVR 161 (178)
T ss_dssp CTT
T ss_pred cee
Confidence 986
No 8
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.5e-47 Score=341.00 Aligned_cols=155 Identities=30% Similarity=0.410 Sum_probs=148.5
Q ss_pred cceeecCCCeEEEEeccEEEEEeCCeEEEEEcC-CCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecccceE
Q psy8860 123 KMPIFIPPNVEVTLNSNKITLKGPLGILKQNKN-NLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGFE 201 (374)
Q Consensus 123 ~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~-~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt~Gf~ 201 (374)
..||.||+||+|+++++.|+||||+|+|+++|+ +.+++..+++.+.++.|+++|+++|+|||+||||+|||+|||+||+
T Consensus 8 ~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~ 87 (184)
T 3j21_F 8 REEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGFT 87 (184)
T ss_dssp EEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred eEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCeE
Confidence 579999999999999999999999999999996 6899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEE--EEEEeCcEEEE--EecceeeEEEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCc
Q psy8860 202 KKLQLIGVGF--RAKIEKNYLNL--ILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGI 277 (374)
Q Consensus 202 ~~L~lvGvGy--r~~~~g~~L~l--~LG~Sh~i~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgk 277 (374)
|+|+++|+|| +|.++|+.|.+ +||||||+.++||+||+++++++ +|+|+|+|||.|||+||+||++++ ||||
T Consensus 88 ~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~Dke~Vgq~AA~Ir~~~~---vK~K 163 (184)
T 3j21_F 88 YKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGIDKEAVGQTAANIEQATR---ITKW 163 (184)
T ss_dssp EEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESCHHHHHHHHHHHHHHHC---CCSS
T ss_pred EEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECCHHHHHHHHHHHhhccc---cCCC
Confidence 9999999999 89999999865 79999999999999999999986 999999999999999999999995 9999
Q ss_pred eeee
Q psy8860 278 NRLM 281 (374)
Q Consensus 278 giL~ 281 (374)
+++.
T Consensus 164 DiR~ 167 (184)
T 3j21_F 164 DRRI 167 (184)
T ss_dssp CSSS
T ss_pred cccE
Confidence 8765
No 9
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.3e-46 Score=342.45 Aligned_cols=157 Identities=24% Similarity=0.340 Sum_probs=145.1
Q ss_pred CCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCC-CeEEEEeCCE---EEEEEcCCchhHHHHHHHHHHHHhhcceec
Q psy8860 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNN-LVNIKNDSNV---LYFTAINNSRIAKSMSGTMRSIINNMIIGV 196 (374)
Q Consensus 121 ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~-~v~i~~~~~~---l~i~~~~~~k~~~a~~gT~rsli~Nmi~GV 196 (374)
..+.||.||+||+|+++++.|+|+||+|+|+++|++ .+++..+++. +.++.|+++++++|+|||+||||+|||+||
T Consensus 5 ~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~GV 84 (192)
T 2zkr_e 5 LSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGV 84 (192)
T ss_dssp -----CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEee
Confidence 357899999999999999999999999999999998 8999999999 999999999999999999999999999999
Q ss_pred ccceEEEEEEEEEEEEEE--E--eCcEEEE--EecceeeEEEeCCCCcEEEcccC--CEEEEEecchhhhhhHHHHHHhh
Q psy8860 197 TKGFEKKLQLIGVGFRAK--I--EKNYLNL--ILGFSHPILYKIPFDIICETPSQ--TEILIKGINKQAVGHVAAEIRRY 268 (374)
Q Consensus 197 t~Gf~~~L~lvGvGyr~~--~--~g~~L~l--~LG~Sh~i~~~IP~gV~v~~~~~--t~I~l~G~dke~Vgq~Aa~Ir~~ 268 (374)
|+||+++|+++|+||||+ + +|+.|.+ +||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||++
T Consensus 85 t~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA~IR~~ 164 (192)
T 2zkr_e 85 TLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQA 164 (192)
T ss_dssp HTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 999999999999999987 7 6888988 99999999999999999999987 99999999999999999999999
Q ss_pred cCCCCcCCceee
Q psy8860 269 YKPEPYKGINRL 280 (374)
Q Consensus 269 r~pepYkgkgiL 280 (374)
|++ |+|.++
T Consensus 165 ~~v---k~kD~R 173 (192)
T 2zkr_e 165 TTV---KNKDIR 173 (192)
T ss_dssp TCC---SSSCTT
T ss_pred CcC---CCCCcc
Confidence 987 676653
No 10
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=3e-45 Score=332.74 Aligned_cols=157 Identities=21% Similarity=0.279 Sum_probs=146.6
Q ss_pred CCcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCC-CeEEEE--eCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecc
Q psy8860 121 MGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNN-LVNIKN--DSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVT 197 (374)
Q Consensus 121 ig~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~-~v~i~~--~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt 197 (374)
..++||.||+||+|+++++.|+||||+|+|+++|+| .+++.+ +++.+.++.|+++|+++|+|||+||||+|||+|||
T Consensus 5 ~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 84 (190)
T 3iz5_F 5 LASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVT 84 (190)
T ss_dssp CCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhheeeec
Confidence 356899999999999999999999999999999974 799998 89999999999999999999999999999999999
Q ss_pred cceEEEEEEEEEEEEEEE----eCcEEEE--EecceeeEEEeCCCCcEEEcccC--CEEEEEecchhhhhhHHHHHHhhc
Q psy8860 198 KGFEKKLQLIGVGFRAKI----EKNYLNL--ILGFSHPILYKIPFDIICETPSQ--TEILIKGINKQAVGHVAAEIRRYY 269 (374)
Q Consensus 198 ~Gf~~~L~lvGvGyr~~~----~g~~L~l--~LG~Sh~i~~~IP~gV~v~~~~~--t~I~l~G~dke~Vgq~Aa~Ir~~r 269 (374)
+||+|+|+++|+|||+.+ +|+.|.+ |||||||+.++||+||+++++++ |+|+|+|+|||.||||||+||+.+
T Consensus 85 ~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq~~ 164 (190)
T 3iz5_F 85 KGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC 164 (190)
T ss_dssp TCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHhhc
Confidence 999999999999999665 6898877 59999999999999999999987 799999999999999999999999
Q ss_pred CCCCcCCceee
Q psy8860 270 KPEPYKGINRL 280 (374)
Q Consensus 270 ~pepYkgkgiL 280 (374)
.+|+|.++
T Consensus 165 ---~vk~kD~R 172 (190)
T 3iz5_F 165 ---HVKNKDIR 172 (190)
T ss_dssp ---CCCSSCTT
T ss_pred ---cccCCccc
Confidence 47887654
No 11
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=9.9e-46 Score=335.38 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=146.2
Q ss_pred CcceeecCCCeEEEEeccEEEEEeCCeEEEEEcCC-CeEEEE-eCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecccc
Q psy8860 122 GKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNN-LVNIKN-DSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKG 199 (374)
Q Consensus 122 g~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~-~v~i~~-~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt~G 199 (374)
...||.||+||+|+++++.|+||||+|+|+++|++ .+++.+ +++.+.++.|+++|+++|+|||+||||+|||+|||+|
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (188)
T 4a17_E 6 TEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEG 85 (188)
T ss_dssp EEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccC
Confidence 35799999999999999999999999999999987 799998 8999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEEEEEE--E--eCcEEEE--EecceeeEEEeCCCCcEEEcccC--CEEEEEecchhhhhhHHHHHHhhcCC
Q psy8860 200 FEKKLQLIGVGFRAK--I--EKNYLNL--ILGFSHPILYKIPFDIICETPSQ--TEILIKGINKQAVGHVAAEIRRYYKP 271 (374)
Q Consensus 200 f~~~L~lvGvGyr~~--~--~g~~L~l--~LG~Sh~i~~~IP~gV~v~~~~~--t~I~l~G~dke~Vgq~Aa~Ir~~r~p 271 (374)
|+|+|+++|+|||+. + +|+.|.+ +||||||+.++||+||+++++++ |+|+|+|+|||.|||+||+||+.+
T Consensus 86 f~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~-- 163 (188)
T 4a17_E 86 YKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSC-- 163 (188)
T ss_dssp EEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHT--
T ss_pred eEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhc--
Confidence 999999999999955 4 6888877 79999999999999999999988 899999999999999999999999
Q ss_pred CCcCCceee
Q psy8860 272 EPYKGINRL 280 (374)
Q Consensus 272 epYkgkgiL 280 (374)
.+|+|.++
T Consensus 164 -~vk~kD~R 171 (188)
T 4a17_E 164 -LVKEKDIR 171 (188)
T ss_dssp -CCCSSCHH
T ss_pred -ccCCCccc
Confidence 57887654
No 12
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=6.1e-45 Score=330.98 Aligned_cols=155 Identities=23% Similarity=0.368 Sum_probs=145.1
Q ss_pred cceeecCCCeEEEEeccEEEEEeCCeEEEEEcCC-CeEEE-EeCCEEEEEEcCCchhHHHHHHHHHHHHhhcceecccce
Q psy8860 123 KMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNN-LVNIK-NDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGF 200 (374)
Q Consensus 123 ~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~~-~v~i~-~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~GVt~Gf 200 (374)
..||.||+||+|+++++.|+||||+|+|+++|++ .+++. .+++.+.++.|+++|+++|+|||+||||+|||+|||+||
T Consensus 7 ~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf 86 (191)
T 3u5e_H 7 EQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGY 86 (191)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred cccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccCE
Confidence 5799999999999999999999999999999997 68888 789999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEE--EEE----eCcEEEE--EecceeeEEEeCCCCcEEEcccC--CEEEEEecchhhhhhHHHHHHhhcC
Q psy8860 201 EKKLQLIGVGFR--AKI----EKNYLNL--ILGFSHPILYKIPFDIICETPSQ--TEILIKGINKQAVGHVAAEIRRYYK 270 (374)
Q Consensus 201 ~~~L~lvGvGyr--~~~----~g~~L~l--~LG~Sh~i~~~IP~gV~v~~~~~--t~I~l~G~dke~Vgq~Aa~Ir~~r~ 270 (374)
+|+|+++|+||| |.+ +|+.|.+ +||||||+.++||+||+++++++ |+|+|+|+|||.|||+||+||+.+
T Consensus 87 ~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~- 165 (191)
T 3u5e_H 87 KYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQIC- 165 (191)
T ss_dssp EEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhc-
Confidence 999999999999 667 7888887 69999999999999999999986 999999999999999999999988
Q ss_pred CCCcCCceee
Q psy8860 271 PEPYKGINRL 280 (374)
Q Consensus 271 pepYkgkgiL 280 (374)
..|+|.++
T Consensus 166 --~vk~kD~R 173 (191)
T 3u5e_H 166 --RVRNKDIR 173 (191)
T ss_dssp --CCCSSCTT
T ss_pred --ccCCCccc
Confidence 46776643
No 13
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=100.00 E-value=1.6e-42 Score=297.29 Aligned_cols=124 Identities=48% Similarity=0.804 Sum_probs=117.3
Q ss_pred CCcchHHHHHHhhhhhhccCCceEEeecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEeecCcceeeeeeeec
Q psy8860 2 SMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKRVS 81 (374)
Q Consensus 2 ~~~d~iad~lt~IrNa~~a~~~~v~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY~~~~pvi~~~~~iS 81 (374)
+|+|||||||||||||++++|.+|.+|+||++.+||++|++||||++|++.++ +.+++|||+|||++++|||+.++|||
T Consensus 1 ~~~d~iad~lt~IrNA~~~~~~~v~iP~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~v~Lky~~~~~vI~~i~rIS 79 (130)
T 1sei_A 1 VMTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIED-NKQGILRIFLKYGPNERVITGLKRIS 79 (130)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEEES-SSCEEEEEEECBSSSSBSCCCEEECC
T ss_pred CccChHHHHHHHhHHHHHcCCCEEEecCcHHHHHHHHHHHHCCCceeEEEEec-CCccEEEEEEecCCCCcceeeeEEEc
Confidence 47899999999999999999999999999999999999999999999999875 45679999999998999999999999
Q ss_pred cCCCcccccCCCcccccCCceEEEEEcCCcccccccccc--CCccee
Q psy8860 82 RPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 82 kP~~Rvy~~~~~l~~~~~g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
|||+|+|++.++||+|++|+|++|||||+|||||+||++ +|++.+
T Consensus 80 kPg~R~y~~~~~l~~v~~g~Gi~IlSTskGimt~~eAr~~~vGGevL 126 (130)
T 1sei_A 80 KPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEII 126 (130)
T ss_dssp BTTBCCEECGGGCCCCCTTSCEEEEEETTEEEEHHHHHHHTCCEEEE
T ss_pred CCCCeeEcCHHHHHHHhCCCeEEEEECCcccccHHHHHHcCCCcEEE
Confidence 999999999999999999999999999999999999985 777654
No 14
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=100.00 E-value=5.2e-42 Score=293.78 Aligned_cols=123 Identities=58% Similarity=0.956 Sum_probs=114.3
Q ss_pred CCcchHHHHHHhhhhhhccCCceEEeecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEeecCcceeeeeeeec
Q psy8860 2 SMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKRVS 81 (374)
Q Consensus 2 ~~~d~iad~lt~IrNa~~a~~~~v~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY~~~~pvi~~~~~iS 81 (374)
+|+|||||||||||||++++|.+|.+|+||++.+||++|++||||++|++ ++ ..+++|||+|||.+++|||+.++|||
T Consensus 1 ~~~d~iad~lt~IrNA~~~~~~~v~iP~Sk~~~~il~iL~~eGyI~~~~~-~~-~~~~~i~v~Lky~~~~~vI~~i~rIS 78 (129)
T 1s03_H 1 SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKV-EG-DTKPELELTLKYFQGKAVVESIQRVS 78 (129)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEE-EC-SSSCEEEEEECBSSSSBSCSCEEECS
T ss_pred CCcChHHHHHHHhHHHHHcCCCEEEEeCcHHHHHHHHHHHHCCcceeEEE-cC-CCceEEEEEEecCCCCcccccceEEc
Confidence 36899999999999999999999999999999999999999999999998 43 44669999999988899999999999
Q ss_pred cCCCcccccCCCcccccCCceEEEEEcCCcccccccccc--CCccee
Q psy8860 82 RPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 82 kP~~Rvy~~~~~l~~~~~g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
|||+|+|++.+|||+|++|+|++|||||+|||||+||++ +|++.+
T Consensus 79 kPg~R~y~~~~~l~kv~~g~Gi~IlSTskGimt~~eAr~~~vGGevL 125 (129)
T 1s03_H 79 RPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEII 125 (129)
T ss_dssp BTTBCCEECGGGSCCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEE
T ss_pred CCCcceEcCHHHHHHHhCCceEEEEECCcccccHHHHHHcCCCcEEE
Confidence 999999999999999999999999999999999999985 777654
No 15
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=100.00 E-value=4.5e-42 Score=297.01 Aligned_cols=124 Identities=41% Similarity=0.696 Sum_probs=115.7
Q ss_pred CCcchHHHHHHhhhhhhccCCceEEeecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEe-ecC-------cce
Q psy8860 2 SMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKY-YMN-------RPV 73 (374)
Q Consensus 2 ~~~d~iad~lt~IrNa~~a~~~~v~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY-~~~-------~pv 73 (374)
.|+|||||||||||||++++|.+|.+|+||++.+||++|++||||++|++.++ +.+++|||+||| .++ +||
T Consensus 1 m~~d~iad~ltrIrNA~~~~k~~V~iP~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~v~Lky~~~~~~~~~~~~~v 79 (138)
T 2vqe_H 1 MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDV-DGKPYLRVYLKYGPRRQGPDPRPEQV 79 (138)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSCCCCBCCHHHHHHHHHHHHTTSSSEEEEEEE-TTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred CccchHHHHHHHhHHHHHcCCCEEEecCcHHHHHHHHHHHHcCcceeEEEEec-CCceEEEEEEecCcCCccccccCCcc
Confidence 15799999999999999999999999999999999999999999999998875 457799999999 566 799
Q ss_pred eeeeeeeccCCCcccccCCCcccccCCceEEEEEcCCcccccccccc--CCccee
Q psy8860 74 IECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 74 i~~~~~iSkP~~Rvy~~~~~l~~~~~g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
|+.++||||||+|+|++.+|||+|++|+|++|||||+|||||+||++ +|++.+
T Consensus 80 I~~ikriSkPg~Riy~~~~~lpkv~~g~Gi~IlSTskGimt~~eAr~~~vGGEvL 134 (138)
T 2vqe_H 80 IHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELI 134 (138)
T ss_dssp CSCEEECSBTTBCCEECGGGCCCGGGGTSEEEEEETTEEEEHHHHHHTTCCEEEE
T ss_pred ccccEEecCCCcceEeCHHHHHHHhCCceEEEEECCCCceeHHHHHHcCCCCEEE
Confidence 99999999999999999999999999999999999999999999985 777654
No 16
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.3e-41 Score=292.76 Aligned_cols=123 Identities=40% Similarity=0.590 Sum_probs=115.2
Q ss_pred CcchHHHHHHhhhhhhccCCceEEeecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEeecCcceee----eee
Q psy8860 3 MSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIE----CLK 78 (374)
Q Consensus 3 ~~d~iad~lt~IrNa~~a~~~~v~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY~~~~pvi~----~~~ 78 (374)
|+|||||||||||||++++|.+|.+|+||++.+||++|++||||++|++.++++. ++|||+|||.+++|||+ .++
T Consensus 2 ~~d~iad~lt~IrNA~~~~k~~V~iP~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky~~~~~vI~p~~~~ik 80 (134)
T 3bbn_H 2 GKDTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRHRRNKKGPYLNTFHLK 80 (134)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCBCCCSSSCCBSCSCEE
T ss_pred cccHHHHHHHHhHHHHHcCCCEEEEeCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEecCCCCceeeccccccE
Confidence 5799999999999999999999999999999999999999999999998874133 69999999988899999 999
Q ss_pred eeccCCCcccccCCCcccccCCceEEEEEcCCcccccccccc--CCccee
Q psy8860 79 RVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 79 ~iSkP~~Rvy~~~~~l~~~~~g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
||||||+|+|++.++||+|++|+|++|||||+|||||+||++ +|++.+
T Consensus 81 riSkPg~Riy~~~~~lpkv~~g~Gi~IlSTskGimt~~eAr~~~vGGevL 130 (134)
T 3bbn_H 81 RVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEIL 130 (134)
T ss_dssp ESSBTTBCCEECSSSCCCGGGTTSEEEEEESSSEECTTHHHHHTCCEEEE
T ss_pred EecCCCcceEcCHHHHHHHhCCceEEEEECCcccccHHHHHHcCCCcEEE
Confidence 999999999999999999999999999999999999999995 777654
No 17
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}
Probab=100.00 E-value=1.7e-41 Score=301.02 Aligned_cols=126 Identities=40% Similarity=0.641 Sum_probs=114.7
Q ss_pred CCCcchHHHHHHhhhhhhccCCceEEeecchhHHHHHHHHHhCCCcceEEEEeccC------------------------
Q psy8860 1 MSMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFK------------------------ 56 (374)
Q Consensus 1 M~~~d~iad~lt~IrNa~~a~~~~v~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~------------------------ 56 (374)
|+|+|||||||||||||++|+|.+|++|+||++.+||++|++||||++|++.++..
T Consensus 1 m~~~d~iad~lt~IrNA~~ar~~~v~iP~Skl~~~i~~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 80 (168)
T 3rf2_A 1 MSAVDPIADMFSAIKNAIMRRDDFLYVPSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRYL 80 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHHSSCCSSSHHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHHHCCCccceEEecCCccccccccccccccCCCcccccccc
Confidence 89999999999999999999999999999999999999999999999999987531
Q ss_pred ---------CeeEEEEEEEeecC---cceeeeeeeeccCCCcccccCCCcccccCCceEEEEEcCCcccccccccc--CC
Q psy8860 57 ---------NKFELKILLKYYMN---RPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARS--MG 122 (374)
Q Consensus 57 ---------~~~~i~v~LKY~~~---~pvi~~~~~iSkP~~Rvy~~~~~l~~~~~g~G~~ivSTs~Gvmt~~ea~~--ig 122 (374)
++++|||.|||+++ +|||+.++||||||||+|++.+|||+|++|+|++|||||+|||||+||++ +|
T Consensus 81 ~~~t~~n~~~~~~l~v~LKY~~~~~k~pvI~~lkrISKPg~Riy~~~~eLprv~~GlGi~IlSTskGImt~rEAr~~~vG 160 (168)
T 3rf2_A 81 KQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVKRGLGIAIVSTDAGVMTDHEARRMRKG 160 (168)
T ss_dssp HHHHHTTSTTCCEEEEEECBSSTTSCSBSCSCEEECSCSSSCCEECSTTCCCSGGGTSEEEEEETTEEEEHHHHHHTTCC
T ss_pred cccccccccccceEEEEEEeecCCCCCccccccEEecCCCceEEcCHHHHHHHHcCCcEEEEEcCCcceeHHHHHHhCCC
Confidence 56899999999743 89999999999999999999999999999999999999999999999985 77
Q ss_pred ccee
Q psy8860 123 KMPI 126 (374)
Q Consensus 123 ~~~I 126 (374)
++.+
T Consensus 161 GevL 164 (168)
T 3rf2_A 161 GEVI 164 (168)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 7654
No 18
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00 E-value=1.4e-36 Score=260.50 Aligned_cols=117 Identities=31% Similarity=0.456 Sum_probs=106.8
Q ss_pred CCCcchHHHHHHhhhhhhccCCceEEe-ecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEeecCcceeeeeee
Q psy8860 1 MSMSDPIADMLTYIRNGQIVNKKKIIM-PSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKR 79 (374)
Q Consensus 1 M~~~d~iad~lt~IrNa~~a~~~~v~~-p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY~~~~pvi~~~~~ 79 (374)
|+|+|||||||||||||++++|.+|.+ |+||++.+||++|++||||++|++.++ +.+++|||+|||. |+.+++
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~v~Lky~-----i~~~~~ 74 (130)
T 1i6u_A 1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIED-GRAGIFKVELIGK-----INKCGA 74 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECC-SSSCEEEEECCSC-----CSCEEE
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHHCCccccEEEEec-CCceEEEEEEeee-----cccCCE
Confidence 888999999999999999999999999 999999999999999999999998875 3467999999995 456899
Q ss_pred eccCCCcccccCCCccccc------CCceEEEEEcCCcccccccccc--CCccee
Q psy8860 80 VSRPGLRIYKNKDNIPKIM------NGLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 80 iSkP~~Rvy~~~~~l~~~~------~g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
|| | |+|++.+|||+|+ +|+|++|||||+|||||+||++ +|++.+
T Consensus 75 IS-~--R~y~~~~~l~kv~~~~lp~~g~G~~IlSTs~Gimt~~eAr~~~vGGevL 126 (130)
T 1i6u_A 75 IK-P--RFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLL 126 (130)
T ss_dssp CS-S--CCEECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEE
T ss_pred EE-C--CeecChhhhHHHHhccCCCCCceEEEEECCcCceeHHHHHHcCCCCEEE
Confidence 99 6 9999999999999 7999999999999999999985 777654
No 19
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H
Probab=100.00 E-value=6.6e-37 Score=262.50 Aligned_cols=117 Identities=24% Similarity=0.388 Sum_probs=107.5
Q ss_pred CCCcchHHHHHHhhhhhhccCCceEEe-ecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEeecCcceeeeeee
Q psy8860 1 MSMSDPIADMLTYIRNGQIVNKKKIIM-PSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKR 79 (374)
Q Consensus 1 M~~~d~iad~lt~IrNa~~a~~~~v~~-p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY~~~~pvi~~~~~ 79 (374)
|+|+|||||||||||||++++|.+|.+ |+||++.+||++|++||||++|++.++ +.+++|||+||| +|+.+++
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~v~Lky-----~i~~~~~ 74 (130)
T 2xzm_H 1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDD-HRSKKVVVELIG-----RINKCGV 74 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECC-SSSCEEEEECCS-----CCCCEEE
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEec-CCceEEEEEEec-----ccccCcE
Confidence 888999999999999999999999999 999999999999999999999999875 446799999999 5667999
Q ss_pred eccCCCcccccCCCccccc------CCceEEEEEcCCcccccccccc--CCccee
Q psy8860 80 VSRPGLRIYKNKDNIPKIM------NGLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 80 iSkP~~Rvy~~~~~l~~~~------~g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
|| | |+|++.+|||+|+ +|+|++|||||+|||||+||++ +|++.+
T Consensus 75 IS-~--R~y~~~~~l~kv~~~~lp~~g~Gi~IlSTs~Gimt~~eAr~~~vGGevL 126 (130)
T 2xzm_H 75 IS-P--RYDVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKIL 126 (130)
T ss_dssp CT-T--CCBCCGGGHHHHHHHHSSSTTCCCCCEECSSCEECTTHHHHTTCCCEEC
T ss_pred EE-C--ceeCCHHHhHHHHhccCCCCCceEEEEECCccceeHHHHHHcCCCCEEE
Confidence 99 6 9999999999999 7999999999999999999985 777654
No 20
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=7e-35 Score=244.94 Aligned_cols=95 Identities=52% Similarity=0.854 Sum_probs=90.3
Q ss_pred CceeeeeecccceEEEEEEeC-CCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEEEccCCC
Q psy8860 276 GINRLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSGF 354 (374)
Q Consensus 276 gkgiL~V~eSn~hi~aqvi~~-~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vvfDr~~~ 354 (374)
++++|+|++||+||||||||| .|+||+||||+|++++. |..+++|++||+.||++||+||+++||++|+||||||
T Consensus 21 ~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~----~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~ 96 (116)
T 3r8s_O 21 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE----QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGF 96 (116)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHT----TCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTS
T ss_pred CCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhcc----ccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 689999999999999999998 47999999999999874 4467899999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHcCCCC
Q psy8860 355 RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 355 ~yhgrv~a~a~~~re~Gl~f 374 (374)
+|||||+||||+|||+||+|
T Consensus 97 ~yhGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 97 QYHGRVQALADAAREAGLQF 116 (116)
T ss_dssp CSSSHHHHHHHHHHHTTCCC
T ss_pred cccHHHHHHHHHHHHhCCCC
Confidence 99999999999999999998
No 21
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.5e-35 Score=258.56 Aligned_cols=103 Identities=45% Similarity=0.642 Sum_probs=94.2
Q ss_pred CCCCcCCceeeeeecccceEEEEEEeC-CCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEE
Q psy8860 270 KPEPYKGINRLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVA 348 (374)
Q Consensus 270 ~pepYkgkgiL~V~eSn~hi~aqvi~~-~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vv 348 (374)
++.-+-++++|+|++||+||||||||| .|+||+||||+|+++++.+ +| ++++|++||+.||++||+||+|+||++||
T Consensus 58 ki~gt~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l-~~-g~~~n~~AA~~VG~liAeRA~e~GI~~Vv 135 (161)
T 3bbo_Q 58 KVEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEEL-DY-SSSPTIEVAKKVGEVIASACLEKGITKVA 135 (161)
T ss_dssp GGGGSSSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCC-TT-CCSSSHHHHHHHHHHSSSHHHHTSSCCCC
T ss_pred hhccCCCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhc-cc-cCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 344445589999999999999999998 5899999999999998765 34 46899999999999999999999999999
Q ss_pred EccCCCchhhHHHHHHHHHHHcCCCC
Q psy8860 349 FDRSGFRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 349 fDr~~~~yhgrv~a~a~~~re~Gl~f 374 (374)
||||||+|||||+||||+|||+||+|
T Consensus 136 FDRgg~~YhGRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 136 FDRGGYPYHGRVKALADAAREKGLQF 161 (161)
T ss_dssp CCCSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred EeCCCCcchHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999998
No 22
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=100.00 E-value=7.8e-35 Score=249.73 Aligned_cols=117 Identities=29% Similarity=0.468 Sum_probs=105.8
Q ss_pred CCCcchHHHHHHhhhhhhccCCceEEe-ecchhHHHHHHHHHhCCCcceEEEEeccCCeeEEEEEEEeecCcceeeeeee
Q psy8860 1 MSMSDPIADMLTYIRNGQIVNKKKIIM-PSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKR 79 (374)
Q Consensus 1 M~~~d~iad~lt~IrNa~~a~~~~v~~-p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~LKY~~~~pvi~~~~~ 79 (374)
|.++|+|||||||||||++++|.+|.+ |+||++.+||++|++||||++|++.++ ..++++||+|||+.++ ..+
T Consensus 1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~-~~~~~i~v~Lk~r~~k-----~~~ 74 (130)
T 3u5c_W 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDD-HRSGKIVVQLNGRLNK-----CGV 74 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECC-SSSCEEEEECCSCCSC-----EEE
T ss_pred CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeecc-CCCceEEEEEccccCC-----CCe
Confidence 777899999999999999999999987 999999999999999999999999886 5578999999999775 556
Q ss_pred eccCCCcccccCCCcccccC------CceEEEEEcCCcccccccccc--CCccee
Q psy8860 80 VSRPGLRIYKNKDNIPKIMN------GLGLVIISTASGIITDRKARS--MGKMPI 126 (374)
Q Consensus 80 iSkP~~Rvy~~~~~l~~~~~------g~G~~ivSTs~Gvmt~~ea~~--ig~~~I 126 (374)
|| | |+|++.+|||+|.+ |+|++|||||+|||||+||++ +|++.+
T Consensus 75 IS-p--R~y~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL 126 (130)
T 3u5c_W 75 IS-P--RFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIL 126 (130)
T ss_dssp CS-S--CCBCCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEE
T ss_pred EE-c--ceecCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEE
Confidence 77 7 99999999999986 699999999999999999985 777654
No 23
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=7.2e-34 Score=236.55 Aligned_cols=89 Identities=47% Similarity=0.752 Sum_probs=85.5
Q ss_pred ceeeeeecccceEEEEEEeC-CCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEEEccCCCc
Q psy8860 277 INRLMVHRTNLHIYANIISS-NAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSGFR 355 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~-~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vvfDr~~~~ 355 (374)
+++|+|++||+||||||||| .|+||+||||+|++++ ++|++||+.||++||+||+++||++|+||||||+
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k---------~~n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~ 93 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK---------GNKTEVARQVGRALAEKALALGIKQVAFDRGPYK 93 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC---------CCHHHHHHHHHHHHHHHHHTTTCCBCEEECTTSC
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc---------CCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCc
Confidence 89999999999999999998 4799999999999862 5799999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCC
Q psy8860 356 YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 356 yhgrv~a~a~~~re~Gl~f 374 (374)
|||||+||||+|||+||+|
T Consensus 94 yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 94 YHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp SCSSTTHHHHHHHHTTCBC
T ss_pred ccHHHHHHHHHHHHcCCCC
Confidence 9999999999999999998
No 24
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.98 E-value=1.7e-33 Score=237.30 Aligned_cols=99 Identities=49% Similarity=0.703 Sum_probs=89.9
Q ss_pred CCCCcCCceeeeeecccceEEEEEEeCC-CcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEE
Q psy8860 270 KPEPYKGINRLMVHRTNLHIYANIISSN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVA 348 (374)
Q Consensus 270 ~pepYkgkgiL~V~eSn~hi~aqvi~~~-g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vv 348 (374)
++.-+-.+++|+|++||+|||||||||+ |+||+||||+|++++ + .+++|++||+.||++||+||+++||++|+
T Consensus 21 ki~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~----~~~~n~~AA~~vG~llA~Ral~~GI~~vv 94 (120)
T 1ovy_A 21 KIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--L----DSTNNIEAAKKVGELVAKRALEKGIKQVV 94 (120)
T ss_dssp ---CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--S----SCTTSHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HhcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--c----CCCCcHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3444455899999999999999999985 799999999999986 2 46899999999999999999999999999
Q ss_pred EccCCCchhhHHHHHHHHHHHcCCCC
Q psy8860 349 FDRSGFRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 349 fDr~~~~yhgrv~a~a~~~re~Gl~f 374 (374)
||||||+|||||+||||+|||+||+|
T Consensus 95 fDrgg~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 95 FDRGGYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp CCSTTCSSCSSTHHHHHHHHHHHCCC
T ss_pred EecCCccccHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999998
No 25
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.97 E-value=4.6e-32 Score=226.37 Aligned_cols=90 Identities=44% Similarity=0.712 Sum_probs=82.2
Q ss_pred CCceeeeeecccceEEEEEEeCC-CcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEEEccCC
Q psy8860 275 KGINRLMVHRTNLHIYANIISSN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSG 353 (374)
Q Consensus 275 kgkgiL~V~eSn~hi~aqvi~~~-g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vvfDr~~ 353 (374)
-.+++|+|++||+|||||||||+ |+||+||||+| + . +++|++||+.||++||+||+++||++|+||||+
T Consensus 24 ~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l-~-------~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg 93 (114)
T 2zjr_L 24 SGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L-K-------SGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGS 93 (114)
T ss_dssp TCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C-C-------TTCSSSSHHHHHHHHHHHHHTTCCCCCEECCCS
T ss_pred CCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h-c-------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 56889999999999999999984 79999999999 3 1 478999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHcCCCC
Q psy8860 354 FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 354 ~~yhgrv~a~a~~~re~Gl~f 374 (374)
|+|||||+||||+|||+||+|
T Consensus 94 ~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 94 YKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp SCSCSHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHhCCcC
Confidence 999999999999999999998
No 26
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=99.96 E-value=2.1e-29 Score=226.54 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=88.6
Q ss_pred CceeeeeecccceEEEEEE--eCC-CcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEEEccC
Q psy8860 276 GINRLMVHRTNLHIYANII--SSN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRS 352 (374)
Q Consensus 276 gkgiL~V~eSn~hi~aqvi--~~~-g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vvfDr~ 352 (374)
++++|+|++||+||||||| ||+ |+|||||||.|++ +. +|..+++|++||+.||++||+||+++||++|+||||
T Consensus 31 ~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~---~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrg 106 (187)
T 1vq8_N 31 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EY---GWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIG 106 (187)
T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GG---TCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECT
T ss_pred CCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-cc---ccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 5799999999999999999 885 7999999999999 53 454568999999999999999999999999999999
Q ss_pred CCchh--hHHHHHHHHHHHcCCCC
Q psy8860 353 GFRYH--GRIKFLADAARKNGLNF 374 (374)
Q Consensus 353 ~~~yh--grv~a~a~~~re~Gl~f 374 (374)
+++|| |||+||||+|||+||+|
T Consensus 107 g~~yh~GgRV~Ala~gAre~GL~f 130 (187)
T 1vq8_N 107 LNSPTPGSKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp TSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred CceeccchHHHHHHHHhhcCCEec
Confidence 99999 99999999999999998
No 27
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=7.2e-29 Score=225.48 Aligned_cols=96 Identities=30% Similarity=0.304 Sum_probs=88.8
Q ss_pred CceeeeeecccceEEEEEEe--CC-CcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEEEEccC
Q psy8860 276 GINRLMVHRTNLHIYANIIS--SN-AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRS 352 (374)
Q Consensus 276 gkgiL~V~eSn~hi~aqvi~--~~-g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~vvfDr~ 352 (374)
++++|+|++||+|||||||| ++ |+||+||||.|++++. +|..+++|++||+.||++||+||+++||++|+||||
T Consensus 31 ~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~---g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfDrg 107 (203)
T 3j21_O 31 GKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDF---GWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILDIG 107 (203)
T ss_dssp CCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSS---SCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEECC
T ss_pred CCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhh---cccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 68999999999999999998 45 6999999999988642 455678999999999999999999999999999999
Q ss_pred CCch--hhHHHHHHHHHHHcCCCC
Q psy8860 353 GFRY--HGRIKFLADAARKNGLNF 374 (374)
Q Consensus 353 ~~~y--hgrv~a~a~~~re~Gl~f 374 (374)
+++| ||||+||||+|||+||+|
T Consensus 108 g~~y~~hgRV~Ala~gAre~GL~i 131 (203)
T 3j21_O 108 LHPPVRGSSVFAVLKGAVDAGLNV 131 (203)
T ss_dssp SSCCCTTSHHHHHHHHHHHHTCCC
T ss_pred cceeccCcchhhhhhhcccCCeec
Confidence 9999 899999999999999987
No 28
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.91 E-value=1.4e-24 Score=205.41 Aligned_cols=95 Identities=21% Similarity=0.122 Sum_probs=88.3
Q ss_pred CceeeeeecccceEEEEEEeCC---CcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHC----------
Q psy8860 276 GINRLMVHRTNLHIYANIISSN---AKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKI---------- 342 (374)
Q Consensus 276 gkgiL~V~eSn~hi~aqvi~~~---g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~---------- 342 (374)
.|.||+|++||+||||||||+. ++|||||||.|+. + . ||..+++|.+||+.+|.+||+||+++
T Consensus 47 ~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~-k-y--g~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~ 122 (297)
T 2zkr_n 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELP-K-Y--GVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQ 122 (297)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGG-G-T--CCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSC
T ss_pred CCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCccc-c-c--ccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCc
Confidence 5799999999999999999974 5999999999988 3 3 56667899999999999999999999
Q ss_pred -----------------CCcEEEEccCCCch--hhHHHHHHHHHHHcCCCC
Q psy8860 343 -----------------GITKVAFDRSGFRY--HGRIKFLADAARKNGLNF 374 (374)
Q Consensus 343 -----------------gi~~vvfDr~~~~y--hgrv~a~a~~~re~Gl~f 374 (374)
||.+|+||||+++| ||||+|+|+||||+||+|
T Consensus 123 ~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVfa~akGArDgGL~~ 173 (297)
T 2zkr_n 123 VEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI 173 (297)
T ss_dssp CSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred cccccccccccccccCCCceEEEEecCCcccCCCchHHHHHHHHHhcCccc
Confidence 99999999999999 999999999999999997
No 29
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.91 E-value=1.5e-24 Score=177.79 Aligned_cols=86 Identities=28% Similarity=0.346 Sum_probs=81.7
Q ss_pred cccCC-cceeecCCCeEEEEeccEEEEEeCCeEEEEEcC-CCeEEEEeCCE---EEEEEcCCchhHHHHHHHHHHHHhhc
Q psy8860 118 ARSMG-KMPIFIPPNVEVTLNSNKITLKGPLGILKQNKN-NLVNIKNDSNV---LYFTAINNSRIAKSMSGTMRSIINNM 192 (374)
Q Consensus 118 a~~ig-~~~I~IP~~V~v~~~~~~i~vkGp~G~l~~~l~-~~v~i~~~~~~---l~i~~~~~~k~~~a~~gT~rsli~Nm 192 (374)
|++++ ++||.||+||+|+++++.|+||||+|+|+++|+ +.+++.++++. +.++.++++|+++|+|||+||||+||
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~~~~~i~v~~~~~~k~~ra~~Gt~RslI~NM 87 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 87 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCCceeEEEEEccCCCHHHHHHHHHHHHHHHhh
Confidence 77898 899999999999999999999999999999999 78999999877 99998999999999999999999999
Q ss_pred ceecccceEEE
Q psy8860 193 IIGVTKGFEKK 203 (374)
Q Consensus 193 i~GVt~Gf~~~ 203 (374)
|+|||+||+|.
T Consensus 88 I~GVt~Gf~y~ 98 (100)
T 2cql_A 88 IKGVTLGSGPS 98 (100)
T ss_dssp HHHHHTSCCSC
T ss_pred hEeecCCEEEc
Confidence 99999999874
No 30
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.86 E-value=7.3e-22 Score=187.08 Aligned_cols=95 Identities=29% Similarity=0.208 Sum_probs=87.3
Q ss_pred CceeeeeecccceEEEEEEeC--CC-cEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHC--------CC
Q psy8860 276 GINRLMVHRTNLHIYANIISS--NA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKI--------GI 344 (374)
Q Consensus 276 gkgiL~V~eSn~hi~aqvi~~--~g-~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~--------gi 344 (374)
|++||+|++||+||||||||+ +| +|||||||.|+... ||...++|++||+.||++||+||+++ |+
T Consensus 47 ~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~----g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~ 122 (297)
T 3u5e_D 47 PKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRY----GITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGV 122 (297)
T ss_dssp CCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGG----TCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCC
T ss_pred CCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhc----ccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCc
Confidence 799999999999999999998 55 99999999998732 56567889999999999999999999 99
Q ss_pred cE-------------------EEEccCCCch--hhHHHHHHHHHHHcCCCC
Q psy8860 345 TK-------------------VAFDRSGFRY--HGRIKFLADAARKNGLNF 374 (374)
Q Consensus 345 ~~-------------------vvfDr~~~~y--hgrv~a~a~~~re~Gl~f 374 (374)
++ ++||+|+.++ |+||+|+++||+|+||+.
T Consensus 123 ~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVfaalKGA~DgGL~I 173 (297)
T 3u5e_D 123 EEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYV 173 (297)
T ss_dssp SSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred cccccceeccccccCCCCceeEEEecCCCccCccceehhhhhcccccCccc
Confidence 98 9999999999 999999999999999963
No 31
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.85 E-value=1.3e-21 Score=185.32 Aligned_cols=99 Identities=26% Similarity=0.277 Sum_probs=88.5
Q ss_pred CCcC-CceeeeeecccceEEEEEEeC--CC-cEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHC-----
Q psy8860 272 EPYK-GINRLMVHRTNLHIYANIISS--NA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKI----- 342 (374)
Q Consensus 272 epYk-gkgiL~V~eSn~hi~aqvi~~--~g-~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~----- 342 (374)
+.|. .++||+|++||+||||||||| +| +|||||||.|++.. +|..+++|++||+.||++||+||+++
T Consensus 42 nKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~----g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~ 117 (301)
T 4a17_M 42 DKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRF----GVSTGLASYAAAYATGLLLARRLLKQIGLDT 117 (301)
T ss_dssp TSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHT----TCCSCTTSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhc----cccCCCCcHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3443 479999999999999999997 56 99999999999742 45567889999999999999999999
Q ss_pred ---CCc-------------------EEEEccCCCch--hhHHHHHHHHHHHcCCCC
Q psy8860 343 ---GIT-------------------KVAFDRSGFRY--HGRIKFLADAARKNGLNF 374 (374)
Q Consensus 343 ---gi~-------------------~vvfDr~~~~y--hgrv~a~a~~~re~Gl~f 374 (374)
|++ +++||+|+.++ |+||+|+++||+|+||+.
T Consensus 118 ~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVfaalKGA~DgGL~I 173 (301)
T 4a17_M 118 VYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVFGVLKGACDGGINI 173 (301)
T ss_dssp TCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred cccCccccccceeecccccCCCCceEEEEecCCcccCcccchhhhhhcccccCccc
Confidence 999 69999999999 999999999999999963
No 32
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.78 E-value=2.4e-19 Score=169.94 Aligned_cols=92 Identities=23% Similarity=0.174 Sum_probs=83.6
Q ss_pred CceeeeeecccceEEEEEEeC--CC-cEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHC--------CC
Q psy8860 276 GINRLMVHRTNLHIYANIISS--NA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKI--------GI 344 (374)
Q Consensus 276 gkgiL~V~eSn~hi~aqvi~~--~g-~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~--------gi 344 (374)
.|.||+ ||+|||||||++ +| +|||||||.|+... ||...++|.+||+.||++||+||+++ |+
T Consensus 51 pKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~ky----G~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~ 123 (304)
T 3iz5_Q 51 PKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRY----GLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGN 123 (304)
T ss_dssp CCSSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGG----SCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSS
T ss_pred CCceee---cCCcEEEEEEecCCCCCEEEEEEecCchhhc----ccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCc
Confidence 357888 999999999997 56 99999999998842 56667899999999999999999999 99
Q ss_pred cE------------------EEEccCCCchh--hHHHHHHHHHHHcCCCC
Q psy8860 345 TK------------------VAFDRSGFRYH--GRIKFLADAARKNGLNF 374 (374)
Q Consensus 345 ~~------------------vvfDr~~~~yh--grv~a~a~~~re~Gl~f 374 (374)
++ ++||+|+.++| +||+|+++||+|+||++
T Consensus 124 ~e~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfaalKGA~DgGL~I 173 (304)
T 3iz5_Q 124 VEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 173 (304)
T ss_dssp SCCCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHHHHHHHHTTTCCC
T ss_pred cccccceecccccCCCCCceEEEecCCcccccCceeEEeeccccccCccc
Confidence 98 99999999998 89999999999999963
No 33
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=96.87 E-value=0.0033 Score=53.21 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=70.8
Q ss_pred ceeeeeecccceEEEEEEeCCCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEE-EEccCCCc
Q psy8860 277 INRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKV-AFDRSGFR 355 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~v-vfDr~~~~ 355 (374)
.|++.++-|-++..+.|.|..|.+++.+|+-...++.. ..+.-.||..+++.+|++|+|.|+..+ ++=+|.-
T Consensus 16 ~gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~gfKg~------rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G- 88 (129)
T 2vqe_K 16 SGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGS------RKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG- 88 (129)
T ss_dssp EEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSG------GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCC-
T ss_pred ceEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcCC------CcCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC-
Confidence 59999999999999999999999999999887777643 246779999999999999999999987 4445521
Q ss_pred hhhHHHHHHHHHHHcCCC
Q psy8860 356 YHGRIKFLADAARKNGLN 373 (374)
Q Consensus 356 yhgrv~a~a~~~re~Gl~ 373 (374)
-|| +++..++..+||+
T Consensus 89 -~Gr-e~airaL~~~Gl~ 104 (129)
T 2vqe_K 89 -AGR-EQAIRALQASGLQ 104 (129)
T ss_dssp -TTH-HHHHHHHHTSSSE
T ss_pred -CCH-HHHHHHHHHCCCE
Confidence 245 4667777778875
No 34
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=96.74 E-value=0.0031 Score=52.50 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=66.4
Q ss_pred ceeeeeecccceEEEEEEeCCCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEE-EEccCCCc
Q psy8860 277 INRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKV-AFDRSGFR 355 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~v-vfDr~~~~ 355 (374)
.|+..++-|-++..+.+.|..|.+++.+|+-...++.. ..+.-.||...++.++++|+|.|++.+ ++=+|.-.
T Consensus 6 ~gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~gfKg~------rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G~ 79 (117)
T 3r8n_K 6 DGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGS------RKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGP 79 (117)
T ss_dssp EEEEEEEECSSCEEEEEECTTSCCSEEEETGGGSCCGG------GGSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSSS
T ss_pred eeEEEEEcccCCEEEEEEcCCCCEEEEEcCCccccCCC------ccCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCCc
Confidence 59999999999999999999998999888877777643 245678999999999999999999987 33354211
Q ss_pred hhhHHHHHHHHHHHcCCC
Q psy8860 356 YHGRIKFLADAARKNGLN 373 (374)
Q Consensus 356 yhgrv~a~a~~~re~Gl~ 373 (374)
|| +++..++..+||+
T Consensus 80 --Gr-~~airaL~~~Gl~ 94 (117)
T 3r8n_K 80 --GR-ESTIRALNAAGFR 94 (117)
T ss_dssp --ST-THHHHHHHHTTCE
T ss_pred --cH-HHHHHHHHhCCCE
Confidence 22 2334444567764
No 35
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.47 E-value=0.016 Score=49.52 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=67.4
Q ss_pred ceeeeeecccceEEEEEEeCCC-cEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEE-EEccC--
Q psy8860 277 INRLMVHRTNLHIYANIISSNA-KILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKV-AFDRS-- 352 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~~g-~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~v-vfDr~-- 352 (374)
.|++.++-|-++..+.|.|..| .+++.+|.-...++.. ..+.-.||...++.+|++|++.||+.+ |+=||
T Consensus 14 ~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~------~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~g 87 (137)
T 3j20_M 14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADR------DEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPG 87 (137)
T ss_dssp EEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTT------TSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred ceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCC------ccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCC
Confidence 6999999999999999999988 6998888766555422 345678999999999999999999987 44455
Q ss_pred CCc---h-hhHHHHHHHHHHHcCCC
Q psy8860 353 GFR---Y-HGRIKFLADAARKNGLN 373 (374)
Q Consensus 353 ~~~---y-hgrv~a~a~~~re~Gl~ 373 (374)
|.+ + -|| ++++.++..+||+
T Consensus 88 g~~~~~pG~Gr-esairaL~~~Gl~ 111 (137)
T 3j20_M 88 GSKSKTPGPGA-QAAIRALARAGLK 111 (137)
T ss_dssp SSSCCSCCTHH-HHHHHHHHHHTCE
T ss_pred CCCCcCCCCcH-HHHHHHHHhCCCE
Confidence 333 2 244 3445566666775
No 36
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=96.28 E-value=0.0034 Score=53.82 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=69.7
Q ss_pred ceeeeeecccceEEEEEEeCCCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEE-EEccCCCc
Q psy8860 277 INRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKV-AFDRSGFR 355 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~v-vfDr~~~~ 355 (374)
.|++.++-|-++..+.|.|..|.+++.+|+-...++.. ..+.-.||..+++.+|++|+|.|+..| ++=+|.-
T Consensus 29 ~gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~GfKg~------rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G- 101 (140)
T 3bbn_K 29 KGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGT------KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPG- 101 (140)
T ss_dssp CCEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTT------SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCS-
T ss_pred eeEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEccc------ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC-
Confidence 59999999999999999999999999999877777643 356789999999999999999999987 4445421
Q ss_pred hhhHHHHHHHHHHHcCCC
Q psy8860 356 YHGRIKFLADAARKNGLN 373 (374)
Q Consensus 356 yhgrv~a~a~~~re~Gl~ 373 (374)
-|| +++..++..+||+
T Consensus 102 -~GR-eaairaL~~~Gl~ 117 (140)
T 3bbn_K 102 -LGR-DAALRAIRRSGIL 117 (140)
T ss_dssp -TTS-SHHHHHHHTTTCE
T ss_pred -CcH-HHHHHHHHHCCCE
Confidence 133 2556677777875
No 37
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=96.11 E-value=0.011 Score=51.34 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=65.3
Q ss_pred ceeeeeecccceEEEEEEeCCCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEE-EEccC--C
Q psy8860 277 INRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKV-AFDRS--G 353 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~v-vfDr~--~ 353 (374)
.|+++++-|-++..+.|.|..|..+.+.||-....++. ...+.-.||...++.+|++|++.||+.+ ++=|| |
T Consensus 28 ~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~-----r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~gg 102 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKAD-----REESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGG 102 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSG-----GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCT
T ss_pred eeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCC-----CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcCCC
Confidence 59999999999999999998886444445544444332 1245678999999999999999999987 33443 3
Q ss_pred Cc---h-hhHHHHHHHHHHHcCCC
Q psy8860 354 FR---Y-HGRIKFLADAARKNGLN 373 (374)
Q Consensus 354 ~~---y-hgrv~a~a~~~re~Gl~ 373 (374)
.+ + -|| +++..++..+||+
T Consensus 103 ~~~kgpG~Gr-esairaL~~~Glk 125 (151)
T 2xzm_K 103 VETKQPGPGA-QSALRALARSGMK 125 (151)
T ss_dssp TSCCSCCSHH-HHHHHHHHHTSCE
T ss_pred CCccCCCccH-HHHHHHHHHCCCE
Confidence 33 2 244 5677777778875
No 38
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=95.70 E-value=0.0083 Score=51.24 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=66.2
Q ss_pred ceeeeeecccceEEEEEEeCCCcEEEEEecchHHhhhhccccCCCCCChHHHHHHHHHHHHHHHHCCCcEE-EEcc--CC
Q psy8860 277 INRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKV-AFDR--SG 353 (374)
Q Consensus 277 kgiL~V~eSn~hi~aqvi~~~g~tl~sast~e~~~~~~l~~~~~~~~~~~aa~~vG~~la~r~~~~gi~~v-vfDr--~~ 353 (374)
.|+..++-|-++..+.|.|..|.++.+.|+-...++.. ...+.-.||...++.+|++|+|.||+.+ ++=| ||
T Consensus 14 ~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~gfKg~-----r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vra~gg 88 (137)
T 3u5c_O 14 FGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKAD-----RDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGG 88 (137)
T ss_dssp EEECCEEEETTEEEECCEETTSSSCCCCCBTTTTSCCS-----TTTTCHHHHHHHHHHHHHHHHHHTCCEEECEEECSCT
T ss_pred eEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCcEEeCC-----cccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeccCC
Confidence 69999999999999999999888777666666566532 1235678999999999999999999987 3333 34
Q ss_pred Cch----hhHHHHHHHHHHHcCCC
Q psy8860 354 FRY----HGRIKFLADAARKNGLN 373 (374)
Q Consensus 354 ~~y----hgrv~a~a~~~re~Gl~ 373 (374)
.+. -|| +++..++..+||+
T Consensus 89 ~~~kgpG~Gr-~sairaL~~~Gl~ 111 (137)
T 3u5c_O 89 TRTKTPGPGG-QAALRALARSGLR 111 (137)
T ss_dssp TSCCSCCGGG-HHHHHHHHTTTCE
T ss_pred CcccCCCcch-HHHHHHHHhCCCE
Confidence 332 244 4445566667775
No 39
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=58.73 E-value=16 Score=28.43 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=31.7
Q ss_pred CCCeEEEEeccEEEEEeC-------------CeEEEEEcC--C-----CeEEEEeCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGP-------------LGILKQNKN--N-----LVNIKNDSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp-------------~G~l~~~l~--~-----~v~i~~~~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+|. .|...+.|. . .++-.++++.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEEEEEEE
Confidence 478889999999999884 366666554 2 3556778888888743
No 40
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=56.84 E-value=27 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=31.7
Q ss_pred CCCeEEEEeccEEEEEeCC-----------eEEEEEcC--CC-----eEEEEe-CCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGPL-----------GILKQNKN--NL-----VNIKND-SNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp~-----------G~l~~~l~--~~-----v~i~~~-~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+|.. |+..+.|. .. +.-.++ ++.|.|...
T Consensus 20 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP 82 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP 82 (85)
T ss_dssp CSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence 6889999999999999853 56666654 22 555676 888887653
No 41
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=56.49 E-value=26 Score=26.88 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCCeEEEEeccEEEEEeC------------------CeEEEEEc--CC-----CeEEEEeCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGP------------------LGILKQNK--NN-----LVNIKNDSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp------------------~G~l~~~l--~~-----~v~i~~~~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+|. .|...+.| |. .++-..+++.|.|...
T Consensus 27 ~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 95 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIP 95 (100)
T ss_dssp GGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeCCEEEEEEe
Confidence 467788888888888873 34555544 32 3556677888877643
No 42
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=46.42 E-value=13 Score=29.55 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=34.0
Q ss_pred EEeCCCCcEEEcccCCEEEEEecchhhhhhHHHHHHhhcCCCCcCCceeeeeecccceEEEEEEeCC-CcEEEE
Q psy8860 231 LYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSN-AKILIS 303 (374)
Q Consensus 231 ~~~IP~gV~v~~~~~t~I~l~G~dke~Vgq~Aa~Ir~~r~pepYkgkgiL~V~eSn~hi~aqvi~~~-g~tl~s 303 (374)
.++||+||+|++.+ +.|+++|+ ||-|...-.+..|..++.|.. ++..++
T Consensus 16 pI~IP~gV~V~i~~-~~VtVKGP-----------------------kG~L~~~~~h~~v~i~~e~~~~~~i~v~ 65 (100)
T 2cql_A 16 TVDIPENVDITLKG-RTVIVKGP-----------------------RGTLRRDFNHINVELSLLGKKKKRLRVD 65 (100)
T ss_dssp EECCCSSCEEEEET-TEEEEEET-----------------------TEEEEEECCSSCCEEEEECSSSCEEEEE
T ss_pred cEEcCCCCEEEEeC-CEEEEECC-----------------------CceEEEEeccCcEEEEEcCCceeEEEEE
Confidence 56899999999965 58999986 466766666566777665543 334444
No 43
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=46.20 E-value=33 Score=28.99 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=31.7
Q ss_pred CCCeEEEEeccEEEEEe-------------------CCeEEEEEc--CC-----CeEEEEeCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKG-------------------PLGILKQNK--NN-----LVNIKNDSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkG-------------------p~G~l~~~l--~~-----~v~i~~~~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+| ..|...+.+ |. .++-..+++.|.|...
T Consensus 79 ~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lp 148 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILP 148 (161)
T ss_dssp GGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEEECCEEEEEEE
Confidence 47889999999999988 345555554 43 2556788999888754
No 44
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=43.65 E-value=51 Score=25.59 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCeEEEEeccEEEEEeCCeE-----------E--EEEcCC-----CeEEEE-eCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGPLGI-----------L--KQNKNN-----LVNIKN-DSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp~G~-----------l--~~~l~~-----~v~i~~-~~~~l~i~~~ 172 (374)
|++++|+++++.|+|+|-... . ++.||. .+.-.+ +++.|.|...
T Consensus 24 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I~lP 86 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQAT 86 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEEEEC
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEEEEE
Confidence 478999999999999997643 2 344553 356678 7898888743
No 45
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=42.27 E-value=50 Score=24.95 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCCeEEEEeccEEEEEeCCeE-----------E--EEEcCCC-----eEEEE-eCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGPLGI-----------L--KQNKNNL-----VNIKN-DSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp~G~-----------l--~~~l~~~-----v~i~~-~~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+|..-. . ++.||.. +.-.+ +++.|.|...
T Consensus 19 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~p 81 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGP 81 (90)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEEC
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence 478899999999999997532 2 3344433 45678 7888888754
No 46
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=39.58 E-value=61 Score=25.39 Aligned_cols=44 Identities=11% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCCeEEEEeccEEEEEeCCe-----------EEE--EEcCC-----CeEEEE-eCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGPLG-----------ILK--QNKNN-----LVNIKN-DSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp~G-----------~l~--~~l~~-----~v~i~~-~~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+|... +.. +.||. .+.-.+ +++.|.|...
T Consensus 25 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~~P 87 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGP 87 (106)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence 58899999999999999542 123 33342 356678 7898888743
No 47
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=38.85 E-value=35 Score=36.16 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=31.6
Q ss_pred HHHHHHHCCCcEEEEccCCC------------------chhhHHHHHHHHHHHcCCCC
Q psy8860 335 IAKKALKIGITKVAFDRSGF------------------RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 335 la~r~~~~gi~~vvfDr~~~------------------~yhgrv~a~a~~~re~Gl~f 374 (374)
+|++|+++|++-++.|=|=+ ++-+=+++|+|.+++.||+|
T Consensus 351 ~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~Gmkf 408 (729)
T 4fnq_A 351 IAKTEAELGIELFVLDDGWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQF 408 (729)
T ss_dssp HHHHHHHHTCCEEEECSCCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCccEEEEcceeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEE
Confidence 57888999999999996511 12223899999999999987
No 48
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=37.56 E-value=24 Score=31.02 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=21.0
Q ss_pred cCCcc---eeecCCCeEEEEeccEEEEEeCC
Q psy8860 120 SMGKM---PIFIPPNVEVTLNSNKITLKGPL 147 (374)
Q Consensus 120 ~ig~~---~I~IP~~V~v~~~~~~i~vkGp~ 147 (374)
.+|-. .++||+||++++.++.|+++|..
T Consensus 108 ~LG~shpv~~~ip~gi~v~v~~~~I~v~G~D 138 (178)
T 1vq8_E 108 FLGEKAPRRTTIHGDTDVEIDGEELTVSGPD 138 (178)
T ss_dssp GGGCSSCEEEECCTTCEEEEETTEEEEEESC
T ss_pred cccccccEEEeCCCCeEEEEeCCEEEEEECC
Confidence 35643 56899999999887778877753
No 49
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=35.71 E-value=53 Score=29.20 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. .....|..+|.+++++.|+++
T Consensus 113 g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (290)
T 3clk_A 113 GYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAI 158 (290)
T ss_dssp HHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCC
Confidence 4445555556698888774432 223579999999999999864
No 50
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=35.52 E-value=70 Score=25.54 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=31.6
Q ss_pred CCCeEEEEec-cEEEEEeCCe--------------EE--EEEcCC-----Ce-EEEEeCCEEEEEEc
Q psy8860 129 PPNVEVTLNS-NKITLKGPLG--------------IL--KQNKNN-----LV-NIKNDSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~-~~i~vkGp~G--------------~l--~~~l~~-----~v-~i~~~~~~l~i~~~ 172 (374)
|++|+|++++ +.|+|+|... .. ++.||. .+ +-..+++.|.|...
T Consensus 47 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~GvL~I~lP 113 (123)
T 3aab_A 47 KEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113 (123)
T ss_dssp GGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEETTEEEEEEE
T ss_pred HHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcCCEEEEEEE
Confidence 5788999999 9999999842 23 344552 46 66788898888753
No 51
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=34.58 E-value=47 Score=29.44 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCcEEEEccC--CC-chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRS--GF-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~--~~-~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+ .. ....|..+|.+++++.|+++
T Consensus 109 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 155 (288)
T 2qu7_A 109 AAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNV 155 (288)
T ss_dssp HHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3445555566679888866433 22 23579999999999999864
No 52
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=32.66 E-value=79 Score=27.35 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCcEEEEccCC----CchhhHHHHHHHHHHHcCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSG----FRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~----~~yhgrv~a~a~~~re~Gl~ 373 (374)
.|+.+++.+.+.|..++.|=.+. ....-|..+|.++++++|++
T Consensus 102 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~ 148 (255)
T 1byk_A 102 AIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLH 148 (255)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 34445555666799988775432 22367999999999999985
No 53
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=32.08 E-value=40 Score=32.91 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCCc-----hhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGFR-----YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~~-----yhgrv~a~a~~~re~Gl~f 374 (374)
=|+++++.+.+.|.++++|=.|... ..-|.+.+.+++.|+||+|
T Consensus 143 Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~ 191 (371)
T 3qi7_A 143 RGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPF 191 (371)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCc
Confidence 3556678888999999877665431 2239999999999999975
No 54
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=31.94 E-value=32 Score=30.47 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=17.5
Q ss_pred eeecCCCeEEEEec---cEEEEEeCC
Q psy8860 125 PIFIPPNVEVTLNS---NKITLKGPL 147 (374)
Q Consensus 125 ~I~IP~~V~v~~~~---~~i~vkGp~ 147 (374)
.+.||+||+|+..+ +.|+++|..
T Consensus 125 ~~~ip~Gv~v~v~~~~kteIil~G~D 150 (191)
T 3u5e_H 125 NVPVRDGVTIEFSTNVKDEIVLSGNS 150 (191)
T ss_dssp EEECCTTEEEEECTTSTTEEEEEESC
T ss_pred EEECCCCEEEEECCCCCCEEEEEECC
Confidence 34789999999887 677777754
No 55
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=31.61 E-value=58 Score=29.14 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. ....-|..+|.++++++|+++
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 159 (294)
T 3qk7_A 114 ASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMP 159 (294)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCC
Confidence 4445555566799988764432 223579999999999999864
No 56
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=31.60 E-value=1e+02 Score=23.22 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=46.6
Q ss_pred chHHHHHHhhhhhhccCCceEEeecc----hhHHHHHHHHHhCCCcceEEEEecc-CCeeEEEEEEE
Q psy8860 5 DPIADMLTYIRNGQIVNKKKIIMPSS----KIKIAIAKVLKDEGYIKDFFIIKCF-KNKFELKILLK 66 (374)
Q Consensus 5 d~iad~lt~IrNa~~a~~~~v~~p~s----k~~~~il~iL~~eGyI~~~~~~~~~-~~~~~i~v~LK 66 (374)
+-..-+-.-|..|..++.+.|.+-+- .++..+.+.|.++-++.+|...+.. .+...+.|.||
T Consensus 16 eA~~~l~~fl~~a~~~g~~~v~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk 82 (83)
T 2zqe_A 16 EALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALR 82 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEe
Confidence 33445566788899999999887654 4899999999999999999876532 23457777775
No 57
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=31.06 E-value=53 Score=28.95 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~ 373 (374)
|+.+++.+.+.|..++.|=.+. ....-|..+|.+++++.|++
T Consensus 106 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 150 (277)
T 3cs3_A 106 ATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIP 150 (277)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCC
Confidence 4444555555688888664432 12357999999999999986
No 58
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.06 E-value=52 Score=29.48 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~ 373 (374)
|+.+++.+.+.|..++.|=.+. ....-|..+|.++++++|++
T Consensus 119 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 163 (295)
T 3hcw_A 119 SENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLD 163 (295)
T ss_dssp HHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCC
Confidence 4444555555699998774332 22457999999999999985
No 59
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=30.91 E-value=65 Score=27.86 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCCeEEEEeccEEEEEeCCeE-------------EEEEcCC-----CeEEEE-eCCEEEEEEc
Q psy8860 129 PPNVEVTLNSNKITLKGPLGI-------------LKQNKNN-----LVNIKN-DSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~~~~~i~vkGp~G~-------------l~~~l~~-----~v~i~~-~~~~l~i~~~ 172 (374)
|++|+|+++++.|+|+|.... -++.||. .++-.+ +++.|.|+..
T Consensus 86 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lP 148 (175)
T 2klr_A 86 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGP 148 (175)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEE
Confidence 589999999999999997643 2334443 356678 6898888754
No 60
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=30.71 E-value=36 Score=29.73 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=21.1
Q ss_pred cCCcc---eeecCCCeEEEEecc-EEEEEeCC
Q psy8860 120 SMGKM---PIFIPPNVEVTLNSN-KITLKGPL 147 (374)
Q Consensus 120 ~ig~~---~I~IP~~V~v~~~~~-~i~vkGp~ 147 (374)
.+|-. .++||+||++++.++ .|+++|..
T Consensus 105 ~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~D 136 (177)
T 1rl6_A 105 SVGYSHPVEIEPEEGLEIEVPSQTKIIVKGAD 136 (177)
T ss_dssp ESSSSSCEEECCCTTEEEEEEETTEEEEEESC
T ss_pred EecCCccEEEeCCCCcEEEECCCCEEEEEeCC
Confidence 56743 568999999998865 77887764
No 61
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=30.46 E-value=33 Score=33.16 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=28.6
Q ss_pred HHHHHHCCCcEEEEccCCC---c-hh------------h--HHHHHHHHHHHcCCCC
Q psy8860 336 AKKALKIGITKVAFDRSGF---R-YH------------G--RIKFLADAARKNGLNF 374 (374)
Q Consensus 336 a~r~~~~gi~~vvfDr~~~---~-yh------------g--rv~a~a~~~re~Gl~f 374 (374)
-+.++++||+.||+-+.++ . |. + -|..++++|++.||+|
T Consensus 60 ~~~mK~~GikyvIl~~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv 116 (340)
T 4h41_A 60 FQHMKRIGIDTVIMIRSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKF 116 (340)
T ss_dssp HHHHHHTTCCEEEESCSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCEEEEEEEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeE
Confidence 3456899999999965322 1 11 2 2999999999999974
No 62
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.24 E-value=79 Score=27.85 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+.. ...-|..+|.++++++|+.+
T Consensus 118 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 164 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVL 164 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCC
Confidence 345555566667999987754432 23569999999999999864
No 63
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.15 E-value=83 Score=27.43 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCcEEEEccCC-------Cchh-hHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG-------FRYH-GRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~-------~~yh-grv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. ...+ -|...|.++++++|+++
T Consensus 102 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~ 152 (276)
T 2h0a_A 102 GRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF 152 (276)
T ss_dssp HHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCC
Confidence 4444555566799998764332 2346 89999999999999864
No 64
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=29.63 E-value=90 Score=27.67 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHHHHH--------CCCcEEEEccC--CC-chhhHHHHHHHHHHHcCCC
Q psy8860 322 GGNTFAASIIGQRIAKKALK--------IGITKVAFDRS--GF-RYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 322 ~~~~~aa~~vG~~la~r~~~--------~gi~~vvfDr~--~~-~yhgrv~a~a~~~re~Gl~ 373 (374)
..|..+++.+++.|++.+++ .|..++.|=.+ +. ....|..+|.++++++|++
T Consensus 110 ~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 172 (309)
T 2fvy_A 110 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 172 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCc
Confidence 34667888888888887754 67777765433 22 2357999999999999985
No 65
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.42 E-value=75 Score=28.49 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+. ....-|..+|.+++++.|+++
T Consensus 118 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (303)
T 3kke_A 118 GGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRS 164 (303)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCC
Confidence 34455555666799988775442 223579999999999999864
No 66
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=29.28 E-value=79 Score=27.56 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. . ...-|..+|.++++++|+++
T Consensus 108 ~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 153 (275)
T 3d8u_A 108 GKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTP 153 (275)
T ss_dssp HHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCC
Confidence 4445555566798888664432 2 23569999999999999853
No 67
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.14 E-value=85 Score=27.81 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCCc---hhhHHHHHHHHHHHcCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGFR---YHGRIKFLADAARKNGLN 373 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~~---yhgrv~a~a~~~re~Gl~ 373 (374)
.|+.+++.+.+.|..++.|=.+... ..-|..+|.+++++.|++
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 159 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLT 159 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCC
Confidence 4555666667789999877654322 346999999999999985
No 68
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.86 E-value=80 Score=27.67 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCCc-hhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGFR-YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~~-yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+... ...|..+|.+++++.|+++
T Consensus 105 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~ 149 (280)
T 3gyb_A 105 GAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEP 149 (280)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCC
Confidence 4555566666679999877654322 5679999999999999864
No 69
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=28.74 E-value=39 Score=26.07 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHCCCcE
Q psy8860 326 FAASIIGQRIAKKALKIGITK 346 (374)
Q Consensus 326 ~aa~~vG~~la~r~~~~gi~~ 346 (374)
.++|.+|..+|+..+..|++.
T Consensus 31 K~SYaIG~~mG~~L~~~g~~~ 51 (88)
T 3b09_A 31 HASYGVGRQMGEQLAANSFEG 51 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHhCCccc
Confidence 589999999999999988764
No 70
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=28.66 E-value=64 Score=28.65 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 324 NTFAASIIGQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 324 ~~~aa~~vG~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
|..+++..++.|++ .|..++.|=.+. . ...-|..+|.+++++.|+++
T Consensus 109 ~~~~g~~a~~~L~~----~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 158 (287)
T 3bbl_A 109 GTAGTRQAVEYLIG----RGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPI 158 (287)
T ss_dssp HHHHHHHHHHHHHH----HTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHH----CCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 44555555555554 588888764332 2 23579999999999999863
No 71
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=28.54 E-value=70 Score=28.20 Aligned_cols=44 Identities=20% Similarity=0.049 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCcEEEEccC--CCchhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRS--GFRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~--~~~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+ ......|..+|.++++++|+.+
T Consensus 124 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~ 169 (298)
T 3tb6_A 124 GGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFP 169 (298)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 3455556666679888765432 2234579999999999999864
No 72
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.53 E-value=2.4e+02 Score=24.53 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=41.2
Q ss_pred EEEEeccEEEEE---eCCeEEEEEcCCCeEEEEeCCEEEEEEcCCchhHHHHHHHHHHHHhhcce
Q psy8860 133 EVTLNSNKITLK---GPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMII 194 (374)
Q Consensus 133 ~v~~~~~~i~vk---Gp~G~l~~~l~~~v~i~~~~~~l~i~~~~~~k~~~a~~gT~rsli~Nmi~ 194 (374)
.+.++++.|.++ |=.--...++|+.++++..++.|.++-.+ +..+|.+.|.|++.-.
T Consensus 100 ra~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~~Iil~G~D-----ke~Vgq~AA~Ir~~~~ 159 (184)
T 3j21_F 100 SVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQEIIVEGID-----KEAVGQTAANIEQATR 159 (184)
T ss_dssp EEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETTEEEEEESC-----HHHHHHHHHHHHHHHC
T ss_pred eEEEcCCEEEEEecCCccccEEEECCCCeEEEecCCEEEEEECC-----HHHHHHHHHHHhhccc
Confidence 445568888886 66667788888888888888877766432 3567888888887654
No 73
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.31 E-value=81 Score=27.89 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+.. ...-|..+|.+++++.|+.+
T Consensus 112 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (291)
T 3egc_A 112 GARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPV 158 (291)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCC
Confidence 345555566667999987754432 24679999999999999864
No 74
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=27.97 E-value=78 Score=27.92 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+.. ...-|..+|.+++++.|+.+
T Consensus 114 ~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (289)
T 3g85_A 114 MGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKI 160 (289)
T ss_dssp HHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 344555566667988887654322 23569999999999999864
No 75
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.96 E-value=84 Score=27.63 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. . ..+.|..+|.++++++|+++
T Consensus 114 ~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~ 159 (289)
T 1dbq_A 114 GYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 159 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCC
Confidence 4444555556688888764432 2 23679999999999999863
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=27.40 E-value=88 Score=27.46 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. . ....|...|.+++.+.|+++
T Consensus 127 ~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (296)
T 3brq_A 127 SFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIAL 172 (296)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 4444555556698888765432 2 23579999999999999864
No 77
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=27.37 E-value=66 Score=26.36 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=27.2
Q ss_pred HHHHHHCCCcEEEEccCCCchhhHHHHHHHHHHHcCCCC
Q psy8860 336 AKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 336 a~r~~~~gi~~vvfDr~~~~yhgrv~a~a~~~re~Gl~f 374 (374)
++.|.++|+..++++-+.. -.++++.++++|+.+
T Consensus 86 ~~~~~~~g~~~i~~~~~~~-----~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 86 AKEAVEAGFKKLWFQPGAE-----SEEIRRFLEKAGVEY 119 (138)
T ss_dssp HHHHHHTTCCEEEECTTSC-----CHHHHHHHHHHTCEE
T ss_pred HHHHHHcCCCEEEEcCccH-----HHHHHHHHHHCCCEE
Confidence 4557789999999998764 478889999999853
No 78
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=26.69 E-value=25 Score=28.07 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=28.5
Q ss_pred chHHHHHHhhhhhhccCCce--EEeecchhHHHHHHHHHhCCCcceEEEEe
Q psy8860 5 DPIADMLTYIRNGQIVNKKK--IIMPSSKIKIAIAKVLKDEGYIKDFFIIK 53 (374)
Q Consensus 5 d~iad~lt~IrNa~~a~~~~--v~~p~sk~~~~il~iL~~eGyI~~~~~~~ 53 (374)
..+.-.|+.|.+.. ..... ..+|. ..-..+++.|.++|||.|+.+.+
T Consensus 5 ~iiYkIL~~L~~~~-~~is~e~l~Ise-~~~~~il~~L~d~GyI~Gv~~~~ 53 (102)
T 2hgc_A 5 KLRYAILKEIFEGN-TPLSENDIGVTE-DQFDDAVNFLKREGYIIGVHYSD 53 (102)
T ss_dssp CCHHHHHHHHHHHC-SCCCHHHHTSCH-HHHHHHHHHHHHHTSEECCEESS
T ss_pred eeHHHHHHHHHhCC-CcCCHHhcCCCH-HHHHHHHHHHHHCCCccceEEEe
Confidence 45566777777721 11000 11222 23457899999999999998854
No 79
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.63 E-value=83 Score=27.97 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHHCCCcEEEEccCCC---c-hhhHHHHHHHHHHHcCCCC
Q psy8860 324 NTFAASIIGQRIAKKALKIGITKVAFDRSGF---R-YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 324 ~~~aa~~vG~~la~r~~~~gi~~vvfDr~~~---~-yhgrv~a~a~~~re~Gl~f 374 (374)
|..+++.+ ++.+.+.|..++.|=.+.. . ..-|...|.++++++|+++
T Consensus 117 ~~~~g~~a----~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 167 (289)
T 2fep_A 117 YEQAIYDA----VKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPF 167 (289)
T ss_dssp HHHHHHHH----HHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHH----HHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCC
Confidence 44555544 4455556988887754432 1 3569999999999999864
No 80
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=26.23 E-value=70 Score=28.53 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+.. ...-|..+|.++++++|+.+
T Consensus 118 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 118 GARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCC
Confidence 455556666668999987754422 23579999999999999863
No 81
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.05 E-value=55 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=25.7
Q ss_pred HHHHHHHCCCcEEEEccCCCchhhHHHHHHHHHHHcCCC
Q psy8860 335 IAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 335 la~r~~~~gi~~vvfDr~~~~yhgrv~a~a~~~re~Gl~ 373 (374)
+.+.|.++|+..++|--|... ..+++.||++||.
T Consensus 74 ~v~e~~~~g~k~v~~~~G~~~-----~e~~~~a~~~Gir 107 (122)
T 3ff4_A 74 EYNYILSLKPKRVIFNPGTEN-----EELEEILSENGIE 107 (122)
T ss_dssp GHHHHHHHCCSEEEECTTCCC-----HHHHHHHHHTTCE
T ss_pred HHHHHHhcCCCEEEECCCCCh-----HHHHHHHHHcCCe
Confidence 356677889998887665432 5899999999986
No 82
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=26.01 E-value=68 Score=25.70 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEccCC
Q psy8860 330 IIGQRIAKKALKIGITKVAFDRSG 353 (374)
Q Consensus 330 ~vG~~la~r~~~~gi~~vvfDr~~ 353 (374)
.+|..+|+++.+.|.+-+++|+..
T Consensus 17 ~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 17 RVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCH
Confidence 489999999999999999999975
No 83
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=25.69 E-value=43 Score=30.20 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=22.6
Q ss_pred cCCcc---eeecCCCeEEEEecc-EEEEEeCCeEE
Q psy8860 120 SMGKM---PIFIPPNVEVTLNSN-KITLKGPLGIL 150 (374)
Q Consensus 120 ~ig~~---~I~IP~~V~v~~~~~-~i~vkGp~G~l 150 (374)
.+|-. .+.||+||+|++.++ .|+++|..-++
T Consensus 133 ~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~ 167 (212)
T 1nkw_E 133 NIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 167 (212)
T ss_pred EccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHH
Confidence 56643 568999999998865 78888876443
No 84
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=25.55 E-value=63 Score=28.02 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHCCCcEEEEccCCCc-hhhHHHHHHHHHHHcCCCC
Q psy8860 335 IAKKALKIGITKVAFDRSGFR-YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 335 la~r~~~~gi~~vvfDr~~~~-yhgrv~a~a~~~re~Gl~f 374 (374)
-++...++||++|||-...|. ....+ +-.+-++++|+++
T Consensus 110 Ca~aIi~agI~rVVy~~~~~~d~~~~~-~~~~~L~~aGI~V 149 (178)
T 2w4l_A 110 CAKLIIQAGIKEVIFMSDKYHDSDEAT-AARLLFNMAGVTF 149 (178)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTSHHHH-HHHHHHHHHTCEE
T ss_pred HHHHHHHHCCCEEEEEeccCCCCcchH-HHHHHHHHCCCEE
Confidence 567778899999999533221 12233 3478899999863
No 85
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=25.48 E-value=92 Score=27.67 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCcEEEEccC--CCchhhHHHHHHHHHHHcCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRS--GFRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~--~~~yhgrv~a~a~~~re~Gl~ 373 (374)
|+.+++.+.+.|..++.|=.+ .....-|..+|.+++++.|+.
T Consensus 114 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~ 157 (289)
T 3k9c_A 114 ITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLS 157 (289)
T ss_dssp HHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCC
Confidence 444455555679998877544 223467999999999999986
No 86
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=25.37 E-value=1.2e+02 Score=28.82 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=16.6
Q ss_pred CCCcEEEcccCCEEEEEecchhh
Q psy8860 235 PFDIICETPSQTEILIKGINKQA 257 (374)
Q Consensus 235 P~gV~v~~~~~t~I~l~G~dke~ 257 (374)
|++|+|.+.+ +.|+|+|--++.
T Consensus 247 ~edi~V~v~~-~~LtI~ge~~~~ 268 (314)
T 2bol_A 247 PKDVKVWAKG-NKVYVHGVTGKE 268 (314)
T ss_dssp GGGEEEEESS-SEEEEEEEEC--
T ss_pred hHHeEEEEEC-CEEEEEEEEecc
Confidence 4799999975 589999987654
No 87
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.31 E-value=84 Score=28.11 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+.. ...-|..+|.++++++|+.+
T Consensus 131 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 177 (305)
T 3huu_A 131 AAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISN 177 (305)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCc
Confidence 345556666677998887654322 23569999999999999864
No 88
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=25.17 E-value=38 Score=29.84 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred cCCcc---eeecCCCeEEEEecc-EEEEEeCC
Q psy8860 120 SMGKM---PIFIPPNVEVTLNSN-KITLKGPL 147 (374)
Q Consensus 120 ~ig~~---~I~IP~~V~v~~~~~-~i~vkGp~ 147 (374)
.+|-. .++||+||+|++.++ .|+++|..
T Consensus 106 ~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~D 137 (185)
T 2zjr_E 106 NIGYSHPVIIEPPAGVTFAVPEPTRIDVSGID 137 (185)
T ss_dssp CSSCSSCCBCCCCTTEEEECSSTTEEEEEESS
T ss_pred EeeCCccEEEECCCCeEEEECCCCEEEEEecC
Confidence 56743 568999999998764 77777754
No 89
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.09 E-value=47 Score=29.40 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=17.7
Q ss_pred eeecCCCeEEEEec---cEEEEEeCC
Q psy8860 125 PIFIPPNVEVTLNS---NKITLKGPL 147 (374)
Q Consensus 125 ~I~IP~~V~v~~~~---~~i~vkGp~ 147 (374)
.++||+||+++..+ +.|+++|.-
T Consensus 125 ~~~iP~gv~v~v~~~~~t~I~v~GiD 150 (192)
T 2zkr_e 125 RVRMRPGVACSVSQAQKDELILEGND 150 (192)
T ss_dssp EEECCSSCEEEECSSCSSEEEEEESC
T ss_pred EeeCCCCeEEEEcCCCCCEEEEEeCC
Confidence 56899999999875 467777754
No 90
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.06 E-value=1e+02 Score=27.27 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. . ....|..+|.++++++|+++
T Consensus 112 g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 157 (285)
T 3c3k_A 112 SEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDY 157 (285)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCc
Confidence 3444555555698888764432 2 23579999999999999864
No 91
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.05 E-value=1.1e+02 Score=27.97 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=-+. .....|..+|.++++++|+++
T Consensus 168 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 214 (338)
T 3dbi_A 168 TSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIAL 214 (338)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCC
Confidence 34555666667899998875442 223579999999999999864
No 92
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=23.76 E-value=42 Score=20.61 Aligned_cols=20 Identities=25% Similarity=0.693 Sum_probs=16.3
Q ss_pred EccCCCchhhHHHHHHHHHH
Q psy8860 349 FDRSGFRYHGRIKFLADAAR 368 (374)
Q Consensus 349 fDr~~~~yhgrv~a~a~~~r 368 (374)
|+||||.++-.|.-+.|++-
T Consensus 1 fnrggynfgksvrhvid~ig 20 (33)
T 2jui_A 1 FNRGGYNFGKSVRHVVDAIG 20 (33)
T ss_dssp CCSCSCCSSHHHHHHHHHHH
T ss_pred CCccccccchhHHHHHHHHh
Confidence 78999999888888877653
No 93
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=23.19 E-value=59 Score=28.34 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=19.8
Q ss_pred cCCc---ceeecCCCeEEEEec-cEEEEEeCC
Q psy8860 120 SMGK---MPIFIPPNVEVTLNS-NKITLKGPL 147 (374)
Q Consensus 120 ~ig~---~~I~IP~~V~v~~~~-~~i~vkGp~ 147 (374)
.+|- ..+.||+||+|++.+ +.|+++|..
T Consensus 105 ~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~D 136 (176)
T 3r8s_G 105 SLGFSHPVDHQLPAGITAECPTQTEIVLKGAD 136 (176)
T ss_dssp ECSSSSCEEEECCTTCEEEEEETTEEEEEESC
T ss_pred EecCCeeEEEECCCCeEEEECCCCEEEEEECc
Confidence 5663 335899999999865 467777754
No 94
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=22.82 E-value=1.2e+02 Score=27.77 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 324 NTFAASIIGQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 324 ~~~aa~~vG~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
|..+++..++. +.+.|..++.|=.+.. ..+.|...|.++++++|+++
T Consensus 161 ~~~~~~~a~~~----L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~ 210 (340)
T 1qpz_A 161 AFEGGYMAGRY----LIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 210 (340)
T ss_dssp HHHHHHHHHHH----HHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHH----HHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCC
Confidence 44555555444 4455989887754432 23579999999999999864
No 95
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=22.81 E-value=44 Score=29.25 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=20.3
Q ss_pred cCCc---ceeecCCCeEEEEecc-EEEEEeCC
Q psy8860 120 SMGK---MPIFIPPNVEVTLNSN-KITLKGPL 147 (374)
Q Consensus 120 ~ig~---~~I~IP~~V~v~~~~~-~i~vkGp~ 147 (374)
.+|- ..+.||+||+|++.+. .|+++|..
T Consensus 106 ~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~D 137 (180)
T 3v2d_H 106 TVGFSHPVVVEPPEGITFEVPEPTRVRVSGID 137 (180)
T ss_dssp ECSSSSCEEECCCTTCEEECSSTTEEEEEESC
T ss_pred EecCCeeEEEECCCCeEEEECCCCEEEEEECc
Confidence 4663 3358899999998874 77777764
No 96
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=22.61 E-value=81 Score=27.60 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHCCCcEEEEccCC---CchhhHHHHHHHHHHHcCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRSG---FRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~~---~~yhgrv~a~a~~~re~Gl~ 373 (374)
.|+.+++.+.+.|..++.|=.+. ....-|..+|.+++++.|++
T Consensus 109 ~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 154 (277)
T 3e61_A 109 GGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRID 154 (277)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 45555666666799988775432 22357999999999999986
No 97
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.34 E-value=1.1e+02 Score=27.32 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCC--CcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIG--ITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~g--i~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.++| -.++.|=.+. . ....|.++|.+++++.|+++
T Consensus 115 ~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~ 163 (297)
T 3rot_A 115 AGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFF 163 (297)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeE
Confidence 3445555555567 7888775432 2 23479999999999999863
No 98
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.31 E-value=1.3e+02 Score=27.36 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCcEEEEccCCC---chhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSGF---RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~~---~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+.. ....|...|.++++++|+++
T Consensus 168 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 213 (332)
T 2o20_A 168 AYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEF 213 (332)
T ss_dssp HHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 34445555567999887754432 23569999999999999864
No 99
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.07 E-value=99 Score=28.52 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCcEEEEccC---CCc-hhhHHHHHHHHHHHcCCCC
Q psy8860 331 IGQRIAKKALKIGITKVAFDRS---GFR-YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 331 vG~~la~r~~~~gi~~vvfDr~---~~~-yhgrv~a~a~~~re~Gl~f 374 (374)
.|+.+++.+.+.|..++.|=.+ ... ..-|..+|.++++++|+.+
T Consensus 174 ~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 221 (355)
T 3e3m_A 174 AAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNP 221 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCC
Confidence 3445556666679998877433 222 4579999999999999864
No 100
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=22.03 E-value=40 Score=32.97 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=31.6
Q ss_pred HHHHHHCCCcEEEEccCC--CchhhHHHHHHHHHHHcCCCC
Q psy8860 336 AKKALKIGITKVAFDRSG--FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 336 a~r~~~~gi~~vvfDr~~--~~yhgrv~a~a~~~re~Gl~f 374 (374)
-+.|+++||+-+++++.+ ......+..+.++|.+.|++|
T Consensus 109 i~~ak~aGIDgfal~w~~~~~~~d~~l~~~~~aA~~~g~k~ 149 (382)
T 4acy_A 109 IRMHIKANVGVLSVTWWGESDYGNQSVSLLLDEAAKVGAKV 149 (382)
T ss_dssp HHHHHHHTEEEEEEEECGGGGTTCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHcCCCEEEEEecCCCCchHHHHHHHHHHHHHcCCEE
Confidence 567788999999999953 234568999999999999875
No 101
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=21.92 E-value=64 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCcEEEEccCCCchhhHHHHHHHHHHHcCCC
Q psy8860 334 RIAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 334 ~la~r~~~~gi~~vvfDr~~~~yhgrv~a~a~~~re~Gl~ 373 (374)
.+++.|.++|+..+++..|.. -..+++.++++|+.
T Consensus 92 ~vv~~~~~~gi~~i~~~~g~~-----~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 92 EYVEQAIKKGAKVVWFQYNTY-----NREASKKADEAGLI 126 (144)
T ss_dssp HHHHHHHHHTCSEEEECTTCC-----CHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCEEEECCCch-----HHHHHHHHHHcCCE
Confidence 335678889999988886653 47888899999985
No 102
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=21.66 E-value=1.2e+02 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEccCC
Q psy8860 330 IIGQRIAKKALKIGITKVAFDRSG 353 (374)
Q Consensus 330 ~vG~~la~r~~~~gi~~vvfDr~~ 353 (374)
.+|..+|+.+.+.|.+-+++|+..
T Consensus 16 ~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHHHHHHCCCeEEEEECCH
Confidence 389999999999999999999964
No 103
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=21.57 E-value=1.2e+02 Score=27.59 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+. . ....|...|.++++++|+++
T Consensus 160 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 160 GRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 3444555556698888764432 2 23579999999999999864
No 104
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=21.36 E-value=56 Score=26.94 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=25.9
Q ss_pred HHHHHCCCcEEEEccCCCchhhHHHHHHHHHHHcCCCC
Q psy8860 337 KKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 337 ~r~~~~gi~~vvfDr~~~~yhgrv~a~a~~~re~Gl~f 374 (374)
+.|.++|+..++++-+.. -.++++.++++|+.+
T Consensus 88 ~~~~~~g~~~i~i~~~~~-----~~~l~~~a~~~Gi~~ 120 (145)
T 2duw_A 88 QEAIAIGAKTLWLQLGVI-----NEQAAVLAREAGLSV 120 (145)
T ss_dssp HHHHHHTCCEEECCTTCC-----CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCEEEEcCChH-----HHHHHHHHHHcCCEE
Confidence 446678999999987654 578889999999864
No 105
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.20 E-value=1.1e+02 Score=27.03 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHHHHCCCcEEEEccCC--C-chhhHHHHHHHHHHHcCCCC
Q psy8860 323 GNTFAASIIGQRIAKKALKIGITKVAFDRSG--F-RYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 323 ~~~~aa~~vG~~la~r~~~~gi~~vvfDr~~--~-~yhgrv~a~a~~~re~Gl~f 374 (374)
.|..+++.+++ .+.+.|..++.|=.+. . ....|..+|.+++++.|+++
T Consensus 111 D~~~~g~~a~~----~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 161 (290)
T 2rgy_A 111 DHRRGGELAAA----TLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIAR 161 (290)
T ss_dssp CHHHHHHHHHH----HHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred CcHHHHHHHHH----HHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 45555555544 4455688888765432 1 23579999999999999863
No 106
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.00 E-value=1.1e+02 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCcEEEEccCCC---c-hhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGITKVAFDRSGF---R-YHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi~~vvfDr~~~---~-yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|..++.|=.+.. . ...|...|.++++++|+++
T Consensus 165 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 211 (332)
T 2hsg_A 165 AFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPV 211 (332)
T ss_dssp HHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 44455556667999887754432 1 3569999999999999864
No 107
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=20.95 E-value=1.1e+02 Score=25.44 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=28.1
Q ss_pred CCCeEEEE-eccEEEEEeCC------------------eEEEEE--cCC-----CeEEEEeCCEEEEEEc
Q psy8860 129 PPNVEVTL-NSNKITLKGPL------------------GILKQN--KNN-----LVNIKNDSNVLYFTAI 172 (374)
Q Consensus 129 P~~V~v~~-~~~~i~vkGp~------------------G~l~~~--l~~-----~v~i~~~~~~l~i~~~ 172 (374)
|++|+|++ +++.|+|+|.. |...+. ||. .+.-..+++.|.|...
T Consensus 66 kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 135 (151)
T 1gme_A 66 KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVP 135 (151)
T ss_dssp GGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEE
T ss_pred hHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEECCEEEEEEE
Confidence 46788888 46788888743 344443 443 2455678888887643
No 108
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=20.90 E-value=2.1e+02 Score=19.93 Aligned_cols=28 Identities=4% Similarity=-0.141 Sum_probs=21.0
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHcCCC
Q psy8860 346 KVAFDRSGFRYHGRIKFLADAARKNGLN 373 (374)
Q Consensus 346 ~vvfDr~~~~yhgrv~a~a~~~re~Gl~ 373 (374)
.|+.---....+|+|-.+++.++++|+.
T Consensus 47 ~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 47 LFLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 4444333445789999999999999974
No 109
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=20.75 E-value=1.3e+02 Score=27.57 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=61.4
Q ss_pred hhhhhhHHHHHHhhcCCCCcCC----ceeeeeecccceEEEEEEeCC---CcEEEEEecchHHhhhhccccCCCCCChHH
Q psy8860 255 KQAVGHVAAEIRRYYKPEPYKG----INRLMVHRTNLHIYANIISSN---AKILISASTLEKEVRLTLNTKLGKGGNTFA 327 (374)
Q Consensus 255 ke~Vgq~Aa~Ir~~r~pepYkg----kgiL~V~eSn~hi~aqvi~~~---g~tl~sast~e~~~~~~l~~~~~~~~~~~a 327 (374)
.+.|.++|+...--.--.+|.| +|.| .....+|-| +|.++ |.+-.|. =...-+. ....-.+++
T Consensus 80 ~~~Va~Ia~~~~P~HVNQvFtgag~t~~~L--~~~~T~VNa-LvsPTG~~G~VkIsT--Gp~Ss~~-----~~~~V~vet 149 (249)
T 3m0z_A 80 SAMVSEISRQVQPQHVNQVFTGVATSRALL--GQNETVVNG-LVSPTGTPGMVKIST--GPLSSGA-----ADGIVPLET 149 (249)
T ss_dssp HHHHHHHHHHHCCSEECCBGGGHHHHHHHH--TSSCSEEEE-EEBCCSSTTEEECCC--STTGGGS-----SCCEEEHHH
T ss_pred HHHHHHHHHhcCCCcccccccchHHHHHhc--cCCCeEEEE-EEcCCCccceEEecc--CccccCC-----CCceeeHHH
Confidence 4556666665554444456666 3322 233444544 66654 5666554 3322111 012335555
Q ss_pred HHHHHHHHHHHHHHCCCcEE-EEccCCCchhhHHHHHHHHHHHcCC
Q psy8860 328 ASIIGQRIAKKALKIGITKV-AFDRSGFRYHGRIKFLADAARKNGL 372 (374)
Q Consensus 328 a~~vG~~la~r~~~~gi~~v-vfDr~~~~yhgrv~a~a~~~re~Gl 372 (374)
|. .-+++.|++.+ .|..+|-++---++|+|+++-++|+
T Consensus 150 Ai-------aml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~ 188 (249)
T 3m0z_A 150 AI-------ALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF 188 (249)
T ss_dssp HH-------HHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC
T ss_pred HH-------HHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc
Confidence 53 34678999999 5578998888999999999999986
No 110
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=20.39 E-value=1.1e+02 Score=26.84 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCC--cEEEEcc----CC---CchhhHHHHHHHHHHHcCCCC
Q psy8860 332 GQRIAKKALKIGI--TKVAFDR----SG---FRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 332 G~~la~r~~~~gi--~~vvfDr----~~---~~yhgrv~a~a~~~re~Gl~f 374 (374)
|+.+++.+.+.|- .++.|=. |. .....|.++|.+++++.|+++
T Consensus 121 g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (304)
T 3gbv_A 121 GYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPAC 172 (304)
T ss_dssp HHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCc
Confidence 4455555555666 7776654 31 224679999999999999864
No 111
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.34 E-value=41 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=21.0
Q ss_pred cCCcc---eeecCCCeEEEEecc-EEEEEeCC
Q psy8860 120 SMGKM---PIFIPPNVEVTLNSN-KITLKGPL 147 (374)
Q Consensus 120 ~ig~~---~I~IP~~V~v~~~~~-~i~vkGp~ 147 (374)
.+|-. .++||+||+|++.++ .|+++|..
T Consensus 149 ~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiD 180 (223)
T 3bbo_I 149 NLGFSHPVKMQIPDSLKVKVEENTRITVSGYD 180 (223)
T ss_dssp CSSCSSCEEEECCSSEEEECSSTTBCEEEESS
T ss_pred EeeCCccEEEECCCCeEEEeCCCCEEEEEeCC
Confidence 56743 558999999998764 78888764
No 112
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=20.23 E-value=70 Score=26.20 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=26.4
Q ss_pred HHHHHHCCCcEEEEccCCCchhhHHHHHHHHHHHcCCCC
Q psy8860 336 AKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF 374 (374)
Q Consensus 336 a~r~~~~gi~~vvfDr~~~~yhgrv~a~a~~~re~Gl~f 374 (374)
++.|.++|+..+++.-|.. -..+++.++++|+.+
T Consensus 87 ~~~~~~~gi~~i~~~~g~~-----~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 87 LPEVLALRPGLVWLQSGIR-----HPEFEKALKEAGIPV 120 (140)
T ss_dssp HHHHHHHCCSCEEECTTCC-----CHHHHHHHHHTTCCE
T ss_pred HHHHHHcCCCEEEEcCCcC-----HHHHHHHHHHcCCEE
Confidence 4677788999888876654 278889999999863
Done!